Domain ID e7ml2M2

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: TF_Zn_Ribbon
UID: 002823803
Type: Automatic domain
Parent: e1pftA1
Range: M:16-68
Ligands: ZN
PDB: 7ml2
PDB Description: Transcription initiation factor IIB
Species:

Structure of domain e7ml2M2

Domains in the same chain:

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e7ml2M2 M:16-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7ml2M3 M:67-218 HTH HTH Cyclin-like
e7ml2M1 M:219-326 HTH HTH Cyclin-like

Domains in the same PDB:

e7ml202 0:1-244,0:446-502,0:724-754 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7ml203 0:245-445 XPD arch domain XPD arch domain XPD arch domain
e7ml201 0:503-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7ml232 3:8-79 RING/U-box-like RING/U-box-like RING/U-box
e7ml231 3:80-145 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e7ml241 4:22-285 HAD domain-like HAD domain-related vWA-like
e7ml242 4:286-323 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7ml251 5:2-67 TFB5-related TFB5-related TFB5-related
e7ml262 6:107-307 HAD domain-like HAD domain-related vWA-like
e7ml263 6:308-374 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7ml261 6:375-457 RING/U-box-like RING/U-box-like Cysteine-rich domain
e7ml2A7 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7ml2A8 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e7ml2A1 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7ml2A9 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7ml2A3 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7ml2A5 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e7ml2A6 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7ml2A2 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7ml2A4 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7ml2B1 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7ml2B4 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e7ml2B2 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e7ml2B6 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e7ml2B3 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e7ml2B7 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7ml2B5 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7ml2C2 C:4-41,C:173-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7ml2C1 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e7ml2D1 D:24-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e7ml2E2 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e7ml2E1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e7ml2F1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e7ml2G2 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e7ml2G1 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7ml2H1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7ml2I2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7ml2I1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7ml2J1 J:1-65 HTH RPB10 RPB10
e7ml2K1 K:1-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7ml2L1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7ml2M2 M:16-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7ml2M3 M:67-218 HTH HTH Cyclin-like
e7ml2M1 M:219-326 HTH HTH Cyclin-like
e7ml2O1 O:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e7ml2O2 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e7ml2Q1 Q:21-35,Q:97-142,Q:327-415 triple barrel triple barrel Rap30/74 interaction domains-like
e7ml2U1 U:241-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e7ml2V1 V:56-119 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e7ml2W1 W:4-99,W:170-194 HTH HTH winged
e7ml2W2 W:100-169 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7ml2X1 X:123-188 HTH HTH winged
e7ml2X3 X:189-249 HTH HTH winged
e7ml2X2 X:250-283 HTH HTH winged