Domain ID e7aodM3

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  • A: a+b complex topology
  • X: N-terminal domain in RNA-polymerase beta-prime subunit
  • H: N-terminal domain in RNA-polymerase beta-prime subunit
  • T: N-terminal domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_1
UID: 002700205
Type: Automatic domain
Parent: e1twfA4
Range: M:1-142,M:173-258,M:321-471
Ligands: ZN
PDB: 7aod
PDB Description: DNA-directed RNA polymerase I subunit rpa1
Species:

Structure of domain e7aodM3

Domains in the same chain:

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e7aodM3 M:1-142,M:173-258,M:321-471 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7aodM4 M:472-513,M:597-681 cradle loop barrel RIFT-related double psi
e7aodM1 M:514-596 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7aodM6 M:682-841 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7aodM8 M:842-1066 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7aodM9 M:1067-1189 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase I RPA190 subunit third helical domain in yeast RNA-polymerase I RPA190 subunit
e7aodM2 M:1190-1243,M:1568-1681 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7aodM7 M:1244-1270,M:1518-1567 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7aodM5 M:1271-1345,M:1476-1517 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e7aodA7 A:1-142,A:173-258,A:321-471 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7aodA2 A:472-513,A:597-681 cradle loop barrel RIFT-related double psi
e7aodA5 A:514-596 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7aodA3 A:682-841 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7aodA8 A:842-1066 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7aodA9 A:1067-1189 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase I RPA190 subunit third helical domain in yeast RNA-polymerase I RPA190 subunit
e7aodA6 A:1190-1243,A:1568-1681 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7aodA1 A:1244-1270,A:1518-1567 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7aodA4 A:1271-1345,A:1476-1517 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7aodB5 B:1-188,B:376-523 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7aodB7 B:189-375 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e7aodB2 B:524-631 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e7aodB6 B:632-746 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e7aodB1 B:747-783,B:897-1025 cradle loop barrel RIFT-related double psi
e7aodB4 B:784-896 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7aodB3 B:1026-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7aodC2 C:29-81,C:229-345 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7aodC1 C:82-228 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e7aodD1 D:12-59 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e7aodE2 E:4-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e7aodE1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e7aodF1 F:61-142 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e7aodG2 G:3-82 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e7aodG1 G:83-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7aodH1 H:3-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7aodI1 I:6-62 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7aodJ1 J:1-68 HTH RPB10 RPB10
e7aodK1 K:20-114 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7aodL1 L:19-63 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7aodM3 M:1-142,M:173-258,M:321-471 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7aodM4 M:472-513,M:597-681 cradle loop barrel RIFT-related double psi
e7aodM1 M:514-596 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7aodM6 M:682-841 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7aodM8 M:842-1066 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7aodM9 M:1067-1189 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase I RPA190 subunit third helical domain in yeast RNA-polymerase I RPA190 subunit
e7aodM2 M:1190-1243,M:1568-1681 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7aodM7 M:1244-1270,M:1518-1567 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7aodM5 M:1271-1345,M:1476-1517 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7aodN2 N:1-188,N:376-523 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7aodN6 N:189-375 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e7aodN1 N:524-631 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e7aodN7 N:632-746 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e7aodN5 N:747-783,N:897-1025 cradle loop barrel RIFT-related double psi
e7aodN4 N:784-896 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7aodN3 N:1026-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7aodO2 O:29-81,O:229-345 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7aodO1 O:82-228 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e7aodP1 P:12-59 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e7aodQ2 Q:4-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e7aodQ1 Q:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e7aodR1 R:61-142 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e7aodS1 S:3-82 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e7aodS2 S:83-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7aodT1 T:3-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7aodU1 U:6-62 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7aodV1 V:1-68 HTH RPB10 RPB10
e7aodW1 W:20-114 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7aodX1 X:19-63 Rubredoxin-like Rubredoxin-related Rubredoxin-related