Domain ID e7o4jB1

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  • A: a+b complex topology
  • X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase
  • H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase
  • T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase
  • F: RNA_pol_Rpb2_1,RNA_pol_Rpb2_3
UID: 002765476
Type: Automatic domain
Parent: e4c2mB1
Range: B:18-218,B:405-541
PDB: 7o4j
PDB Description: DNA-directed RNA polymerase II subunit RPB2
Species:

Structure of domain e7o4jB1

Domains in the same chain:

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e7o4jB1 B:18-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7o4jB7 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e7o4jB2 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e7o4jB5 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e7o4jB6 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e7o4jB3 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7o4jB4 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e7o4j02 0:1-248,0:443-502,0:724-752 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7o4j03 0:245-445 XPD arch domain XPD arch domain XPD arch domain
e7o4j01 0:503-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e7o4j31 3:9-79 RING/U-box-like RING/U-box-like RING/U-box
e7o4j32 3:80-139 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e7o4j42 4:21-285 HAD domain-like HAD domain-related vWA-like
e7o4j41 4:286-328 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7o4j51 5:2-66 TFB5-related TFB5-related TFB5-related
e7o4j63 6:96-122,6:375-459 RING/U-box-like RING/U-box-like Cysteine-rich domain
e7o4j62 6:123-307 HAD domain-like HAD domain-related vWA-like
e7o4j61 6:308-374 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7o4jA6 A:2-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e7o4jA3 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e7o4jA8 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e7o4jA9 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e7o4jA7 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e7o4jA4 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e7o4jA5 A:1060-1102,A:1301-1454 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e7o4jA2 A:1103-1131,A:1243-1300 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7o4jA1 A:1132-1242 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e7o4jB1 B:18-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7o4jB7 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e7o4jB2 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e7o4jB5 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e7o4jB6 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e7o4jB3 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e7o4jB4 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e7o4jC2 C:3-37,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7o4jC1 C:38-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e7o4jD1 D:11-71,D:131-220 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e7o4jE1 E:2-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e7o4jE2 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e7o4jF1 F:70-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e7o4jG1 G:1-80 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e7o4jG2 G:81-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7o4jH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e7o4jI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7o4jI1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7o4jJ1 J:1-69 HTH RPB10 RPB10
e7o4jK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e7o4jL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7o4jM2 M:14-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e7o4jM1 M:78-230 HTH HTH Cyclin-like
e7o4jM3 M:231-342 HTH HTH Cyclin-like
e7o4jO2 O:60-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e7o4jO1 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e7o4jU2 U:3-56 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e7o4jU1 U:229-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e7o4jV2 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e7o4jV1 V:55-122 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain