SPD
SPERMIDINEnon-polymer
- Formula
- C7 H19 N3
- Weight
- 145.25 Da
- Type
- NON-POLYMER
- Release
- REL
327
PDB entries
919
ECOD domains in contact
1,048
Contacts (≤ 4 Å)
Top-binding ECOD families
| F-group | Family | Domains |
|---|---|---|
| 2490.3.1.1 | Ribosomal_L27A | 121 |
| 304.109.1.3 | Ribosomal_L15e | 71 |
| 7523.1.1.28 | SBP_bac_8 | 60 |
| 7559.1.1.1 | Ribosomal_L4 | 50 |
| 375.1.1.16 | Ribosomal_L37e | 47 |
| 1.1.7.2 | Ribosomal_L3 | 35 |
| 212.1.1.6 | Ribosomal_S9 | 29 |
| 5054.1.1.1 | Lig_chan | 28 |
| 218.2.1.1 | Ribosomal_L22 | 27 |
| 2490.3.1.2 | Ribosomal_L18 | 23 |
| 4.1.1.38 | Ribosomal_L2_C | 22 |
| 3699.1.1.1 | Spermine_synt_N | 22 |
| 2003.1.5.13 | Spermine_synth | 22 |
| 101.40.1.1 | Ribosomal_S13_N | 21 |
| 218.3.1.1 | Ribosomal_L17 | 19 |
| 2003.1.4.3 | DS | 18 |
| 375.1.1.6 | Ribosomal_L40e | 16 |
| 377.1.1.2 | Ribosomal_S14 | 16 |
| 2490.2.1.1 | Ribosomal_L13 | 13 |
| 4.1.1.14 | Ribosomal_L21e | 12 |
PDB entries containing SPD
| PDB | Chains | Instances |
|---|---|---|
| 6hiz | CA, DL | 2 |
| 6i7v | DA | 3 |
| 6ikm | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R | 18 |
| 6lpv | A | 1 |
| 6lpw | B | 1 |
| 6qmm | B | 1 |
| 6sgc | 54 | 2 |
| 6tb3 | BQ | 1 |
| 6tnu | BQ | 1 |
| 6v1r | A | 1 |
| 6xxj | A, B | 2 |
| 6xxk | A, B | 2 |
| 6ye8 | A, B | 2 |
| 6yq4 | B | 1 |
| 6yxy | AA | 1 |
| 7a0s | X | 8 |
| 7a18 | V, X | 7 |
| 7a5g | A3 | 1 |
| 7a5k | A3 | 1 |
| 7a6t | A, B | 2 |