Domain ID e8ceoB5

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  • A: a+b complex topology
  • X: inserted a+b domain in yeast RNA polymerase beta subunit
  • H: inserted a+b domain in yeast RNA polymerase beta subunit
  • T: inserted a+b domain in yeast RNA polymerase beta subunit
  • F: RNA_pol_Rpb2_4
UID: 002984677
Type: Automatic domain
Parent: e1twfB7
Range: B:542-630
PDB: 8ceo
PDB Description: DNA-directed RNA polymerase II subunit RPB2
Species:

Structure of domain e8ceoB5

Domains in the same chain:

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e8ceoB7 B:18-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8ceoB1 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e8ceoB5 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e8ceoB6 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e8ceoB2 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e8ceoB3 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e8ceoB4 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e8ceo02 0:1-250,0:438-502,0:724-752 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e8ceo03 0:247-441 XPD arch domain XPD arch domain XPD arch domain
e8ceo01 0:503-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e8ceo31 3:9-79 RING/U-box-like RING/U-box-like RING/U-box
e8ceo32 3:80-139 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e8ceo41 4:21-285 HAD domain-like HAD domain-related vWA-like
e8ceo42 4:286-328 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8ceo51 5:2-66 TFB5-related TFB5-related TFB5-related
e8ceoa1 a:3-52,a:100-206,a:277-288 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6 Mediator of RNA polymerase II transcription subunit 6
e8ceob1 b:22-172,b:193-213 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8 Mediator of RNA polymerase II transcription subunit 8
e8ceoB7 B:18-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8ceoB1 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e8ceoB5 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e8ceoB6 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e8ceoB2 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e8ceoB3 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e8ceoB4 B:1098-1224 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8ceoc1 c:1-111 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11 Mediator of RNA polymerase II transcription subunit 11
e8ceoC2 C:3-37,C:173-268 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e8ceoC1 C:38-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e8ceoD1 D:11-71,D:131-220 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e8ceoe1 e:1-107,e:159-302 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e8ceoE1 E:2-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e8ceoE2 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e8ceof1 f:2-210 mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related mRNA triphosphatase CET1-related
e8ceoF1 F:34-35,F:62-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e8ceog1 g:2-118 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22 Mediator of RNA polymerase II transcription subunit 22
e8ceoG2 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e8ceoG1 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e8ceoH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e8ceoi1 i:9-83 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31
e8ceoi2 i:108-214 Mediator hinge subcomplex-like Mediator hinge subcomplex-like MED7 hinge region
e8ceoI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8ceoI1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8ceoJ1 J:1-69 HTH RPB10 RPB10
e8ceoK1 K:1-115 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e8ceoL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8ceoM2 M:14-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e8ceoM1 M:78-230 HTH HTH Cyclin-like
e8ceoM3 M:231-342 HTH HTH Cyclin-like
e8ceon1 n:3-138 Mediator hinge subcomplex-like Mediator hinge subcomplex-like RNA polymerase II holoenzyme component SRB7 (MED21)
e8ceoo1 o:17-126 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31 Mediator of RNA polymerase II transcription submodule Med7N/31
e8ceoO2 O:60-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e8ceoO1 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e8ceor1 r:38-134 Histone-like Histone-related Histone
e8ceos1 s:21-102 Histone-like Histone-related Histone
e8ceot1 t:11-119 Histone-like Histone-related Histone
e8ceou1 u:26-122 Histone-like Histone-related Histone
e8ceoU1 U:3-56 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e8ceoU2 U:229-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e8ceov1 v:37-134 Histone-like Histone-related Histone
e8ceoV1 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e8ceoV2 V:55-122 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e8ceow1 w:23-102 Histone-like Histone-related Histone
e8ceox1 x:13-118 Histone-like Histone-related Histone
e8ceoy1 y:28-122 Histone-like Histone-related Histone