Domain ID e8f1jM2

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: Sigma54 core-binding domain
  • F: Sigma54_CBD
UID: 003028892
Type: Automatic domain
Parent: e2k9mA1
Range: M:117-263
PDB: 8f1j
PDB Description: RNA polymerase sigma-54 factor
Species:

Structure of domain e8f1jM2

Domains in the same chain:

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e8f1jM1 M:12-50,M:111-116 RNA polymerase sigma-54 factor N-terminal region RNA polymerase sigma-54 factor N-terminal region RNA polymerase sigma-54 factor N-terminal region
e8f1jM2 M:117-263 HTH HTH Sigma54 core-binding domain
e8f1jM4 M:264-405 HTH HTH tri-helical
e8f1jM3 M:406-477 HTH HTH tri-helical

Domains in the same PDB:

e8f1jG1 G:4-52,G:179-234 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e8f1jG2 G:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e8f1jH2 H:4-52,H:179-236 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e8f1jH3 H:53-178 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e8f1jH1 H:237-325 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e8f1jI10 I:2-151,I:452-577 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8f1jI5 I:152-225,I:343-451 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e8f1jI4 I:226-234,I:289-342 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e8f1jI1 I:235-288 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e8f1jI9 I:578-712 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e8f1jI8 I:713-790 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e8f1jI3 I:791-827,I:1063-1239 cradle loop barrel RIFT-related double psi
e8f1jI6 I:828-938,I:1045-1062 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e8f1jI2 I:939-1044 Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit
e8f1jI7 I:1240-1341 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8f1jJ5 J:3-341 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e8f1jJ3 J:334-498 cradle loop barrel RIFT-related double psi
e8f1jJ6 J:499-638 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e8f1jJ1 J:639-810 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e8f1jJ4 J:811-894 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e8f1jJ8 J:895-931,J:1214-1373 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e8f1jJ2 J:932-1022 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e8f1jJ9 J:1023-1131 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e8f1jJ7 J:1132-1215 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e8f1jK1 K:2-80 RPB6/omega subunit-like RPB6/omega subunit-like RNA polymerase omega subunit
e8f1jM1 M:12-50,M:111-116 RNA polymerase sigma-54 factor N-terminal region RNA polymerase sigma-54 factor N-terminal region RNA polymerase sigma-54 factor N-terminal region
e8f1jM2 M:117-263 HTH HTH Sigma54 core-binding domain
e8f1jM4 M:264-405 HTH HTH tri-helical
e8f1jM3 M:406-477 HTH HTH tri-helical