Domain ID e8byqA2

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: double psi
  • F: RNA_pol_Rpb1_2
UID: 003025423
Type: Automatic domain
Parent: e1twfA1
Range: A:351-388,A:450-533
Ligands: MG
PDB: 8byq
PDB Description: DNA-directed RNA polymerase subunit
Species:

Structure of domain e8byqA2

Domains in the same chain:

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e8byqA7 A:11-155,A:182-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e8byqA2 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e8byqA3 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e8byqA5 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e8byqA9 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e8byqA4 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e8byqA1 A:1083-1135,A:1361-1487 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e8byqA8 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e8byqA6 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e8byq11 1:1-243 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e8byq13 1:244-446 XPD arch domain XPD arch domain XPD arch domain
e8byq12 1:447-760 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e8byq52 5:8-72,5:95-264 HAD domain-like HAD domain-related vWA-like
e8byq51 5:265-292 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8byq61 6:2-67 TFB5-related TFB5-related TFB5-related
e8byq81 8:13-310 Protein kinase/SAICAR synthase/ATP-grasp Protein kinase/SAICAR synthase/ATP-grasp Protein kinase
e8byq92 9:2-161 HTH HTH Cyclin-like
e8byq91 9:162-288 HTH HTH Cyclin-like
e8byqa1 a:39-135 Histone-like Histone-related Histone
e8byqA7 A:11-155,A:182-350 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e8byqA2 A:351-388,A:450-533 cradle loop barrel RIFT-related double psi
e8byqA3 A:389-449 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e8byqA5 A:534-685 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e8byqA9 A:686-894 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e8byqA4 A:895-1082 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e8byqA1 A:1083-1135,A:1361-1487 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e8byqA8 A:1136-1164,A:1298-1360 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e8byqA6 A:1165-1297 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e8byqb1 b:22-103 Histone-like Histone-related Histone
e8byqB1 B:15-67,B:87-200,B:392-528 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8byqB4 B:201-391 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e8byqB6 B:529-618 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e8byqB3 B:619-768 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e8byqB5 B:769-805,B:930-1053 cradle loop barrel RIFT-related double psi
e8byqB7 B:806-929 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e8byqB2 B:1054-1174 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8byqc1 c:12-120 Histone-like Histone-related Histone
e8byqC2 C:2-42,C:179-271 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e8byqC1 C:43-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e8byqd1 d:30-126 Histone-like Histone-related Histone
e8byqD1 D:14-141 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e8byqe1 e:38-135 Histone-like Histone-related Histone
e8byqE2 E:2-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e8byqE1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e8byqf1 f:22-103 Histone-like Histone-related Histone
e8byqF1 F:49-127 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e8byqg1 g:14-119 Histone-like Histone-related Histone
e8byqG1 G:1-77 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e8byqG2 G:78-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e8byqh1 h:32-126 Histone-like Histone-related Histone
e8byqH1 H:2-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e8byqI1 I:12-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8byqI2 I:60-125 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8byqJ1 J:1-64 HTH RPB10 RPB10
e8byqK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e8byqL1 L:15-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8byqM1 M:14-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8byqM3 M:106-207 HTH HTH Cyclin-like
e8byqM2 M:208-316 HTH HTH Cyclin-like
e8byqO1 O:159-256 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e8byqO2 O:257-337 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e8byqQ1 Q:5-54,Q:93-180 triple barrel triple barrel Rap30/74 interaction domains-like
e8byqU2 U:9-51,U:308-321 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e8byqU1 U:322-376 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e8byqV2 V:1-53 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e8byqV1 V:54-99 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e8byqW2 W:10-103 HTH HTH winged
e8byqW1 W:104-196 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8byqX1 X:72-146 HTH HTH winged
e8byqX2 X:147-209 HTH HTH winged
e8byqX3 X:210-242 HTH HTH winged