ECOD: domain e8hkcF5

Domain ID e8hkcF5

A: a+b complex topology
X: central helical domain in RNA-polymerase beta-prime subunit
H: central helical domain in RNA-polymerase beta-prime subunit
T: central helical domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_5

UID:	003090114
Type:	Automatic domain
Parent:	e5fj8A6
Range:	F:895-930,F:957-959,F:1136-1151,F:1216-1376
Ligands:	ZN
PDB:	8hkc
PDB Description:
Species:

Domains in the same chain:

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e8hkcF6	F:15-333	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e8hkcF7	F:334-377,F:418-498	cradle loop barrel	RIFT-related	double psi
e8hkcF2	F:378-417	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e8hkcF1	F:499-638	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e8hkcF3	F:639-810	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e8hkcF4	F:811-894	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e8hkcF5	F:895-930,F:957-959,F:1136-1151,F:1216-1376	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e8hkcF8	F:1152-1215	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif

Domains in the same PDB:

e8hkcA2	A:6-52,A:174-233	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e8hkcA1	A:53-173	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e8hkcB2	B:6-52,B:174-235	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e8hkcB1	B:53-173	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e8hkcC6	C:3-151,C:452-577	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8hkcC1	C:152-226,C:337-451	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e8hkcC5	C:578-713	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e8hkcC7	C:714-790	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e8hkcC4	C:791-828,C:1060-1237	cradle loop barrel	RIFT-related	double psi
e8hkcC2	C:829-973,C:1026-1059	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e8hkcC3	C:1238-1342	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e8hkcE3	E:9-126	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e8hkcE1	E:127-208	HTH	HTH	tri-helical
e8hkcE2	E:209-284	HTH	HTH	tri-helical
e8hkcF6	F:15-333	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e8hkcF7	F:334-377,F:418-498	cradle loop barrel	RIFT-related	double psi
e8hkcF2	F:378-417	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e8hkcF1	F:499-638	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e8hkcF3	F:639-810	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e8hkcF4	F:811-894	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e8hkcF5	F:895-930,F:957-959,F:1136-1151,F:1216-1376	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e8hkcF8	F:1152-1215	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif