Domain ID e7lbmE2

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  • A: a/b three-layered sandwiches
  • X: Restriction endonuclease-like
  • H: Eukaryotic RPB5 N-terminal domain
  • T: Eukaryotic RPB5 N-terminal domain
  • F: RNA_pol_Rpb5_N
UID: 002722660
Type: Automatic domain
Parent: e1dzfA2
Range: E:1-138
PDB: 7lbm
PDB Description: DNA-directed RNA polymerase II subunit RPB5
Species:

Structure of domain e7lbmE2

Domains in the same chain:

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e7lbmE2 E:1-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e7lbmE1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit

Domains in the same PDB:

e7lbm31 3:15-230 HAD domain-like HAD domain-related vWA-like
e7lbma1 a:51-238 HAD domain-like HAD domain-related vWA-like
e7lbma2 a:239-316 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7lbma3 a:317-387 RING/U-box-like RING/U-box-like Cysteine-rich domain
e7lbmA1 A:10-157,A:183-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7lbmA4 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e7lbmA2 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7lbmA7 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7lbmA8 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7lbmA9 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e7lbmA3 A:1083-1135,A:1361-1485,A:1616-1629,A:1650-1657 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7lbmA6 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7lbmA5 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7lbmb2 b:8-72,b:95-264 HAD domain-like HAD domain-related vWA-like
e7lbmb1 b:265-292 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7lbmB2 B:14-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7lbmB6 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e7lbmB7 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e7lbmB3 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e7lbmB1 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e7lbmB4 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7lbmB5 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7lbmc1 c:2-67 TFB5-related TFB5-related TFB5-related
e7lbmC1 C:1-42,C:179-271 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7lbmC2 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e7lbmD1 D:14-142 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e7lbme1 e:10-312 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase
e7lbmE2 E:1-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e7lbmE1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e7lbmf2 f:1-161 HTH HTH Cyclin-like
e7lbmf1 f:162-284 HTH HTH Cyclin-like
e7lbmF1 F:42-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e7lbmg1 g:8-137 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6
e7lbmG2 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e7lbmG1 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7lbmh1 h:4-78,h:102-160 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8
e7lbmH1 H:1-150 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7lbmI1 I:10-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7lbmI2 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7lbmJ1 J:1-67 HTH RPB10 RPB10
e7lbmk1 k:16-203 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e7lbmK1 K:1-116 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7lbml1 l:3-204 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e7lbmL1 L:13-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7lbmm1 m:11-140 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22
e7lbmM2 M:9-51,M:308-321 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e7lbmM1 M:322-376 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e7lbmN2 N:1-53 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e7lbmN1 N:54-99 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e7lbmo1 o:42-149 Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21)
e7lbmO3 O:7-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7lbmO2 O:105-207 HTH HTH Cyclin-like
e7lbmO1 O:208-316 HTH HTH Cyclin-like
e7lbmP1 P:153-255 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e7lbmP2 P:256-337 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e7lbmQ2 Q:11-103 HTH HTH winged
e7lbmQ1 Q:104-201 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7lbmR2 R:75-146 HTH HTH winged
e7lbmR1 R:147-207 HTH HTH winged
e7lbmR3 R:208-239 HTH HTH winged
e7lbmS1 S:19-54,S:93-183 triple barrel triple barrel Rap30/74 interaction domains-like
e7lbmt1 t:74-172 Mediator hinge subcomplex-like Mediator hinge subcomplex-like MED7 hinge region
e7lbmx1 x:3-29,x:50-133 Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21)
e7lbmX1 X:1-243 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7lbmX3 X:244-446 XPD arch domain XPD arch domain XPD arch domain
e7lbmX2 X:447-760 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7lbmy1 y:13-105 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31