ECOD: domain e6qdvY1

Domain ID e6qdvY1

A: a+b two layers
X: Alpha-beta plaits
H: RNA-binding domain, RBD
T: RNA-binding domain, RBD
F: RRM_1

UID:	002448754
Type:	Automatic domain
Parent:	e1nu4A1
Range:	Y:3-94
PDB:	6qdv
PDB Description:	U2 small nuclear ribonucleoprotein B''
UniProt:	P08579
Hsap BLAST neighbor:	P08579
Species:	Homo sapiens

Domains in the same chain:

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e6qdvY1	Y:3-94	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Domains in the same PDB:

e6qdv71	7:22-242	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdv72	7:243-411	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdv81	8:64-154	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e6qdv91	9:5-148	Mago nashi protein	Mago nashi protein	Mago nashi protein
e6qdvA5	A:25-810	Pre-mRNA-splicing factor 8 N-terminal domain	Pre-mRNA-splicing factor 8 N-terminal domain	Pre-mRNA-splicing factor 8 N-terminal domain
e6qdvA3	A:811-1182	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e6qdvA4	A:1183-1502	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e6qdvA1	A:1503-1754	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease-like
e6qdvA2	A:1755-2019	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e6qdvA6	A:2067-2314	Cytidine deaminase-like	Cytidine deaminase-like	Cytidine deaminase-like
e6qdvb1	b:6-87	SH3	SH3	SH3
e6qdvB1	B:404-682	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdvB11	B:683-886	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdvB5	B:887-993	HTH	HTH	winged
e6qdvB9	B:994-1125	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like
e6qdvB6	B:1126-1180	HhH/H2TH	SAM-like subdomain in Sec63-like proteins	SAM-like subdomain in Sec63-like proteins
e6qdvB8	B:1181-1311	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e6qdvB4	B:1312-1520	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdvB10	B:1521-1722	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdvB12	B:1723-1824	HTH	HTH	winged
e6qdvB7	B:1825-1957	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like	Sec63 N-terminal subdomain-like
e6qdvB3	B:1958-2015	HhH/H2TH	SAM-like subdomain in Sec63-like proteins	SAM-like subdomain in Sec63-like proteins
e6qdvB2	B:2016-2125	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e6qdvC4	C:56-439	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdvC2	C:440-580	cradle loop barrel	RIFT-related	Alanine racemase-C
e6qdvC3	C:581-659	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e6qdvC1	C:660-828	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e6qdvC5	C:829-954	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e6qdvd1	d:2-85	SH3	SH3	SH3
e6qdve1	e:13-91	SH3	SH3	SH3
e6qdvf1	f:4-75	SH3	SH3	SH3
e6qdvg1	g:4-76	SH3	SH3	SH3
e6qdvh1	h:1-80	SH3	SH3	SH3
e6qdvH2	H:149-406	Repetitive alpha hairpins	ARM repeat	ARM repeat
e6qdvH1	H:448-648	Repetitive alpha hairpins	ARM repeat	ARM repeat
e6qdvi1	i:3-166	Cyclophilin-like	Cyclophilin-like	Cyclophilin-like
e6qdvj1	j:13-115	SH3	SH3	SH3
e6qdvJ1	J:185-504	beta-propeller-like	beta-propeller	7-bladed
e6qdvk1	k:6-87	SH3	SH3	SH3
e6qdvl1	l:1-80	SH3	SH3	SH3
e6qdvL1	L:1-144	Pre-mRNA-splicing factor BUD31	Pre-mRNA-splicing factor BUD31	Pre-mRNA-splicing factor BUD31
e6qdvm1	m:13-115	SH3	SH3	SH3
e6qdvM3	M:18-89	RING/U-box-like	RING/U-box-like	FYVE/PHD zinc finger
e6qdvM1	M:90-220	CCCH zinc finger	CCCH zinc finger	CCCH zinc finger
e6qdvM2	M:221-306	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD
e6qdvn1	n:2-84	SH3	SH3	SH3
e6qdvN1	N:52-357	beta-propeller-like	beta-propeller	7-bladed
e6qdvo1	o:67-579	beta-propeller-like	beta-propeller	7-bladed
e6qdvp1	p:11-91	SH3	SH3	SH3
e6qdvq1	q:4-75	SH3	SH3	SH3
e6qdvr1	r:4-76	SH3	SH3	SH3
e6qdvS1	S:176-802	Repetitive alpha hairpins	ARM repeat	ARM repeat
e6qdvT1	T:19-30,T:33-749	Repetitive alpha hairpins	ARM repeat	ARM repeat
e6qdvU1	U:19-415	Repetitive alpha hairpins	ARM repeat	ARM repeat
e6qdvU3	U:416-492,U:660-706,U:795-1134	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdvU4	U:493-659	cradle loop barrel	RIFT-related	Alanine racemase-C
e6qdvU5	U:707-753,U:773-794	Spliceosomal helicase Aquarius insert domain	Spliceosomal helicase Aquarius insert domain	Spliceosomal helicase Aquarius insert domain
e6qdvU2	U:1135-1381	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6qdvW1	W:2-163	Single-stranded right-handed beta-helix	Leucine-rich repeats	Leucine-rich repeats
e6qdvY1	Y:3-94	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD