ECOD: domain e6skgBp3

Domain ID e6skgBp3

A: alpha arrays
X: RuvA-C
H: Hypothetical protein AF0491, middle domain
T: Hypothetical protein AF0491, middle domain
F: SBDS_domain_II

UID:	002642989
Type:	Automatic domain
Parent:	e1t95A1
Range:	Bp:87-161
PDB:	6skg
PDB Description:	Predicted exosome subunit, UPF0023 family
Species:

Domains in the same chain:

Download Pymol

e6skgBp3	Bp:87-161	RuvA-C	Hypothetical protein AF0491, middle domain	Hypothetical protein AF0491, middle domain
e6skgBp2	Bp:4-86	FYSH domain	FYSH domain	FYSH domain
e6skgBp1	Bp:162-235	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like

Domains in the same PDB:

e6skgAb1	Ab:3-198	Flavodoxin-like	Ribosomal protein S2/SIS domain	Ribosomal protein S2/SIS domain
e6skgAc2	Ac:86-196	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e6skgAc1	Ac:2-93	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e6skgAd1	Ad:9-99	Ribosomal protein L25-like	40S ribosomal protein S3A N-terminal domain	40S ribosomal protein S3A N-terminal domain
e6skgAd2	Ad:100-198	T-fold	40S ribosomal protein S3A C-terminal domain	40S ribosomal protein S3A C-terminal domain
e6skgAe1	Ae:2-175	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e6skgAf1	Af:180-243	SH3	SH3	SH3
e6skgAf2	Af:118-179	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6skgAf3	Af:2-117	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e6skgAh1	Ah:3-125	Ribosomal protein L25-like	Ribosomal protein L25-like	Ribosomal protein L25-like
e6skgAi1	Ai:2-75,Ai:96-215	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e6skgAj1	Aj:64-130	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e6skgAj2	Aj:2-63	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e6skgAk1	Ak:2-126	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e6skgAl1	Al:2-134	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e6skgAm1	Am:2-101	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e6skgAn1	An:14-140	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e6skgAo1	Ao:3-145	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6skgAp1	Ap:4-138	HhH/H2TH	H2TH	H2TH
e6skgAq2	Aq:83-150	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e6skgAq1	Aq:2-82	HTH	40S ribosomal protein S13 N-terminal domain	40S ribosomal protein S13 N-terminal domain
e6skgAr1	Ar:3-56	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e6skgAs1	As:2-109	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6skgAt1	At:2-65	HTH	HTH	FF domain
e6skgAu1	Au:6-121	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19
e6skgAv1	Av:2-150	HTH	HTH	winged
e6skgAw1	Aw:1-95	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e6skgAx1	Ax:4-64	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6skgAy1	Ay:3-66	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6skgAz1	Az:8-62	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6skgBa1	Ba:2-155	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e	Ribosomal protein L30p/L7e
e6skgBb1	Bb:3-98	Bacillus chorismate mutase-like	L30e-like	L30e-like
e6skgBc1	Bc:2-90	Ribosomal protein L31e-like	Ribosomal protein L31e/gp120 outer domain	Ribosomal protein L31e/gp120 outer domain
e6skgBC2	BC:2-92	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6skgBC1	BC:93-238	SH3	SH3	SH3
e6skgBd1	Bd:2-125	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L32e	Ribosomal protein L32e
e6skgBD1	BD:3-346	cradle loop barrel	RIFT-related	Alanine racemase-C
e6skgBe1	Be:1-89	Glucocorticoid receptor-like	RPL34	RPL34
e6skgBE1	BE:1-255	Ribosomal protein L4	Ribosomal protein L4	Ribosomal protein L4
e6skgBf1	Bf:16-101	cradle loop barrel	RIFT-related	Alanine racemase-C
e6skgBF1	BF:4-113,BF:134-180	Ribosomal protein L5	Ribosomal protein L5	Ribosomal protein L5
e6skgBg1	Bg:2-85	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6skgBG2	BG:2-85	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e6skgBG1	BG:86-184	Ribosomal protein L6	Ribosomal protein L6	Ribosomal protein L6
e6skgBh1	Bh:2-63	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6skgBH1	BH:3-123	Bacillus chorismate mutase-like	L30e-like	L30e-like
e6skgBi1	Bi:2-51	Ribosomal protein L39e	Ribosomal protein L39e	Ribosomal protein L39e
e6skgBI1	BI:3-123	Bacillus chorismate mutase-like	L30e-like	L30e-like
e6skgBj1	Bj:2-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6skgBJ1	BJ:3-180	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal protein L10e
e6skgBk1	Bk:1-36	Ribosomal protein L41-A	Ribosomal protein L41-A	Ribosomal protein L41-A
e6skgBK1	BK:1-142	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal protein L13 and L16-A	Ribosomal protein L13 and L16-A
e6skgBl1	Bl:1-93	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6skgBL1	BL:2-141	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e6skgBm1	Bm:3-65	HTH	HTH	FF domain
e6skgBM1	BM:2-82	SH3	SH3	SH3
e6skgBn1	Bn:1-92	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e6skgBN1	BN:2-82	SH3	SH3	SH3
e6skgBo1	Bo:3-45	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers
e6skgBO1	BO:1-148	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e6skgBp2	Bp:4-86	FYSH domain	FYSH domain	FYSH domain
e6skgBp1	Bp:162-235	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e6skgBp3	Bp:87-161	RuvA-C	Hypothetical protein AF0491, middle domain	Hypothetical protein AF0491, middle domain
e6skgBP1	BP:2-194	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e6skgBQ1	BQ:2-155,BQ:180-197	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e6skgBR1	BR:2-121	Ribosomal protein L13/L15p/L18e/L32e	Ribosomal proteins L15p and L18e	Ribosomal proteins L15p and L18e
e6skgBS1	BS:55-148	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain	Ribosomal protein L19 (L19e) C-terminal domain
e6skgBS2	BS:3-54	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain	Ribosomal protein L19 (L19e) N-terminal domain
e6skgBT1	BT:2-75	GP2-like	RplX-like	RplX-like
e6skgBU1	BU:2-97	SH3	SH3	SH3
e6skgBV1	BV:2-155	Enolase-N/ribosomal protein	Ribosomal protein L22	Ribosomal protein L22
e6skgBW1	BW:1-85	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e6skgBX1	BX:1-120	SH3	SH3	SH3
e6skgBY1	BY:2-63	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e6skgBZ1	BZ:1-64	Long alpha-hairpin	Ribosomal protein L29 (L29p)	Ribosomal protein L29 (L29p)