ECOD: domain e6o9lI1

Domain ID e6o9lI1

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: RNA_POL_M_15KD

UID:	002491079
Type:	Automatic domain
Parent:	e1twfI1
Range:	I:1-59
Ligands:	ZN
PDB:	6o9l
PDB Description:	DNA-directed RNA polymerase II subunit RPB9
UniProt:	P36954
Hsap BLAST neighbor:	P36954
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e6o9lI1	I:1-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6o9lI2	I:60-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Domains in the same PDB:

e6o9l01	0:11-243	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6o9l41	4:6-264	HAD domain-like	HAD domain-related	vWA-like
e6o9l42	4:265-300	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6o9l51	5:2-67	TFB5-related	TFB5-related	TFB5-related
e6o9l81	8:13-311	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase
e6o9l91	9:11-161	HTH	HTH	Cyclin-like
e6o9l92	9:162-286	HTH	HTH	Cyclin-like
e6o9lB1	B:10-67,B:87-200,B:392-528	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6o9lB4	B:201-391	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6o9lB7	B:529-618	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e6o9lB5	B:619-768	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6o9lB3	B:769-805,B:930-1053	cradle loop barrel	RIFT-related	double psi
e6o9lB2	B:806-929	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6o9lB6	B:1054-1174	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6o9lC2	C:1-42,C:179-275	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6o9lC1	C:43-178	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6o9lD1	D:14-142	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6o9lE1	E:1-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e6o9lE2	E:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e6o9lF1	F:42-127	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e6o9lG1	G:1-77	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e6o9lG2	G:78-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6o9lH1	H:1-150	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6o9lI1	I:1-59	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6o9lI2	I:60-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6o9lJ1	J:1-67	HTH	RPB10	RPB10
e6o9lK1	K:1-117	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6o9lL1	L:13-58	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6o9lM1	M:7-67	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6o9lM2	M:68-208	HTH	HTH	Cyclin-like
e6o9lM3	M:209-316	HTH	HTH	Cyclin-like
e6o9lN1	N:9-51,N:308-321	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e6o9lN2	N:322-376	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e6o9lO2	O:1-53	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e6o9lO1	O:54-99	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e6o9lP2	P:153-255	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e6o9lP1	P:256-337	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e6o9lR2	R:75-146	HTH	HTH	winged
e6o9lR1	R:147-209	HTH	HTH	winged
e6o9lR3	R:210-242	HTH	HTH	winged
e6o9lU2	U:132-240	RuvA-C	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e6o9lU1	U:241-301	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related