SPD
SPERMIDINEnon-polymer
- Formula
- C7 H19 N3
- Weight
- 145.25 Da
- Type
- NON-POLYMER
- Release
- REL
327
PDB entries
919
ECOD domains in contact
1,048
Contacts (≤ 4 Å)
Top-binding ECOD families
| F-group | Family | Domains |
|---|---|---|
| 2490.3.1.1 | Ribosomal_L27A | 121 |
| 304.109.1.3 | Ribosomal_L15e | 71 |
| 7523.1.1.28 | SBP_bac_8 | 60 |
| 7559.1.1.1 | Ribosomal_L4 | 50 |
| 375.1.1.16 | Ribosomal_L37e | 47 |
| 1.1.7.2 | Ribosomal_L3 | 35 |
| 212.1.1.6 | Ribosomal_S9 | 29 |
| 5054.1.1.1 | Lig_chan | 28 |
| 218.2.1.1 | Ribosomal_L22 | 27 |
| 2490.3.1.2 | Ribosomal_L18 | 23 |
| 4.1.1.38 | Ribosomal_L2_C | 22 |
| 3699.1.1.1 | Spermine_synt_N | 22 |
| 2003.1.5.13 | Spermine_synth | 22 |
| 101.40.1.1 | Ribosomal_S13_N | 21 |
| 218.3.1.1 | Ribosomal_L17 | 19 |
| 2003.1.4.3 | DS | 18 |
| 375.1.1.6 | Ribosomal_L40e | 16 |
| 377.1.1.2 | Ribosomal_S14 | 16 |
| 2490.2.1.1 | Ribosomal_L13 | 13 |
| 4.1.1.14 | Ribosomal_L21e | 12 |
PDB entries containing SPD
| PDB | Chains | Instances |
|---|---|---|
| 4ybb | DA | 4 |
| 5foi | A | 3 |
| 5hkv | X, Y | 9 |
| 5hl7 | X, Y | 8 |
| 5it8 | DA | 4 |
| 5j5b | DA | 4 |
| 5j7l | DA | 4 |
| 5j88 | DA | 4 |
| 5j8a | DA | 4 |
| 5j91 | DA | 4 |
| 5jc9 | DA | 4 |
| 5jvg | X | 3 |
| 5nrg | X | 1 |
| 5xdo | A, B | 2 |
| 5xnh | A, H | 2 |
| 6bq7 | A, B | 2 |
| 6dy5 | A | 1 |
| 6hiv | CA, DL | 4 |
| 6hiw | CA | 4 |
| 6hiy | CA | 2 |