Domain ID e7ckqD1

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  • A: a+b complex topology
  • X: central helical domain in RNA-polymerase beta-prime subunit
  • H: central helical domain in RNA-polymerase beta-prime subunit
  • T: central helical domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_5
UID: 002774737
Type: Automatic domain
Parent: e3dxjN9
Range: D:893-966,D:1030-1185
Ligands: ZN
PDB: 7ckq
PDB Description: DNA-directed RNA polymerase subunit beta'
Species:

Structure of domain e7ckqD1

Domains in the same chain:

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e7ckqD2 D:7-335 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7ckqD3 D:328-365,D:404-487 cradle loop barrel RIFT-related double psi
e7ckqD6 D:366-406 inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e7ckqD5 D:488-656 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7ckqD4 D:657-827 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7ckqD7 D:828-892 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7ckqD1 D:893-966,D:1030-1185 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7ckqD8 D:967-1029 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif

Domains in the same PDB:

e7ckqA1 A:5-49,A:172-228 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7ckqA2 A:50-171 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e7ckqB1 B:6-49,B:172-225 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7ckqB2 B:50-171 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e7ckqC6 C:6-140,C:408-533 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7ckqC1 C:141-288,C:368-407 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e7ckqC5 C:534-670 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e7ckqC3 C:671-749 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7ckqC4 C:750-787,C:920-1042 cradle loop barrel RIFT-related double psi
e7ckqC7 C:788-919 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7ckqC2 C:1043-1145 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7ckqD2 D:7-335 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7ckqD3 D:328-365,D:404-487 cradle loop barrel RIFT-related double psi
e7ckqD6 D:366-406 inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e7ckqD5 D:488-656 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7ckqD4 D:657-827 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7ckqD7 D:828-892 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7ckqD1 D:893-966,D:1030-1185 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7ckqD8 D:967-1029 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7ckqE1 E:2-63 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit
e7ckqF2 F:100-206 Sigma2 domain-like Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors
e7ckqF1 F:207-263 HTH HTH tri-helical
e7ckqF3 F:235-237,F:264-371 HTH HTH tri-helical
e7ckqG1 G:2-120 HTH HTH Putative DNA-binding domain
e7ckqG2 G:121-277 Probable bacterial effector-binding domain Probable bacterial effector-binding domain Probable bacterial effector-binding domain
e7ckqH1 H:1-60 GP2-like Bacterial RNA polymerase subunit epsilon Bacterial RNA polymerase subunit epsilon
e7ckqI2 I:2-120 HTH HTH Putative DNA-binding domain
e7ckqI1 I:121-277 Probable bacterial effector-binding domain Probable bacterial effector-binding domain Probable bacterial effector-binding domain