Citrus Sinensis ID: 000235
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1815 | 2.2.26 [Sep-21-2011] | |||||||
| P35084 | 1727 | DNA-directed RNA polymera | yes | no | 0.810 | 0.851 | 0.606 | 0.0 | |
| P04052 | 1887 | DNA-directed RNA polymera | yes | no | 0.952 | 0.916 | 0.538 | 0.0 | |
| P24928 | 1970 | DNA-directed RNA polymera | yes | no | 0.830 | 0.765 | 0.564 | 0.0 | |
| P08775 | 1970 | DNA-directed RNA polymera | yes | no | 0.830 | 0.765 | 0.564 | 0.0 | |
| P35074 | 1853 | DNA-directed RNA polymera | N/A | no | 0.831 | 0.814 | 0.539 | 0.0 | |
| P16356 | 1856 | DNA-directed RNA polymera | yes | no | 0.823 | 0.805 | 0.541 | 0.0 | |
| P36594 | 1752 | DNA-directed RNA polymera | yes | no | 0.831 | 0.861 | 0.555 | 0.0 | |
| Q75A34 | 1745 | DNA-directed RNA polymera | yes | no | 0.813 | 0.845 | 0.526 | 0.0 | |
| P04050 | 1733 | DNA-directed RNA polymera | yes | no | 0.820 | 0.859 | 0.523 | 0.0 | |
| Q8SSC4 | 1599 | DNA-directed RNA polymera | yes | no | 0.747 | 0.848 | 0.457 | 0.0 |
| >sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum GN=polr2a PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1910 bits (4947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1567 (60%), Positives = 1163/1567 (74%), Gaps = 96/1567 (6%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
M FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK GGL DP +GTI
Sbjct: 1 MAAFFPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
D+ +C+TC+ MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D ++H
Sbjct: 61 DKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHS 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGG----DEIDVPGQDGEEPLKKNKGGCGAQQP 176
F+QALKIRN K+RL ++D CKNK C G +E D+ D E GGCG P
Sbjct: 121 FRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLP 180
Query: 177 KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
K+T E +K+I E+K + E +E+K L+AERVL +LKRI DED + +G+NP
Sbjct: 181 KITKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINP 231
Query: 237 KYARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
+AR DWMI VLP + R DDLTH+LA I++ N L+RQE+NGAPA
Sbjct: 232 DWARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPA 291
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
HII+E Q LQFH+ATY DNE+PG P+A QRSGRP+KSI RLK KEGRIRGNLMGKRVD
Sbjct: 292 HIIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVD 351
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
FSARTVIT DP ++IDQ+GVP SIALNLTYPETVTP+NI++++EL+ GP PG AK
Sbjct: 352 FSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG---AK 408
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
YIIR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+M
Sbjct: 409 YIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVM 468
Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
PYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGI
Sbjct: 469 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGI 528
Query: 527 VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
VQDTLLG R TKRD F+EKD+ MNILMW +DGKVP P ILKP+ LWTGKQ+F+LIIP
Sbjct: 529 VQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP 588
Query: 587 KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
INL R + H D + +AGDT V IE+GELL+G LCK++LG + GS+IHV+ E G
Sbjct: 589 -DINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHG 647
Query: 647 PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
D R F+ TQ +VN+WL+ F++GIGDTIAD+ TM + TIS AKN VK LI +AQ
Sbjct: 648 HDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQ 707
Query: 707 DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
+K E +PG++++E+FE KVNQVLN ARD AGSSAQ SLSE NNLKAMVTAGSKGSFINI
Sbjct: 708 NKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINI 767
Query: 767 SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
SQM ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 768 SQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 827
Query: 827 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
GGREGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D ++
Sbjct: 828 GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFV 887
Query: 887 ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
E+Q++DSL+ +E ++ +R ++D+ ++ +M I+ ++ RD + E +++++
Sbjct: 888 ENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKS 947
Query: 947 DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
DR L EI SG+++WPLPVNL+RLI NAQK F +D RR SD++P VV ++KL RL
Sbjct: 948 DRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARL 1007
Query: 1007 KVVPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
K++ D E NAT+ F+IL+RSTFASKRVL E RLT +AF WV GE
Sbjct: 1008 KIIATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGE 1067
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
IES+FLQ+L PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+A
Sbjct: 1068 IESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA 1127
Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
K++KTPSL+++LKP + +RAK V+ LEYTTL +VT ATE++YDPDP TII ED E
Sbjct: 1128 KQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAE 1187
Query: 1178 FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFND 1237
FV SY+E+PDE+I +SPWLLRIEL+R M+ DKKL+MA + + + ++F L CIF+D
Sbjct: 1188 FVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSD 1247
Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------- 1284
DNA+KLILRIR++ + KG ND +DD FL++IESNML+EM LR
Sbjct: 1248 DNAEKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTD 1304
Query: 1285 -----------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
GV+LL VM H DVD RTTSN ++EII+VLGIEAVR
Sbjct: 1305 DKIPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRN 1364
Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
ALL ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV
Sbjct: 1365 ALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETV 1424
Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP-----SY 1436
+IL+DAA+F+E+D ++GVTENI+LGQL P+GTG ++LN +M+KNA + LP SY
Sbjct: 1425 EILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSY 1484
Query: 1437 MEGLEFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
+ TP+ S G TP+H+ +P F+ R FSP S +
Sbjct: 1485 PD-TPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFR------GDFSP-------SAMN 1530
Query: 1495 SPGYSPS 1501
SPGY+ +
Sbjct: 1531 SPGYNAN 1537
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DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6 |
| >sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila melanogaster GN=RpII215 PE=3 SV=4 | Back alignment and function description |
|---|
Score = 1892 bits (4900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1037/1924 (53%), Positives = 1332/1924 (69%), Gaps = 195/1924 (10%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S A + +V+ VQFGILSPDEIR+MSV + ++ ET E G+PK GGL DPR G IDR +
Sbjct: 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
C+TC NM ECPGHFGH++LAKP+FHIGF+ + I+R VCF CSK+L + K K+
Sbjct: 67 CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126
Query: 125 LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
+K R P+ RL + D CK KT CEGG+++D+ ++ + +P KK GGCG QP +
Sbjct: 127 MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+ + AE+K Q N+D + E+K ++AERV +LK I+DE+C +LG++PKYARP
Sbjct: 187 GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237
Query: 242 DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
DWMI+ VLP+PP VRP+ DDLTH+L+ II+ N LR+ E +GA AH+I E
Sbjct: 238 DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
++LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV G PG AKYI+RD
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+G+R+DLR+ KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415 NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
RK+TKRD FI ++ MN+LM+ +D K+PQP ILKPRPLWTGKQ+F+LIIP +N+
Sbjct: 535 TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594
Query: 592 FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
RT + H D D+G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G
Sbjct: 595 IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654
Query: 648 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
D A +F G+ Q ++N WLL SIGIGDTIAD +T I I KAK++V N+I++A +
Sbjct: 655 DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714
Query: 708 KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715 MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774
Query: 768 QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
Q+ ACVGQQNVEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775 QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834
Query: 828 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ YGEDG+ +E
Sbjct: 835 GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894
Query: 888 SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
Q + ++K+ F+K F+F+ W N M + + DD+ IKE+ D +A +Q+LEA
Sbjct: 895 FQNMPTVKLSNKSFEKRFKFD-----WSNERLMKKVFTDDV--IKEMTDSSEA-IQELEA 946
Query: 947 DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
+ +L + +I +G+S LP NL+R+IWN QK F ++ R P+D+ P+ V++ V
Sbjct: 947 EWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVK 1006
Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
L ER +V G D +S +A +NATL F L+RST +K V +E RL+ EAFEW++GEIE+
Sbjct: 1007 TLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
RF Q+ PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126
Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
K PSL+VFL G E+AKNV C LE+TTLR VT T ++YDPDP T+I ED EFV
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186
Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
YYEMPD D P +ISPWLLRIEL+R+ M DKKL+M +AEKIN F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244
Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
DKL+LRIRIMN+E K + DE+ EDD+FL+ IE+NML++M L+G+
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304
Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
+++ V+ DVD RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364
Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
AVR+++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424
Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
EETVD+L+DAA AE+D +RGV+ENI++GQL +GTG L L+ E + IE+ L +
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGN 1484
Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
M G + G TP+ +P TP+ + +P Y FSP +S +T GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTP-PMTPWAN-CNTPRY-FSPPGHVSAMTP-------GGPSF 1534
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
SP+++ S SP +SP+ PG SP+SPG S + P SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-- 1606
SP YSP+SP+YSPTSP Y+ SP Y+ T+P+++P S YSP+S YSPTSP YSPT
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQ 1650
Query: 1607 ---SPAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
SP+++ + S YSP + YSPTS
Sbjct: 1651 FQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTS 1710
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
PSYSPTSP+Y+P +PSYSPTSP+YS SP YSP SPAYS
Sbjct: 1711 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769
Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS YSP+ S YS TSP
Sbjct: 1770 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1823
Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
YSP S YSP+S YSP+SPTY+P++ +YSP+SP YSP+A YSP++P Y
Sbjct: 1824 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1875
Query: 1784 SPSS 1787
SPSS
Sbjct: 1876 SPSS 1879
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 |
| >sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1791 bits (4640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)
Query: 15 VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +C+TC N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
K RL + D CK K CEGG+E+D V +G+E L K KG GCG QP++ G++
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
+ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198 LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 245 ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
I+ VLP+PP VRP+ DDLTH+LA I++ N LRR E+NGA AH+I+E +
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKYIIRD+G
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426 RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL
Sbjct: 486 LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP IN RT
Sbjct: 546 RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605
Query: 595 AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
+ H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D
Sbjct: 606 HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I++A + L
Sbjct: 666 RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+
Sbjct: 726 EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786 AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+ +E Q
Sbjct: 846 GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
L +LK F+K FRF+ E + ++ + D+ + +++ + E +++ DR
Sbjct: 906 LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V
Sbjct: 966 LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F Q++ PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262
Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
N + K + +E +DDVFL+ IESNMLT+M L+
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322
Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382
Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
A ESD ++GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502
Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
FG P SP+ G TP++ G +P Y SP + +P G FSP+++
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552
Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
S SPGYSP+ SPG S Y P SPG SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Acts as a RNA-dependent RNA polymerase when associated with small delta antigen of Hepatitis delta virus, acting both as a replicate and transcriptase for the viral RNA circular genome. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 4 EC: 8 |
| >sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1791 bits (4640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)
Query: 15 VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +C+TC N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
K RL + D CK K CEGG+E+D V +G+E L K KG GCG QP++ G++
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
+ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198 LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 245 ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
I+ VLP+PP VRP+ DDLTH+LA I++ N LRR E+NGA AH+I+E +
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKYIIRD+G
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426 RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL
Sbjct: 486 LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP IN RT
Sbjct: 546 RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605
Query: 595 AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
+ H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D
Sbjct: 606 HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I++A + L
Sbjct: 666 RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+
Sbjct: 726 EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786 AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+ +E Q
Sbjct: 846 GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
L +LK F+K FRF+ E + ++ + D+ + +++ + E +++ DR
Sbjct: 906 LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V
Sbjct: 966 LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F Q++ PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262
Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
N + K + +E +DDVFL+ IESNMLT+M L+
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322
Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382
Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
A ESD ++GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502
Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
FG P SP+ G TP++ G +P Y SP + +P G FSP+++
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552
Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
S SPGYSP+ SPG S Y P SPG SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 |
| >sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis briggsae GN=rpb-1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1727 bits (4474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1626 (53%), Positives = 1138/1626 (69%), Gaps = 117/1626 (7%)
Query: 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
A + V VQFGIL P+EI++MSV +E E E GKPK GGL DPR G IDR+ +C TC
Sbjct: 10 APLRTVCRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKMGGLMDPRQGVIDRRGRCMTC 69
Query: 70 TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR- 128
N+ +CPGHFGHLELAKP+FHIGF+ L I+R VCF C ++L D+ + + LK
Sbjct: 70 AGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMDILKKTS 129
Query: 129 -NPKNRLKKILDACKNKTKCEGG--------DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
NPK RL I D CK+K+ CEG D++D P +G KK GCG QP
Sbjct: 130 GNPKKRLALIYDLCKSKSVCEGAAEKEDGLPDDMDDPMNEG----KKVPAGCGRYQPSYR 185
Query: 180 IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
G+ + AE+K + N+D + ERK LTAERVL V K+I+DED ++G++P++A
Sbjct: 186 RVGIDINAEWK--KNVNEDTQ------ERKIMLTAERVLEVFKQITDEDILVIGMDPQFA 237
Query: 240 RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMI VLP+PP VRP+ DDLTH+L+ II+ N+ L+R E NGA AH++
Sbjct: 238 RPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVL 297
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++ +LLQ+H+AT DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSA
Sbjct: 298 TDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSA 357
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
RTVIT DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV G PG AKYII
Sbjct: 358 RTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYII 414
Query: 410 RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
R++G R+DLRY +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+S
Sbjct: 415 RENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS 474
Query: 470 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
TFR+NLSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQD
Sbjct: 475 TFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQD 534
Query: 530 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
TL R +TKRD FI+ M++LM+ +DGKVPQP ILKP+PLWTGKQVF+LIIP +
Sbjct: 535 TLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 594
Query: 590 NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
N+ RT + H D+ D G ++ GDT V IE GELLSG +C KT+G S G+L+HV+ E+
Sbjct: 595 NVLRTHSTHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALEL 654
Query: 646 GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
G + A F H Q ++N WLL+ +IGIGDTIAD T I +TI KAK +V ++I++A
Sbjct: 655 GHEIAANFYSHIQTVINAWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKA 714
Query: 706 QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
+ LEP PG T+ ++FENKVNQ+LN ARD GSSAQKSLSE NN K+MV +GSKGS IN
Sbjct: 715 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKIN 774
Query: 766 ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
ISQ+ ACVGQQNVEGKRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHA
Sbjct: 775 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 834
Query: 826 MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W
Sbjct: 835 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 894
Query: 886 IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD-LKTIKELRD---VFDAEV 941
+E+Q + ++K + F++ FR ++ + ++ + Y +D ++ I+E +D + ++E
Sbjct: 895 VENQNMPTMKPNNAVFERDFRMDLTDN----KFLRKNYSEDVVREIQEAQDGISLVESEW 950
Query: 942 QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
+LE DR +L +I GD+ LP NL+RLIWNAQK FKVD R+P ++ P+ V+ V +
Sbjct: 951 SQLEEDR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRE 1009
Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
L ++L +V G D +S +AQ NATL NILLRST +K++ +L EAF+W++GEIE+R
Sbjct: 1010 LSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETR 1069
Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
F Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K++K
Sbjct: 1070 FQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLK 1129
Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
TPSL+VFL E+AK+V C LE+TTL+ VT T ++YDPDP T+I ED E+V
Sbjct: 1130 TPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSI 1189
Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
+YEMPD D+ + SPWLLRIEL+R+ MVDKKL+M +A++I+ F D+ I+ DDNA+
Sbjct: 1190 FYEMPDHDLT--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAE 1247
Query: 1242 KLILRIRIMNDE--APKGELNDESAEDDVFLKKIESNMLTEMALRGV------------- 1286
KL+ R+RI ++ A E + EDDVFL+ IE+NML+++ L+G+
Sbjct: 1248 KLVFRLRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNT 1307
Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
LL V+ +D RTTSN + EI EVLGIEAV
Sbjct: 1308 DDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAV 1367
Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
R+++ E+ VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEE
Sbjct: 1368 RKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEE 1427
Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
TVDIL++A+V AE D ++GV+ENIMLGQLA GTG L L+ E K+ +E+ M
Sbjct: 1428 TVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGA 1487
Query: 1440 LEFG----------MTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
+G +PA SP + TP + G SP SP+ SP + GG
Sbjct: 1488 GIYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSPSAGFSPAGNLD-----GG 1542
Query: 1488 MAFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPG-YSPTSPGYSPTSPGYSPTSPTYS 1541
SP + G+SP+SPG SP +P Y SPG YSP SPG+S TSP YSPTSP+YS
Sbjct: 1543 A--SPFNEGGWSPASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPSYS 1600
Query: 1542 PSSPGY 1547
P+SP +
Sbjct: 1601 PTSPAH 1606
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Caenorhabditis briggsae (taxid: 6238) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 |
| >sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans GN=ama-1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1723 bits (4463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1629 (54%), Positives = 1135/1629 (69%), Gaps = 134/1629 (8%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
V VQFGIL P+EI++MSV +E E E GKPK GGL DPR G IDR+ +C TC N+
Sbjct: 15 VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 74
Query: 75 ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKN 132
+CPGHFGHLELAKP+FHIGF+ L I+R VCF C ++L D+ + + LK N K
Sbjct: 75 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 134
Query: 133 RLKKILDACKNKTKCEGGDEID--------VPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
RL I D CK K+ CEG E + P DG KK GGCG QP G+
Sbjct: 135 RLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDG----KKVAGGCGRYQPSYRRVGID 190
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
+ AE+K + N+D + ERK LTAERVL V ++I+DED ++G++P++ARP+WM
Sbjct: 191 INAEWK--KNVNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 242
Query: 245 ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
I VLP+PP VRP+ DDLTH+L+ II+ N+ L+R E NGA AH++++ +
Sbjct: 243 ICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 302
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+AT DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT
Sbjct: 303 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV G PG AKYIIR++G
Sbjct: 363 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYIIRENGA 419
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLRY +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+N
Sbjct: 420 RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMN 479
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL
Sbjct: 480 LSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAV 539
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
R +TKRD FI+ M++LM+ +DGKVPQP ILKP+PLWTGKQVF+LIIP +N+ RT
Sbjct: 540 RMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRT 599
Query: 595 AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
+ H D+ D G ++ GDT V IE GELLSG +C KT+G S G+L+HV+ E+G + A
Sbjct: 600 HSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA 659
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
F H Q ++N WL++ +IGIGDTIAD T I +TI KAK +V ++I++A + L
Sbjct: 660 ANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDL 719
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EP PG T+ ++FENKVNQ+LN ARD GSSAQKSLSE NN K+MV +GSKGS INISQ+
Sbjct: 720 EPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVI 779
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGRE
Sbjct: 780 ACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 839
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q
Sbjct: 840 GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 899
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD-LKTIKELRD---VFDAEVQKLEA 946
+ ++K + F++ FR ++ + ++ + Y +D ++ I+E D + ++E +LE
Sbjct: 900 MPTMKPNNAVFERDFRMDLTDN----KFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 955
Query: 947 DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
DR +L +I GD+ LP NL+RLIWNAQK FKVD R+P ++ P+ V+ V +L ++L
Sbjct: 956 DR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 1014
Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
+V G D +S +AQ NATL NILLRST +K + + +L EAF+W++GEIESRF Q++
Sbjct: 1015 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 1074
Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+
Sbjct: 1075 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 1134
Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
VFL E+AK+V C LE+TTL+ VT T ++YDPDP T+I ED E+V +YEMP
Sbjct: 1135 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 1194
Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
D D++ + SPWLLRIEL+R+ MVDKKL+M +A++I+ F +D+ I+ DDNA+KL+ R
Sbjct: 1195 DHDLS--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFR 1252
Query: 1247 IRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------------- 1286
+RI ++ KGE +E EDDVFL+ IE+NML+++ L+G+
Sbjct: 1253 LRIAGED--KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
LL V+ +D RTTSN + EI EVLGIEAVR+A+
Sbjct: 1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370
Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
E+ VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEETVDI
Sbjct: 1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1430
Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG 1443
L++AAV AE D ++GV+ENIMLGQLA GTG L L+ E K +E+ M G +G
Sbjct: 1431 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYG 1490
Query: 1444 ----------MTPARSPVSG--TPYHDGM--------MSPGYLFSPNLRLSPVTDAQFSP 1483
+PA SP + TP + G MSPG FSP + TD SP
Sbjct: 1491 SFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSP----AGNTDGGASP 1546
Query: 1484 YVGGMAFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPG-YSPTSPGYSPTSPGYSPTS 1537
+ G G+SP+SPG SP +P Y SPG YSP+SP +S TSP YSPTS
Sbjct: 1547 FNEG---------GWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTS 1597
Query: 1538 PTYSPSSPG 1546
P+YSP+SP
Sbjct: 1598 PSYSPTSPA 1606
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 |
| >sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1711 bits (4432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 891/1604 (55%), Positives = 1128/1604 (70%), Gaps = 94/1604 (5%)
Query: 7 YSPAEV--AKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
+SP+ V +V VQFGILSP+EIR MSV +IE ET + +P+ GGL DPRLGTIDR
Sbjct: 6 FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
+ KC+TC MA+CPGHFGH+ELAKP+FHIGF+ + I+ VC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP-LKKNKGGCGAQQPKLTIE 181
+ R+PKNRL + + CK K C+ G D P GGCGA QP + +
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKD 185
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+++ + K+ D+ LPE K+ L+ V + IS ED LGLN +YARP
Sbjct: 186 GLRLWGSW----KRGKDESDLPE----KRLLSPLEVHTIFTHISSEDLAHLGLNEQYARP 237
Query: 242 DWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
DWMI+ VLP+PPP V R DDLTH+L+ II+ N N+RR E+ GAPAHI+SE
Sbjct: 238 DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
+ QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 298 YEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSART 357
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VIT DP +++D+LGVP SIA LTYPETVTPYNI +L+ELV GP P GAKYIIRD
Sbjct: 358 VITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHP---GAKYIIRD 414
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
G+R+DLRY K++ D L G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYSTF
Sbjct: 415 TGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTF 474
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDTL
Sbjct: 475 RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTL 534
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
G RK + RD F+ ++ MNI++W D+DG +P P ILKP+ LWTGKQ+ +LIIPK INL
Sbjct: 535 AGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINL 594
Query: 592 FRTAAWHADNDKGILTA-GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
R D+DK L+ D+ + IE GE++ G + KKT+G S G L+H IW+E GP+
Sbjct: 595 IR------DDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEIC 648
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
+ F Q +VNYWLL N FSIGIGDTIADA TM+ + T+ +A+ V I+ AQ L
Sbjct: 649 KGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRL 708
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
+PEPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+
Sbjct: 709 KPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMS 768
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQ VEGKRIPFGF RTLPHF KDD PESRGF+ENSYLRGLTPQEFFFHAM GRE
Sbjct: 769 ACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGRE 828
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+D+ +E Q
Sbjct: 829 GLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV 888
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
DSL++ +F+K +R ++ E+ YM +D ++D+ D E +L ADR
Sbjct: 889 FDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADREL 944
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I GD+ WPLPVN++R+I NA + F ++ ++P+D+ P +++ +++L +L +
Sbjct: 945 LCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFR 1004
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G D ++ + Q NATL F ILLRS FA KRV+ E+RL + AFEW++GE+E+RF Q++V+PG
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPSL+++L
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P + + + AKNVQ +E+TTL +VT ATE+ YDPDP T+IEED +FV++++ +PDE++
Sbjct: 1125 PWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV 1184
Query: 1191 APE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
K SPWLLR+EL+R M+DKKLSM+ VA KI + F+ DL I+++DNADKLI+R R
Sbjct: 1185 EENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCR 1244
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------------- 1286
I+ D+ K E +D E+DVFLK IE +ML ++LRGV
Sbjct: 1245 IIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTF 1304
Query: 1287 -------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
NL M E VDA RT SN +EI+++LGIEA R ALL ELR VI F
Sbjct: 1305 ERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEF 1364
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
DGSYVNYRHLA+LCD MT RGHLMAITRHGINR +TG +MRCSFEETV+IL+DAA E
Sbjct: 1365 DGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEK 1424
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN-AIELQLPSYMEGLEFGMTPARSPV- 1451
D +G++ENIMLGQLAP+GTG +YL+ +ML N ++ +P+ GM ++ P
Sbjct: 1425 DDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGS---GMGTSQLPEG 1481
Query: 1452 SGTPYHDG-MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 1510
+GTPY M+ G++ SP+ A FSP V G + Y +SP
Sbjct: 1482 AGTPYERSPMVDSGFVGSPDA-------AAFSPLVQGGSEGREGFGDYGL----LGAASP 1530
Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
SPGY TSP S SPGY TSP+YSPSSP TSPAY
Sbjct: 1531 YKGVQSPGY--TSPFSSAMSPGYGLTSPSYSPSSP-GYSTSPAY 1571
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 |
| >sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPB1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1605 bits (4157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1586 (52%), Positives = 1097/1586 (69%), Gaps = 110/1586 (6%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
FPYS A + ++ VQFG+ SP+E+R +SV +IE ET + + + K GGL+DPRLG+IDR
Sbjct: 4 FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
KC+TC M +CPGHFGH+ELAKP+FHIGF+ + + VC +C K+L DE + +
Sbjct: 64 NFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKLTIE 181
QA+KI++PK R + CK K C+ +VP +D +P K ++GGCG QP + +
Sbjct: 124 QAIKIKDPKRRFNAVWSLCKAKMVCD----TEVPSED--DPSKYISRGGCGNAQPSIRKD 177
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+ ++ +K + KN + PE K+ ++AE +L V K IS ED LG N ++RP
Sbjct: 178 GLSLVGTWK--KDKNAEDADQPE----KRIISAEEILNVFKHISPEDSWRLGFNEDFSRP 231
Query: 242 DWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
+WM+L VLP+PPPPV R DDLT++L I++ N N++R E NG+P H+I E
Sbjct: 232 EWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQE 291
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
LLQFH+ATY DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 292 SESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSART 351
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VI+ DP +++DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG AKY+IRD
Sbjct: 352 VISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRD 408
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+G R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTF
Sbjct: 409 NGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTF 468
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL
Sbjct: 469 RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTL 528
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
G RK+T RDTFIE D +N+L W D+DG +P PTILKP+PLW+GKQ+ ++ IP I+L
Sbjct: 529 CGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILKPKPLWSGKQLLSMAIPSGIHL 588
Query: 592 FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
R D L+ D + I G+++ G + KKT+G+S+G LIHV+ E GP+
Sbjct: 589 QRF-----DEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCA 643
Query: 652 KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
K G+ Q +VNYWLL N FSIGIGDTIAD KTM I D I+ AK V+ + K+AQ L
Sbjct: 644 KLFGNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLT 703
Query: 712 PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
+ G T+ ESFE+ V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+A
Sbjct: 704 AKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSA 763
Query: 772 CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
CVGQQ+VEGKRI FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREG
Sbjct: 764 CVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREG 823
Query: 832 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
LIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDGMD+ IE Q++
Sbjct: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSI 883
Query: 892 DSLKMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQK 943
D++ F+K +R ++ NPNY L E + DLK L+++ D E ++
Sbjct: 884 DTIPGSDLAFEKRYRIDL----LNPNYALDPNLLESGTEIVGDLK----LQNLLDEEYKQ 935
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
L DR+ L +I G+ +WPLPVN++R+I NAQ+TF++D +P+D+ +VV+ V LQ
Sbjct: 936 LVQDRHFL-RKIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQ 994
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
ERL V+ G+ + EAQ+NA F LLRS A++RV+ E+RLT++ FEWV+ IE++FL
Sbjct: 995 ERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFL 1054
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
+S+V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTP
Sbjct: 1055 RSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTP 1114
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+V+L+ + +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+IEED E ++ ++
Sbjct: 1115 SLTVYLEESYATDQEKAKLIRSAIEHTTLKSVTVASEIYYDPDPSSTVIEEDEEIIQLHF 1174
Query: 1184 EMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
+ DE+ + SPWLLR+EL+R M DK L+M V EKI + F +DL I+++DNA+
Sbjct: 1175 SLMDEETEASLKHQSPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAE 1234
Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------------- 1284
KLI+R R++ D PK + AE+D LKKIE+ ML + LR
Sbjct: 1235 KLIIRCRVVRD--PKTLDAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMMKYDRKV 1292
Query: 1285 ------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
GVNL VM VD R +N I+I+ VLGIEA R AL E
Sbjct: 1293 PSETGEYHKIPEWVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKE 1352
Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
+ VI+ DGSYVNYRH+A+L D MT +G LM++TRHG NR DTG +MRCSFEETV+IL +
Sbjct: 1353 VYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFE 1412
Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMT 1445
A AE D GV+EN++LGQ+APIGTG + ++DE ++K E +L + +E + G T
Sbjct: 1413 AGAAAELDDCSGVSENVILGQMAPIGTGSFDVMIDDESLIKYMPEQKLSTAVEVNDGGAT 1472
Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDA---------QFSPYVG---GMAFSPT 1493
P S G+++ L SP+ +A F+ Y G G A SP
Sbjct: 1473 PYNSDA-------GLVNTKVDIKDELMFSPLVEAGTSDAIASGGFTAYGGADYGGATSPF 1525
Query: 1494 SSPGYSPSSPGYSP-SSPGYSPTSPG 1518
S G P+SPG+ SSPG+SPTSP
Sbjct: 1526 SGYGNGPTSPGFGDVSSPGFSPTSPA 1551
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 |
| >sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1591 bits (4119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 826/1579 (52%), Positives = 1089/1579 (68%), Gaps = 89/1579 (5%)
Query: 7 YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
YS A + V+ VQFG+ SP+E+R +SV +I ET + + + K GGL+DPRLG+IDR +
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE + +QA
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
L I++ K R I CK K CE DVP +D L ++GGCG QP + +G+K
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
++ +K R D E PE + L+ E +L + K IS +D LG N ++RP+WM
Sbjct: 181 LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234
Query: 245 ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
IL LP+PPPPV R DDLT +LA I++ N +L E NGAP H I E
Sbjct: 235 ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295 LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
DP + +DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG AKY+IRD G
Sbjct: 355 GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412 RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL G
Sbjct: 472 LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
RK+T RDTFIE D +N+L W D+DG +P P I+KP+PLW+GKQ+ ++ IP I+L R
Sbjct: 532 RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR- 590
Query: 595 AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
D +L+ D + I G+++ G + KKT+G+S G LIHV+ E GP K
Sbjct: 591 ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646
Query: 655 GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
G+ Q +VN+WLL N FS GIGDTIAD TM I +TI++AK V ++ K+AQ L +
Sbjct: 647 GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706
Query: 715 GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
G T+ ESFE+ V + LN ARD+AG A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707 GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766
Query: 775 QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767 QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826
Query: 835 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+ IE Q+LD++
Sbjct: 827 TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886
Query: 895 KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
+ F+K +R ++ + +P+ + E + DLK L+ + D E ++L DR +
Sbjct: 887 GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
E+ G+++WPLPVN++R+I NAQ+TF +D +PSD+ ++V V LQE L V+
Sbjct: 942 FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G++ + AQ++A F LLRS A++RVL+E+RLT++AF+WV+ IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
PG + +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+I ED E ++ ++ + DE+
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181
Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
++ SPWLLR+EL+R M DK L+M V E+I Q F +DL I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
++ PK + AE+D LKKIE+ ML + LR
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298
Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
GVNL VM +D R +N I+I+EVLGIEA R AL E+ VI+
Sbjct: 1299 VKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A AE
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
D RGV+EN++LGQ+APIGTG + +++E ++K E ++ +G + G+TP S S
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNES 1477
Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
G D + +FSP L S DA F+ Y G G A SP + G +P+SPG+
Sbjct: 1478 GLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536
Query: 1507 PSSPGYSPTSPGYSPTSPG 1525
SSPG+SPTSP YSPTSP
Sbjct: 1537 VSSPGFSPTSPTYSPTSPA 1555
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. During a transcription cycle, Pol II, general transcription factors and the Mediator complex assemble as the preinitiation complex (PIC) at the promoter. 11-15 base pairs of DNA surrounding the transcription start site are melted and the single stranded DNA template strand of the promoter is positioned deeply within the central active site cleft of Pol II to form the open complex. After synthesis of about 30 bases of RNA, Pol II releases its contacts with the core promoter and the rest of the transcription machinery (promoter clearance) and enters the stage of transcription elongation in which it moves on the template as the transcript elongates. Pol II appears to oscillate between inactive and active conformations at each step of nucleotide addition. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Pol II is composed of mobile elements that move relative to each other. The core element with the central large cleft comprises RPB3, RBP10, RPB11, RPB12 and regions of RPB1 and RPB2 forming the active center. The clamp element (portions of RPB1, RPB2 and RPB3) is connected to the core through a set of flexible switches and moves to open and close the cleft. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. In elongating Pol II, the lid loop (RPB1) appears to act as a wedge to drive apart the DNA and RNA strands at the upstream end of the transcription bubble and guide the RNA strand toward the RNA exit groove located near the base of the largely unstructured CTD domain of RPB1. The rudder loop (RPB1) interacts with single stranded DNA after separation from the RNA strand, likely preventing reassociation with the exiting RNA. The cleft is surrounded by jaws: an upper jaw formed by portions of RBP1, RPB2 and RPB9, and a lower jaw, formed by RPB5 and portions of RBP1. The jaws are thought to grab the incoming DNA template, mainly by RPB5 direct contacts to DNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 |
| >sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1273 bits (3294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/1491 (45%), Positives = 936/1491 (62%), Gaps = 134/1491 (8%)
Query: 10 AEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCET 68
A+V K ++ +QFG+ SPDE+R SV I H E E G PK GGL D R+GT DR C++
Sbjct: 4 AKVKKQIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQS 63
Query: 69 CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI- 127
C + CPGHFGH+EL KPMFH+G++ + ++ VCF CSKI KI
Sbjct: 64 CGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-------------KIP 110
Query: 128 -RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMI 186
+ K+ L + K ++ CEG E L + GCG +QP + EG+ ++
Sbjct: 111 RKGIKSTLSNVWGMSKGRSVCEG------------EVLDNGRSGCGNKQPVIKREGLTLV 158
Query: 187 AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
A K + E E K L ERV + K+ISDED +G + KY+RP+WMIL
Sbjct: 159 AFMKGE-----------ESNEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMIL 207
Query: 247 QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
VL +PPP VRPS DDLTH+LA II+ N L++ E+ GAP HI+ ++ QLL
Sbjct: 208 TVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLL 267
Query: 297 QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
QFH+AT+ DN++ G P+A Q+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVITPD
Sbjct: 268 QFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPD 327
Query: 357 PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
P I+++++GVP IA T+PE VT +NI+RL++LV GP+ PG A Y++R DGQ++
Sbjct: 328 PNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPG---ANYVLRSDGQKI 384
Query: 417 DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLS 476
DL + SD LE GY VERH+ GD VLFNRQPSLHKMS+M H ++M TFRLNLS
Sbjct: 385 DLNF--NRSDIRLEEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLS 442
Query: 477 VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 536
VTSPYNADFDGDEMN+H+PQS+ ++AE+ EL +V + I+SPQSN+PVMGIVQDTL G R
Sbjct: 443 VTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRL 502
Query: 537 ITKRDTFIEKDVFMNILMW--------------------WEDFD--GKVPQPTILKPRPL 574
T RDTF+ + M++L +D+D + +P I KP L
Sbjct: 503 FTLRDTFLNEREVMSLLYAVNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRL 562
Query: 575 WTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST 634
WTGKQV + ++P +N ++ H D+DK GDT V I+ G + SG + KK G +
Sbjct: 563 WTGKQVLSFVLP-NLNYIGLSSEHDDDDKE--NIGDTRVIIQDGYIHSGVIDKKAAGATQ 619
Query: 635 GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISK 693
G L+H+I+ + GP A +F Q ++N ++ + FS+GIGDTIAD KT++ + I K
Sbjct: 620 GGLVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRK 679
Query: 694 AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
AK V LI+ A+ LE PG TM ESFE+ +N VLN ARD +G+SAQ+SLSE+NN+K
Sbjct: 680 AKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKT 739
Query: 754 MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
MV AGSKGSFINISQ+TACVGQQNVEGKRIPFGF RTLPHF KDDY +SRGFVENSYL
Sbjct: 740 MVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYL 799
Query: 814 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
GL P+EFFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +VR+ G V Q
Sbjct: 800 TGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQ 859
Query: 874 FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL 933
YGEDG D+ ++ESQ +D K + F E E + +E L + +L
Sbjct: 860 IKYGEDGFDATFLESQKVDVKNFTKRYYIDMFGTE--ELEIKHGQVSEEVYGMLSSDVDL 917
Query: 934 RDVFDAEVQKLEADRYQ-----LATEIATSGD--------SSWPLPVNLKRLIWNAQKTF 980
+ + D E + L + ++ E+ D S+ P N R++ A++TF
Sbjct: 918 QKLLDQEYEWLVGEIFEGPPILSVGEVDIERDYKVRDIYQSAVMSPCNFTRILATAKRTF 977
Query: 981 KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
+ D+ P ++EA L +++ N+L+R+ + KRV
Sbjct: 978 HLS---TGDVSPYYILEAHKHLTTSNRIL------------------NVLIRTNLSVKRV 1016
Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
L EHRL EAF WV+ I+++ L++ + P EM+G +AAQS+GEPATQMTLNTFH AGV A
Sbjct: 1017 LLEHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGV-A 1075
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
VT+GVPRL+EI NV K +KTPS+ ++L + E AK +Q +E T++ + +E
Sbjct: 1076 STVTMGVPRLKEIFNVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSE 1135
Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
++YDP+ GT I +D +FV++Y+E PDED+ +SP+L+R+ ++R +V + +++ VA
Sbjct: 1136 IYYDPEITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVVDRAKLVGRGINLEYVA 1195
Query: 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFL-------KKI 1273
I +E I +D+NA +++R+R E LN + + L K +
Sbjct: 1196 MFIRKELGGGAHVICSDENAVNMVVRVRTTKSEDE--SLNFYTTALNSLLRLQLGGYKNV 1253
Query: 1274 ESNMLTE--------MALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
+ ++E + G+ L ++ + V++R T SN L+EI E LGIEA R ++L
Sbjct: 1254 KKVYISEDKDRKEWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILR 1313
Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
EL +VI +GSYVNYRH+++L D MT RG+L ITRHG+N+ G + R SFEETV+ILL
Sbjct: 1314 ELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILL 1373
Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
DAA+ +E + RG+TENIM+GQLAP+GTG+ + L+ + L AI L P +
Sbjct: 1374 DAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKAIPLSNPVF 1424
|
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing. Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1815 | ||||||
| 255579596 | 1855 | DNA-directed RNA polymerase II largest s | 0.987 | 0.966 | 0.875 | 0.0 | |
| 225459758 | 1848 | PREDICTED: DNA-directed RNA polymerase I | 0.932 | 0.915 | 0.827 | 0.0 | |
| 449456849 | 1832 | PREDICTED: LOW QUALITY PROTEIN: DNA-dire | 0.957 | 0.948 | 0.855 | 0.0 | |
| 449524332 | 1853 | PREDICTED: DNA-directed RNA polymerase I | 0.927 | 0.908 | 0.829 | 0.0 | |
| 356538329 | 1827 | PREDICTED: DNA-directed RNA polymerase I | 0.973 | 0.967 | 0.857 | 0.0 | |
| 356496595 | 1827 | PREDICTED: DNA-directed RNA polymerase I | 0.974 | 0.967 | 0.851 | 0.0 | |
| 413917378 | 1850 | RNA polymerase II large subunit family p | 0.988 | 0.970 | 0.849 | 0.0 | |
| 242078217 | 1857 | hypothetical protein SORBIDRAFT_07g00368 | 0.988 | 0.966 | 0.847 | 0.0 | |
| 297603848 | 1834 | Os05g0151000 [Oryza sativa Japonica Grou | 0.885 | 0.876 | 0.831 | 0.0 | |
| 297798336 | 1839 | hypothetical protein ARALYDRAFT_491060 [ | 0.931 | 0.918 | 0.797 | 0.0 |
| >gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2999 bits (7775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1643/1877 (87%), Positives = 1726/1877 (91%), Gaps = 84/1877 (4%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIE ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
FKQALKI+NPKNRLKKILDACKNKTKCEGGD+IDV QD +EP+KK++GGCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISD+DC+LLG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 241 PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMILQVLP + R DDLTHQLAMIIRHNENL++QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L RTAAWH+D+++G++T GDTLVRIEKGELLSGT+CKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TIS AKN VK LI++AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EP+PGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LDSLKMKKSEFD+ F++E+D+ENWNP YM Q++IDDLK I+ELRDVFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L TEIAT+GDSSWPLPVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G+DPLSVEAQKNATLFF ILLRST ASKRVL+++RLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS+FL
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P N TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE+I
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
+PEKISPWLLRIELNREMMVDKKL+MA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
VNLLAVMC+E+VDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
LRGVTENIMLGQLAPIGTGDC+LYLND+MLKNAIELQLPSYM+GL+FGMTPARSPVS TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP 1500
Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT--------------SSPGYSPS 1501
YHDGMMSP YL SP+LRLSP TDAQFSPYV GM FSPT SSPGYSP+
Sbjct: 1501 YHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSPTLSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
SPGYSP+SPGYSPTSPGYSPTSP YSP+SPGYSPTSP YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
SPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP+Y SPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAY---------------------SPTS 1659
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1660 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1719
Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
PTSP+YSPTSPSYNPQSAKYSPSLAYSPSSPRLSP+SPYSPTSPNYSPTS SYSPTSPSY
Sbjct: 1720 PTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSY 1779
Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
SPSSPTYSPSSPYN+G G PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT + +DD T
Sbjct: 1780 SPSSPTYSPSSPYNSGVG-PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTQTSTKDDRT 1838
Query: 1802 TKDDKN---TKGDKSSR 1815
K D+N K +KSSR
Sbjct: 1839 DKGDRNGRDNKDEKSSR 1855
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2956 bits (7664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1528/1847 (82%), Positives = 1616/1847 (87%), Gaps = 155/1847 (8%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
FKQA KIRNPKNRLKKILDACKNK+KCEGGDEI+ D +EP+KK++GGCGAQQPKLTI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
EGMKMIAEYK QRKKNDD EQLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 241 PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMILQVLP + R DDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L RT+AWH++++ G +T GDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ AQ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LDSLKMKK EFD+ F++E+D+ENWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRG
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
VNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
LRGVTENIMLGQLAPIGTGDC+LYLND+ML++AIELQLPSYMEGL+FGMTP+RSP++GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500
Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF--------------SPTSSPGYSPS 1501
YHDGMMSP YL SPNLRLSP+TDAQFSPYVGGMAF SSPGYSP+
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG--------------- 1546
SPGYSP+SPGYSPTSPGYSPTSP YSP+SPGYSPTSP YSP+SP
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1547 ---------------------------YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
YSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTS 1680
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP YSPTSP+YSPTSPSYSPTSPSY+
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
Query: 1640 PTSPSYSPT----------------------------------------SPSYSPTSPSY 1659
P+S YSP+ SP+YSPTSP
Sbjct: 1741 PSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPTSPYN 1800
Query: 1660 SPTSP-------------AYSPTSPGYSPTSPS-YSPTSPTYSPTSP 1692
S SP YSP++PGYSP+S S Y+P SP
Sbjct: 1801 SGVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGSP 1847
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2943 bits (7629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1557/1819 (85%), Positives = 1657/1819 (91%), Gaps = 82/1819 (4%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRSVCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
FKQAL+I+NPKNRL+KILDACKNKTKCEGGDEIDV GQD ++P+KK++GGCGAQQPK++I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
EGMKM AEYKAQRKKNDD EQLPEPVERKQTLTAERVLG+LKRI+DEDC+LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 241 PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMILQVLP + R DDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P P ILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L RT+AWH++++ G +T GDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VKNLIK+AQ++SL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EPEPGRTMM+SFENKVNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LDSLKMKK EF++ FR+E ++ENW PNYML E+++DLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L TEIAT+G++SWP+PVNLKRLI NAQKTFK+D RR SDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
GEDPLSVEAQKNATLFFNILLRSTFASKRVL E+RLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P N TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALR
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
GVNLLAVM HEDVDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
LRGVTENIMLGQLAPIGTG C+LYLNDEMLKNAIELQLPSY++GL+FGMTP+RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF---------------------SPTS 1494
YH+GMMSP YL SPNLRLSP++DAQFSPYVGGMAF +
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
SPGYSP+SPGYSP+SPGYSPTSP YSP+SPGYSPTSP YSPTSP+YSP+SP YSPTSP+Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
SPTSPSYSPTSPSYSPTSPSYSP SP+YSPTSP+YSPTSP+YSPTSPSYSPTSP+YSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPXSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-------- 1666
P+YSPTSPAYSPTSP YSPTSPSYSPTSPSYSPTSPSY+P S YSP S AY
Sbjct: 1681 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP-SQAYLPSSPRLS 1739
Query: 1667 -----SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS-PSLAYSPSSPRLSPASPY 1720
SPTSP YSPTSPSYSPTSP YSP+SP+Y+P S + PS YSPSSP+ SP++ Y
Sbjct: 1740 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGY 1799
Query: 1721 SPTSPNYSPTSSS-YSPTS 1738
SPT+P YSP+S+S Y+P +
Sbjct: 1800 SPTAPGYSPSSTSQYTPQT 1818
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2943 bits (7629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1526/1839 (82%), Positives = 1614/1839 (87%), Gaps = 155/1839 (8%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRSVCFNCSKIL DE+D K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
FKQAL+I+NPKNRL+KILDACKNKTKCEGGDEIDV GQD ++P+KK++GGCGAQQPK++I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
EGMKM AEYKAQRKKNDD EQLPEPVERKQTLTAERVLG+LKRI+DEDC+LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 241 PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMILQVLP + R DDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P P ILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L RT+AWH++++ G +T GDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VKNLIK+AQ++SL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EPEPGRTMM+SFENKVNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LDSLKMKK EF++ FR+E ++ENW PNYML E+++DLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L TEIAT+G++SWP+PVNLKRLI NAQKTFK+D RR SDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
GEDPLSVEAQKNATLFFNILLRSTFASKRVL E+RLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P N TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALR
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
GVNLLAVM HEDVDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
LRGVTENIMLGQLAPIGTG C+LYLNDEMLKNAIELQLPSY++GL+FGMTP+RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF--------------SPTSSPGYSPS 1501
YH+GMMSP YL SPNLRLSP++DAQFSPYVGGMAF SSPGYSP+
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT---------------------- 1539
SPGYSP+SPGYSPTSPGYSPTSP YSP+SPGYSPTSP
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1540 --------------------YSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
YSP+SP YSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP YSPTSP+YSPTSPSYSPTSPSY+
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740
Query: 1640 PTSPSYSPTSP-------------------SYSPTSPSYSPTSPA--------------- 1665
P S YSP+ +YSPTSPSYSPTSPA
Sbjct: 1741 PQSAKYSPSQAYLPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800
Query: 1666 -------------------YSPTSPGYSPTSPS-YSPTS 1684
YSPT+PGYSP+S S Y+P +
Sbjct: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQT 1839
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2939 bits (7618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1597/1863 (85%), Positives = 1695/1863 (90%), Gaps = 96/1863 (5%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKILADE+DHK
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
FKQAL+IRNPKNRLKKILDACKNK+KCEGGDEID+PGQD +EP+KK++GGCGAQQPK+TI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
EGMKMIAEYKAQRKK+DDQEQLPEPVERKQTL+AERVLGVLKRISDEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 241 PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMILQVLP + R DDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP P ILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L R ++WH+++++G +T GDT+VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TMETIN TIS AK VK LI++AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
E EPGRTMM+SFEN+VNQ LN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LDSLKMKK+EFD+ FR+E D+ENW P YML+E ++DLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
LATEIAT+GDSS PLPVNLKRLIWNAQKTFKVD RRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
GED LS EAQKNATL FNILLRSTFASKRVL+E+RL+REAFEWV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+L+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
V TKERAK+VQCALEYTTLRSVT+ATEVWYDPDPM TIIEED +FVKSYYEMPDE++
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
A EKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LR
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
GVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
LRGVTENIMLGQLAPIGTG+C+LYLNDEMLKNAIELQLPSYM+GL+FGMTPARSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF--------------SPTSSPGYSPS 1501
YH+G+MSP YL SPNLRLSP +DAQFSPYVGGMAF SSPGYSP+
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
SPGYSP+SPGYSPTSPGYSPTSP YSP+SPGYSPTSP YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
SPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
P+YSPTSP+YSPTSP YSPTSPSYSPTSPSYSPTSPSY+P S
Sbjct: 1681 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQS------------------ 1722
Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
AKYSPSLAYSPSSPRLSP+SPYSPTSPNYSPTS SYSPTSPSY
Sbjct: 1723 -----------------AKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSY 1765
Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT-NRDDS 1800
SPSSPTYSPSSPYN+ G +PDYSPSSPQ+SPS GYSPS PGYSPSSTSQYTPQT ++DD
Sbjct: 1766 SPSSPTYSPSSPYNS-GVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDG 1824
Query: 1801 TTK 1803
T+
Sbjct: 1825 GTR 1827
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2922 bits (7574), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1590/1868 (85%), Positives = 1690/1868 (90%), Gaps = 100/1868 (5%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKILADE+DHK
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
FKQAL+IRNPKNRLKKILDACKNK+KCEGGDEID+PGQD EE +KK++GGCGAQQPK+TI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
EGMKMIAEYKAQRKK+DDQEQLPEPVERKQTL+AERVLGVLKRISDEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 241 PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMILQVLP + R DDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP P ILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L R ++WH+++++G +T GDT+VRIEKGELL+GTLCKKTLGT +G LIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TMETIN TIS AK VK LI++A +K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
E EPGR+MM+SFEN+VNQ LN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM 900
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LDSLKMKK+EFD+ FR+E D+ENW P YML+E ++DLKTI+E R+VF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ 960
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
LATEIAT+GDSS LPVNLKRLIWNAQKTFKVD RRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
GED LS EAQKNATL FNILLRSTFASKRVL+E+RL+REAFEWV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+L+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P V TKERAK+VQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
A EKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LR
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
GVNLLAVMCHEDVD RTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
LRGVTENIMLGQLAPIGTG+C+LYLNDEMLKNAIELQLPSYM+GL+FGMTPARSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF--------------SPTSSPGYSPS 1501
YH+G+MSP YL SPNLRLSP TDAQFSPYVGGMAF SSPGYSP+
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
SPGYSP+SPGYSPTSP YSP+SPGYSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1620
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
SPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTS
Sbjct: 1621 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
P+YSPTSP+YSPTSP YSPTSPSYSPTSPSYSPTSPSY+P S
Sbjct: 1681 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQS------------------ 1722
Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
AKYSPSLAYSPSSPRLSP+SPYSPTSPNYSPTS SYSPTSPSY
Sbjct: 1723 -----------------AKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSY 1765
Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
SPSSPTYSPSSPYN+ G +PDYSPSSPQ+SPS GYSPS PGYSPSSTSQYTPQT +
Sbjct: 1766 SPSSPTYSPSSPYNS-GVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQT-----S 1819
Query: 1802 TKDDKNTK 1809
KDD+ T+
Sbjct: 1820 DKDDRGTR 1827
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 2892 bits (7496), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1578/1858 (84%), Positives = 1683/1858 (90%), Gaps = 63/1858 (3%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MD RFPYSPAEVAKV VQFGILSPDEIRQMSV+QIEH ET ERGKPKPGGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVEFVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADED+ K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
FKQALKIRNPKNRLK+I DACK+K C GGD++DV QD +EP+KK +GGCGAQQP +T+
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEPIKK-RGGCGAQQPNITV 179
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
+GMKM+AE+KA +KK DDQ+QLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 180 DGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYAR 239
Query: 241 PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMILQVLP + R DDLTHQLAMIIRHNENLRRQERNGAPAHII+
Sbjct: 240 PDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT 299
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 300 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 359
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 360 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 419
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 420 EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 479
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 539
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
LLGCRKITKRDT IEKDVFMNILMWW+DFDGK+P PTILKPRP+WTGKQVFNLIIPKQIN
Sbjct: 540 LLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQIN 599
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L R +AWH++ +KG +T GDT+VRIEKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDAA
Sbjct: 600 LIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAA 659
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TMETINDTISKAKN VK LIK+A +K L
Sbjct: 660 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQL 719
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQ SLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 720 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMT 779
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 780 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 839
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 899
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LDSLKMKK EFD FR+E+D+ENW PNYML E++DDLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 900 LDSLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQ 959
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L +EI T+GD+SWP+PVNLKRLIWNAQKTFK+D RRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 960 LGSEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVP 1019
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPG
Sbjct: 1020 GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG 1079
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1080 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1139
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P VN KE AKNVQCALEYTTLRSVT ATE+WYDPDP+GTIIEED EFV+SYYEMPDEDI
Sbjct: 1140 PQVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTEFVQSYYEMPDEDI 1199
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
P+KISPWLLRIELNREMMVDKKLSMA +AEKIN+EFDDDL+CIFNDDNADKLILRIRI
Sbjct: 1200 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRIT 1259
Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
NDEAPKGE+ DESAEDDVFLKKIE NMLTEMALRG
Sbjct: 1260 NDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDDGFKA 1319
Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
VNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDH 1439
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY+EGL+FGMTPARSP++GTP
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPITGTP 1499
Query: 1456 YHDGMMSPGYLFSPNLRLSPV-TDAQFSPYVGGMAFSPTSSPGYSPSSPG--------YS 1506
YH+GMMSP YL SPN+R SP+ TDA FSPYVG MAFSP SPG S G ++
Sbjct: 1500 YHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFT 1559
Query: 1507 PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP 1566
P GYSP SP YSP SP YSPTSP Y+P SPTYSP+SP YSPTSP YSPTSPSYSPTSP
Sbjct: 1560 PEK-GYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSP 1618
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSPAYSPTSPAYSPTSP+YSP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSP 1678
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP+
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPS 1738
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
YSPTSPSYNP SAKYSPS AYSPSSPR+ SPYS TSP+YSPTS +YSPTSPSYS SP
Sbjct: 1739 YSPTSPSYNPSSAKYSPSHAYSPSSPRM---SPYSQTSPSYSPTSPTYSPTSPSYSQPSP 1795
Query: 1747 TYSPSSPYNAGGG-NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
+YSP+SP+N GG +PDYSP+SP YSPS YSP+APGYSPSST Q ++DD + +
Sbjct: 1796 SYSPTSPFNTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQ---GNDKDDKSAR 1850
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor] gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 2889 bits (7490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1580/1865 (84%), Positives = 1690/1865 (90%), Gaps = 70/1865 (3%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MD RFPYSPAEVAKV +VQFGILSPDEIRQMSVVQIEH ET ERGKPKPGGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADED+ K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
FKQALKIRNPKNRLK+I DACK+K C GGD++DV QD +EP+KK +GGCGAQQP +T+
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEPVKK-RGGCGAQQPNITV 179
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
+GMKM+AE+KA +KK+DDQ+QLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 180 DGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYAR 239
Query: 241 PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMILQVLP + R DDLTHQLAMIIRHNENLRRQERNGAPAHII+
Sbjct: 240 PDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT 299
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 300 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 359
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 360 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 419
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
+DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 420 EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 479
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 539
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
LLGCRKITKRDT IEKDVFMNILMWW+DFDGK+P P ILKPRP+WTGKQVFNLIIPKQIN
Sbjct: 540 LLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQIN 599
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L R +AWH++ +KG +T GDT+VRIEKGELLSGTLCKK+LGT TGSLIH+IWEEVGPDAA
Sbjct: 600 LIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAA 659
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TM+TINDTI KAK+ VK LIK+A +K L
Sbjct: 660 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQL 719
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 720 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 779
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 780 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 839
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 840 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 899
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LDSLKMKK EFD FR+E+D+ENW PNYML E++DDLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 900 LDSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQ 959
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L TEIAT+GD+SWP+PVNLKRLIWNAQKTF++D RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 960 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1019
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G+DP+S+EAQKNATLFFNILLRSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPG
Sbjct: 1020 GDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG 1079
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1080 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1139
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P VN KE AKNVQCALEYTTLRSVT ATE+WYDPDP+GTIIEED EFV+SYYEMPDEDI
Sbjct: 1140 PEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDI 1199
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
P+KISPWLLRIELNREMMVDKKLSMA +A+KIN+EFDDDL+CIFNDDNADKLILRIRI
Sbjct: 1200 DPDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRIT 1259
Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
NDEAPKGE+ DESAEDDVFLKKIE NMLTEMALRG
Sbjct: 1260 NDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFKA 1319
Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
VNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDH 1439
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY+EGL+FGMTPARSP+SGTP
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTP 1499
Query: 1456 YHDGMMSPGYLFSPNLRLSPV-TDAQFSPYVGGMAFSPTSSPG---------------YS 1499
YH+GMMSP YL SPN+R SP+ TDA FSPYVG MAFSP SPG ++
Sbjct: 1500 YHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFT 1559
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP 1559
P GYSP SP YSP SP YSPTSP Y+P SP YSPTSP YSP+SP YSPTSP+YSPTSP
Sbjct: 1560 PEK-GYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSP 1618
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP+YSPTSPAYSPTSP+YSP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSP 1678
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
TSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1738
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
YSPTSP+YSPTSPSYNP SAKYSPS AYSPSSPR+ +PYS TSP+YSPTS +YSPTSP
Sbjct: 1739 YSPTSPSYSPTSPSYNPSSAKYSPSHAYSPSSPRM---TPYSQTSPSYSPTSPTYSPTSP 1795
Query: 1740 SYSPSSPTYSPSSPYNAGGG-NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRD 1798
SYS SP+YSP+SP+N GG +PDYSP+SP YSPS YSP+APGYSPSST Q ++D
Sbjct: 1796 SYSQPSPSYSPTSPFNTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQ---GNDKD 1852
Query: 1799 DSTTK 1803
D + +
Sbjct: 1853 DESNR 1857
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group] gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group] gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 2860 bits (7413), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1378/1658 (83%), Positives = 1477/1658 (89%), Gaps = 51/1658 (3%)
Query: 4 RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
RFPYSPAEVAKV VQFG+LSPDEIRQMSVV IEH ET E+GKPKPGGLSDPR+GTIDRK
Sbjct: 5 RFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGTIDRK 64
Query: 64 MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADEDD KFKQ
Sbjct: 65 IKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQ 124
Query: 124 ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
ALKIRNPKN+LK+I DACKN+ C GGD +DV Q G + K +GGCGAQQP +T++GM
Sbjct: 125 ALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNITVDGM 184
Query: 184 KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
KM+AEYKA +KKNDDQEQLPEPV+RKQ L+AERVL VLK ISDEDC LLGLNPK+ARPDW
Sbjct: 185 KMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFARPDW 244
Query: 244 MILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
MILQVLP + R DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFA
Sbjct: 245 MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFA 304
Query: 294 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI
Sbjct: 305 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 364
Query: 354 TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
TPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DG
Sbjct: 365 TPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDG 424
Query: 414 QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
QRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL
Sbjct: 425 QRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 484
Query: 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG
Sbjct: 485 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 544
Query: 534 CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
CRKITKRDT IEKDVFMNILMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPKQINL R
Sbjct: 545 CRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLIR 604
Query: 594 TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
+ WH++ + +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF
Sbjct: 605 FSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 664
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
LGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN+VK LIKQ +D LE E
Sbjct: 665 LGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAE 724
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
GRT MESFEN+VN+VLN ARD AGSSA+KSLSESNNLKAM TAGSKG+FINISQMTACV
Sbjct: 725 AGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACV 784
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQNVEGKRIPFGF +RTLPHFTK+DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 785 GQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 844
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD++WIESQ LDS
Sbjct: 845 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDS 904
Query: 894 LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
LKMKK+EFD FR+E+D+ENW PNY+ ++ +DLKTI E+R+VF+AEVQKLEADR+QL T
Sbjct: 905 LKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGT 964
Query: 954 EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
EIAT+GD++WP+PVNLKRLIWNAQKTFK+D RRPSDMHPME+V+A+DKLQERLKVVPG+D
Sbjct: 965 EIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDD 1024
Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
+S+EAQKNATLFFNILLRSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPGEMI
Sbjct: 1025 DISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMI 1084
Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK IKTPSLSV LKP V
Sbjct: 1085 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEV 1144
Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
N KE AKNVQCALEYTTLRSVT ATE+WYDPDP+GTIIEED EFV+SYYEMPDEDI P+
Sbjct: 1145 NKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPD 1204
Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDL+CIFNDDNADKLILR+RI NDE
Sbjct: 1205 KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDE 1264
Query: 1254 APKGELNDESAEDDVFLKKIESNMLTEMALRG---------------------------- 1285
A KGE+ DE EDDVFLKKIESNMLTEMALRG
Sbjct: 1265 AQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFKTEKG 1324
Query: 1286 -------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYV 1338
VNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDGSYV
Sbjct: 1325 WMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYV 1384
Query: 1339 NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRG 1398
NYRHLA+LCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD LRG
Sbjct: 1385 NYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDPLRG 1444
Query: 1399 VTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG-MTPARSPVSGTPYH 1457
V+ENIMLGQLAPIGTG C LYLND+MLK AIELQLPSY+EGL+FG MT A SP+SGTPYH
Sbjct: 1445 VSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISGTPYH 1504
Query: 1458 DGMMSPGYLFSPNLRLSP-VTDAQFSPYVGGMAFSPTSSPG-YSPSS-PGYSPSSPGYSP 1514
GMMSP YL SP++R SP DAQFSPYVGGMAFSP SSPG Y+PSS GYSPS P +P
Sbjct: 1505 QGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTP 1564
Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSP-SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
++ +SP Y+P SP YSP SP P +SP Y PTS +SPTSP YS TSP YSP+SP
Sbjct: 1565 GPGSFTSSSP-YNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSP 1623
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
YSPTS SYSPTSP YSPTSP Y+PTS +YSPTSP+Y+
Sbjct: 1624 IYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN 1661
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp. lyrata] gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2859 bits (7412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1466/1839 (79%), Positives = 1574/1839 (85%), Gaps = 149/1839 (8%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
MDTRFP+SPAEV+KVR+VQFGILSPDEIRQMSV+ +EH ETTE+GKPK GGLSD RLGTI
Sbjct: 1 MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
DRK+KCETC ANMAECPGHFGHLELAKPM+H+GFMKTVLSIMR VCFNCSKILADE
Sbjct: 61 DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRN 120
Query: 121 F-KQALKIRNPKNRLKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKL 178
+QA+KI+NPKNRLKKILDACKNKTKCEGGD+ID V QD +EP+KK++GGCGAQQPKL
Sbjct: 121 LSRQAMKIKNPKNRLKKILDACKNKTKCEGGDDIDDVQNQDTDEPVKKSRGGCGAQQPKL 180
Query: 179 TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
TIEGMKMIAEYK RKKND+ +QLPEP ERKQTL A+RVL VLKRISDEDCQLLG NPK+
Sbjct: 181 TIEGMKMIAEYKIPRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKF 240
Query: 239 ARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
ARPDWMIL+VLP + R DDLTHQLAMIIRHNENL+RQE+NGAPAHI
Sbjct: 241 ARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHI 300
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
ISEF QLLQFHIATYFDNELPGQPRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFS
Sbjct: 301 ISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 360
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
ARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERL+ELV+YGPHPPPGKTGAKYI
Sbjct: 361 ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLQELVDYGPHPPPGKTGAKYI 420
Query: 409 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
IRDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPY
Sbjct: 421 IRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPY 480
Query: 469 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 481 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 540
Query: 529 DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
DTLLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQ
Sbjct: 541 DTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQ 600
Query: 589 INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
INL R +AWHAD + G +T GDT VRIE+GELL+GTLCKKTLGTS GSL+HVIWEEVGPD
Sbjct: 601 INLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPD 660
Query: 649 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
AARKFLGHTQWLVNYWLLQN F+IGIGDTIAD+ TME IN+TIS AK VK+LI+Q Q+K
Sbjct: 661 AARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEK 720
Query: 709 SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
L+PEPGRTM E+FEN+VNQVLN ARD+AGSSAQKSL+E+NNLKAMVTAGSKGSFINISQ
Sbjct: 721 KLDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQ 780
Query: 769 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
MTACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 781 MTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 840
Query: 829 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIES
Sbjct: 841 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 900
Query: 889 QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
Q LDSLKMKKSEFD+ F++E+D+ENWNP Y+ E+++DLK I+ELRDVFDAE KLE DR
Sbjct: 901 QKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDR 960
Query: 949 YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
+QL TEIAT+GDS+WPLPVN+KR IWNAQKTFK+D R+ SDMHP+E+V+AVDKLQERL V
Sbjct: 961 FQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLV 1020
Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
VPG+D LSVEAQKNATLFFNILLRST ASKRVL+E++L+REAFEWVIGEIESRFLQSLVA
Sbjct: 1021 VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA 1080
Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1140
Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
L P + +KE AK VQCALEYTTLRSVT+ATEVWYDPDPM TIIEED EFV+SYYEMPDE
Sbjct: 1141 LTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDE 1200
Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
D++P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA KLILRIR
Sbjct: 1201 DVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIR 1260
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG----------------------- 1285
IMNDE PKGEL DESAEDDVFLKKIESNMLTEMALRG
Sbjct: 1261 IMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGF 1320
Query: 1286 ------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
VNLLAVMCHEDVD +RTTSNHLIEIIEVLGIEAVRRALLDELRVVISF
Sbjct: 1321 KTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1380
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA +AE+
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAET 1440
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSG 1453
D LRGVTENIMLGQLAPIGTGDC LYLNDEMLKNAIELQLPSYM+GLEFGMTPARSPVSG
Sbjct: 1441 DCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSG 1500
Query: 1454 TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYS 1513
TPYH+GMMSP YL SPN+RLSP++DAQFSPYVGGMAFSP+SSPGYSPSSPGYSP+SPGYS
Sbjct: 1501 TPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYS 1560
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP--------------------- 1552
PTSPGYSPTSPGYSPTSP TYSPSSPGYSPTSP
Sbjct: 1561 PTSPGYSPTSPGYSPTSP-------TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1613
Query: 1553 ----------------------------AYSPTSPSYSPTSP------------------ 1566
AYSPTSP+YSPTSP
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1673
Query: 1567 ------------------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
+YSPTSP YSPTSPSYSPTSPSY PTSPSY+P S
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAK 1733
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
YSP S AYSP++ SP SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP S
Sbjct: 1734 YSP-SIAYSPSNARLSPASP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGA 1791
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSP-TYSPTSPSYNPQSAK 1700
SP YSP S GYSPT P YSP+S Y+P N ++ K
Sbjct: 1792 SPDYSP-SAGYSPTLPGYSPSSTGQYTPHEGEKNAKTGK 1829
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1815 | ||||||
| DICTYBASE|DDB_G0279193 | 1727 | rpb1 "RNA polymerase II core s | 0.706 | 0.742 | 0.623 | 0.0 | |
| UNIPROTKB|G3MZY8 | 1970 | POLR2A "DNA-directed RNA polym | 0.707 | 0.651 | 0.576 | 0.0 | |
| UNIPROTKB|F1PGS0 | 1969 | POLR2A "DNA-directed RNA polym | 0.700 | 0.646 | 0.580 | 0.0 | |
| UNIPROTKB|J9NW09 | 1789 | POLR2A "DNA-directed RNA polym | 0.700 | 0.711 | 0.580 | 0.0 | |
| RGD|1587326 | 1970 | Polr2a "polymerase (RNA) II (D | 0.700 | 0.645 | 0.580 | 0.0 | |
| UNIPROTKB|P24928 | 1970 | POLR2A "DNA-directed RNA polym | 0.700 | 0.645 | 0.580 | 0.0 | |
| MGI|MGI:98086 | 1970 | Polr2a "polymerase (RNA) II (D | 0.700 | 0.645 | 0.580 | 0.0 | |
| ZFIN|ZDB-GENE-041008-78 | 1965 | polr2a "polymerase (RNA) II (D | 0.696 | 0.643 | 0.577 | 0.0 | |
| FB|FBgn0003277 | 1887 | RpII215 "RNA polymerase II 215 | 0.715 | 0.688 | 0.565 | 0.0 | |
| POMBASE|SPBC28F2.12 | 1752 | rpb1 "RNA polymerase II large | 0.722 | 0.748 | 0.557 | 0.0 |
| DICTYBASE|DDB_G0279193 rpb1 "RNA polymerase II core subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 4220 (1490.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 827/1327 (62%), Positives = 1014/1327 (76%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK GGL DP +GTID+
Sbjct: 5 FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64
Query: 65 KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
+C+TC+ MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D ++H F+QA
Sbjct: 65 RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124
Query: 125 LKIRNPKNRLKKILDACKNKTKCE-GGDEI---DVPGQDGE--EPLKKNKGGCGAQQPKL 178
LKIRN K+RL ++D CKNK C GG+E D+ D E +P+K GGCG PK+
Sbjct: 125 LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKH--GGCGNVLPKI 182
Query: 179 TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
T E +K+I E+K + E +E+K L+AERVL +LKRI DED + +G+NP +
Sbjct: 183 TKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDW 233
Query: 239 ARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
AR DWMI VL DDLTH+LA I++ N L+RQE+NGAPAHI
Sbjct: 234 ARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHI 293
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
I+E Q LQFH+ATY DNE+PG P+A QRSGRP+KSI RLK KEGRIRGNLMGKRVDFS
Sbjct: 294 IAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFS 353
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
ARTVIT DP ++IDQ+GVP SIALNLTYPETVTP+NI++++EL+ GP PG AKYI
Sbjct: 354 ARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG---AKYI 410
Query: 409 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
IR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+MPY
Sbjct: 411 IREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPY 470
Query: 469 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
STFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGIVQ
Sbjct: 471 STFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQ 530
Query: 529 DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
DTLLG R TKRD F+EKD+ MNILMW +DGKVP P ILKP+ LWTGKQ+F+LIIP
Sbjct: 531 DTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-D 589
Query: 589 INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
INL R + H D + +AGDT V IE+GELL+G LCK++LG + GS+IHV+ E G D
Sbjct: 590 INLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHD 649
Query: 649 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
R F+ TQ +VN+WL+ F++GIGDTIAD+ TM + TIS AKN VK LI +AQ+K
Sbjct: 650 TCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNK 709
Query: 709 SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
E +PG++++E+FE KVNQVLN ARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQ
Sbjct: 710 QFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQ 769
Query: 769 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
M ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 770 MMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 829
Query: 829 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
REGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D ++E+
Sbjct: 830 REGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVEN 889
Query: 889 QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
Q++DSL+ +E ++ +R ++D+ ++ +M I+ ++ RD + E +++++DR
Sbjct: 890 QSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDR 949
Query: 949 YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
L EI SG+++WPLPVNL+RLI NAQK F +D RR SD++P VV ++KL RLK+
Sbjct: 950 SLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKI 1009
Query: 1009 VPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
+ D E NAT+ F+IL+RSTFASKRVL E RLT +AF WV GEIE
Sbjct: 1010 IATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIE 1069
Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
S+FLQ+L PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK+
Sbjct: 1070 SKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQ 1129
Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
+KTPSL+++LKP + +RAK V+ LEYTTL +VT ATE++YDPDP TII ED EFV
Sbjct: 1130 VKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFV 1189
Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
SY+E+PDE+I +SPWLLRIEL+R M+ DKKL+MA + + + ++F L CIF+DDN
Sbjct: 1190 NSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDN 1249
Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN-LLAVMCHEDVD 1298
A+KLILRIR++ + KG ND+ DD FL++IESNML+EM LRG+ + V D
Sbjct: 1250 AEKLILRIRMVESQETKGTDNDD---DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDK 1306
Query: 1299 ARRTTSN 1305
+ T N
Sbjct: 1307 IPKVTEN 1313
|
|
| UNIPROTKB|G3MZY8 POLR2A "DNA-directed RNA polymerase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 3907 (1380.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 766/1329 (57%), Positives = 982/1329 (73%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH--EDV 1297
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V CH +
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVTCHLPQTD 1315
Query: 1298 DARRTTSNH 1306
+ ++ T H
Sbjct: 1316 NKKKITMTH 1324
|
|
| UNIPROTKB|F1PGS0 POLR2A "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 3896 (1376.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
|
|
| UNIPROTKB|J9NW09 POLR2A "DNA-directed RNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 3896 (1376.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
|
|
| RGD|1587326 Polr2a "polymerase (RNA) II (DNA directed) polypeptide A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 3896 (1376.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
|
|
| UNIPROTKB|P24928 POLR2A "DNA-directed RNA polymerase II subunit RPB1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 3895 (1376.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
|
|
| MGI|MGI:98086 Polr2a "polymerase (RNA) II (DNA directed) polypeptide A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 3895 (1376.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
|
|
| ZFIN|ZDB-GENE-041008-78 polr2a "polymerase (RNA) II (DNA directed) polypeptide A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 3859 (1363.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 755/1307 (57%), Positives = 968/1307 (74%)
Query: 15 VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +C+TC N
Sbjct: 16 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGN 75
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL-KIRN-P 130
M ECPGHFGH+ELAKP+FH+GF+ ++ ++R VCF CSK+L D ++ K K L K + P
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQP 135
Query: 131 KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLK-KNKGGCGAQQPKLTIEGMKM 185
+ RL + D CK K CEGG+E+D V + E+ K K GGCG QP++ G+++
Sbjct: 136 RKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLEL 195
Query: 186 IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
AE+K N+D + E+K L+ ERV + KRI+DE+ +LG++PKYARP+WMI
Sbjct: 196 YAEWK---HVNEDSQ------EKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMI 246
Query: 246 LQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
+ VL DDLTH+LA I++ N L+R E++GA AH+I+E +L
Sbjct: 247 VTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKL 306
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQFH+AT DNELPG PRA Q+SGRP+KSI RLK KEGR+RGNLMGKRVDFSARTVITP
Sbjct: 307 LQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITP 366
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
DP + IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV G PG AKYIIRD+G R
Sbjct: 367 DPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGDR 423
Query: 416 LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
+DLR+ K SD HL++GYKVERH+ DGD ++FNRQP+LHKMS+MGHR++I+P+STFRLNL
Sbjct: 424 IDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNL 483
Query: 476 SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
SVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL R
Sbjct: 484 SVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVR 543
Query: 536 KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
K TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP IN RT
Sbjct: 544 KFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTH 603
Query: 596 AWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
+ H D D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D R
Sbjct: 604 STHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITR 663
Query: 652 KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
F + Q +VN WLL SIGIGD+IAD T + I +TI KAK +V +I++A + LE
Sbjct: 664 LFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELE 723
Query: 712 PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
P PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV AGSKGS INISQ+ A
Sbjct: 724 PTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIA 783
Query: 772 CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREG
Sbjct: 784 VVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREG 843
Query: 832 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
LIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+ +E Q +
Sbjct: 844 LIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNM 903
Query: 892 DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
+LK F+K F+F+ E + ++ + D+ T ++ + E +K+ DR ++
Sbjct: 904 ATLKPSHKAFEKKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMREDR-EI 962
Query: 952 ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
I +GDS LP NL R+IWNAQK F+++PR P+D++P VV+ V +L ++L +V G
Sbjct: 963 LRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIVNG 1022
Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
+D LS +AQ+NATL FNI LRST SKR+ +E RL+ EAF+W++GEIE++F QS+ PGE
Sbjct: 1023 DDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGE 1082
Query: 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKP 1131
M+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+VFL
Sbjct: 1083 MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLG 1142
Query: 1132 GVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIA 1191
ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YYEMPD D+
Sbjct: 1143 QAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVT 1202
Query: 1192 PEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
+ISPWLLRIEL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL+LRIRIMN
Sbjct: 1203 --RISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1260
Query: 1252 DEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+ K + ++E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1261 SDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1307
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| FB|FBgn0003277 RpII215 "RNA polymerase II 215kD subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 3850 (1360.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 759/1342 (56%), Positives = 975/1342 (72%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S A + +V+ VQFGILSPDEIR+MSV + ++ ET E G+PK GGL DPR G IDR +
Sbjct: 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
C+TC NM ECPGHFGH++LAKP+FHIGF+ + I+R VCF CSK+L + K K+
Sbjct: 67 CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126
Query: 125 LKIRN-PKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
+K R P+ RL + D CK KT CEGG+++D+ ++ + +P KK GGCG QP +
Sbjct: 127 MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+ + AE+K Q N+D + E+K ++AERV +LK I+DE+C +LG++PKYARP
Sbjct: 187 GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237
Query: 242 DWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
DWMI+ VL DDLTH+L+ II+ N LR+ E +GA AH+I E
Sbjct: 238 DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
++LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV G PG AKYI+RD
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+G+R+DLR+ KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415 NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
RK+TKRD FI ++ MN+LM+ +D K+PQP ILKPRPLWTGKQ+F+LIIP +N+
Sbjct: 535 TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594
Query: 592 FRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
RT + H D D+G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G
Sbjct: 595 IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654
Query: 648 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
D A +F G+ Q ++N WLL SIGIGDTIAD +T I I KAK++V N+I++A +
Sbjct: 655 DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714
Query: 708 KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715 MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774
Query: 768 QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
Q+ ACVGQQNVEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775 QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834
Query: 828 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ YGEDG+ +E
Sbjct: 835 GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894
Query: 888 SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
Q + ++K+ F+K F+F+ E + I ++ E +AE +L +D
Sbjct: 895 FQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSD 954
Query: 948 RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
R L +I +G+S LP NL+R+IWN QK F ++ R P+D+ P+ V++ V L ER
Sbjct: 955 RDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCV 1013
Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
+V G D +S +A +NATL F L+RST +K V +E RL+ EAFEW++GEIE+RF Q+
Sbjct: 1014 IVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQA 1073
Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1074 NPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 1133
Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
FL G E+AKNV C LE+TTLR VT T ++YDPDP T+I ED EFV YYEMPD
Sbjct: 1134 FLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPD 1193
Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
D P +ISPWLLRIEL+R+ M DKKL+M +AEKIN F +DL CIFNDDNADKL+LRI
Sbjct: 1194 FD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRI 1251
Query: 1248 RIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGVNLLA-VMCHEDVDARRTT 1303
RIMN+E K + DE+ EDD+FL+ IE+NML++M L+G+ + V H +T
Sbjct: 1252 RIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH----LPQTD 1307
Query: 1304 SNHLIEIIEVLGIEAVRRALLD 1325
S I I E +A+ LL+
Sbjct: 1308 SKKRIVITETGEFKAIGEWLLE 1329
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| POMBASE|SPBC28F2.12 rpb1 "RNA polymerase II large subunit Rpb1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 3803 (1343.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 756/1355 (55%), Positives = 971/1355 (71%)
Query: 7 YSPAEVA--KVRMVQFGILSPDEIRQMSVVQIEHGETT-ERG-KPKPGGLSDPRLGTIDR 62
+SP+ V +V VQFGILSP+EIR MSV +IE ET E G +P+ GGL DPRLGTIDR
Sbjct: 6 FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
+ KC+TC MA+CPGHFGH+ELAKP+FHIGF+ + I+ VC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP-LKKNKGGCGAQQPKLTIE 181
+ R+PKNRL + + CK K C+ G D P GGCGA QP + +
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKD 185
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+++ +K + D+ LPE K+ L+ V + IS ED LGLN +YARP
Sbjct: 186 GLRLWGSWK----RGKDESDLPE----KRLLSPLEVHTIFTHISSEDLAHLGLNEQYARP 237
Query: 242 DWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
DWMI+ VL DDLTH+L+ II+ N N+RR E+ GAPAHI+SE
Sbjct: 238 DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
+ QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 298 YEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSART 357
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VIT DP +++D+LGVP SIA LTYPETVTPYNI +L+ELV GP PG AKYIIRD
Sbjct: 358 VITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG---AKYIIRD 414
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
G+R+DLRY K++ D L G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYSTF
Sbjct: 415 TGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTF 474
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDTL
Sbjct: 475 RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTL 534
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
G RK + RD F+ ++ MNI++W D+DG +P P ILKP+ LWTGKQ+ +LIIPK INL
Sbjct: 535 AGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINL 594
Query: 592 FRTAAWHADNDKGILT-AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
R D+DK L+ D+ + IE GE++ G + KKT+G S G L+H IW+E GP+
Sbjct: 595 IR------DDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEIC 648
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
+ F Q +VNYWLL N FSIGIGDTIADA TM+ + T+ +A+ V I+ AQ L
Sbjct: 649 KGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRL 708
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
+PEPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+
Sbjct: 709 KPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMS 768
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQ VEGKRIPFGF RTLPHF KDD PESRGF+ENSYLRGLTPQEFFFHAM GRE
Sbjct: 769 ACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGRE 828
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+D+ +E Q
Sbjct: 829 GLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV 888
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
DSL++ +F+K +R ++ E+ YM +D ++D+ D E +L ADR
Sbjct: 889 FDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADREL 944
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I GD+ WPLPVN++R+I NA + F ++ ++P+D+ P +++ +++L +L +
Sbjct: 945 LCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFR 1004
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G D ++ + Q NATL F ILLRS FA KRV+ E+RL + AFEW++GE+E+RF Q++V+PG
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPSL+++L
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P + + + AKNVQ +E+TTL +VT ATE+ YDPDP T+IEED +FV++++ +PDE++
Sbjct: 1125 PWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV 1184
Query: 1191 APE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
K SPWLLR+EL+R M+DKKLSM+ VA KI + F+ DL I+++DNADKLI+R R
Sbjct: 1185 EENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCR 1244
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-NLLAVMCHEDVDARRT---TS 1304
I+ D+ K E +D E+DVFLK IE +ML ++LRGV N+ V E R+ T
Sbjct: 1245 IIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTF 1304
Query: 1305 NHLIE-IIEVLGIEAVRRALLDELRVVISFDGSYV 1338
E ++E GI ++ + ++ S+V
Sbjct: 1305 ERADEWVLETDGINLTEAMTVEGVDATRTYSNSFV 1339
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P08775 | RPB1_MOUSE | 2, ., 7, ., 7, ., 6 | 0.5641 | 0.8308 | 0.7654 | yes | no |
| P35074 | RPB1_CAEBR | 2, ., 7, ., 7, ., 6 | 0.5393 | 0.8314 | 0.8143 | N/A | no |
| P35084 | RPB1_DICDI | 2, ., 7, ., 7, ., 6 | 0.6068 | 0.8104 | 0.8517 | yes | no |
| P16356 | RPB1_CAEEL | 2, ., 7, ., 7, ., 6 | 0.5414 | 0.8236 | 0.8054 | yes | no |
| P04050 | RPB1_YEAST | 2, ., 7, ., 7, ., 6 | 0.5231 | 0.8209 | 0.8597 | yes | no |
| P04052 | RPB1_DROME | 2, ., 7, ., 7, ., 6 | 0.5389 | 0.9526 | 0.9162 | yes | no |
| P24928 | RPB1_HUMAN | 2, ., 7, ., 7, ., 4, 8 | 0.5641 | 0.8308 | 0.7654 | yes | no |
| P36594 | RPB1_SCHPO | 2, ., 7, ., 7, ., 6 | 0.5554 | 0.8319 | 0.8618 | yes | no |
| Q75A34 | RPB1_ASHGO | 2, ., 7, ., 7, ., 6 | 0.5264 | 0.8132 | 0.8458 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.963 |
| 4th Layer | 2.7.7.6 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | Sb07g003680.1 | hypothetical protein (1857 aa) | |||||||||
(Sorghum bicolor) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | Sb09g029130.1 | hypothetical protein (605 aa) | • | 0.899 | |||||||
 | Sb08g017830.1 | hypothetical protein (579 aa) | • | 0.899 | |||||||
 | Sb08g017600.1 | hypothetical protein (223 aa) | • | 0.899 | |||||||
 | Sb08g002890.1 | annotation not avaliable (528 aa) | • | 0.899 | |||||||
 | Sb07g021350.1 | hypothetical protein (526 aa) | • | 0.899 | |||||||
 | Sb06g032940.1 | hypothetical protein (514 aa) | • | 0.899 | |||||||
 | Sb04g026110.1 | hypothetical protein (983 aa) | • | 0.899 | |||||||
 | Sb04g023350.1 | hypothetical protein (185 aa) | • | 0.899 | |||||||
 | Sb03g030110.1 | hypothetical protein (580 aa) | • | 0.899 | |||||||
 | Sb03g027960.1 | hypothetical protein (608 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1815 | |||
| PRK08566 | 882 | PRK08566, PRK08566, DNA-directed RNA polymerase su | 0.0 | |
| TIGR02390 | 867 | TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymer | 0.0 | |
| COG0086 | 808 | COG0086, RpoC, DNA-directed RNA polymerase, beta' | 0.0 | |
| cd02584 | 410 | cd02584, RNAP_II_Rpb1_C, Largest subunit (Rpb1) of | 0.0 | |
| PRK14977 | 1321 | PRK14977, PRK14977, bifunctional DNA-directed RNA | 0.0 | |
| smart00663 | 295 | smart00663, RPOLA_N, RNA polymerase I subunit A N- | 1e-160 | |
| pfam04997 | 330 | pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, do | 1e-130 | |
| pfam04998 | 447 | pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, do | 1e-106 | |
| pfam04992 | 187 | pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, do | 1e-99 | |
| pfam00623 | 165 | pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, do | 7e-91 | |
| PRK04309 | 383 | PRK04309, PRK04309, DNA-directed RNA polymerase su | 5e-85 | |
| cd06528 | 363 | cd06528, RNAP_A'', A'' subunit of Archaeal RNA Pol | 2e-84 | |
| TIGR02389 | 367 | TIGR02389, RNA_pol_rpoA2, DNA-directed RNA polymer | 3e-79 | |
| pfam04990 | 135 | pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, do | 8e-73 | |
| cd02736 | 300 | cd02736, RNAP_III_Rpc1_C, Largest subunit (Rpc1) o | 9e-73 | |
| TIGR02386 | 1140 | TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, | 1e-67 | |
| PRK14897 | 509 | PRK14897, PRK14897, unknown domain/DNA-directed RN | 1e-64 | |
| cd02735 | 309 | cd02735, RNAP_I_Rpa1_C, Largest subunit (Rpa1) of | 4e-63 | |
| pfam04983 | 158 | pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, do | 4e-57 | |
| pfam04998 | 447 | pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, do | 2e-48 | |
| PRK09603 | 2890 | PRK09603, PRK09603, bifunctional DNA-directed RNA | 5e-48 | |
| pfam05000 | 108 | pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, do | 4e-47 | |
| PRK14844 | 2836 | PRK14844, PRK14844, bifunctional DNA-directed RNA | 1e-44 | |
| PRK00566 | 1156 | PRK00566, PRK00566, DNA-directed RNA polymerase su | 1e-44 | |
| PRK14977 | 1321 | PRK14977, PRK14977, bifunctional DNA-directed RNA | 2e-44 | |
| PRK14898 | 858 | PRK14898, PRK14898, DNA-directed RNA polymerase su | 8e-44 | |
| PRK14906 | 1460 | PRK14906, PRK14906, DNA-directed RNA polymerase su | 9e-43 | |
| CHL00018 | 663 | CHL00018, rpoC1, RNA polymerase beta' subunit | 6e-42 | |
| TIGR02387 | 619 | TIGR02387, rpoC1_cyan, DNA-directed RNA polymerase | 2e-41 | |
| PRK02625 | 627 | PRK02625, rpoC1, DNA-directed RNA polymerase subun | 2e-39 | |
| cd00630 | 158 | cd00630, RNAP_largest_subunit_C, Largest subunit o | 5e-39 | |
| COG0086 | 808 | COG0086, RpoC, DNA-directed RNA polymerase, beta' | 2e-26 | |
| cd00630 | 158 | cd00630, RNAP_largest_subunit_C, Largest subunit o | 6e-21 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 6e-21 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 8e-20 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-18 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 2e-18 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 9e-18 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 1e-17 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 3e-17 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 6e-17 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 8e-17 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-16 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-16 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 9e-16 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-15 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 6e-15 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-14 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-13 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 3e-13 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 4e-13 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 6e-13 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 7e-13 | |
| cd02655 | 204 | cd02655, RNAP_beta'_C, Largest subunit (beta') of | 8e-13 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 1e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 2e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 3e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 4e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 4e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 4e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 5e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 7e-12 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 8e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 9e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 9e-12 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 1e-11 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-11 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 7e-11 | |
| TIGR02386 | 1140 | TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, | 2e-10 | |
| PRK14906 | 1460 | PRK14906, PRK14906, DNA-directed RNA polymerase su | 3e-10 | |
| COG5099 | 777 | COG5099, COG5099, RNA-binding protein of the Puf f | 3e-10 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 6e-10 | |
| PRK00566 | 1156 | PRK00566, PRK00566, DNA-directed RNA polymerase su | 1e-09 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-09 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 1e-09 | |
| pfam05109 | 830 | pfam05109, Herpes_BLLF1, Herpes virus major outer | 2e-09 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-09 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-09 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 2e-09 | |
| cd02655 | 204 | cd02655, RNAP_beta'_C, Largest subunit (beta') of | 3e-09 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 3e-09 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 4e-09 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 6e-09 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 7e-09 | |
| PRK14906 | 1460 | PRK14906, PRK14906, DNA-directed RNA polymerase su | 1e-08 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 2e-08 | |
| pfam13254 | 414 | pfam13254, DUF4045, Domain of unknown function (DU | 2e-08 | |
| PRK14898 | 858 | PRK14898, PRK14898, DNA-directed RNA polymerase su | 3e-08 | |
| pfam06583 | 295 | pfam06583, Neogenin_C, Neogenin C-terminus | 3e-08 | |
| pfam12737 | 418 | pfam12737, Mating_C, C-terminal domain of homeodom | 5e-08 | |
| pfam12737 | 418 | pfam12737, Mating_C, C-terminal domain of homeodom | 5e-08 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 6e-08 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 8e-08 | |
| PRK02597 | 1331 | PRK02597, rpoC2, DNA-directed RNA polymerase subun | 8e-08 | |
| CHL00117 | 1364 | CHL00117, rpoC2, RNA polymerase beta'' subunit; Re | 9e-08 | |
| TIGR02386 | 1140 | TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, | 1e-07 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 1e-07 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 1e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 1e-07 | |
| pfam00859 | 295 | pfam00859, CTF_NFI, CTF/NF-I family transcription | 1e-07 | |
| pfam00859 | 295 | pfam00859, CTF_NFI, CTF/NF-I family transcription | 1e-07 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 2e-07 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 2e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 2e-07 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 3e-07 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 3e-07 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 3e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 3e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 3e-07 | |
| pfam00859 | 295 | pfam00859, CTF_NFI, CTF/NF-I family transcription | 3e-07 | |
| pfam05349 | 177 | pfam05349, GATA-N, GATA-type transcription activat | 3e-07 | |
| cd02737 | 381 | cd02737, RNAP_IV_NRPD1_C, Largest subunit (NRPD1) | 4e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 5e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 6e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 6e-07 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 6e-07 | |
| PRK09603 | 2890 | PRK09603, PRK09603, bifunctional DNA-directed RNA | 7e-07 | |
| TIGR02388 | 1227 | TIGR02388, rpoC2_cyan, DNA-directed RNA polymerase | 7e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 8e-07 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 8e-07 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 9e-07 | |
| COG5099 | 777 | COG5099, COG5099, RNA-binding protein of the Puf f | 1e-06 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 1e-06 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 2e-06 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 2e-06 | |
| pfam13254 | 414 | pfam13254, DUF4045, Domain of unknown function (DU | 2e-06 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 2e-06 | |
| PRK02597 | 1331 | PRK02597, rpoC2, DNA-directed RNA polymerase subun | 2e-06 | |
| TIGR02388 | 1227 | TIGR02388, rpoC2_cyan, DNA-directed RNA polymerase | 2e-06 | |
| pfam03326 | 500 | pfam03326, Herpes_TAF50, Herpesvirus transcription | 2e-06 | |
| PRK14844 | 2836 | PRK14844, PRK14844, bifunctional DNA-directed RNA | 3e-06 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-06 | |
| TIGR02388 | 1227 | TIGR02388, rpoC2_cyan, DNA-directed RNA polymerase | 3e-06 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 4e-06 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 4e-06 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 4e-06 | |
| PRK00566 | 1156 | PRK00566, PRK00566, DNA-directed RNA polymerase su | 5e-06 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 5e-06 | |
| PRK02597 | 1331 | PRK02597, rpoC2, DNA-directed RNA polymerase subun | 5e-06 | |
| pfam05349 | 177 | pfam05349, GATA-N, GATA-type transcription activat | 5e-06 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 5e-06 | |
| PRK14844 | 2836 | PRK14844, PRK14844, bifunctional DNA-directed RNA | 6e-06 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 6e-06 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 7e-06 | |
| CHL00117 | 1364 | CHL00117, rpoC2, RNA polymerase beta'' subunit; Re | 8e-06 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 9e-06 | |
| PRK09603 | 2890 | PRK09603, PRK09603, bifunctional DNA-directed RNA | 1e-05 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 1e-05 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 1e-05 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 1e-05 | |
| pfam04731 | 135 | pfam04731, Caudal_act, Caudal like protein activat | 1e-05 | |
| pfam06070 | 777 | pfam06070, Herpes_UL32, Herpesvirus large structur | 1e-05 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 1e-05 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 2e-05 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 2e-05 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 3e-05 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 3e-05 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 6e-05 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 7e-05 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 7e-05 | |
| pfam12737 | 418 | pfam12737, Mating_C, C-terminal domain of homeodom | 7e-05 | |
| pfam05349 | 177 | pfam05349, GATA-N, GATA-type transcription activat | 7e-05 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 7e-05 | |
| smart01104 | 121 | smart01104, CTD, Spt5 C-terminal nonapeptide repea | 8e-05 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 9e-05 | |
| pfam13254 | 414 | pfam13254, DUF4045, Domain of unknown function (DU | 9e-05 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 9e-05 | |
| pfam06583 | 295 | pfam06583, Neogenin_C, Neogenin C-terminus | 1e-04 | |
| pfam05349 | 177 | pfam05349, GATA-N, GATA-type transcription activat | 1e-04 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 1e-04 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 1e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 1e-04 | |
| pfam04388 | 667 | pfam04388, Hamartin, Hamartin protein | 1e-04 | |
| COG5068 | 412 | COG5068, ARG80, Regulator of arginine metabolism a | 1e-04 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 2e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 2e-04 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 2e-04 | |
| smart01104 | 121 | smart01104, CTD, Spt5 C-terminal nonapeptide repea | 2e-04 | |
| smart01104 | 121 | smart01104, CTD, Spt5 C-terminal nonapeptide repea | 2e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 2e-04 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 2e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-04 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 3e-04 | |
| pfam13254 | 414 | pfam13254, DUF4045, Domain of unknown function (DU | 3e-04 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 3e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 3e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 3e-04 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 3e-04 | |
| CHL00117 | 1364 | CHL00117, rpoC2, RNA polymerase beta'' subunit; Re | 4e-04 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 4e-04 | |
| COG5422 | 1175 | COG5422, ROM1, RhoGEF, Guanine nucleotide exchange | 4e-04 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 4e-04 | |
| PHA03132 | 580 | PHA03132, PHA03132, thymidine kinase; Provisional | 4e-04 | |
| pfam03546 | 519 | pfam03546, Treacle, Treacher Collins syndrome prot | 4e-04 | |
| pfam04484 | 313 | pfam04484, DUF566, Family of unknown function (DUF | 4e-04 | |
| PLN03209 | 576 | PLN03209, PLN03209, translocon at the inner envelo | 5e-04 | |
| PHA03269 | 566 | PHA03269, PHA03269, envelope glycoprotein C; Provi | 5e-04 | |
| smart01104 | 121 | smart01104, CTD, Spt5 C-terminal nonapeptide repea | 5e-04 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 5e-04 | |
| pfam08580 | 626 | pfam08580, KAR9, Yeast cortical protein KAR9 | 5e-04 | |
| PHA02682 | 280 | PHA02682, PHA02682, ORF080 virion core protein; Pr | 5e-04 | |
| PHA02732 | 1467 | PHA02732, PHA02732, hypothetical protein; Provisio | 5e-04 | |
| pfam06682 | 317 | pfam06682, DUF1183, Protein of unknown function (D | 5e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 6e-04 | |
| smart01104 | 121 | smart01104, CTD, Spt5 C-terminal nonapeptide repea | 6e-04 | |
| pfam08430 | 137 | pfam08430, Fork_head_N, Forkhead N-terminal region | 6e-04 | |
| pfam12533 | 120 | pfam12533, Neuro_bHLH, Neuronal helix-loop-helix t | 6e-04 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 7e-04 | |
| pfam04621 | 336 | pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain t | 7e-04 | |
| pfam09786 | 559 | pfam09786, CytochromB561_N, Cytochrome B561, N ter | 7e-04 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 8e-04 | |
| PHA02682 | 280 | PHA02682, PHA02682, ORF080 virion core protein; Pr | 8e-04 | |
| pfam03157 | 779 | pfam03157, Glutenin_hmw, High molecular weight glu | 9e-04 | |
| PRK07994 | 647 | PRK07994, PRK07994, DNA polymerase III subunits ga | 9e-04 | |
| pfam06075 | 564 | pfam06075, DUF936, Plant protein of unknown functi | 9e-04 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 0.001 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 0.001 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 0.001 | |
| pfam03251 | 458 | pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote | 0.001 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 0.001 | |
| PHA03132 | 580 | PHA03132, PHA03132, thymidine kinase; Provisional | 0.001 | |
| PHA03132 | 580 | PHA03132, PHA03132, thymidine kinase; Provisional | 0.001 | |
| pfam04484 | 313 | pfam04484, DUF566, Family of unknown function (DUF | 0.001 | |
| pfam09786 | 559 | pfam09786, CytochromB561_N, Cytochrome B561, N ter | 0.001 | |
| PHA03291 | 401 | PHA03291, PHA03291, envelope glycoprotein I; Provi | 0.001 | |
| pfam12004 | 489 | pfam12004, DUF3498, Domain of unknown function (DU | 0.001 | |
| PHA03369 | 663 | PHA03369, PHA03369, capsid maturational protease; | 0.001 | |
| PHA03369 | 663 | PHA03369, PHA03369, capsid maturational protease; | 0.001 | |
| PLN02983 | 274 | PLN02983, PLN02983, biotin carboxyl carrier protei | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 0.002 | |
| pfam05539 | 408 | pfam05539, Pneumo_att_G, Pneumovirinae attachment | 0.002 | |
| smart01104 | 121 | smart01104, CTD, Spt5 C-terminal nonapeptide repea | 0.002 | |
| smart01104 | 121 | smart01104, CTD, Spt5 C-terminal nonapeptide repea | 0.002 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 0.002 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 0.002 | |
| pfam04388 | 667 | pfam04388, Hamartin, Hamartin protein | 0.002 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 0.002 | |
| PHA03132 | 580 | PHA03132, PHA03132, thymidine kinase; Provisional | 0.002 | |
| pfam04484 | 313 | pfam04484, DUF566, Family of unknown function (DUF | 0.002 | |
| pfam04484 | 313 | pfam04484, DUF566, Family of unknown function (DUF | 0.002 | |
| PHA02682 | 280 | PHA02682, PHA02682, ORF080 virion core protein; Pr | 0.002 | |
| PHA02682 | 280 | PHA02682, PHA02682, ORF080 virion core protein; Pr | 0.002 | |
| pfam12533 | 120 | pfam12533, Neuro_bHLH, Neuronal helix-loop-helix t | 0.002 | |
| pfam12533 | 120 | pfam12533, Neuro_bHLH, Neuronal helix-loop-helix t | 0.002 | |
| PHA03291 | 401 | PHA03291, PHA03291, envelope glycoprotein I; Provi | 0.002 | |
| PHA03291 | 401 | PHA03291, PHA03291, envelope glycoprotein I; Provi | 0.002 | |
| COG5641 | 498 | COG5641, GAT1, GATA Zn-finger-containing transcrip | 0.002 | |
| PHA03379 | 935 | PHA03379, PHA03379, EBNA-3A; Provisional | 0.002 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.003 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 0.003 | |
| PLN02217 | 670 | PLN02217, PLN02217, probable pectinesterase/pectin | 0.003 | |
| pfam09786 | 559 | pfam09786, CytochromB561_N, Cytochrome B561, N ter | 0.003 | |
| PHA03291 | 401 | PHA03291, PHA03291, envelope glycoprotein I; Provi | 0.003 | |
| PHA03369 | 663 | PHA03369, PHA03369, capsid maturational protease; | 0.003 | |
| PHA03309 | 2033 | PHA03309, PHA03309, transcriptional regulator ICP4 | 0.003 | |
| PRK14906 | 1460 | PRK14906, PRK14906, DNA-directed RNA polymerase su | 0.004 | |
| pfam13254 | 414 | pfam13254, DUF4045, Domain of unknown function (DU | 0.004 | |
| smart01104 | 121 | smart01104, CTD, Spt5 C-terminal nonapeptide repea | 0.004 | |
| COG5422 | 1175 | COG5422, ROM1, RhoGEF, Guanine nucleotide exchange | 0.004 | |
| pfam04484 | 313 | pfam04484, DUF566, Family of unknown function (DUF | 0.004 | |
| pfam04484 | 313 | pfam04484, DUF566, Family of unknown function (DUF | 0.004 | |
| PHA02682 | 280 | PHA02682, PHA02682, ORF080 virion core protein; Pr | 0.004 | |
| pfam06682 | 317 | pfam06682, DUF1183, Protein of unknown function (D | 0.004 | |
| PHA03369 | 663 | PHA03369, PHA03369, capsid maturational protease; | 0.004 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 0.004 |
| >gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A'; Validated | Back alignment and domain information |
|---|
Score = 997 bits (2581), Expect = 0.0
Identities = 405/891 (45%), Positives = 561/891 (62%), Gaps = 59/891 (6%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ ++FG+LSP+EIR+MSV +I +T + G P GGL DPRLG ID ++C+TC
Sbjct: 8 RIGSIKFGLLSPEEIRKMSVTKIITADTYDDDGYPIDGGLMDPRLGVIDPGLRCKTCGGR 67
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD-----HKFKQALKI 127
ECPGHFGH+ELA+P+ H+GF K + ++R+ C C ++ E++ K ++ +
Sbjct: 68 AGECPGHFGHIELARPVIHVGFAKLIYKLLRATCRECGRLKLTEEEIEEYLEKLERLKEW 127
Query: 128 RNPKNRL-KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMI 186
+ + L K++ + C P CG +Q K+ E K
Sbjct: 128 GSLADDLIKEVKKEAAKRMVC---------------P------HCGEKQYKIKFE--KPT 164
Query: 187 AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
Y E+ E + + LT + L++I DED +LLG+NP+ ARP+WM+L
Sbjct: 165 TFY----------EERKEGLVK---LTPSDIRERLEKIPDEDLELLGINPEVARPEWMVL 211
Query: 247 QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
VLP+PP VRPS DDLTH+L IIR N+ L+ GAP II + +LL
Sbjct: 212 TVLPVPPVTVRPSITLETGQRSEDDLTHKLVDIIRINQRLKENIEAGAPQLIIEDLWELL 271
Query: 297 QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
Q+H+ TYFDNE+PG P A RSGRP+K++ RLK KEGR RGNL GKRV+FSARTVI+PD
Sbjct: 272 QYHVTTYFDNEIPGIPPARHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPD 331
Query: 357 PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
P ++I+++GVP +IA LT PE VT +NIE L+E V GP PG A Y+IR DG+R+
Sbjct: 332 PNLSINEVGVPEAIAKELTVPERVTEWNIEELREYVLNGPEKHPG---ANYVIRPDGRRI 388
Query: 417 DLRYL-KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
L K+ LE G+ VERHL DGD VLFNRQPSLH+MSIM HR++++P TFRLNL
Sbjct: 389 KLTDKNKEELAEKLEPGWIVERHLIDGDIVLFNRQPSLHRMSIMAHRVRVLPGKTFRLNL 448
Query: 476 SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
+V PYNADFDGDEMN+HVPQ+ E RAE LM+V + I+SP+ P++G +QD + G
Sbjct: 449 AVCPPYNADFDGDEMNLHVPQTEEARAEARILMLVQEHILSPRYGGPIIGGIQDHISGAY 508
Query: 536 KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
+T++ T K+ +++L + P+P I +P WTGKQ+F+L +PK +NL A
Sbjct: 509 LLTRKSTLFTKEEALDLLRAAGIDELPEPEPAIENGKPYWTGKQIFSLFLPKDLNLEFKA 568
Query: 596 A--WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
D K D V I+ G+LL G + KK +G GS++ I +E GP+ AR+F
Sbjct: 569 KICSGCDECKKEDCEHDAYVVIKNGKLLEGVIDKKAIGAEQGSILDRIVKEYGPERARRF 628
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
L L +++ F+ GI D + E I++ I +A+ V+ LI+ ++ LEP
Sbjct: 629 LDSVTRLAIRFIMLRGFTTGIDDEDIPEEAKEEIDEIIEEAEKRVEELIEAYENGELEPL 688
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
PGRT+ E+ E K+ QVL ARDEAG A+K L N M G++GS +N++QM ACV
Sbjct: 689 PGRTLEETLEMKIMQVLGKARDEAGEIAEKYLGLDNPAVIMARTGARGSMLNLTQMAACV 748
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQ+V G+RI G+ DRTLPHF D G E+RGFV +SY GLTP EFFFHAMGGREGL+
Sbjct: 749 GQQSVRGERIRRGYRDRTLPHFKPGDLGAEARGFVRSSYKSGLTPTEFFFHAMGGREGLV 808
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
DTAV+TS++GY+QRRL+ A++D+ V+YDGTVR++ G+++QF YGEDG+D +
Sbjct: 809 DTAVRTSQSGYMQRRLINALQDLKVEYDGTVRDTRGNIVQFKYGEDGVDPM 859
|
Length = 882 |
| >gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A' | Back alignment and domain information |
|---|
Score = 927 bits (2399), Expect = 0.0
Identities = 405/889 (45%), Positives = 560/889 (62%), Gaps = 60/889 (6%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
K+ ++FG+LSP+EIR+MSVV++ +T + G P GGL DPRLG I+ ++C+TC
Sbjct: 3 KIGSIKFGLLSPEEIRKMSVVEVVTADTYDDDGYPIEGGLMDPRLGVIEPGLRCKTCGGK 62
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK--FKQALKIRN- 129
+ ECPGHFGH+ELA+P+ H+GF K + I+R+ C C +I E++ + ++ K++
Sbjct: 63 VGECPGHFGHIELARPVVHVGFAKEIYKILRATCRKCGRITLTEEEIEQYLEKINKLKEE 122
Query: 130 ----PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
++KI+ + KC CG +Q K+ E
Sbjct: 123 GGDLASTLIEKIVKEAAKRMKCPH---------------------CGEEQKKIKFE---- 157
Query: 186 IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
K E+ E + LT + L++I DED +LLG+NPK ARP+WM+
Sbjct: 158 --------KPTYFYEEGKEGDVK---LTPSEIRERLEKIPDEDAELLGINPKVARPEWMV 206
Query: 246 LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
L VLP+PP VRPS DDLTH+L IIR N+ L+ GAP II + +L
Sbjct: 207 LTVLPVPPVTVRPSITLETGERSEDDLTHKLVDIIRINQRLKENIEAGAPQLIIEDLWEL 266
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ+H+ATYFDNELPG P A RSGRP+K++ RLK KEGR RGNL GKRV+FSARTVI+P
Sbjct: 267 LQYHVATYFDNELPGIPPARHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 326
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
DP I+I+++GVP IA LT PE VTP+NI+ L+E V GP PG A Y+IR DG+R
Sbjct: 327 DPNISINEVGVPEQIAKELTVPERVTPWNIDELREYVLNGPDSWPG---ANYVIRPDGRR 383
Query: 416 LDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
+ +R K LE G+ VERHL DGD VLFNRQPSLH+MS+MGH++K++P TFRLN
Sbjct: 384 IKIRDENKEELAERLEPGWVVERHLIDGDIVLFNRQPSLHRMSMMGHKVKVLPGKTFRLN 443
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
L+V PYNADFDGDEMN+HVPQ+ E RAE ELM+V + I++P+ P++G + D + G
Sbjct: 444 LAVCPPYNADFDGDEMNLHVPQTEEARAEARELMLVEEHILTPRYGGPIIGGIHDYISGA 503
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL-FR 593
+T + T K+ + ++ + G P+P I KP+ WTGKQ+F+ +P+ +N R
Sbjct: 504 YLLTHKSTLFTKEE-VQTILGVAGYFGDPPEPAIEKPKEYWTGKQIFSAFLPEDLNFEGR 562
Query: 594 TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
+D K D V I+ G+LL G + KK +G G ++H I E GP+AAR+F
Sbjct: 563 AKICSSDACKKEECPHDAYVVIKNGKLLKGVIDKKAIGAEKGKILHRIVREYGPEAARRF 622
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
L L ++ F+ GI D + E I + I KA+ V NLI++ ++ LEP
Sbjct: 623 LDSVTRLFIRFITLRGFTTGIDDIDIPKEAKEEIEELIEKAEKRVDNLIERYRNGELEPL 682
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
PGRT+ E+ E K+ +VL ARDEAG A+K L N+ M G++GS +NI+QM A V
Sbjct: 683 PGRTVEETLEMKIMEVLGKARDEAGEVAEKYLDPENHAVIMARTGARGSLLNITQMAAMV 742
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQ+V G RI G+ +RTLPHF K D G ++RGFV +S+ +GL P E+FFHA GGREGL+
Sbjct: 743 GQQSVRGGRIRRGYRNRTLPHFKKGDIGAKARGFVRSSFKKGLDPTEYFFHAAGGREGLV 802
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
DTAV+TS++GY+QRRL+ A++D+ V+YDGTVR++ G++IQF YGEDG+D
Sbjct: 803 DTAVRTSQSGYMQRRLINALQDLYVEYDGTVRDTRGNLIQFKYGEDGVD 851
|
This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein. Length = 867 |
| >gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription] | Back alignment and domain information |
|---|
Score = 782 bits (2021), Expect = 0.0
Identities = 284/880 (32%), Positives = 415/880 (47%), Gaps = 112/880 (12%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANMAEC 76
++FG+ SP+EIR +++ ET R KP+ GGL D R+ D+ +C TC C
Sbjct: 7 IKFGLASPEEIRS-WSGEVKKPETINYRTKPERGGLFDERIFGPDKDYEC-TCGKYKRIC 64
Query: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKK 136
PG FGH+ELA P+ HI F K++ S++ C +C ++L E L+ N +
Sbjct: 65 PGGFGHIELAAPVAHIWFFKSIPSLLDMTCRDCERVLYFEAYVVLGTDLEKIQLLNETEY 124
Query: 137 ILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
+ D + C CGA+ K+ +E + E +
Sbjct: 125 VYD-----SFC---------------------AHCGAEAIKILLEKPDLETERE------ 152
Query: 197 DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
++TL+ +V +LKR+ D LL N RP+WMIL VLP+PPP +
Sbjct: 153 ------------EETLSPTKVKKLLKRLKVVDAFLLSGN----RPEWMILTVLPVPPPDL 196
Query: 257 RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
RPS DL +I N L+R AP I+ ++LQ + FDN
Sbjct: 197 RPSIQLDGGRFAESDLNDLYRRVINRNNRLKRLLELAAP-IIVRNEKRMLQEAVDALFDN 255
Query: 307 ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
+PRA GRP+KS+ RLK K+GR R NL+GKRVD+S R+VI+ P + ++Q GV
Sbjct: 256 ---RRPRAVTG-GRPLKSLSQRLKGKQGRFRQNLLGKRVDYSGRSVISVGPNLKLNQCGV 311
Query: 367 PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
P +AL L P VT NIE L+ TGAKY R +RL
Sbjct: 312 PKKMALELFKPFVVTELNIEGLR-------------TGAKYAKRMVERRLPE-------- 350
Query: 427 HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADF 485
+ V R + DGD VL NR P+LH++SIM ++P RL+ V YNADF
Sbjct: 351 -----VWDVLREVIDGDPVLLNRAPTLHRLSIMQAFEPVLPEGKAIRLHPLVCEAYNADF 405
Query: 486 DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
DGDEM +HVP S E AE LM I++P P++ +QDT+ G +T D +
Sbjct: 406 DGDEMAVHVPASGEAAAEARGLMGTQMNILTPHYGGPIVAPIQDTVGGPYLLTIVDAKLP 465
Query: 546 KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP--KQINLFRTAAWHADNDK 603
I + E D + I K L TGK + + I P ++++ T ++
Sbjct: 466 STPVGEIYLKDEYADDREKAEAIAKKIELTTGKVIVSTISPDLAELSIIVTTDGRRIFNR 525
Query: 604 GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
G+ D LV+I G+L+ K + ++ EV A K L L N
Sbjct: 526 GLPEDKDVLVKIVNGKLI-----KGVIDKKIVTIYREYGPEVASKALVKLL---DKLKNL 577
Query: 664 WLLQNA-FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
+ F IGIG D + + ++ + +A+ +V LI Q ++ L ++E
Sbjct: 578 GIKGIGGFGIGIGR--KDIEAEDEKDEIVIEAEGSVLKLILQYEEGDLTRTERNNIVEII 635
Query: 723 ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
E + L A E + + G G+ +NISQ+ +GQQ V G++
Sbjct: 636 EVLGIEALRNAIIEEIKITLEEQGLDFV--DIRHMGLSGARMNISQIVQLIGQQGVMGEK 693
Query: 783 IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
I F E+ G E+S+L GLT E+F H +GGR GL+DTA+KT+++
Sbjct: 694 ISVL----ARAAFEVTVKHLEAEGPGESSFLEGLTENEYFGHPIGGRTGLVDTALKTADS 749
Query: 843 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
GY+ RRLV +D++V+ D V + +G VIQF YGEDG D
Sbjct: 750 GYLTRRLVDVAQDLIVQEDDCVTDGIGVVIQFEYGEDGED 789
|
Length = 808 |
| >gnl|CDD|132720 cd02584, RNAP_II_Rpb1_C, Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain | Back alignment and domain information |
|---|
Score = 740 bits (1913), Expect = 0.0
Identities = 265/414 (64%), Positives = 319/414 (77%), Gaps = 40/414 (9%)
Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
+RL +EAF+W++GEIE+RF +SLV PGEM+G +AAQSIGEPATQMTLNTFH+AGVSAKNV
Sbjct: 1 YRLNKEAFDWILGEIETRFNRSLVHPGEMVGTIAAQSIGEPATQMTLNTFHFAGVSAKNV 60
Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
TLGVPRL+EIINVAK IKTPSL+V+L+PG +E+AK +Q LE+TTL+ VT ATE++Y
Sbjct: 61 TLGVPRLKEIINVAKNIKTPSLTVYLEPGFAKDEEKAKKIQSRLEHTTLKDVTAATEIYY 120
Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKI 1223
DPDP T+IEED EFV+SY+E PDED+ +++SPWLLRIEL+R+ M DKKLSM +A+KI
Sbjct: 121 DPDPQNTVIEEDKEFVESYFEFPDEDVEQDRLSPWLLRIELDRKKMTDKKLSMEQIAKKI 180
Query: 1224 NQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL 1283
+EF DDL IF+DDNA+KL++RIRI+ND+ K E + EDDVFLKKIESNML++M L
Sbjct: 181 KEEFKDDLNVIFSDDNAEKLVIRIRIINDDEEKEEDS----EDDVFLKKIESNMLSDMTL 236
Query: 1284 R------------------------------------GVNLLAVMCHEDVDARRTTSNHL 1307
+ GVNL V+ H VD RTTSN +
Sbjct: 237 KGIEGIRKVFIREENKKKVDIETGEFKKREEWVLETDGVNLREVLSHPGVDPTRTTSNDI 296
Query: 1308 IEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1367
+EI EVLGIEA R+ALL ELR VISFDGSYVNYRHLA+LCD MT RGHLMAITRHGINR
Sbjct: 297 VEIFEVLGIEAARKALLKELRNVISFDGSYVNYRHLALLCDVMTQRGHLMAITRHGINRQ 356
Query: 1368 DTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
DTGP+MRCSFEETVDILL+AA F E+D L+GV+ENIMLGQLAPIGTG L L+
Sbjct: 357 DTGPLMRCSFEETVDILLEAAAFGETDDLKGVSENIMLGQLAPIGTGCFDLLLD 410
|
RNA polymerase II (RNAP II) is a large multi-subunit complex responsible for the synthesis of mRNA. RNAP II consists of a 10-subunit core enzyme and a peripheral heterodimer of two subunits. The largest core subunit (Rpb1) of yeast RNAP II is the best characterized member of this family. Structure studies suggest that RNAP complexes from different organisms share a crab-claw-shape structure. In yeast, Rpb1 and Rpb2, the largest and the second largest subunits, each makes up one clamp, one jaw, and part of the cleft. Rpb1 interacts with Rpb2 to form the DNA entry and RNA exit channels in addition to the catalytic center of RNA synthesis. The C-terminal domain of Rpb1 makes up part of the foot and jaw structures. Length = 410 |
| >gnl|CDD|184940 PRK14977, PRK14977, bifunctional DNA-directed RNA polymerase A'/A'' subunit; Provisional | Back alignment and domain information |
|---|
Score = 721 bits (1862), Expect = 0.0
Identities = 365/914 (39%), Positives = 509/914 (55%), Gaps = 81/914 (8%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANMAEC 76
+ FG++SP + R++ +I E E G P GGL D RLGTI+ KC TC A C
Sbjct: 12 IIFGLISPADARKIGFAEITAPEAYDEDGLPVQGGLLDGRLGTIEPGQKCLTCGNLAANC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR------NP 130
PGHFGH+ELA+P+ HI F+ + ++ S C C+K+ ++D + ++ P
Sbjct: 72 PGHFGHIELAEPVIHIAFIDNIKDLLNSTCHKCAKLKLPQEDLNVFKLIEEAHAAARDIP 131
Query: 131 KNRL-KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
+ R+ +I++ +++ K + P CGA Q +L E + E
Sbjct: 132 EKRIDDEIIEEVRDQVKVYAKKAKECPH-------------CGAPQHELEFEEPTIFIEK 178
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
E E + L + + ++I D+D +L+G +PK ARP+W +LQ
Sbjct: 179 -------------TEIEEHR--LLPIEIRDIFEKIIDDDLELIGFDPKKARPEWAVLQAF 223
Query: 250 PIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
+PP RPS DDLTH L II+ N+ L+ + GAP I+ + LQ+H
Sbjct: 224 LVPPLTARPSIILETGERSEDDLTHILVDIIKANQKLKESKDAGAPPLIVEDEVDHLQYH 283
Query: 300 IATYFDNELPGQPRATQR-SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
+T+FDN G P+A + SGRP+KS+ RLK KEGR RGNL+GKRVDFSARTVI+PDP
Sbjct: 284 TSTFFDNATAGIPQAHHKGSGRPLKSLFQRLKGKEGRFRGNLIGKRVDFSARTVISPDPM 343
Query: 359 INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
I+ID++GVP +IA+ LT PE V NIE++KELV GP PG A I + DG ++ L
Sbjct: 344 IDIDEVGVPEAIAMKLTIPEIVNENNIEKMKELVINGPDEFPG---ANAIRKGDGTKIRL 400
Query: 419 RYLKKSSD-------HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+L+ LE+G VERHL DGD V+FNRQPSLHK+SI+ HR+K++P +TF
Sbjct: 401 DFLEDKGKDALREAAEQLEIGDIVERHLADGDIVIFNRQPSLHKLSILAHRVKVLPGATF 460
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RL+ +V PYNADFDGDEMN+HVPQ + RAE +ELM V ++SP++ P++G +QD +
Sbjct: 461 RLHPAVCPPYNADFDGDEMNLHVPQIEDARAEAIELMGVKDNLISPRTGGPIIGALQDFI 520
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTI-LKPRPLWTGKQVFNLIIPKQIN 590
ITK D +K+ NI M +P+P I K P WTGKQ+F+L +PK N
Sbjct: 521 TAAYLITKDDALFDKNEASNIAM-LAGITDPLPEPAIKTKDGPAWTGKQLFSLFLPKDFN 579
Query: 591 LFRTAAWH---ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTG---SLIHVIWEE 644
A W A K GD V I++GEL+SG + +G SLI I ++
Sbjct: 580 FEGIAKWSAGKAGEAKDPSCLGDGYVLIKEGELISGVIDDNIIGALVEEPESLIDRIAKD 639
Query: 645 VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
G A +FL + +L FS G GD I + + I D I K+ V +LI Q
Sbjct: 640 YGEAVAIEFLNKILIIAKKEILHYGFSNGPGDLIIPDEAKQEIEDDIQGMKDEVSDLIDQ 699
Query: 705 AQDK--------SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
+ E G E+ E + L+ ARD+AGSSA + N K M
Sbjct: 700 RKITRKITIYKGKEELLRGMKEEEALEADIVNELDKARDKAGSSANDCIDADNAGKIMAK 759
Query: 757 AGSKGSFINISQMTACVGQQNVE--------GKRIPFGFVDRTLPHFTKDDYGPESRGFV 808
G++GS N++Q+ +GQQ + G R+ G+ DR L HF + D P++ GFV
Sbjct: 760 TGARGSMANLAQIAGALGQQKRKTRIGFVLTGGRLHEGYKDRALSHFQEGDDNPDAHGFV 819
Query: 809 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 868
+N+Y GL EFFFHAMGGREGLID A +T ++GY QRRL A+EDI ++YD TVR+
Sbjct: 820 KNNYREGLNAAEFFFHAMGGREGLIDKARRTEDSGYFQRRLANALEDIRLEYDETVRDPH 879
Query: 869 GDVIQFLYGEDGMD 882
G +IQF +GEDG+D
Sbjct: 880 GHIIQFKFGEDGID 893
|
Length = 1321 |
| >gnl|CDD|214767 smart00663, RPOLA_N, RNA polymerase I subunit A N-terminus | Back alignment and domain information |
|---|
Score = 490 bits (1265), Expect = e-160
Identities = 170/305 (55%), Positives = 216/305 (70%), Gaps = 21/305 (6%)
Query: 242 DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
+WMIL VLP+PPP +RPS DDLTH L II+ N L+R GAP+ II
Sbjct: 1 EWMILTVLPVPPPCLRPSVQLDGGRFAEDDLTHLLRDIIKRNNRLKRLLELGAPSIIIRN 60
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
+LLQ + T DNE G PRA Q+SGRP+KS+ RLK KEGR R NL+GKRVDFSAR+
Sbjct: 61 EKRLLQEAVDTLIDNE--GLPRANQKSGRPLKSLSQRLKGKEGRFRQNLLGKRVDFSARS 118
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VITPDP + ++++GVP IAL LT+PE VTP NI++L++LV GP GAKYIIR
Sbjct: 119 VITPDPNLKLNEVGVPKEIALELTFPEIVTPLNIDKLRKLVRNGP------NGAKYIIR- 171
Query: 412 DGQRLDLRYLKKS-SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
G++ +L+ KKS +HL++G VERH+ DGD VLFNRQP+LH+MSI HR++++ T
Sbjct: 172 -GKKTNLKLAKKSKIANHLKIGDIVERHVIDGDVVLFNRQPTLHRMSIQAHRVRVLEGKT 230
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
RLN V SPYNADFDGDEMN+HVPQS E RAE ELM+VP I+SP++ +P++G +QD
Sbjct: 231 IRLNPLVCSPYNADFDGDEMNLHVPQSLEARAEARELMLVPNNILSPKNGKPIIGPIQDM 290
Query: 531 LLGCR 535
LLG
Sbjct: 291 LLGLY 295
|
Length = 295 |
| >gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1 | Back alignment and domain information |
|---|
Score = 409 bits (1053), Expect = e-130
Identities = 162/344 (47%), Positives = 211/344 (61%), Gaps = 33/344 (9%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKMKCETCTA 71
K++ +QFGI SP+EIR+ SV ++ ET KP+PGGL D R+GTI +K CETC
Sbjct: 3 KIKEIQFGIASPEEIRKWSVGEVTKPETYNYGSLKPEPGGLLDERMGTIKKKSICETCGV 62
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF----KQALKI 127
+ ECPGHFGH+ELAKP+FHIGF K +LSI+R VC CS +L +E F K
Sbjct: 63 EVTECPGHFGHIELAKPVFHIGFFKKILSILRCVCKLCSSLLLNESVKYFFLKVVIDPKG 122
Query: 128 RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG-MKMI 186
+N K RLKKI + CK K+ C E K GCG QPK++ +G +
Sbjct: 123 KNSKKRLKKINNLCKKKSICSKCGED--------NGGLKAFEGCGKYQPKISKDGAEAIK 174
Query: 187 AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
A K + ++ + E+ + L E+VL + K+IS ED ++LG NP RP+WMIL
Sbjct: 175 ALLK--NIEIEELK------EKLRKLNPEKVLQIFKKISKEDEEILGFNPSGNRPEWMIL 226
Query: 247 QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
VLP+PPP +RPS DDLTH+L II+ N L++ GAP+HII E +LL
Sbjct: 227 TVLPVPPPCIRPSVQLDGGRFAEDDLTHKLRDIIKRNNRLKKMLEEGAPSHIIREEKRLL 286
Query: 297 QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
Q H+AT FDN++PGQP A Q+SGRP+KSI RLK KEGR RGNL
Sbjct: 287 QEHVATLFDNDIPGQPPALQKSGRPLKSISQRLKGKEGRFRGNL 330
|
RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand. Length = 330 |
| >gnl|CDD|147266 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5 | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-106
Identities = 142/378 (37%), Positives = 203/378 (53%), Gaps = 19/378 (5%)
Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
KL+++ K+ + L + +TL F ILLRS SKRV E +A +
Sbjct: 85 LKLEKKFKIDLNDVLLLLSEFSLSTLLFEILLRSGIESKRVRSELTCNSKAGVCFLCYGR 144
Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
++ +SLV PGE +G +AAQSIGEP TQMTLNTFH+AGV++KNVTLGVPRL+EIINVAK
Sbjct: 145 DKYRRSLVEPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLKEIINVAKN 204
Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
K P ++V L + S K R K + L+ VT ++YD D T+I++D +V
Sbjct: 205 NKKPVITVLLIKNIVSDKARVKKQREEKTLLLLKKVTIIIVIYYDDDSESTVIKKDRIWV 264
Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
+Y+ +P+E E+++ ++ I + K A EK +E + L
Sbjct: 265 LAYFVIPEEVA--EEVALAIIIIGKRKSRKRKKNNLGVAKDEKGLEEEELLLLN------ 316
Query: 1240 ADKLILRIRIMNDEAPKGELND--ESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHE-D 1296
IL + L D + E + TE G NL AVM +
Sbjct: 317 ---KILLVIPGIKVKYGVILTDGRVDPHTILEKLGKEWLLKTE----GNNLQAVMRLQGV 369
Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
+D +T SN + E+++ LGIEA R ++L E+R V FDG YVN RHLA+L D MT++G L
Sbjct: 370 IDNDKTYSNDIREMLKKLGIEAARDSILLEIRNVFKFDGIYVNRRHLALLADLMTFKGEL 429
Query: 1357 MAITRHGINRNDT-GPMM 1373
+ ITR G+NR + +M
Sbjct: 430 LGITRAGLNREKSSFILM 447
|
RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound. Length = 447 |
| >gnl|CDD|218368 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6 | Back alignment and domain information |
|---|
Score = 317 bits (815), Expect = 1e-99
Identities = 97/187 (51%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
Query: 881 MDSVWIESQTLDSLKMKKSEFDKAFRFEM--DEENWNPNYMLQEYIDDLKTIKELRDVFD 938
MD ++E Q LD+LK+ + F+K +R ++ +E + P + ++ + +L E++ + D
Sbjct: 1 MDGAFVEKQKLDTLKLSDAAFEKKYRVDLMDPDEGFLPGVLDEDVVKELLGDAEVQKLLD 60
Query: 939 AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
E ++L DR L EI GDS WPLPVNL+R+IWNAQK F +D R+PSD+HP+ V+E
Sbjct: 61 EEYEQLLEDRRLLREEIFPDGDSKWPLPVNLQRIIWNAQKIFHIDRRKPSDLHPVYVIEG 120
Query: 999 VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
V +L +RL VV G+DPLS EAQ+NATL F ILLRST ASKRVL+E+RL +EAF+WV+GEI
Sbjct: 121 VRELLDRLVVVRGDDPLSKEAQENATLLFKILLRSTLASKRVLEEYRLNKEAFDWVLGEI 180
Query: 1059 ESRFLQS 1065
ESRF Q+
Sbjct: 181 ESRFNQA 187
|
RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 6, represents a mobile module of the RNA polymerase. Domain 6 forms part of the shelf module. This family appears to be specific to the largest subunit of RNA polymerase II. Length = 187 |
| >gnl|CDD|216030 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2 | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 7e-91
Identities = 100/169 (59%), Positives = 122/169 (72%), Gaps = 4/169 (2%)
Query: 342 GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
GKRVDFS R+VITPDP + +D++GVP +AL LT PE VT NI++L++LV GP+ PPG
Sbjct: 1 GKRVDFSGRSVITPDPNLKLDEVGVPIEMALELTKPEIVTKLNIKKLRKLVSNGPNVPPG 60
Query: 402 KTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
AKYI R G + DL Y K+ + L G V RH+ DGD VL NRQP+LH+MSIM H
Sbjct: 61 ---AKYIKRIKGAKRDLEYKKRIAIE-LWYGDIVLRHVIDGDVVLLNRQPTLHRMSIMAH 116
Query: 462 RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
R +++ T RLN SV SPYNADFDGDEMN+HVPQS E RAE ELM+V
Sbjct: 117 RPRVLEGKTIRLNPSVCSPYNADFDGDEMNLHVPQSEEARAEARELMLV 165
|
RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site. The invariant motif -NADFDGD- binds the active site magnesium ion. Length = 165 |
| >gnl|CDD|235277 PRK04309, PRK04309, DNA-directed RNA polymerase subunit A''; Validated | Back alignment and domain information |
|---|
Score = 283 bits (727), Expect = 5e-85
Identities = 150/403 (37%), Positives = 213/403 (52%), Gaps = 77/403 (19%)
Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
L+E +LT E E +I E+ +L+SLV PGE +G VAAQSIGEP TQMT+ TFHYAGV+
Sbjct: 30 LEERKLTEEEVEEIIEEVVREYLRSLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAE 89
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
NVTLG+PRL EI++ K+ TP ++++LK +E+A+ V +E TTL ++ +
Sbjct: 90 INVTLGLPRLIEIVDARKEPSTPMMTIYLKDEYAYDREKAEEVARKIEATTLENLAKDIS 149
Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
V D M TII IEL+ EM+ D+ L++ V
Sbjct: 150 V--DLANM-TII-----------------------------IELDEEMLEDRGLTVDDVK 177
Query: 1221 EKINQEF-------DDDLTCIFNDDNADKL------ILRIRIMNDEAPKGELNDESAEDD 1267
E I ++ + L + + +L I I+I KG
Sbjct: 178 EAIEKKKGGEVEIEGNTLIISPKEPSYRELRKLAEKIRNIKI------KG---------- 221
Query: 1268 VFLKKI----------ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
+K I E + TE G NL V+ E VDA RTT+N++ EI EVLGIE
Sbjct: 222 --IKGIKRVIIRKEGDEYVIYTE----GSNLKEVLKVEGVDATRTTTNNIHEIEEVLGIE 275
Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
A R A+++E++ + G V+ RH+ ++ D MT+ G + I RHG++ + R +F
Sbjct: 276 AARNAIIEEIKNTLEEQGLDVDIRHIMLVADMMTWDGEVRQIGRHGVSGEKASVLARAAF 335
Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1420
E TV LLDAAV E D L+GVTENI++GQ P+GTGD L +
Sbjct: 336 EVTVKHLLDAAVRGEVDELKGVTENIIVGQPIPLGTGDVELTM 378
|
Length = 383 |
| >gnl|CDD|132725 cd06528, RNAP_A'', A'' subunit of Archaeal RNA Polymerase (RNAP) | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 2e-84
Identities = 144/394 (36%), Positives = 212/394 (53%), Gaps = 53/394 (13%)
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
VLKEH LT E +I E+ +L+SL+ PGE +G VAAQSIGEP TQMTL TFHYAGV+
Sbjct: 10 VLKEHGLTLSEAEEIIKEVLREYLRSLIEPGEAVGIVAAQSIGEPGTQMTLRTFHYAGVA 69
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
NVTLG+PRL EI++ K+ TP+++++L+ +E+A+ V +E TTL ++ E
Sbjct: 70 EINVTLGLPRLIEIVDARKEPSTPTMTIYLEEEYKYDREKAEEVARKIEETTLENLAEDI 129
Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
+ D M I IEL+ EM+ D+ +++ V
Sbjct: 130 SI--DLFNM-RIT-----------------------------IELDEEMLEDRGITVDDV 157
Query: 1220 AEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVF------LKKI 1273
+ I + + + + ++L+ +E EL + + +K I
Sbjct: 158 LKAIEKLK---KGKVGEEGDVTLIVLKA----EEPSIKEL--RKLAEKILNTKIKGIKGI 208
Query: 1274 ESNML----TEMAL--RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
+ ++ E + G NL AV+ E VD RTT+N++ EI EVLGIEA R A+++E+
Sbjct: 209 KRVIVRKEEDEYVIYTEGSNLKAVLKVEGVDPTRTTTNNIHEIEEVLGIEAARNAIINEI 268
Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
+ + G V+ RH+ ++ D MTY G + I RHGI + R +FE TV LLDA
Sbjct: 269 KRTLEEQGLDVDIRHIMLVADIMTYDGEVRQIGRHGIAGEKPSVLARAAFEVTVKHLLDA 328
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
AV E D LRGV ENI++GQ P+GTGD L ++
Sbjct: 329 AVRGEVDELRGVIENIIVGQPIPLGTGDVELTMD 362
|
Archaeal RNA polymerase (RNAP), like bacterial RNAP, is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. The relative positioning of the RNAP core is highly conserved between archaeal RNAP and the three classes of eukaryotic RNAPs. In archaea, the largest subunit is split into two polypeptides, A' and A'', which are encoded by separate genes in an operon. Sequence alignments reveal that the archaeal A'' subunit corresponds to the C-terminal one-third of the RNAPII largest subunit (Rpb1). In subunit A'', several loops in the jaw domain are shorter. The RNAPII Rpb1 interacts with the second-largest subunit (Rpb2) to form the DNA entry and RNA exit channels in addition to the catalytic center of RNA synthesis. Length = 363 |
| >gnl|CDD|233842 TIGR02389, RNA_pol_rpoA2, DNA-directed RNA polymerase, subunit A'' | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 3e-79
Identities = 135/392 (34%), Positives = 200/392 (51%), Gaps = 54/392 (13%)
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
V K +E + +I +E +L+SL+ PGE +G VAAQSIGEP TQMT+ TFHYAGV+
Sbjct: 14 VKKREISDKEELDEIIKRVEEEYLRSLIDPGEAVGIVAAQSIGEPGTQMTMRTFHYAGVA 73
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
NVTLG+PRL EI++ K TPS++++L+ +E+A+ V +E T L V +
Sbjct: 74 ELNVTLGLPRLIEIVDARKTPSTPSMTIYLEDEYEKDREKAEEVAKKIEATKLEDVAKDI 133
Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
+ D+A + IEL+ E + ++ +++ V
Sbjct: 134 SI---------------------------DLADMTV-----IIELDEEQLKERGITVDDV 161
Query: 1220 AEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI------ 1273
+ I + L + D D + I+ + K + ++ +K I
Sbjct: 162 EKAIKKAK---LGKVIEIDM-DGNTITIKP-PKPSLKELRKLKEKIKNLHIKGIKGIKRV 216
Query: 1274 -------ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
E + TE G NL V+ E VD RTT+N + EI EVLGIEA R A+++E
Sbjct: 217 VIRKEGDEYVIYTE----GSNLKEVLKLEGVDKTRTTTNDIHEIAEVLGIEAARNAIIEE 272
Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
++ + G V+ RHL ++ D MT+ G + I RHGI+ + R +FE TV LLD
Sbjct: 273 IKRTLEEQGLDVDIRHLMLVADLMTWDGEVRQIGRHGISGEKASVLARAAFEVTVKHLLD 332
Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
AA+ E D L GV ENI++GQ P+GTGD L
Sbjct: 333 AAIRGEVDELAGVIENIIVGQPIPLGTGDVDL 364
|
This family consists of the archaeal A'' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein [Transcription, DNA-dependent RNA polymerase]. Length = 367 |
| >gnl|CDD|218366 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7 | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 8e-73
Identities = 81/135 (60%), Positives = 109/135 (80%)
Query: 1150 TTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
TTLRSVT +TE++YDPDP T+IEED E+V+SY+E+PDED P ++SPWLLR+EL+RE M
Sbjct: 1 TTLRSVTASTEIYYDPDPRNTVIEEDREWVESYFEIPDEDDDPSRLSPWLLRLELDREKM 60
Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVF 1269
DKKL+M +A+KI QEF DDL I++DDNA+KL++RIR+ +DE K + + EDDVF
Sbjct: 61 TDKKLTMKDIAQKIKQEFGDDLHVIYSDDNAEKLVIRIRVKDDEGEKEDSVGDEDEDDVF 120
Query: 1270 LKKIESNMLTEMALR 1284
LK++ESNML+ + LR
Sbjct: 121 LKRLESNMLSSLTLR 135
|
RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 7, represents a mobile module of the RNA polymerase. Domain 7 forms a substantial interaction with the lobe domain of Rpb2 (pfam04561). Length = 135 |
| >gnl|CDD|132723 cd02736, RNAP_III_Rpc1_C, Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain | Back alignment and domain information |
|---|
Score = 244 bits (626), Expect = 9e-73
Identities = 114/357 (31%), Positives = 184/357 (51%), Gaps = 62/357 (17%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
+++++ V PG +G +AAQSIGEP TQMTL TFH+AGV++ N+TLGVPR++EIIN +K I
Sbjct: 1 KYMRAKVEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI 60
Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
TP ++ L+ + ++ A+ V+ +E T L V E Y PD
Sbjct: 61 STPIITAKLEN--DRDEKSARIVKGRIEKTYLGEVASYIEEVYSPD-------------- 104
Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ---EFDDDLTCIFND 1237
Y + I+L+++++ +LS + + + + D + +
Sbjct: 105 DCY----------------ILIKLDKKIIEKLQLSKSNLYFLLQSLKRKLPDVVVSGIPE 148
Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDV 1297
R I N + KG+ ++ + G L AVM V
Sbjct: 149 VK------RAVI-NKDKKKGKY--------------------KLLVEGYGLRAVMNTPGV 181
Query: 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1357
RTTSNH++E+ +VLGIEA R +++E++ + G ++ RH+ +L D MT++G ++
Sbjct: 182 IGTRTTSNHIMEVEKVLGIEAARSTIINEIQYTMKSHGMSIDPRHIMLLADLMTFKGEVL 241
Query: 1358 AITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
ITR GI + +M SFE+T D L +AA+ D + GV+E I++G+ PIGTG
Sbjct: 242 GITRFGIAKMKESVLMLASFEKTTDHLFNAALHGRKDSIEGVSECIIMGKPMPIGTG 298
|
Eukaryotic RNA polymerase III (RNAP III) is a large multi-subunit complex responsible for the synthesis of tRNAs, 5SrRNA, Alu-RNA, U6 snRNA, among others. Rpc1 is also known as C160 in yeast. Structure studies suggest that different RNA polymerase complexes share a similar crab-claw-shape structure. The C-terminal domain of Rpb1, the largest subunit of RNAP II, makes up part of the foot and jaw structures of RNAP II. The similarity between this domain and the C-terminal domain of Rpb1, its counterpart in RNAP II, suggests a similar functional and structural role. Length = 300 |
| >gnl|CDD|233840 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit, predominant form | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 1e-67
Identities = 237/907 (26%), Positives = 379/907 (41%), Gaps = 197/907 (21%)
Query: 21 GILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTID---------RKMK--- 65
I SPD IR S +++ ET KP+ GL ++ G +K++
Sbjct: 5 SIASPDTIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECYCGKYKKIRYKG 64
Query: 66 --CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIM-----------RSVCFNC 109
CE C + E GH+ELA P+ HI + K + S + SV +
Sbjct: 65 VVCERCGVEVTESKVRRERMGHIELAAPVAHIWYFKGLPSRIGLLLDITAKELESVLYFE 124
Query: 110 SKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG 169
+ ++ D D K + ++ + + + K GD
Sbjct: 125 NYVVLDPGDTKLDKK-EVLD----ETEYREVLKRY-----GDGFRA-------------- 160
Query: 170 GCGAQQPKLTIEGM---KMIAEYKAQ-RKKNDDQEQLPEPVERKQTLTAERVLGVLKRIS 225
G GA+ K +E + K I E K Q R+ DQ+ RK+ L ++ K
Sbjct: 161 GMGAEAIKELLEKIDLDKEIEELKIQLRESKSDQK-------RKKLLKRLEIVEAFKDSG 213
Query: 226 DEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNEN 275
RP+WM+L V+P+ PP +RP + DL +I N
Sbjct: 214 -------------NRPEWMVLDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNR 260
Query: 276 LRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGR 335
L+R GAP I+ ++LQ + FDN G+P ++ RP+KS+ LK K+GR
Sbjct: 261 LKRLLELGAPEIIVRNEKRMLQEAVDALFDNGRRGKP-VVGKNNRPLKSLSDMLKGKQGR 319
Query: 336 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
R NL+GKRVD+S R+VI P + + Q G+P +AL L P+ I+RL +
Sbjct: 320 FRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKKMALEL-----FKPFIIKRLIDR---- 370
Query: 396 PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455
K+ K I ++D + D+ LE K E VL NR P+LH+
Sbjct: 371 ELAANIKSAKKMIEQEDPEVWDV----------LEDVIK-EHP------VLLNRAPTLHR 413
Query: 456 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
+ I ++ RL+ V + +NADFDGD+M +HVP S E +AE LM+ I+
Sbjct: 414 LGIQAFEPVLVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSPEAQAEARALMLASNNIL 473
Query: 516 SPQSNRPVMGIVQDTLLGCRKIT--KRDTFIEKDVFMNI---LMWWEDFDGKVPQPTILK 570
+P+ +P++ QD +LG +T K E +F N+ + ++ +GKV ++
Sbjct: 474 NPKDGKPIVTPSQDMVLGLYYLTTEKPGAKGEGKIFSNVDEAIRAYD--NGKVHLHALIG 531
Query: 571 PRP----LWT--GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGT 624
R L T G+ +FN I+P+ I E LS
Sbjct: 532 VRTSGEILETTVGRVIFNEILPEGFPY-----------------------INDNEPLS-- 566
Query: 625 LCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTM 684
KK + SLI +++E G + + L + L + ++ +I D + +
Sbjct: 567 --KKEI----SSLIDLLYEVHGIEETAEMLDKIKALGFKYATKSGTTISASDIVVPDEKY 620
Query: 685 ETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKS 744
E + + A V + K + E KV + + +D+ + K
Sbjct: 621 EILKE----ADKEVAKIQKFYNKGLITDEERY-------RKVVSIWSETKDKVTDAMMKL 669
Query: 745 LS----ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDY 800
L + N + M +G++G NISQ G + + K P G + K
Sbjct: 670 LKKDTYKFNPIFMMADSGARG---NISQFRQLAGMRGLMAK--PSG---DIIELPIK--- 718
Query: 801 GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY 860
+S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+
Sbjct: 719 ---------SSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVVVRE 769
Query: 861 D--GTVR 865
+ GT
Sbjct: 770 EDCGTEE 776
|
Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain [Transcription, DNA-dependent RNA polymerase]. Length = 1140 |
| >gnl|CDD|237853 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase subunit A'' fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 1e-64
Identities = 125/445 (28%), Positives = 204/445 (45%), Gaps = 49/445 (11%)
Query: 981 KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
+D + E + E + + L +++ +
Sbjct: 98 ILDENMSFSTGELLTAE-EKEYYEENSNEDVLKVIDDVKKLGFRLPPSVIEEIA----KA 152
Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
+K+ L+ + +E ++ I + ++ V P E +G VAAQSIGEP TQMT+ TFHYAGV+
Sbjct: 153 MKKKELSDDEYEEILRRIREEYERARVDPYEAVGIVAAQSIGEPGTQMTMRTFHYAGVAE 212
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
NVTLG+PRL EI++ KK TP+++++LK +E+ + V +E TTL V
Sbjct: 213 MNVTLGLPRLIEIVDARKKPSTPTMTIYLKKDYREDEEKVREVAKKIENTTLIDVA---- 268
Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
+ + EM + +EL+ E M ++ + +
Sbjct: 269 ----------------DIITDIAEMS-------------VVVELDEEKMKERLIEYDDIL 299
Query: 1221 EKINQ------EFDDDLTCI-FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI 1273
I++ E DD + + + KL ++ ++ + +K
Sbjct: 300 AAISKLTFKTVEIDDGIIRLKPQQPSFKKL----YLLAEKVKSLTIKGIKGIKRAIARKE 355
Query: 1274 ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
+ +G NL V+ ++VD RT +N +IEI VLGIEA R A++ E + +
Sbjct: 356 NDERRWVIYTQGSNLKDVLEIDEVDPTRTYTNDIIEIATVLGIEAARNAIIHEAKRTLQE 415
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
G V+ RH+ ++ D MT+ G + AI RHGI+ + + R +FE T LL A + E
Sbjct: 416 QGLNVDIRHIMLVADMMTFDGSVKAIGRHGISGEKSSVLARAAFEITGKHLLRAGILGEV 475
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSL 1418
D L GV ENI++GQ +GTG SL
Sbjct: 476 DKLAGVAENIIVGQPITLGTGAVSL 500
|
Length = 509 |
| >gnl|CDD|132722 cd02735, RNAP_I_Rpa1_C, Largest subunit (Rpa1) of Eukaryotic RNA polymerase I (RNAP I), C-terminal domain | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 4e-63
Identities = 119/367 (32%), Positives = 176/367 (47%), Gaps = 66/367 (17%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KK 1119
++++SLV PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ A K
Sbjct: 1 KYMRSLVEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKN 60
Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE-- 1177
IKTPS+++ LK G + ERA+ ++ L TL V E EV I + +E
Sbjct: 61 IKTPSMTLPLKNGKS--AERAETLKKRLSRVTLSDVVEKVEVTE--------ILKTIERV 110
Query: 1178 FVKSYYEMPDEDIAPEKISPWL-LRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
F K + W + I+L KL + ++ EK+
Sbjct: 111 FKKLLGK-------------WCEVTIKLPLSS---PKLLLLSIVEKL------------- 141
Query: 1237 DDNADKLILRIRIMNDEAP---KGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMC 1293
A K ++R E P + + +E I GVNL A+
Sbjct: 142 ---ARKAVIR------EIPGITRCFVVEEDKGGKTKYLVIT---------EGVNLAALWK 183
Query: 1294 HED-VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTY 1352
D +D R +N + ++ GIEA RRA++ E+ V G V+ RHL+++ D MT+
Sbjct: 184 FSDILDVNRIYTNDIHAMLNTYGIEAARRAIVKEISNVFKVYGIAVDPRHLSLIADYMTF 243
Query: 1353 RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIG 1412
G R G+ + T P+ + SFE T+ L A + + D L + +++G+ G
Sbjct: 244 EGGYRPFNRIGMESS-TSPLQKMSFETTLAFLKKATLNGDIDNLSSPSSRLVVGKPVNGG 302
Query: 1413 TGDCSLY 1419
TG L
Sbjct: 303 TGLFDLL 309
|
RNA polymerase I (RNAP I) is a multi-subunit protein complex responsible for the synthesis of rRNA precursor. It consists of at least 14 different subunits, and the largest one is homologous to subunit Rpb1 of yeast RNAP II and subunit beta' of bacterial RNAP. Rpa1 is also known as Rpa190 in yeast. Structure studies suggest that different RNAP complexes share a similar crab-claw-shape structure. The C-terminal domain of Rpb1, the largest subunit of RNAP II, makes up part of the foot and jaw structures of RNAP II. The similarity between this domain and the C-terminal domain of Rpb1, its counterpart in RNAP II, suggests a similar functional and structural role. Length = 309 |
| >gnl|CDD|218361 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3 | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 4e-57
Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 513 CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKP- 571
I+SPQ+ +P++G QD +LG +T+RDTF +++ M +LM+ P P ILKP
Sbjct: 1 NILSPQNGKPIIGPSQDMVLGLYLLTRRDTFFDREEVMQLLMYGIVL----PHPAILKPI 56
Query: 572 RPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLG 631
+PLWTGKQ F+ ++P +IN + + L D+ V I GEL+SG + KK G
Sbjct: 57 KPLWTGKQTFSRLLPNEINPKGKPKTNEE----TLCENDSYVLINNGELISGVIDKKLGG 112
Query: 632 TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
S GSLIH+I++E GP+ KFL Q L +L ++ FSIGI D
Sbjct: 113 KSLGSLIHIIYKEYGPEETVKFLDRLQKLGFRYLTKSGFSIGIDDI 158
|
RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking. Length = 158 |
| >gnl|CDD|147266 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5 | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 2e-48
Identities = 64/124 (51%), Positives = 84/124 (67%), Gaps = 4/124 (3%)
Query: 815 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 874
GLTPQEFFFH MGGREGLIDTAVKT+ETGY+QRRLVKA+ED++V+YD TVRNS G+++QF
Sbjct: 1 GLTPQEFFFHTMGGREGLIDTAVKTAETGYLQRRLVKALEDLVVQYDDTVRNSGGEIVQF 60
Query: 875 LYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF----EMDEENWNPNYMLQEYIDDLKTI 930
LYGEDG+D + IE Q +++ + +K F+ + + L I I
Sbjct: 61 LYGEDGLDPLKIEGQGRFTIEDSDLKLEKKFKIDLNDVLLLLSEFSLSTLLFEILLRSGI 120
Query: 931 KELR 934
+ R
Sbjct: 121 ESKR 124
|
RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound. Length = 447 |
| >gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed | Back alignment and domain information |
|---|
Score = 190 bits (483), Expect = 5e-48
Identities = 172/646 (26%), Positives = 276/646 (42%), Gaps = 120/646 (18%)
Query: 240 RPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WM+L VLP+ PP +RP D+ +I N+ L+R GAP I+
Sbjct: 1622 RPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIV 1681
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSG--RPIKSICSRLKAKEGRIRGNLMGKRVDF 347
++LQ + FDN G+ + RP+KS+ +K K+GR R NL+GKRVDF
Sbjct: 1682 RNEKRMLQEAVDVLFDN---GRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDF 1738
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
S R+VI P + +D+ G+P ++AL E P+ + +L+E
Sbjct: 1739 SGRSVIVVGPNLKMDECGLPKNMAL-----ELFKPHLLSKLEE----------------- 1776
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
G L+ K+ + ++ + + +G VL NR P+LHK SI K++
Sbjct: 1777 ----RGYATTLKQAKRMIEQKSNEVWECLQEITEGYPVLLNRAPTLHKQSIQAFHPKLID 1832
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+L+ V S +NADFDGD+M +HVP S E AE LM+ I+ P S + V
Sbjct: 1833 GKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKAVAIPS 1892
Query: 528 QDTLLGCRKIT--KRDTFIEKDVFMN---ILMWWE----DFDGKVPQPTILKPRPLWT-- 576
QD +LG ++ K E +F + I+ + D K+ + + + T
Sbjct: 1893 QDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAIDTKELDIHAKI--RVLDQGNIIATSA 1950
Query: 577 GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
G+ + I+P + T W+ + KK +G
Sbjct: 1951 GRMIIKSILP---DFIPTDLWNR------------------------PMKKKDIGV---- 1979
Query: 637 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
L+ + + G FL + + L + A GI ++ D T + + KAK
Sbjct: 1980 LVDYVHKVGGIGITATFLDNLKTLG----FRYATKAGISISMEDIITPKDKQKMVEKAKV 2035
Query: 697 NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSES----NNLK 752
VK I+Q D+ L + R NK+ D+ ++++ N++
Sbjct: 2036 EVKK-IQQQYDQGLLTDQERY------NKIIDTWTEVNDKMSKEMMTAIAKDKEGFNSIY 2088
Query: 753 AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
M +G++GS I Q++A G P G + T P F E
Sbjct: 2089 MMADSGARGSAAQIRQLSAMRGLMTK-----PDGSIIET----------PIISNFKE--- 2130
Query: 813 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
GL E+F G R+GL DTA+KT+ GY+ R+L+ +++ V
Sbjct: 2131 --GLNVLEYFNSTHGARKGLADTALKTANAGYLTRKLIDVSQNVKV 2174
|
Length = 2890 |
| >gnl|CDD|218372 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4 | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 4e-47
Identities = 64/108 (59%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 702 IKQAQDKS-LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
I A+ LE G T+ E+FE +N +LN ARD AG+ A KSL +N++ M +G+K
Sbjct: 1 ITDAERYGKLEDIWGMTLEETFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAK 60
Query: 761 GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 808
GS INISQ+ C GQQNVEGKRIPFGF RTLPHF KDD GPESRGFV
Sbjct: 61 GSIINISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV 108
|
RNA polymerases catalyze the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel domain. The funnel contain the binding site for some elongation factors. Length = 108 |
| >gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (454), Expect = 1e-44
Identities = 185/669 (27%), Positives = 284/669 (42%), Gaps = 132/669 (19%)
Query: 240 RPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMIL +PI PP +RP DL H II N LR+ P +I
Sbjct: 1665 RPEWMILTTIPILPPDLRPLVSLESGRPAVSDLNHHYRTIINRNNRLRKLLSLNPPEIMI 1724
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRP--IKSICSRLKAKEGRIRGNLMGKRVDF 347
++LQ + + FDN + ++G KSI LK K+GR R NL+GKRVD+
Sbjct: 1725 RNEKRMLQEAVDSLFDNSR--RNALVNKAGAVGYKKSISDMLKGKQGRFRQNLLGKRVDY 1782
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
S R+VI PT+ ++Q G+P +AL E P+ +LK YG P K +K
Sbjct: 1783 SGRSVIVVGPTLKLNQCGLPKRMAL-----ELFKPFVYSKLKM---YG-MAPTIKFASKL 1833
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
I + + D+ L ++ H VL NR P+LH++ I ++
Sbjct: 1834 IRAEKPEVWDM------------LEEVIKEHP-----VLLNRAPTLHRLGIQAFEPILIE 1876
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+L+ V + +NADFDGD+M +HVP S E + E LMM ++SP + RP++
Sbjct: 1877 GKAIQLHPLVCTAFNADFDGDQMAVHVPISLEAQLEARVLMMSTNNVLSPSNGRPIIVPS 1936
Query: 528 QDTLLGCRKIT----KRD------TFIEKDVFMN-----------ILMWWEDFDGKVPQP 566
+D +LG +T K D F E + ++ M + + G+
Sbjct: 1937 KDIVLGIYYLTLQEPKEDDLPSFGAFCEVEHSLSDGTLHIHSSIKYRMEYINSSGETHYK 1996
Query: 567 TILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLC 626
TI G+ + I PK NL +L++ L
Sbjct: 1997 TICTT----PGRLILWQIFPKHENL-------------------------GFDLINQVLT 2027
Query: 627 KKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
K + S++ +++ G A F + L+ FS G+ + D ET
Sbjct: 2028 VKEI----TSIVDLVYRNCGQSATVAF---SDKLMVLGFEYATFS-GVSFSRCDMVIPET 2079
Query: 687 INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL- 745
+ A+ +K Q QD + T E + NKV + D + K++
Sbjct: 2080 KATHVDHARGEIKKFSMQYQDGLI------TRSERY-NKVIDEWSKCTDMIANDMLKAIS 2132
Query: 746 -----SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDY 800
S+ N++ MV +G++GS SQM G + + K P G + T
Sbjct: 2133 IYDGNSKYNSVYMMVNSGARGS---TSQMKQLAGMRGLMTK--PSGEIIET--------- 2178
Query: 801 GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVK 859
P F E GL E+F G R+GL DTA+KT+ +GY+ RRLV ++ I+ K
Sbjct: 2179 -PIISNFRE-----GLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQNCIVTK 2232
Query: 860 YDGTVRNSL 868
+D +N L
Sbjct: 2233 HDCKTKNGL 2241
|
Length = 2836 |
| >gnl|CDD|234794 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 1e-44
Identities = 202/677 (29%), Positives = 307/677 (45%), Gaps = 165/677 (24%)
Query: 240 RPDWMILQVLPIPPPPVRP-----------SD--DLTHQLAMIIRHNENLRRQERNGAPA 286
+P+WMIL VLP+ PP +RP SD DL ++ I R N L+R GAP
Sbjct: 223 KPEWMILDVLPVIPPDLRPLVQLDGGRFATSDLNDLYRRV--INR-NNRLKRLLELGAPE 279
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
I+ ++LQ + FDN G+P T + RP+KS+ LK K+GR R NL+GKRVD
Sbjct: 280 IIVRNEKRMLQEAVDALFDNGRRGRP-VTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVD 338
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
+S R+VI P + + Q G+P +AL L P +K+LVE G K+ K
Sbjct: 339 YSGRSVIVVGPELKLHQCGLPKKMALELFKPFI--------MKKLVERG-LATTIKSAKK 389
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVER-HLNDGDFVLFNRQPSLHKMSIM------ 459
+ R+D + D LE +V + H VL NR P+LH++ I
Sbjct: 390 MVEREDPEVWD----------VLE---EVIKEHP-----VLLNRAPTLHRLGIQAFEPVL 431
Query: 460 --GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
G I++ P L V + +NADFDGD+M +HVP S E +AE LM+ I+SP
Sbjct: 432 IEGKAIQLHP-----L---VCTAFNADFDGDQMAVHVPLSLEAQAEARVLMLSSNNILSP 483
Query: 518 QSNRPVMGIV--QDTLLGCRKITKRDTFIEKD-------VFMNI---LMWWEDFDGKVPQ 565
+ +P+ IV QD +LG +T+ E++ VF + L +E +G+V
Sbjct: 484 ANGKPI--IVPSQDMVLGLYYLTR-----EREGAKGEGMVFSSPEEALRAYE--NGEVDL 534
Query: 566 PTILKPRP-----LWT--GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
+K R + T G+ +FN I+P+ + N L
Sbjct: 535 HARIKVRITSKKLVETTVGRVIFNEILPEGLPF--------INVNKPLK----------- 575
Query: 619 ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD-T 677
KK + +I+ ++ G FL + L + ++ SIGI D
Sbjct: 576 --------KKEI----SKIINEVYRRYGLKETVIFLDKIKDLGFKYATRSGISIGIDDIV 623
Query: 678 IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE--NKVNQVLNTARD 735
I K + I I +A+ V + KQ + G ++ E NKV + + A D
Sbjct: 624 IPPEK--KEI---IEEAEKEVAEIEKQYRR-------G--LITDGERYNKVIDIWSKATD 669
Query: 736 EAGSSAQKSLSES----NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDR 790
E + K+LS+ N + M +G++GS I Q+ G G+ I
Sbjct: 670 EVAKAMMKNLSKDQESFNPIYMMADSGARGSASQIRQLAGMRGLMAKPSGEIIE------ 723
Query: 791 TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
P +++++ GLT E+F G R+GL DTA+KT+++GY+ RRLV
Sbjct: 724 -TP--------------IKSNFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLV 768
Query: 851 KAMEDIMVKYD--GTVR 865
+D++V+ D GT R
Sbjct: 769 DVAQDVIVREDDCGTDR 785
|
Length = 1156 |
| >gnl|CDD|184940 PRK14977, PRK14977, bifunctional DNA-directed RNA polymerase A'/A'' subunit; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (449), Expect = 2e-44
Identities = 108/456 (23%), Positives = 191/456 (41%), Gaps = 39/456 (8%)
Query: 974 WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
+ QK + ++E E E K T FN L
Sbjct: 892 IDPQKLDHGEAFNLE-----RIIEKQKIEDRGKGASKDEIE---ELAKEYTKTFNANLPK 943
Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1093
A + L + E + E + F ++ V PG+ IG ++AQSI EP TQMTL TF
Sbjct: 944 LLAD--AIHGAELKEDELEAICAEGKEGFEKAKVEPGQAIGIISAQSIAEPGTQMTLRTF 1001
Query: 1094 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLR 1153
H AG+ A +VT G+ R E+++ K TP++ ++L E+A + L+ +R
Sbjct: 1002 HAAGIKAMDVTHGLERFIELVDARAKPSTPTMDIYLDDECKEDIEKAIEIARNLKELKVR 1061
Query: 1154 SVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKK 1213
++ + + + PD+ P E+ + KK
Sbjct: 1062 ALIADSAIDN--------------ANEIKLIKPDKRALENGCIPMERFAEIEAALAKGKK 1107
Query: 1214 LSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI 1273
M + I + + + DK + + + ++ + + +++ +
Sbjct: 1108 FEMELEDDLIILD-------LVEAADRDKPLATLIAIRNKILDKPVKGVPDIERAWVELV 1160
Query: 1274 ESNMLTEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
E + E ++ G NL AV+ + +D T +N EI LGIEA R A+ +EL ++
Sbjct: 1161 EKDGRDEWIIQTSGSNLAAVLEMKCIDIANTITNDCFEIAGTLGIEAARNAIFNELASIL 1220
Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAI------TRHGINRNDTGPMMRCSFEETVDILL 1385
G V+ R++ ++ D M RG + AI RHG P+ + +FE T +
Sbjct: 1221 EDQGLEVDNRYIMLVADIMCSRGTIEAIGLQAAGVRHGFAGEKDSPLAKAAFEITTHTIA 1280
Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
AA+ E + ++G+ + +++GQ PIG+G L ++
Sbjct: 1281 HAALGGEIEKIKGILDALIMGQNIPIGSGKVDLLMD 1316
|
Length = 1321 |
| >gnl|CDD|237854 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A''; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (439), Expect = 8e-44
Identities = 114/349 (32%), Positives = 173/349 (49%), Gaps = 49/349 (14%)
Query: 1086 TQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQC 1145
T T+ TFHYAGV+ NVTLG+PR+ EI++ K+ TP ++V LK + +E+A+ V
Sbjct: 541 THNTMRTFHYAGVAEINVTLGLPRMIEIVDARKEPSTPIMTVHLKGEYATDREKAEEVAK 600
Query: 1146 ALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELN 1205
+E TL V + + D+ + I ++EL+
Sbjct: 601 KIESLTLGDVATSIAI---------------------------DLWTQSI-----KVELD 628
Query: 1206 REMMVDKKLSMAAVAEKINQEF----DDDLTCIF---NDDNADKLILRIRIMNDEAPKG- 1257
E + D+ L++ +V E I ++ D T ++ + L RI + + KG
Sbjct: 629 EETLADRGLTIESVEEAIEKKLGVKIDRKGTVLYLKPKTPSYKALRKRIPKIKNIVLKGI 688
Query: 1258 -ELNDESAEDDVFLKKIESNMLTEMAL--RGVNLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
+ V +KK E E L +G NL V E VD RTT+N++IEI EVL
Sbjct: 689 PGIER------VLVKKEEHENDEEYVLYTQGSNLREVFKIEGVDTSRTTTNNIIEIQEVL 742
Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
GIEA R A+++E+ + G V+ RHL ++ D MT G + I RHG+ + R
Sbjct: 743 GIEAARNAIINEMMNTLEQQGLEVDIRHLMLVADIMTADGEVKPIGRHGVAGEKGSVLAR 802
Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
+FEETV L DAA E D L+GV EN+++G+ +GTG L ++ E
Sbjct: 803 AAFEETVKHLYDAAEHGEVDKLKGVIENVIVGKPIKLGTGCVDLRIDRE 851
|
Length = 858 |
| >gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 9e-43
Identities = 118/387 (30%), Positives = 183/387 (47%), Gaps = 55/387 (14%)
Query: 168 KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDE 227
KGG GA+ + ++ + + E E+L + + E+ + KR+
Sbjct: 256 KGGMGAEAVRDLLDAIDLEKE----------AEELRAIIANGKGQKREKAV---KRLKVV 302
Query: 228 DCQLLGLNPKYARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLR 277
D L N P MIL V+P+ PP +RP + DL +I N L+
Sbjct: 303 DAFLKSGN----DPADMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLK 358
Query: 278 RQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIR 337
R GAP I++ ++LQ + + FDN G+P T RP+KS+ LK K+GR R
Sbjct: 359 RLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRP-VTGPGNRPLKSLADMLKGKQGRFR 417
Query: 338 GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
NL+GKRVD+S R+VI P + + Q G+P ++AL E P+ ++RL EL EY
Sbjct: 418 QNLLGKRVDYSGRSVIVVGPHLKLHQCGLPSAMAL-----ELFKPFVMKRLVEL-EYAA- 470
Query: 398 PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
+++ K++ D + V + VL NR P+LH++
Sbjct: 471 -------------------NIKAAKRAVDRGASYVWDVLEEVIQDHPVLLNRAPTLHRLG 511
Query: 458 IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
I ++ +L+ V + +NADFDGD+M +HVP S + +AE LM+ I SP
Sbjct: 512 IQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHVPLSTQAQAEARVLMLSSNNIKSP 571
Query: 518 QSNRPVMGIVQDTLLGCRKIT-KRDTF 543
RP+ QD ++G +T +RD F
Sbjct: 572 AHGRPLTVPTQDMIIGVYYLTTERDGF 598
|
Length = 1460 |
| >gnl|CDD|214336 CHL00018, rpoC1, RNA polymerase beta' subunit | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 6e-42
Identities = 97/316 (30%), Positives = 139/316 (43%), Gaps = 55/316 (17%)
Query: 239 ARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRR-QERNG-APA 286
P+WM+L +LP+ PP +RP S DL +I N L + P
Sbjct: 259 IEPEWMVLCLLPVLPPELRPIIQLDGGKLMSSDLNELYRRVIYRNNTLTDLLTTSRSTPG 318
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
++ +LLQ + DN + GQP +P KS ++ KEGR R NL+GKRVD
Sbjct: 319 ELVMCQKKLLQEAVDALLDNGIRGQP-MRDGHNKPYKSFSDVIEGKEGRFRENLLGKRVD 377
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
+S R+VI P++++ Q G+P IA+ L P+ I L H AK
Sbjct: 378 YSGRSVIVVGPSLSLHQCGLPREIAIELFQ-----PFVIRGLIRQ-----HLASNIRAAK 427
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM------- 459
IR+ + ++ + + G VL NR P+LH++ I
Sbjct: 428 SKIREKEPIVW----------------EILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV 471
Query: 460 -GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
G I + P V +NADFDGD+M +HVP S E +AE LM ++SP
Sbjct: 472 EGRAICLHP--------LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPA 523
Query: 519 SNRPVMGIVQDTLLGC 534
P+ QD LLG
Sbjct: 524 IGDPISVPSQDMLLGL 539
|
Length = 663 |
| >gnl|CDD|131440 TIGR02387, rpoC1_cyan, DNA-directed RNA polymerase, gamma subunit | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 2e-41
Identities = 133/515 (25%), Positives = 221/515 (42%), Gaps = 94/515 (18%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS------------IMRSVC 106
R + CE C + E G+++LA P+ H+ ++K + S + + V
Sbjct: 75 RGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSYVSILLDMPLRDVEQIVY 134
Query: 107 FNCSKIL--ADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL 164
FN +L + + K+KQ L E D+I + E
Sbjct: 135 FNAYVVLNPGNAKNLKYKQLLT----------------EDQWLEIEDQIYAEDSELENE- 177
Query: 165 KKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRI 224
G GA+ K + + + E A++ + E++ +K+ +R+ R+
Sbjct: 178 --EVVGIGAEALKQLLADLNL--EEVAEQLR----EEINGSKGQKRAKLIKRL-----RV 224
Query: 225 SDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNE 274
D +RP+WM+L V+P+ PP +RP + DL +I N
Sbjct: 225 IDN------FIATSSRPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNN 278
Query: 275 NLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEG 334
L R + AP I+ ++LQ + DN G+ + RP+KS+ ++ K+G
Sbjct: 279 RLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRT-VVGANNRPLKSLSDIIEGKQG 337
Query: 335 RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL--KELV 392
R R NL+GKRVD+S R+VI P + + Q G+P +A+ E P+ I RL + +V
Sbjct: 338 RFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAI-----ELFQPFVIHRLIRQGIV 392
Query: 393 EYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 452
K K I R D + + V + + G V+ NR P+
Sbjct: 393 N------NIKAAKKLIQRADDEI-----------------WSVLQEVITGHPVMLNRAPT 429
Query: 453 LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
LH++ I ++ +L+ V +NADFDGD+M +HVP S E + E LM+
Sbjct: 430 LHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQTEARLLMLASN 489
Query: 513 CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
++SP + P++ QD +LGC +T + EK
Sbjct: 490 NVLSPATGEPIVTPSQDMVLGCYYLTALNPGAEKG 524
|
The RNA polymerase gamma subunit, encoded by the rpoC1 gene, is found in cyanobacteria and corresponds to the N-terminal region the beta' subunit, encoded by rpoC, in other bacteria. The equivalent subunit in plastids and chloroplasts is designated beta', while the product of the rpoC2 gene is designated beta''. Length = 619 |
| >gnl|CDD|235055 PRK02625, rpoC1, DNA-directed RNA polymerase subunit gamma; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 2e-39
Identities = 99/312 (31%), Positives = 151/312 (48%), Gaps = 41/312 (13%)
Query: 239 ARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
+RP+WM+L V+P+ PP +RP + DL +I N L R + AP I
Sbjct: 240 SRPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEII 299
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
+ ++LQ + DN G+ + RP+KS+ ++ K+GR R NL+GKRVD+S
Sbjct: 300 VRNEKRMLQEAVDALIDNGRRGR-TVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYS 358
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL--KELVEYGPHPPPGKTGAK 406
R+VI P + + Q G+P +A+ E P+ I RL + +V K K
Sbjct: 359 GRSVIVVGPKLKMHQCGLPKEMAI-----ELFQPFVIHRLIRQGIVN------NIKAAKK 407
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
I R D + V + +G VL NR P+LH++ I ++
Sbjct: 408 LIQRADPEVWQ-----------------VLEEVIEGHPVLLNRAPTLHRLGIQAFEPILV 450
Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
+L+ V +NADFDGD+M +HVP S E +AE LM+ I+SP + P++
Sbjct: 451 EGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQAEARLLMLASNNILSPATGEPIVTP 510
Query: 527 VQDTLLGCRKIT 538
QD +LGC +T
Sbjct: 511 SQDMVLGCYYLT 522
|
Length = 627 |
| >gnl|CDD|132719 cd00630, RNAP_largest_subunit_C, Largest subunit of RNA polymerase (RNAP), C-terminal domain | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 5e-39
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 1295 EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRG 1354
E ++A E++E LGIEA R ++ E++ V++ G V+ RH+ ++ D MTY G
Sbjct: 43 EILNAASI-----HEMLEALGIEAARETIIREIQKVLASQGVSVDRRHIELIADVMTYSG 97
Query: 1355 HLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L +TR G + T P+MR SFE+T LLDAA E D L GV+ENI+LG+ AP+GTG
Sbjct: 98 GLRGVTRSGFRASKTSPLMRASFEKTTKHLLDAAAAGEKDELEGVSENIILGRPAPLGTG 157
|
RNA polymerase (RNAP) is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is the final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei, RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. Structure studies revealed that prokaryotic and eukaryotic RNAPs share a conserved crab-claw-shape structure. The largest and the second largest subunits each make up one clamp, one jaw, and part of the cleft. The largest RNAP subunit (Rpb1) interacts with the second-largest RNAP subunit (Rpb2) to form the DNA entry and RNA exit channels in addition to the catalytic center of RNA synthesis. The region covered by this domain makes up part of the foot and jaw structures. In archaea, some photosynthetic organisms, and some organelles, this domain exists as a separate subunit, while it forms the C-terminal region of the RNAP largest subunit in eukaryotes and bacteria. Length = 158 |
| >gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-26
Identities = 90/370 (24%), Positives = 149/370 (40%), Gaps = 58/370 (15%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG--VSAKNVTLGVPRLREIINVAKKIKT 1122
+ G AA++ G TQM + T HY G V+ T+G P L I++ AK T
Sbjct: 409 EMAVHVPASGEAAAEARGLMGTQMNILTPHYGGPIVAPIQDTVGGPYLLTIVD-AKLPST 467
Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
P ++LK +E+A+ + +E TT + + D + I+
Sbjct: 468 PVGEIYLKDEYADDREKAEAIAKKIELTTGKVIVSTISP--DLAELSIIVT--------- 516
Query: 1183 YEMPDEDIAPEKISPW---LLRIELNREM---MVDKKLSMAAVAEKI-NQEFDDDLTCIF 1235
D + P +L +N ++ ++DKK+ + + + L
Sbjct: 517 ---TDGRRIFNRGLPEDKDVLVKIVNGKLIKGVIDKKI--VTIYREYGPEVASKALV--- 568
Query: 1236 NDDNADKLILR---------IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
DKL I I D AED+ + ++ E G
Sbjct: 569 --KLLDKLKNLGIKGIGGFGIGIGRK--------DIEAEDE------KDEIVIEA--EGS 610
Query: 1287 NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN-YRHLAI 1345
L ++ +E+ D RT N+++EIIEVLGIEA+R A+++E+++ + G RH+ +
Sbjct: 611 VLKLILQYEEGDLTRTERNNIVEIIEVLGIEALRNAIIEEIKITLEEQGLDFVDIRHMGL 670
Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
M + I + G+ + R +FE T L+A ES +L G+TEN
Sbjct: 671 SGARMNISQIVQLIGQQGVMGEKISVLARAAFEVT-VKHLEAEGPGESSFLEGLTENEYF 729
Query: 1406 GQLAPIGTGD 1415
G TG
Sbjct: 730 GHPIGGRTGL 739
|
Length = 808 |
| >gnl|CDD|132719 cd00630, RNAP_largest_subunit_C, Largest subunit of RNA polymerase (RNAP), C-terminal domain | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 6e-21
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
GE +G +AAQSIGEP TQMTL TFH+AGV++ NVTLG+PRL+EI+N A
Sbjct: 1 GEAVGVLAAQSIGEPGTQMTLRTFHFAGVASMNVTLGLPRLKEILNAA 48
|
RNA polymerase (RNAP) is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is the final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei, RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. Structure studies revealed that prokaryotic and eukaryotic RNAPs share a conserved crab-claw-shape structure. The largest and the second largest subunits each make up one clamp, one jaw, and part of the cleft. The largest RNAP subunit (Rpb1) interacts with the second-largest RNAP subunit (Rpb2) to form the DNA entry and RNA exit channels in addition to the catalytic center of RNA synthesis. The region covered by this domain makes up part of the foot and jaw structures. In archaea, some photosynthetic organisms, and some organelles, this domain exists as a separate subunit, while it forms the C-terminal region of the RNAP largest subunit in eukaryotes and bacteria. Length = 158 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 6e-21
Identities = 84/349 (24%), Positives = 115/349 (32%), Gaps = 26/349 (7%)
Query: 1462 SPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 1521
S G L S + L+ VT G A P P PG + T
Sbjct: 39 SQGQLVSDSAELAAVTVVA-----GAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLS 93
Query: 1522 T------SPGYSPTSPGYSPTSP---TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
T + SPT PG S P T P+SP SP P SP P +
Sbjct: 94 TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS-PTSPAYSPTSPAYSPTSPSY 1631
+ + + S + S P SP + +P+SP P S + SP S
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI 213
Query: 1632 SPTSPSYSPTSP---------SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
S ++ S +P S S +S S S +P PT +
Sbjct: 214 SASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS 273
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP--TSSSYSPTSPS 1740
S + S+ S + SPSSP PA S + S SSS S +S S
Sbjct: 274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333
Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
S SP + P + SP PS SP++++
Sbjct: 334 ESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382
|
Length = 1352 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 8e-20
Identities = 85/345 (24%), Positives = 119/345 (34%), Gaps = 20/345 (5%)
Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSS 1502
P +G P G +P S T A SP + +P P
Sbjct: 60 AACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASP-AREGSPTPPGPSSPDPPP 118
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
P P+SP SP P SP P + + + S + + P S
Sbjct: 119 PTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS 178
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P + +P+SP P P S + SP S S ++ + +P +P S
Sbjct: 179 PEETARAPSSPPAEP------PPSTPPAAASPRPPRRSSPISASASSPAP-APGRSAADD 231
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
A + +S S S S + P T P+ + ++ S P S S S
Sbjct: 232 AGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSS-SS 290
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
SPS SP +PSSPR S +S S S + S +SSS S + S
Sbjct: 291 PRERSPSPSPS--------SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVS 342
Query: 1743 PSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
P SP P PSSP+ P +PS+P S
Sbjct: 343 PGPSPSRSPSP---SRPPPPADPSSPRKRPRPSRAPSSPAASAGR 384
|
Length = 1352 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 2e-18
Identities = 63/311 (20%), Positives = 93/311 (29%), Gaps = 15/311 (4%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+P G SP P P P SP + P P P P P
Sbjct: 2600 APVDDRGDPRGPAPPSPLPPDTHAPDP--PPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
S + + +SP P + PT + P P +P PA
Sbjct: 2658 PGRVSRPRRARRLGRAA-QASSPPQRPRRRAARPT---VGSLTSLADPPPPPPTP-EPAP 2712
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
A +P P + + + +P + P +P T+ +P
Sbjct: 2713 HALVSA-TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP 2771
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS-PTSPNYSP 1729
P P T P + S S + + P+ + + P + P P P
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831
Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS-SPQYSPSAGYSP-----SAPGY 1783
TS+ + P P P+ GG PS SP P+A P + P
Sbjct: 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891
Query: 1784 SPSSTSQYTPQ 1794
S S+ S P
Sbjct: 2892 SRSTESFALPP 2902
|
Length = 3151 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 91.4 bits (226), Expect = 2e-18
Identities = 76/332 (22%), Positives = 121/332 (36%), Gaps = 27/332 (8%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
T S + + P PT+P S PT PTS T P+ S
Sbjct: 428 TTKSVIFVYTLVHVEPHKTTAVPTTP--SLPPASTGPTVSTADPTSGT--PTGTTSSTLP 483
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
SPTS + S T + SPT T + SPT+ S T + SPT T+ A S
Sbjct: 484 EDTSPTSRTTSATPNATSPTPAV--TTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATS 541
Query: 1612 PTSPAYSPTSPAYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
P + S + A SP SP T+ ++PS ++ + SPTS
Sbjct: 542 PPTGTTSVPN-ATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGI 600
Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
S +S + + T+P + P+ + +PS+ + LSP TS
Sbjct: 601 PSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSG 660
Query: 1729 PTSSSYS------------PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
P +SS S P + SPS+P+ ++ + ++ + S S
Sbjct: 661 PGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLM 720
Query: 1777 SPSAP-----GYSPSSTSQYTPQTNRDDSTTK 1803
+ ++P + + + T S +
Sbjct: 721 ASTSPHTNEGAFRTTPYNATTYLPPSTSSKLR 752
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 9e-18
Identities = 60/308 (19%), Positives = 90/308 (29%), Gaps = 9/308 (2%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
P SP + + P P P P P S SSP P
Sbjct: 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA-QASSPPQRPRR 2685
Query: 1552 PAYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
A PT S + P P +P ++ S + P P+ + + P +P+ P +
Sbjct: 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA--PPA 2743
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
P +P T+ +P P+ P T P+ + S S + P+
Sbjct: 2744 VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES-RESLPSPW 2802
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA-KYSPSLAYSPSSPRLSPASPYSPTSPN 1726
+ + + P SP P P SA +P P P L +P
Sbjct: 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDV 2862
Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
S P+ P + P + P P +P P P
Sbjct: 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ 2922
Query: 1787 STSQYTPQ 1794
PQ
Sbjct: 2923 PPPPPQPQ 2930
|
Length = 3151 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 1e-17
Identities = 85/341 (24%), Positives = 122/341 (35%), Gaps = 21/341 (6%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 1527
S +S + V G A P P + + S ++P +S ++ +
Sbjct: 39 SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPA 98
Query: 1528 PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
+ SPT P PSSP P P P SP SP P SP P +
Sbjct: 99 SPAREGSPTPPG--PSSP--DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPA 154
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
+ + + S + S P SP A +P+SP P P S + SP
Sbjct: 155 AGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP------PPSTPPAAASPRPPR 208
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
S S ++ S +P + G S + S S +S P++ P A
Sbjct: 209 RSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGW------GPENECPLPRPAP 262
Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPT--SPSYSPSSP--TYSPSSPYNAGGGNPDY 1763
R+ AS ++ S P SSS SP SPS SPSSP +PSSP + +
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSR 322
Query: 1764 SPSSPQYSP-SAGYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
SS S S +A PS + +P +
Sbjct: 323 ESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363
|
Length = 1352 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-17
Identities = 73/335 (21%), Positives = 109/335 (32%), Gaps = 20/335 (5%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRL--SPVTDAQFSPYVGGMAFSPTSSPGYSPSS 1502
P +P +P SP S LR SP SP G + + +S S
Sbjct: 116 PPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQ 171
Query: 1503 PGY-SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
S + P +P + SP S S SPA +P +
Sbjct: 172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASAS--SPAPAPGRSAA 229
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
S S +S S S +P PT + ++ S P S
Sbjct: 230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIW---EASGWNGPSSRPGPAS 286
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
+ S SPS SP S + + S +S S +S + S +S + S
Sbjct: 287 SS-SSPRERSPSPSPS-SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPG 344
Query: 1682 PT---SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
P+ SP+ S P +P S + P + +PSSP S PT + +
Sbjct: 345 PSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG---RPTRRRARAAVAGRARRR 401
Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
+ SP +AG + + P +PS
Sbjct: 402 DATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPS 436
|
Length = 1352 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 6e-17
Identities = 66/299 (22%), Positives = 93/299 (31%), Gaps = 32/299 (10%)
Query: 1507 PSSPGYSPTSPGYSPTSPGYS----PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
SSP P PT + P P +P ++ S P PA + +
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P +P +P + P +P T+ +P P+ P T PA + S
Sbjct: 2736 PAAP--APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSE 2793
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PAYSPTSPGYSPTSPSY 1680
+ + PS + + + P+ SP P PTS P P PG P S
Sbjct: 2794 S-RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
Query: 1681 --------------SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
SP P +P+ P P+++ S S L P P P P
Sbjct: 2853 GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP- 2911
Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSP 1785
P P P P P P P +P P+ PS P
Sbjct: 2912 --QAPPPPQPQPQPPPPPQPQPPPPPP-----PRPQ-PPLAPTTDPAGAGEPSGAVPQP 2962
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 8e-17
Identities = 66/304 (21%), Positives = 100/304 (32%), Gaps = 16/304 (5%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS--PSSPGYSPTSPAYSPT 1557
P P P++P S P +P + TS P +P S P +P P P
Sbjct: 2554 PLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPR-GPA 2612
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSP----TSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
PS P +P P SP+ + P P P P S A
Sbjct: 2613 PPSPLPPDTH-APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
A +SP P + PT S + P P +P ++ S + P PA +
Sbjct: 2672 RAA-QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
+ P +P+ P P T + + + +P+ P A P +
Sbjct: 2731 ASPALPAAPA-PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
+ S + PS + + A P SP+ P P++ P+AP P
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAA-ALPPAASPAGPLPPPTSA-QPTAPPPPPGPPP 2847
Query: 1790 QYTP 1793
P
Sbjct: 2848 PSLP 2851
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 1e-16
Identities = 65/304 (21%), Positives = 96/304 (31%), Gaps = 15/304 (4%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
P P P++P S P +P + TS P +P P G
Sbjct: 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPP-QSARPRAPVDDRGDPRGP 2611
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
SP P +P P SPS + P P P P P S A
Sbjct: 2612 APPSPLPPD--THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
A +SP P + PT + P P +P P+ A +P P
Sbjct: 2670 LGRAA-QASSPPQRPRRRAARPT---VGSLTSLADPPPPPPTP-EPAPHALVSA-TPLPP 2723
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
G P + + + +P P+ + +P P+ P A P +P P
Sbjct: 2724 G--PAAARQASPALPAAPAPPA--VPAGPATPGGPARPARPPT-TAGPPAPAPPAAPAAG 2778
Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQY 1791
T P+ + S + S P +P + +P + SP+ P P+S
Sbjct: 2779 PPRRLTRPAVASLSES-RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837
Query: 1792 TPQT 1795
P
Sbjct: 2838 APPP 2841
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 3e-16
Identities = 75/391 (19%), Positives = 115/391 (29%), Gaps = 50/391 (12%)
Query: 1445 TPARSP---VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
TP +P VS TP G + P L +P A + + + P + +
Sbjct: 2707 TPEPAPHALVSATPLPPGPAAARQAS-PALPAAPAPPAVPAGPATPGGPARPARPP-TTA 2764
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
P +P+ P P T P + S + P+ + + + P+
Sbjct: 2765 GPP-APAPPAAPAAGPPRRLTRPAVASLSES-RESLPSPWDPADPPAAVLAPAAALPPAA 2822
Query: 1562 SPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSP-------SYSPTSPAYSPT 1613
SP P PTS PT+P P P S +P PA
Sbjct: 2823 SPAGPLPPPTSAQ--PTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
P PA S ++ S++ +P P P P P P P P
Sbjct: 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP--PPQPQPPPPPPPR 2938
Query: 1674 SPTSPSYSP-TSPTYSPTSPSYNPQSAKYSP-------SLAYSPSSPRLSPASPYSPTSP 1725
+ + + P+ P P P+ R +PAS P +
Sbjct: 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998
Query: 1726 NYSPTSSSYS--------PTSPSYSPSSPTYSP-------------SSPYNAGGGNPDYS 1764
+ SS++ P S + P S + D
Sbjct: 2999 HSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPL 3058
Query: 1765 PSSPQYSPSAGYSPSAP--GYSPSSTSQYTP 1793
P P + P+ P G S +SQ+ P
Sbjct: 3059 PPEPHDPFAHEPDPATPEAGARESPSSQFGP 3089
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 9e-16
Identities = 66/313 (21%), Positives = 100/313 (31%), Gaps = 13/313 (4%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+P S +P P SP + P P P P P S
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
A +SP P + PT S + P P +P ++ S + P P+ +
Sbjct: 2672 RAA-QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
+ P +PA P + P +P T+ +P P+ P T PA
Sbjct: 2731 ASPALPAAPA--PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSP-SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
+ S + P P + +P + P +A + L S+ +P P P P
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP-PP 2847
Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA---GYSPSAPG 1782
P S +P P+ SP++ A P + P S S P P
Sbjct: 2848 PSLPLGGSVAPGGD-VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906
Query: 1783 YSPSSTSQYTPQT 1795
P + PQ
Sbjct: 2907 RPPQPQAPPPPQP 2919
|
Length = 3151 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-15
Identities = 59/322 (18%), Positives = 94/322 (29%), Gaps = 16/322 (4%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP-AYSPTS 1558
P++PG + S G + + + P P P +P +
Sbjct: 25 PATPGDAADDLLSG--SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPAN 82
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
S S + S S +P+ S +P P S P P+ P SP SP
Sbjct: 83 ESRSTPTWSLSTLAPASPAREGSPTP------PGPSSPDPPPPTPPPASPPPSPAPDLSE 136
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
P SP P SP + SP+ + + S + + + P
Sbjct: 137 MLRPVGSPGPPP--AASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
+P + +P SA S S + S +S + S
Sbjct: 195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENE 254
Query: 1739 PSYSPSSPTYSPSSPYNAGGGN---PDYSPSSPQYSPSAGYSPSAPGY--SPSSTSQYTP 1793
+P P+ + A G N P+S SP +P S + S
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314
Query: 1794 QTNRDDSTTKDDKNTKGDKSSR 1815
++ S +T S
Sbjct: 315 SSSSSSSRESSSSSTSSSSESS 336
|
Length = 1352 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 6e-15
Identities = 73/360 (20%), Positives = 108/360 (30%), Gaps = 57/360 (15%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPT----SPGYSPTSPTYSPSSPGY---- 1547
P Y + P + G +P G P P P +P P P P P
Sbjct: 2478 PVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWI 2537
Query: 1548 ---------------SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1590
P PA P +P S P +P + TS + P +P S
Sbjct: 2538 RGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSAR 2597
Query: 1591 ---PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
P P P+ P+ +P P SP+ + P P P P P
Sbjct: 2598 PRAPVDDRGDPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDP 2656
Query: 1648 TSPSYS-------------PTSPSYSPTSPAYSPT-----------SPGYSPTSPSYSPT 1683
S +SP P A PT P +P ++
Sbjct: 2657 APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV 2716
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS-YSPTSPSYS 1742
S T P P+ Q++ P+ P+ P PA+P P P PT++ +P P+
Sbjct: 2717 SATPLPPGPAAARQASPALPAAPAPPAVPA-GPATPGGPARPARPPTTAGPPAPAPPAAP 2775
Query: 1743 PSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
+ P A + S P A + + + +P T+
Sbjct: 2776 AAGP--PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833
|
Length = 3151 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-14
Identities = 55/293 (18%), Positives = 84/293 (28%), Gaps = 23/293 (7%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P +P Y + P + +P G P P P +P P P
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534
Query: 1581 SY----------------SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
++ P P+ P +P S P +P + TS A P +P
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPP- 2593
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
P +P P P+ P+ +P P SP+ + P P P
Sbjct: 2594 QSARPR-APVDDRGDPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPER 2651
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS 1744
P P + A SSP P + P +S P P +P
Sbjct: 2652 PRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR--PTVGSLTSLADPPPPPPTPE 2709
Query: 1745 S--PTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
++P G + + +P+ P+ P P T
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT 2762
|
Length = 3151 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 2e-13
Identities = 59/261 (22%), Positives = 71/261 (27%), Gaps = 20/261 (7%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P + P +P SP S +P S Y PS P S P
Sbjct: 65 PLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQY----PSQLPPQQVQSVPQQPTPQQEP 120
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
Y P S P + P P P P P Y P P + S
Sbjct: 121 YYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSP--PQQPQYQQNPP---PQAQSAPQ 175
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS---YNPQSAK---YSPSLAYS 1708
S Y SP + P P S + P YS PS Y P Y
Sbjct: 176 VSGLYPEESPYQPQSYPPNEPLPSSMAMQPP-YSGAPPSQQFYGPPQPSPYMYGGPGGRP 234
Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
S P S Y + P S S +Y+P + S +
Sbjct: 235 NSGFPSGQQPPPSQGQEGYGYSG---PPPSKGNHGSVASYAPQGSSQSYSTA-YPSLPAA 290
Query: 1769 QYSPSAGYSPSAPGYSPSSTS 1789
P A SAP S S
Sbjct: 291 TVLPQALPMSSAPMSGGGSGS 311
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-13
Identities = 55/261 (21%), Positives = 70/261 (26%), Gaps = 13/261 (4%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
S + + S P + + +P + P+ +P SP S +P S
Sbjct: 36 SSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPS 95
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
Y P+ P S P Y P S P + P P P
Sbjct: 96 HQY----PSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQ 151
Query: 1661 PT-SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
SP P P +P P Y PQS Y P+ S P S
Sbjct: 152 QYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQS--YPPNEPLPSSMAMQPPYSG 209
Query: 1720 YSPTSPNYSPTSSSYS----PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
P+ Y P S P S P G YS P
Sbjct: 210 APPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYG--YSGPPPSKGNHGS 267
Query: 1776 YSPSAPGYSPSSTSQYTPQTN 1796
+ AP S S S P
Sbjct: 268 VASYAPQGSSQSYSTAYPSLP 288
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 4e-13
Identities = 72/323 (22%), Positives = 102/323 (31%), Gaps = 33/323 (10%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
P PG + + PT P P SP + P PS
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPT-PSAQAVPPQGSPIAA--QPAPQPQQPSPLSLISAPS 231
Query: 1553 AYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----YSPTS 1607
+ PS + P P + P S P S + P P P+S
Sbjct: 232 LHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSS 291
Query: 1608 PAYSPTSPAYSPTSPAYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-----P 1661
P A S P P+ + +S T PS S P P P +PS P
Sbjct: 292 NPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPRE-QPLPPAPSMPHIKPPP 350
Query: 1662 TSPAYSPTSPGYS-----------PTSPSYSPTSPTYSPTS--PSYNPQSAKYSPSLAYS 1708
T+P + + P PS P P P S P+++P SA + P L
Sbjct: 351 TTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSA-HPPPLQLM 409
Query: 1709 PSSPRLSPASPYSPT---SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
P S L P S + P +S++ + P + P+ +GG P
Sbjct: 410 PQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPF-AQHPFTSGGLPAIGPP 468
Query: 1766 SSPQYSPSAGYSPSAPGYSPSST 1788
S S A ++ G P +
Sbjct: 469 PSLPTSTPAAPPRASSGSQPPGS 491
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 6e-13
Identities = 65/259 (25%), Positives = 78/259 (30%), Gaps = 18/259 (6%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+ P +P SP +P S Y P P S P Y P
Sbjct: 70 NAALPPAPAPQSPQPDQQQQSQAPPSHQY----PSQLPPQQVQSVPQQPTPQQEPYYPPP 125
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
S P + P P P P P Y P P + S S Y
Sbjct: 126 SQPQPPPAQQPQAQQPQPPPQVPQQQQYQSP--PQQPQYQQNPP---PQAQSAPQVSGLY 180
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS---YSPTSPS-YSPTSPSYSPTSPAY 1666
SP + P P S + P YS PS Y P PS Y P P S
Sbjct: 181 PEESPYQPQSYPPNEPLPSSMAMQPP-YSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFP 239
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
S P S Y + P S + A S +YS + P L A+ P
Sbjct: 240 SGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVL----PQ 295
Query: 1727 YSPTSSSYSPTSPSYSPSS 1745
P SS+ S SP S
Sbjct: 296 ALPMSSAPMSGGGSGSPQS 314
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 7e-13
Identities = 60/262 (22%), Positives = 75/262 (28%), Gaps = 21/262 (8%)
Query: 1516 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1575
P +P SP +P S Y P P S P Y P S
Sbjct: 74 PPAPAPQSPQPDQQQQSQAPPSHQY----PSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQ 129
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
P + P P P SP P P +P P Y P
Sbjct: 130 PPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQ 189
Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
S + PS P YS PS P P+ Y + P+ PS
Sbjct: 190 SYPPNEPLPSSMAMQPPYSGAPPSQQFYGPP-QPSPYMYGGPGGRPNSGFPSGQQPPPSQ 248
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP----TYSP 1750
+ YS PS + Y+P S SYS PS ++
Sbjct: 249 GQEGYGYSGP---PPSKGNHGSVASYAPQGS-----SQSYSTAYPSLPAATVLPQALPMS 300
Query: 1751 SSPYNAGGGNPDYSPSSPQYSP 1772
S+P + GG SP S P
Sbjct: 301 SAPMSGGGSG---SPQSGNRVP 319
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|132721 cd02655, RNAP_beta'_C, Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 8e-13
Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
LV GE +G +AAQSIGEP TQ+T+ TFH GV A ++T G+PR+ E+
Sbjct: 1 KLVELGEAVGIIAAQSIGEPGTQLTMRTFHTGGV-ATDITQGLPRVEEL 48
|
Bacterial RNA polymerase (RNAP) is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. This family also includes the eukaryotic plastid-encoded RNAP beta" subunit. Structure studies suggest that RNAP complexes from different organisms share a crab-claw-shape structure with two pincers defining a central cleft. Beta' and beta, the largest and the second largest subunits of bacterial RNAP, each makes up one pincer and part of the base of the cleft. The C-terminal domain includes a G loop that forms part of the floor of the downstream DNA-binding cavity. The position of the G loop may determine the switch of the bridge helix between flipped-out and normal alpha-helical conformations. Length = 204 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (173), Expect = 1e-12
Identities = 25/129 (19%), Positives = 64/129 (49%)
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
++P + +PA + P+ + +P+ + +P+ + P+ + P+ + P+ + P+
Sbjct: 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 279
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
+ PA + PA + +PA + +P+ + +P+ + P+ + P+ + T P+ +
Sbjct: 280 KAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAA 339
Query: 1663 SPAYSPTSP 1671
PA + +P
Sbjct: 340 PPAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (172), Expect = 2e-12
Identities = 25/128 (19%), Positives = 63/128 (49%)
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
+PA + +P+ + P+ + +P+ + +P+ + P+ + P+ + P+ + PA
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
+ PA + PA + +P+ + +P+ + +P+ + P+ + P+ + T PA +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1671 PGYSPTSP 1678
P + +P
Sbjct: 341 PAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (170), Expect = 3e-12
Identities = 26/141 (18%), Positives = 64/141 (45%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
A +P+ ++P + ++P + P + +P + +P + P + + P +
Sbjct: 208 AAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA 267
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
PA + P+ + P+ + P+ + +P+ + +P+ + +P+ + P+ + P
Sbjct: 268 AAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPP 327
Query: 1609 AYSPTSPAYSPTSPAYSPTSP 1629
A + T PA + PA + +P
Sbjct: 328 AKAATPPAKAAAPPAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (169), Expect = 4e-12
Identities = 24/128 (18%), Positives = 63/128 (49%)
Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
+P + ++P + PA + +P+ + +P+ + P+ + P+ + P+ + P+
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
+ P+ + PA + +PA + +PA + +P+ + P+ + P+ + T P+ +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1657 PSYSPTSP 1664
P+ + +P
Sbjct: 341 PAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (169), Expect = 4e-12
Identities = 24/128 (18%), Positives = 63/128 (49%)
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
+P+ + +P+ + P+ + +P+ + +P+ + P+ + P+ + PA + PA
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
+ PA + P+ + +P+ + +P+ + +P+ + P+ + PA + T P +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1678 PSYSPTSP 1685
P+ + +P
Sbjct: 341 PAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (169), Expect = 4e-12
Identities = 25/133 (18%), Positives = 63/133 (47%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
S +P+ + +P+ + P+ + +P+ + +P+ + P+ + PA + PA +
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
PA + P+ + P+ + +P+ + +P+ + +P+ + PA + P + T P+
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335
Query: 1680 YSPTSPTYSPTSP 1692
+ P + +P
Sbjct: 336 KAAAPPAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (168), Expect = 5e-12
Identities = 24/128 (18%), Positives = 62/128 (48%)
Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
+P + +P + + P + +PA + +P+ + P+ + P+ + P+ + P+
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
+ P+ + P+ + +PA + +PA + +PA + P+ + P+ + T P+ +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1650 PSYSPTSP 1657
P+ + +P
Sbjct: 341 PAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (167), Expect = 7e-12
Identities = 24/128 (18%), Positives = 61/128 (47%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
+P + +P + P + ++P + +PA + P+ + P+ + P+ + P+
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
+ P+ + P+ + +P+ + +PA + +PA + PA + P+ + T P+ +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1643 PSYSPTSP 1650
P+ + +P
Sbjct: 341 PAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 70.2 bits (171), Expect = 8e-12
Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 21/277 (7%)
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
++P + + T+ + + T+ + S + T P + PT+PS
Sbjct: 395 ANPVADAKTLIITRTATNATTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPS 454
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP--TSPSYSPTSPSYSPTSPSY-------- 1652
P S PT PTS + T+ S P TSP+ TS + + TSP+
Sbjct: 455 LPPASTG--PTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNAT 512
Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP----SLAYS 1708
SPT+ S T A SPT T+ + SP + T S + + +PQ + SP +
Sbjct: 513 SPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNAT-SPQVTEESPVNNTNTPVV 571
Query: 1709 PSSPRLSPASPY-SPTSPNYSPTSSSYSP---TSPSYSPSSPTYSPSSPYNAGGGNPDYS 1764
S+P + ++ SPTS + + +S + +P G + +
Sbjct: 572 TSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENIT 631
Query: 1765 PSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
+P + S +PG P +TSQ + N S
Sbjct: 632 EETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSR 668
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (166), Expect = 9e-12
Identities = 24/129 (18%), Positives = 60/129 (46%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
++P + +P + P + +P + +P + + P + PA + P+ + P+
Sbjct: 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 279
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
+ P+ + P+ + +P+ + +P+ + +P+ + PA + PA + T PA +
Sbjct: 280 KAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAA 339
Query: 1628 SPSYSPTSP 1636
P+ + +P
Sbjct: 340 PPAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (166), Expect = 9e-12
Identities = 24/128 (18%), Positives = 60/128 (46%)
Query: 1516 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1575
+P + +P + P + +P + ++P + PA + P+ + P+ + P+
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+ P+ + P+ + +P+ + +P+ + +PA + PA + PA + T P+ +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1636 PSYSPTSP 1643
P+ + +P
Sbjct: 341 PAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (165), Expect = 1e-11
Identities = 24/136 (17%), Positives = 62/136 (45%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
G + ++P + ++P + + P + +P + +P + P + P + + P
Sbjct: 213 GKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPA 272
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
+ PA + P+ + P+ + +P+ + +P+ + +P+ + P+ + P+ + T
Sbjct: 273 KAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAT 332
Query: 1607 SPAYSPTSPAYSPTSP 1622
PA + PA + +P
Sbjct: 333 PPAKAAAPPAKAAAAP 348
|
Length = 357 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-11
Identities = 70/322 (21%), Positives = 98/322 (30%), Gaps = 17/322 (5%)
Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
+ P + + P L SP+ L P T +Q SP + S + P P
Sbjct: 217 QPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMP 276
Query: 1506 SPSSPG--------YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS-- 1555
G +P P S P + PS P P
Sbjct: 277 HALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQP 336
Query: 1556 -PTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTS--PAY 1610
P +PS P + P S + P PS P PS P P+ P S P +
Sbjct: 337 LPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTH 396
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P S P P P S S P + ++ + P +
Sbjct: 397 HPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPF-AQH 455
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS-PASPYSPTSPNYSP 1729
P S P+ P + T + S+ P + PSS + P P P P
Sbjct: 456 PFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEP 515
Query: 1730 TSSSYSPTSPSYSPSSPTYSPS 1751
+ P SP P SP+ P+
Sbjct: 516 LDEAEEPESPPPPPRSPSPEPT 537
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (159), Expect = 7e-11
Identities = 24/127 (18%), Positives = 60/127 (47%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
S +P+ + +P+ + P+ + +P+ + +P+ + PA + PA + PA +
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
P+ + P+ + P+ + +P+ + +P+ + +PA + P + P+ + T P
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335
Query: 1687 YSPTSPS 1693
+ P+
Sbjct: 336 KAAAPPA 342
|
Length = 357 |
| >gnl|CDD|233840 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit, predominant form | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-10
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA--KNVTLGVPRLREIINV 1116
LV GE +G +AAQSIGEP TQ+T+ TFH GV+ ++T G+PR++E+
Sbjct: 866 KLVEIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAGASGDITQGLPRVKELFEA 919
|
Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain [Transcription, DNA-dependent RNA polymerase]. Length = 1140 |
| >gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 3e-10
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Query: 725 KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRI 783
+V + A +E G + E N + M +G++G+ I Q+ G +++G+ I
Sbjct: 762 QVVDIWTEATEEVGEAMLAGFDEDNPIYMMADSGARGNIKQIRQLAGMRGLMADMKGEII 821
Query: 784 PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
D P F E GL+ E+F G R+GL+DTA++T+++G
Sbjct: 822 -----DL-----------PIKANFRE-----GLSVLEYFISTHGARKGLVDTALRTADSG 860
Query: 844 YIQRRLVKAMEDIMVK 859
Y+ RRLV +D++V+
Sbjct: 861 YLTRRLVDVAQDVIVR 876
|
Length = 1460 |
| >gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-10
Identities = 71/343 (20%), Positives = 110/343 (32%), Gaps = 40/343 (11%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSP--TSPGYSPTSPTYSPS 1543
+ S S +S SP S +S + + SP S +S ++ P +
Sbjct: 7 NNLLPSIKSQLHHSKKSPPSSTTSQELMNGNSTPNSFSPIPSKASSSATFTLNLPINNSV 66
Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
+ + +S + S S+S S + S S PS S +PS S + S S S +
Sbjct: 67 NHKITSSSSSRRKPSGSWSVAISSSTSGSQSLLMELPS-SSFNPSTSSRNKSNSALSSTQ 125
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS-----PSYSPTSPSYSPTSPSY-SPTSP 1657
+ + S + + S S P +P + S +S +P S S T+
Sbjct: 126 QGNANSSVTLSSSTAS-SMFNSNKLPLPNPNHSNSATTNQSGSSFINTPASSSSQPLTNL 184
Query: 1658 SYSPTSPA----YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
S Y S S T + TSPS+NP SP+ +S S
Sbjct: 185 VVSSIKRFPYLTSLSPFFNYLIDPSSDSAT--ASADTSPSFNP-PPNLSPNNLFSTSDLS 241
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTS--------------PSYSPSSPTYSPSSPYNAGGG 1759
P + + + +SS TS S S S SS
Sbjct: 242 PLPDTQSVENNIILNSSSSINELTSIYGSVPSIRNLRGLNSALVSFLNVSSSS------L 295
Query: 1760 NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
SP+ SPS ++ + TT
Sbjct: 296 AFSALNGKEV-SPTG--SPSTRSFARVLPKSSPNNLLTEILTT 335
|
Length = 777 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 6e-10
Identities = 61/250 (24%), Positives = 84/250 (33%), Gaps = 23/250 (9%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSP 1591
P + SP P P P SP +Y P P
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPR--PLSPYTAYEDLKP---P 383
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
TSP PT PS SP S P P P SP S S P +
Sbjct: 384 TSPI--PTPPSSSPASS--KSVDAVAKPAEPDVVP-----SPGSASNVPEVEPAQVEAKK 434
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
P SP Y+ PTSP SPT+P+ S + + + P+ + + + A +P
Sbjct: 435 TRPLSP-YARYEDLKPPTSP--SPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPP 491
Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS 1771
+ P SPY+ PTS S + +PSS +A P + + Q+
Sbjct: 492 ANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSA----PPTALADEQHH 547
Query: 1772 PSAGYSPSAP 1781
P +P
Sbjct: 548 AQPKPRPLSP 557
|
Length = 576 |
| >gnl|CDD|234794 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (156), Expect = 1e-09
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
LV GE +G +AAQSIGEP TQ+T+ TFH GV ++T G+PR+ E+
Sbjct: 875 LVNIGEAVGVIAAQSIGEPGTQLTMRTFHTGGV---DITGGLPRVAELF 920
|
Length = 1156 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 63.2 bits (153), Expect = 1e-09
Identities = 69/321 (21%), Positives = 96/321 (29%), Gaps = 12/321 (3%)
Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG-YSPS 1501
G A S TP + P + + P P + P
Sbjct: 186 GAALAPSAPPPTPSAQ-AVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPL 244
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT----YSPSSPGYSPTSPAYSPT 1557
P + P P S + P P PSS P A S
Sbjct: 245 QPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQV 304
Query: 1558 SPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
P P+ + +S T PS S P P P +PS P + P S
Sbjct: 305 PPLPLPSQAQPHSHTPPSQSALQPQQPPRE-QPLPPAPSMPHIKPPPTTPIPQLPNQSHK 363
Query: 1617 YSP--TSPAYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
+ P P+ P PS P P+ P S P++ P S P P P
Sbjct: 364 HPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPP 423
Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
S S P + T+ + P + ++ S P + P ++P P +S
Sbjct: 424 VLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRAS 483
Query: 1733 SYSPTSPSYSPSSPTYSPSSP 1753
S S S PSS + P
Sbjct: 484 SGSQPPGSALPSSGGCAGPGP 504
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-09
Identities = 57/207 (27%), Positives = 78/207 (37%), Gaps = 18/207 (8%)
Query: 1528 PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
PTSP PT P+ SP+S P P P SP S S P +
Sbjct: 383 PTSP--IPTPPSSSPASS--KSVDAVAKPAEPDVVP-----SPGSASNVPEVEPAQVEAK 433
Query: 1588 SYSPTSP--SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1645
P SP Y P PTSP SPT+P S + + + P+ P + + + +
Sbjct: 434 KTRPLSPYARYEDLKP---PTSP--SPTAPTGVSPSVSSTSSVPA-VPDTAPATAATDAA 487
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL 1705
+P + P SP Y+ PTSP + +P+S + P +A
Sbjct: 488 APPPANMRPLSP-YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQH 546
Query: 1706 AYSPSSPRLSPASPYSPTSPNYSPTSS 1732
P LSP + Y P SPT S
Sbjct: 547 HAQPKPRPLSPYTMYEDLKPPTSPTPS 573
|
Length = 576 |
| >gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) | Back alignment and domain information |
|---|
Score = 62.9 bits (152), Expect = 2e-09
Identities = 80/342 (23%), Positives = 119/342 (34%), Gaps = 40/342 (11%)
Query: 1434 PSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM---AF 1490
PS P SGTP + SP R + T SP A
Sbjct: 453 PSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNAT 512
Query: 1491 SPTS---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-------- 1539
SPT+ S + +SP + TSP TS + TSP + SP
Sbjct: 513 SPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVP-NATSPQVTEESPVNNTNTPVV 571
Query: 1540 YSPSS------------PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
S S G SPTS S S+S + + T+P + P+
Sbjct: 572 TSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENIT 631
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
+P+ PS + S SP TS P + + S P + P+ +
Sbjct: 632 EETPSVPSTTHVSTL-SPGPGP-GTTSQVSGPGNSSTSR-----YPGEVHVTEGMPNPNA 684
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
TSPS +PS T+ ++ G + ++ + S + TSP N + + +P A
Sbjct: 685 TSPS----APSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEGAFRTTPYNAT 740
Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
+ P S +S P SP ++ T P P +S
Sbjct: 741 TYLPP--STSSKLRPRWTFTSPPVTTKQATVPVPPTQHPDHS 780
|
This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 2e-09
Identities = 65/299 (21%), Positives = 93/299 (31%), Gaps = 16/299 (5%)
Query: 1446 PARSPVSGTPYHDGMMSP-------GYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
PA S H G P G +F + +P + P+ + +
Sbjct: 257 PAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPH 316
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
S + P S P P P P +P+ P P T P P S P +
Sbjct: 317 SHTPPSQSALQPQQPPRE---QPLPP--APSMPHIKPPPTTPIPQLPNQSHKHPPHL-QG 370
Query: 1559 PSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
PS P PS P P+ P S P++ P S P P P S +
Sbjct: 371 PSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQS 430
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
P + + + P + P S P+ P + T A S G P
Sbjct: 431 LPPKASTHPHSGLHSGPPQSPF-AQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPP 489
Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
+ + P P Q + A P SP P SP + +P+ +S S
Sbjct: 490 GSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPSHASQS 548
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 2e-09
Identities = 60/313 (19%), Positives = 96/313 (30%), Gaps = 43/313 (13%)
Query: 1467 FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
+ P L +P+T+ V A + T++ ++ + + P S P PT
Sbjct: 307 YDPLLNGAPITEP-----VAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAW- 360
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
PG P +P+ GY S P P P P Y+P +
Sbjct: 361 -QPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQ-PAQQ 418
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
P Y+P P P Y+P + + +++P +Y
Sbjct: 419 PYYAPA-PEQPAQQPYYAPAPEQPVAGNAWQAE------EQQSTFAP-QSTYQTEQTYQQ 470
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT-----------------SPTYSP 1689
P + P P P P T P+ P + Y P
Sbjct: 471 PAAQEPLYQQPQPVEQQPVVEP-EPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQP 529
Query: 1690 T-SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
P P+ K S +PS + P + SP S + T + + ++P +
Sbjct: 530 IPEPVKEPEPIKSSLK---APSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVF 586
Query: 1749 SPSSPYNAGGGNP 1761
S A G P
Sbjct: 587 SL-----ANSGGP 594
|
Length = 1355 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-09
Identities = 37/210 (17%), Positives = 54/210 (25%), Gaps = 20/210 (9%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYS-PTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
PS +P P + S P P Y P P P
Sbjct: 87 TVDPSAGEPAPP-PPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPA 145
Query: 1621 SPAYSPTSP--SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
PAY ++ + Y + P +P SP S + Y
Sbjct: 146 YPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQ-----ERDREPYDAG 200
Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS---PRLSPASPYSPTSPNYSPTSSS 1733
P Y Y P ++ + P + R P P +P
Sbjct: 201 RPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAP-----VVP 255
Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAGGGNPDY 1763
P++P + P +P NP Y
Sbjct: 256 IRPSAPGPLAAQPAPAPGPGEPTARLNPKY 285
|
Length = 617 |
| >gnl|CDD|132721 cd02655, RNAP_beta'_C, Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 43/157 (27%)
Query: 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDEL-------------------------RVVIS 1332
+AR+ + L+ I + LG EAV++ L++E+ +V I
Sbjct: 50 EARKINPHDLLRI-KFLGPEAVQKYLVEEIQKVYRSQGVNINDKHIEIIVRQMTSKVKII 108
Query: 1333 FDGS---------------YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
G N R L + Y L+ IT+ +N + SF
Sbjct: 109 DPGDSGFLPGELVDLNEFEEENKRLLLLGKKPAKYEPVLLGITKASLNTE--SFISAASF 166
Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
+ET +L +AA+ + D+LRG+ EN++LG+L P GTG
Sbjct: 167 QETTKVLTEAAIEGKIDWLRGLKENVILGRLIPAGTG 203
|
Bacterial RNA polymerase (RNAP) is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. This family also includes the eukaryotic plastid-encoded RNAP beta" subunit. Structure studies suggest that RNAP complexes from different organisms share a crab-claw-shape structure with two pincers defining a central cleft. Beta' and beta, the largest and the second largest subunits of bacterial RNAP, each makes up one pincer and part of the base of the cleft. The C-terminal domain includes a G loop that forms part of the floor of the downstream DNA-binding cavity. The position of the G loop may determine the switch of the bridge helix between flipped-out and normal alpha-helical conformations. Length = 204 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 3e-09
Identities = 54/213 (25%), Positives = 79/213 (37%), Gaps = 15/213 (7%)
Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
SPY P +SP +P S SS + P ++ P
Sbjct: 372 SPYTAYEDLKPPTSPIPTPPSSS-PASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQV 430
Query: 1542 PSSPGYSPTSP--AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
+ P SP Y P PTSP SPT+P+ S S + + P+ P + +
Sbjct: 431 EAKKT-RPLSPYARYEDLKP---PTSP--SPTAPTGVSPSVSSTSSVPA-VPDTAPATAA 483
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
+ + +P P SP Y+ PTSPS + +P+S + + +P +
Sbjct: 484 TDAAAPPPANMRPLSP-YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542
Query: 1660 SP---TSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
P P SP Y+ PTSPT SP
Sbjct: 543 DEQHHAQPKPRPLSP-YTMYEDLKPPTSPTPSP 574
|
Length = 576 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 4e-09
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
TS + P+ +P + PA +PTS A A +PT + P+ +P +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
P+ +P + A + TS + +P+ + TS P+ + Q + P
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP--PP 150
Query: 1705 LAYSPS 1710
AY+ S
Sbjct: 151 FAYTRS 156
|
Length = 566 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 6e-09
Identities = 47/230 (20%), Positives = 64/230 (27%), Gaps = 13/230 (5%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTS---PGYSPTSPTYSPSSPGYS--PT 1550
P P S P Y P S P + P P P Y P
Sbjct: 99 PSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQ 158
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
P Y P + ++P S P SP P P + + P S +
Sbjct: 159 QPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYG 218
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P Y P P S S P S Y + P P S + +Y+P
Sbjct: 219 PPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGP---PPSKGNHGSVASYAPQG 275
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
S ++ S + T P + + P SP+ P
Sbjct: 276 SSQSYSTAYPSLPAATVLPQALPMSSA-----PMSGGGSGSPQSGNRVPI 320
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 7e-09
Identities = 65/284 (22%), Positives = 91/284 (32%), Gaps = 26/284 (9%)
Query: 1429 IELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM 1488
+ LQ PS FG+ ++ P P P + S
Sbjct: 284 VFLQHPSSNPPQPFGLAQSQVPPLPLPSQA---------------QPHSHTPPSQ----S 324
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
A P P P P +PS P P P P S P + P+ P P
Sbjct: 325 ALQPQQPPREQPLPP--APSMPHIKPPPTTPIPQLPNQSHKHPPHL-QGPSPFPQMPSNL 381
Query: 1549 PTSPAYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
P PA P S P++ P S P P P S S P + ++ +
Sbjct: 382 PPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHS 441
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
P + P S P+ P PS ++P+ P + S S S P+S
Sbjct: 442 GLHSGPPQSPF-AQHPFTSGGLPAIGPP-PSLPTSTPAAPPRASSGSQPPGSALPSSGGC 499
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
+ P P P P SP P+S P++ +PS
Sbjct: 500 AGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPS 543
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
G +G +AAQSIGEP TQ+T+ TFH GV+ ++T G+PR+ E+ K
Sbjct: 974 GTAVGIIAAQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVAELFEARK 1022
|
Length = 1460 |
| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 2e-08
Identities = 69/320 (21%), Positives = 90/320 (28%), Gaps = 55/320 (17%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP--TSPGYSPTSPG----YSPTS-PT 1539
+ P +PG G S G P T G PG + P+ PT
Sbjct: 515 EASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPT 574
Query: 1540 YS--PSSP--GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSY--SP 1591
S P P P P P P P S PT P SP P P SP SP
Sbjct: 575 LSKKPEFPKDPKHPKDPE-EPKKPK-RPRSAQ-RPTRPK-SPKLPELLDIPKSPKRPESP 630
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY------------- 1638
SP P P P+SP P P SP P SP P P +
Sbjct: 631 KSPK-RPPPPQ-RPSSPE-RPEGPK-IIKSPK-PPKSPK-PPFDPKFKEKFYDDYLDAAA 684
Query: 1639 ----SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS-PGYSPTSPSYSPTSPTYSPTSPS 1693
+ T+ + S + +P +P +P P P P P P +
Sbjct: 685 KSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEE-FPFEPIGDPDAEQ 743
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
+ P +P + + + P P SP
Sbjct: 744 PDDIEFFTPPE----EERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSP 799
Query: 1754 YNAGGGNPDYSPSSPQYSPS 1773
++ P PS
Sbjct: 800 -------SEHEDKPPGDHPS 812
|
Length = 943 |
| >gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045) | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 67/291 (23%), Positives = 91/291 (31%), Gaps = 46/291 (15%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTS-PGYSPT------SPGYSPTSPTYSPSSPGYSPTS 1551
S ++P + S G + P+S PG S + T + P
Sbjct: 48 SDAAPSGTDSLSGRPASRLNREPSSRPGSSHSEATIVRQAKEGERPATPPEARPDEGFVR 107
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSY------SPTSPSY 1603
P+ P+ P S S S S PS S T +SPT ++ P SP +
Sbjct: 108 PSL-PSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTKATWLESALNKPESPKH 166
Query: 1604 SPTSPAYS--------------------PTSPAYSPTSPAYSPTSPSYSPTSPSYS---- 1639
P P S P SPS S
Sbjct: 167 KPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPD 226
Query: 1640 -PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPGYSPTSPSYSPTSPTYS--PTSPSYN 1695
P+S T P S T + +P P SP +P T SP +
Sbjct: 227 LPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEAS 286
Query: 1696 PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
P+ ++ + + SPS LSP+ P SP S P SP P SP
Sbjct: 287 PKESEEASARKRSPSL--LSPSPKAESPKPLASPGKSPRDPLSPRPKPQSP 335
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414 |
| >gnl|CDD|237854 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A''; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 3e-08
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 1042 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
K +T E E +I E+ S +L +LV P E +G VAAQSIGEP TQM+L
Sbjct: 29 KRDGVTEEMVEEIIDEVVSAYLNALVEPYEAVGIVAAQSIGEPGTQMSL 77
|
Length = 858 |
| >gnl|CDD|219094 pfam06583, Neogenin_C, Neogenin C-terminus | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 3e-08
Identities = 50/245 (20%), Positives = 70/245 (28%), Gaps = 26/245 (10%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
TP RS TP S P + + + Y G + SS
Sbjct: 33 TPIRSSQDITPVSSSAQS-----------EPQSGQRRNSYRGHESEDSMSSLAARRGMRP 81
Query: 1505 Y-------SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS---PTSPAY 1554
P P S P ++ +P Y P SP T
Sbjct: 82 KMMIPMDSQPPQPVVS-AHPIHTLDNPQYPGILP--SPRCGYLHHQFSLRPMPFSTLTVQ 138
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
S +P P P+ S + + +PS S + PT P S
Sbjct: 139 RLYQHGDRAESVESVRQTPE-PPYLPAAQSESSNAAEEAPSRSIPTAHVRPTHPLKSFAV 197
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
PA + P P +P PT P +S + S + SP P P++P
Sbjct: 198 PALPASMSTIEPKLP-STPLLTQQGPTLPKHSVKTASVGTLGRARSPLLPVTVPSAPDVL 256
Query: 1675 PTSPS 1679
T
Sbjct: 257 ETGGK 261
|
This family represents the C-terminus of eukaryotic neogenin precursor proteins, which contains several potential phosphorylation sites. Neogenin is a member of the N-CAM family of cell adhesion molecules (and therefore contains multiple copies of pfam00047 and pfam00041) and is closely related to the DCC tumour suppressor gene product - these proteins may play an integral role in regulating differentiation programmes and/or cell migration events within many adult and embryonic tissues. Length = 295 |
| >gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-08
Identities = 66/284 (23%), Positives = 91/284 (32%), Gaps = 29/284 (10%)
Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
SP SP + SP S + SP S SP+ PS P S S
Sbjct: 73 SPERSPALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDSI 132
Query: 1590 SPTSPSYSPTSPSY-SPTS---PAYSPTSPAYSPTSPAYSPTSPSYSPTS------PSYS 1639
S +S P SP + S S A PT P +P+ + S S
Sbjct: 133 SSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDG 192
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS--------PGYSPTSPSYSPTSPTYSPTS 1691
P +P P S + S P ++ T SP+ P S +
Sbjct: 193 FQLP--APKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFA 250
Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
P S SL P P L P + P PT+ S S ++ + P+ + S
Sbjct: 251 P---DDSTPLDISLFNFPLIPLLPPEALDLPA-----PTAVSSSSSTFA-VPALTSSSVD 301
Query: 1752 SPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
S+ P + S PSS+S Y +T
Sbjct: 302 QSATPLDQGFSNFGSNMYSEPLNPTNDSLLYGLPSSSSLYANRT 345
|
Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418 |
| >gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-08
Identities = 65/329 (19%), Positives = 99/329 (30%), Gaps = 47/329 (14%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP----GYSPTSPGYSPTSPTYSPSSPG 1546
SP SP S SPS + SP + SP+ P+ P S
Sbjct: 73 SPERSPALSSERL-LSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDS 131
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--------- 1597
S +S P + S S SP ++PT + S
Sbjct: 132 ISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSD 191
Query: 1598 ------PTSPSYSPTSPAYSPTSPAYSPTSPA-YSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
P P S S P ++ T + + S SP+ P S +P
Sbjct: 192 GFQLPAPKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAP 251
Query: 1651 SYS----------PTSPSYSPTSPAYS-PTSPGYSPTSPSYSPTSPTYSPTSPS------ 1693
S P P P + PT+ S ++ + + + S +
Sbjct: 252 DDSTPLDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVDQSATPLDQGF 311
Query: 1694 YNPQSAKYSPSLAYSPSSPRL---SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
N S YS L + S S +S Y+ + + S+S SP S + P+ SP
Sbjct: 312 SNFGSNMYSEPLNPTNDSLLYGLPSSSSLYANRTIFPAWASTSVSPLDFSTLFNQPSPSP 371
Query: 1751 SSPYNAGGGNPDYSPSSPQYSPSAGYSPS 1779
+ +P+ P S
Sbjct: 372 MAS------QSILAPAQPTSPSPVALPSS 394
|
Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 6e-08
Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 4/127 (3%)
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
+P P + + + P S SP+ P S P+ P
Sbjct: 147 DPNPGPPLDEE-DEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 1599 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
+ S P+S P+ + P P+ P P S + +P
Sbjct: 206 SPSDSSLPPA---PSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPP 262
Query: 1659 YSPTSPA 1665
+ +PA
Sbjct: 263 SASATPA 269
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-08
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 3/106 (2%)
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
S PG + SP+ P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
PS + P PA P P S + +P + +P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATP 268
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|235052 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta'; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-08
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
LV GE +G +AAQSIGEP TQ+T+ TFH GV V
Sbjct: 307 LVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEV 344
|
Length = 1331 |
| >gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 9e-08
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
LV GE +G +A QSIGEP TQ+TL TFH GV
Sbjct: 310 DLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 343
|
Length = 1364 |
| >gnl|CDD|233840 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit, predominant form | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-07
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 44/147 (29%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG----- 1363
+++ + GI+AV+ L+ E++ V G +N +H+ ++ M + + IT G
Sbjct: 991 DLLRIKGIQAVQEYLVKEVQKVYRLQGVEINDKHIEVIVRQMLRK---VRITDSGDSNLL 1047
Query: 1364 ----INRN-------------------------------DTGPMMR-CSFEETVDILLDA 1387
I+ + +T + SF+ET +L DA
Sbjct: 1048 PGELIDIHEFNEENRKLLEQGKKPASAIPQLLGITKASLNTESFLSAASFQETTKVLTDA 1107
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTG 1414
A+ + DYL G+ EN+++G L P GTG
Sbjct: 1108 AIKGKVDYLLGLKENVIIGNLIPAGTG 1134
|
Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain [Transcription, DNA-dependent RNA polymerase]. Length = 1140 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-07
Identities = 35/197 (17%), Positives = 51/197 (25%), Gaps = 14/197 (7%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYS-PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
P+ +P P + S P P Y P P+ P
Sbjct: 87 TVDPSAGEPAPP-PPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPA 145
Query: 1607 SPAYSPTSP--AYSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
PAY A+ + Y + P +P SP S + Y
Sbjct: 146 YPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQ-----ERDREPYDAG 200
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
P Y Y P + P T P A + P +P P P
Sbjct: 201 RPEYDQRRRDYDHPRPDWDR--PRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRP 258
Query: 1723 TSPNYSPTSSSYSPTSP 1739
++P + +P
Sbjct: 259 SAPGPLAAQPAPAPGPG 275
|
Length = 617 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 1e-07
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
+ +S PA +P + P+ +PTS + + +PT +
Sbjct: 24 TNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFD 83
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSY 1652
P+ +P + PA +P A A + TS + + +P+ + TS S P ++
Sbjct: 84 PAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAH 143
Query: 1653 SPTSP 1657
+ SP
Sbjct: 144 TQHSP 148
|
Length = 566 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 17/112 (15%), Positives = 30/112 (26%), Gaps = 1/112 (0%)
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAY 1624
+ + P S SP+ P S P+ P + S P+ +
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP 225
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
+P+ P P T+ P++ A G +
Sbjct: 226 PSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 1e-07
Identities = 63/264 (23%), Positives = 94/264 (35%), Gaps = 20/264 (7%)
Query: 1449 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVG---GMAFSPTSSPGY-SPSSPG 1504
+ +S + Y+D ++PG +L + + ++ V M SP Y SPSSP
Sbjct: 34 ADLSSSSYYD--LNPGAGLRRSLPSTSSSSSKRPKTVSMEEEMDTSPGGEDFYTSPSSP- 90
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
S SS + G + P +S SP S S + T + +
Sbjct: 91 -SSSSANWHEVEGGM-SSPTMKKPDKSLFSSPSPQDS-SPRLSAFTQHHRPVITGHSGIS 147
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTS-----PSYSPTSPSYSPTSPAYSPTSPAYSP 1619
+ + SP + PTSP SY P + P P P P+S
Sbjct: 148 ASPHPTPSPLHFPTSPILPQQPSSYFPHTAIRYPPHLHPQDPLKEFVQLVCDPSSQQAGQ 207
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSP-SYSPTSPAYSPTSPGYSPT 1676
+ + P++ +P +P P P T P + S A SPTSP YS
Sbjct: 208 PNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLPMPDTKPPTTSTEGGATSPTSPTYSTP 267
Query: 1677 SPSYSPTSPTYSPTSPS--YNPQS 1698
S S + P P+ QS
Sbjct: 268 STSPANRFVGLGPRDPAFVQQQQS 291
|
Length = 295 |
| >gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 1e-07
Identities = 60/233 (25%), Positives = 81/233 (34%), Gaps = 12/233 (5%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTS- 1579
S Y +PG S SS SP + SP+SPS S +
Sbjct: 38 SSSYYDLNPGAGLRRSLPSTSSSSSKRPKTVSMEEEMDTSPGGEDFYTSPSSPSSSSANW 97
Query: 1580 PSYSPTSPSYSPTSPSYSP-TSPSYSPTSPAYSPTSPAYSPTSPAYS-PTSPSYSPTSPS 1637
S + P S +SPS +SP S + + P +S ++ + SP
Sbjct: 98 HEVEGGMSSPTMKKPDKSLFSSPSPQDSSPRLSAFTQHHRPVITGHSGISASPHPTPSPL 157
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN-- 1695
+ PTSP SY P + P P P P P+S + S
Sbjct: 158 HFPTSPILPQQPSSYFPHTAIRYP--PHLHPQDPLKEFVQLVCDPSSQQAGQPNGSGQGK 215
Query: 1696 -PQSAKYSPSLAYSPSSPRLSPASPYSPTS--PNYSPTSSSYSPTSPSYSPSS 1745
P +P LA P P P P + P S + SPTSP+YS S
Sbjct: 216 VPNHFLPTPMLAPPPPPPMARPVPLPMPDTKPPTTSTEGGATSPTSPTYSTPS 268
|
Length = 295 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (132), Expect = 2e-07
Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
S +P+ + +PA + PA + +PA + +P+ + P+ + P+ + P+ +
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
P+ + PA + P + +P+ + +P + +P+ ++A A P+
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPA---KAAAPPAKAAAPPAKAAT 332
Query: 1715 SPASPYSP 1722
PA +P
Sbjct: 333 PPAKAAAP 340
|
Length = 357 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (133), Expect = 2e-07
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
TS + P+ +P + P+ +PTS + + +PT + PA +P A
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPTSP 1671
PA +P + + + TS + + +P+ + TS S P A++ SP
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP 148
|
Length = 566 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 17/128 (13%)
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS-PTYSPTSPSY 1694
+ + P S SP+ P S P+ P + S P+ +
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDT-- 223
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
P SP +P P P P S + +P + ++P
Sbjct: 224 --------------PPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
Query: 1755 NAGGGNPD 1762
GG D
Sbjct: 270 PIGGITLD 277
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 3e-07
Identities = 55/235 (23%), Positives = 78/235 (33%), Gaps = 12/235 (5%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--AYSPTSPAYSP 1619
P + + SP P P P SP AY P P
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPR--PLSPYTAYEDLKP---P 383
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
TSP PT PS SP S + SP S S P + P SP
Sbjct: 384 TSP--IPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSP- 440
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
Y+ PTSPS + SPS++ + S P + +P + + +P ++ P SP
Sbjct: 441 YARYEDLKPPTSPSPTAPTGV-SPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSP 499
Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ 1794
Y+ P+SP A S+ + +P +Q P+
Sbjct: 500 -YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPR 553
|
Length = 576 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 3e-07
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
TS A P+ +P + P+ +PTS + + +PT + P+ +P A
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPA 1665
PA +P A + + TS + + +P+ + TS + P+ SP A
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
Query: 1666 YSPT 1669
Y+ +
Sbjct: 153 YTRS 156
|
Length = 566 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 3e-07
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 1/125 (0%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
TS + P+ +P + P+ +PTS + + +PT A PA +P A
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
P+ +P + + + TS + + +P+ + TS A P T S P
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAH-TQHSPPPF 151
Query: 1684 SPTYS 1688
+ T S
Sbjct: 152 AYTRS 156
|
Length = 566 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 26/107 (24%), Positives = 32/107 (29%), Gaps = 4/107 (3%)
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
S PG SP+ P S P+ P S S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSP 1608
PS + P P+ P P S + PT PS S T
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 1/112 (0%)
Query: 1510 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS-PSYSPTSPSY 1568
+ PG SP+ P S PS P + S PS +
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP 225
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
+P+ P P T+ P++ A +
Sbjct: 226 PSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 3e-07
Identities = 62/256 (24%), Positives = 96/256 (37%), Gaps = 30/256 (11%)
Query: 1558 SPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS------YSPTS 1607
+P + T P++S +S Y + S + +S S P + S SP
Sbjct: 21 TPIAAGTGPNFSLADLSSSSYYDLNPGAGLRRSLPSTSSSSSKRPKTVSMEEEMDTSPGG 80
Query: 1608 PAYSPTSPAYSPTSPAYSPTS-PSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPA 1665
+ SP+SP+ S + S + P S +SPS +SP S +
Sbjct: 81 EDFYT-----SPSSPSSSSANWHEVEGGMSSPTMKKPDKSLFSSPSPQDSSPRLSAFTQH 135
Query: 1666 YSPTSPGYS-PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP----- 1719
+ P G+S ++ + SP + PTSP Q + Y P A P L P P
Sbjct: 136 HRPVITGHSGISASPHPTPSPLHFPTSPILPQQPSSYFPHTAIR-YPPHLHPQDPLKEFV 194
Query: 1720 ---YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS--- 1773
P+S + S P++ +P +P P P P + + S
Sbjct: 195 QLVCDPSSQQAGQPNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLPMPDTKPPTTSTEG 254
Query: 1774 AGYSPSAPGYSPSSTS 1789
SP++P YS STS
Sbjct: 255 GATSPTSPTYSTPSTS 270
|
Length = 295 |
| >gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1632 SPTSPSYSPTSPSY---SPTSPSYSPTS--PSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+ +Y S + + +SP Y PT+ PS P+ P + + P
Sbjct: 10 NHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALAAHPGWSQ 69
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT--------------SPNYSPTSS 1732
+ S ++NP S +YS S P + + P
Sbjct: 70 AAAESSAFNPGSPHPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSGGREQYGAALRPLGG 129
Query: 1733 SYSPTSPSY-SPSSPTYSPSSPYNAG 1757
SYS P+Y SP + P+++
Sbjct: 130 SYSSPYPAYMSPELAPSWTAGPFDSS 155
|
GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators. Length = 177 |
| >gnl|CDD|132724 cd02737, RNAP_IV_NRPD1_C, Largest subunit (NRPD1) of Higher plant RNA polymerase IV, C-terminal domain | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 1289 LAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCD 1348
+ VM + +D R+ + +I VLGI+A + L +S G V HL ++ D
Sbjct: 246 IPVM--DLIDWERSMPYSIQQIKSVLGIDAAFEQFVQRLESAVSMTGKSVLREHLLLVAD 303
Query: 1349 TMTYRGHLMAITRHGINR-----NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+MTY G + + G + P F + L AA SD L GV +
Sbjct: 304 SMTYSGEFVGLNAKGYKAQRRSLKISAPFTEACFSSPIKCFLKAAKKGASDSLSGVLDAC 363
Query: 1404 MLGQLAPIGTGD 1415
G+ AP+GTG
Sbjct: 364 AWGKEAPVGTGS 375
|
Higher plants have five multi-subunit nuclear RNA polymerases: RNAP I, RNAP II and RNAP III, which are essential for viability; plus the two isoforms of the non-essential polymerase RNAP IV (IVa and IVb), which specialize in small RNA-mediated gene silencing pathways. RNAP IVa and/or RNAP IVb might be involved in RNA-directed DNA methylation of endogenous repetitive elements, silencing of transgenes, regulation of flowering-time genes, inducible regulation of adjacent gene pairs, and spreading of mobile silencing signals. NRPD1a is the largest subunit of RNAP IVa, whereas NRPD1b is the largest subunit of RNAP IVb. The full subunit compositions of RNAP IVa and RNAP IVb are not known, nor are their templates or enzymatic products. However, it has been shown that RNAP IVa and, to a lesser extent, RNAP IVb are crucial for several RNA-mediated gene silencing phenomena. Length = 381 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-07
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 4/115 (3%)
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS-PSYSPTSPSY 1638
+ + P S SP+ P S P+ P + S PS +
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP 225
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
+P+ P P T+ PT PS S T +
Sbjct: 226 PSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK---PTPPSASATPAPIGGITLD 277
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 5/113 (4%)
Query: 1524 PGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
+ PG + SPS P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
PS + P P+ P P + + P S + +P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK--PTPPSASATPAPIGG 273
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
+ S + + SP P+S P+ P SP PSSP S PA P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFP-----SPPEDPSSPSDSSLPPA--PSS 218
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
PS + P P+ P P S + +P + +PA
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 6e-07
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 35/289 (12%)
Query: 1510 PGYSPTSPGYSPTSPGYSPTS--PGYSPTSPTYSPSSPGYSPTS-PAYSPTSPSYSPTSP 1566
P + +PG P P SPT+ + S+P Y+ T P P+ PT+
Sbjct: 553 PASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQ 612
Query: 1567 SYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
S+ P ++P P P P P +P P P T
Sbjct: 613 SHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFP--TPHQP------PQVEITPYKP 664
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
+ T + P P SPT + ++P + P +P +P P +P + P +
Sbjct: 665 TWTQIGHIPYQP--SPTGANTM-LPIQWAPGTMQPPPRAP--TPMRPPAAPPGRAQRPAA 719
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS 1744
T P+ P A+ A +P R A+P P +P + P+ +P
Sbjct: 720 ATGRARPPAAAPGRARPP---AAAPGRARPPAAAPGRARPPAAAPGRAR----PPAAAPG 772
Query: 1745 SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
+PT P P +P +PQ P +P P + ++ Q P
Sbjct: 773 APTPQP----------PPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMP 811
|
Length = 991 |
| >gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 7e-07
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
+ PGE +G VAAQSIGEP TQ+TL TFH G ++++
Sbjct: 2273 MSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRS 2309
|
Length = 2890 |
| >gnl|CDD|233841 TIGR02388, rpoC2_cyan, DNA-directed RNA polymerase, beta'' subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 7e-07
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 30/123 (24%)
Query: 749 NNLKAMVTAGSKGSFINISQMTACVGQQ----NVEGKRIPFGFVDRTLPHFTKDDYGPES 804
N++ M +G++G N+SQ+ VG + N +G+ I LP
Sbjct: 119 NSVYMMAFSGARG---NMSQVRQLVGMRGLMANPQGEII-------DLP----------- 157
Query: 805 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 862
++ ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ + G
Sbjct: 158 ---IKTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREEDCG 214
Query: 863 TVR 865
T R
Sbjct: 215 TER 217
|
The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria [Transcription, DNA-dependent RNA polymerase]. Length = 1227 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 8e-07
Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 4/112 (3%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+ ++ S PG SP+ P S P+ P + S P+
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PS 217
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSP 1601
S PS + P P+ P P S + PT PS S T
Sbjct: 218 SFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 8e-07
Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
+ + P S SP+ P S P SP P+SP+ S PA P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFP-SPPEDPSSPSDSSLPPA--PSSFQSD 222
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
PS + P P+ P P + + P S + +P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK--PTPPSASATPAPIGG 273
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (128), Expect = 9e-07
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 1522 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
TS P +P P +PTS A + +PT + P+ +P +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY----SPTSPS 1637
P+ +P + + + TS A + +PA + TS A P+ SP +
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
Query: 1638 YSPT 1641
Y+ +
Sbjct: 153 YTRS 156
|
Length = 566 |
| >gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-06
Identities = 72/386 (18%), Positives = 123/386 (31%), Gaps = 45/386 (11%)
Query: 1467 FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
F+ NL ++ + + + S +S + + S P S +P
Sbjct: 56 FTLNLPINNSVNHKITSSSSSRRKPSGS---WSVAISSSTSGSQSLLMELP-SSSFNPST 111
Query: 1527 SPTSPGYSPTSPTYS---PSSPGYSPTSPAY---SPTSPSYSPTS-----PSYSPTSPSY 1575
S + S S T SS S ++ + S P +P + S +S
Sbjct: 112 SSRNKSNSALSSTQQGNANSSVTLSSSTASSMFNSNKLPLPNPNHSNSATTNQSGSSFIN 171
Query: 1576 SPTSPSY-SPTSPSYSPTSPSYSPTS--PSYSPTSPAYSPTSPAYSPTSPA--------- 1623
+P S S T+ S TS P ++ S ++ A + TSP+
Sbjct: 172 TPASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSP 231
Query: 1624 ---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
+S + S P + S + + +S TS S S + +
Sbjct: 232 NNLFSTSDLSPLPDTQSV-ENNIILNSSSSINELTSIYGSVPSIRNLRGLNSALVSFLNV 290
Query: 1681 SPTSPTYS-----PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
S +S +S SP+ +P + ++ L SSP + S +
Sbjct: 291 SSSSLAFSALNGKEVSPTGSPSTRSFARVL--PKSSPNNLLTEILTTGVNPPQSLPSLLN 348
Query: 1736 PTSPSYSPSSPTYSPSS---PYNAGGGNPDYSPSSPQYS---PSAGYSPSAPGYSPSSTS 1789
P S S + S P N S S+ YS PS S S + +
Sbjct: 349 PVFLSTSTGFSLTNLSGYLNPNKNLKKNTLSSLSNLGYSSNVPSPSSSESTRNILGNISP 408
Query: 1790 QYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+ +N + + K + SS
Sbjct: 409 NFKTSSNLTNLNS-LLKEKLSNSSSV 433
|
Length = 777 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 28/139 (20%), Positives = 43/139 (30%), Gaps = 15/139 (10%)
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT 1730
+ P + SP+ P + PS PSSP S P P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA-PSSFQSDTP 224
Query: 1731 SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
S + P P P P S+ + P+ P + ++ +
Sbjct: 225 PPSPESPTNPSPPPGPAAPPPPP-----VQQVPPLSTAK--------PTPP-SASATPAP 270
Query: 1791 YTPQTNRDDSTTKDDKNTK 1809
T DD+ K K+ K
Sbjct: 271 IGGITLDDDAIAKAQKHAK 289
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (124), Expect = 2e-06
Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
S +PA + +PA + PA + +P+ + +P+ + P+ + P+ + P+ +
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
PA + P + P+ + +P + +P AK + + A + + P + A P
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAP------AKAAAAPAKAAAPPAKAAAPP-- 327
Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
+ + T P+ + + P + ++P G
Sbjct: 328 -----------AKAATPPAKAAAPPAKAAAAPVGKKAG 354
|
Length = 357 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 2e-06
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 4/124 (3%)
Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1574
TS P +P P +P+S A +PT + P+ +P +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY----SPTSPS 1630
P+ +P + + + TS + + +PA + TS A PA SP +
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
Query: 1631 YSPT 1634
Y+ +
Sbjct: 153 YTRS 156
|
Length = 566 |
| >gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045) | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 73/312 (23%), Positives = 95/312 (30%), Gaps = 33/312 (10%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTS-PGYSPTSPT-YSPSSPGYSP 1549
S G S S S ++P + + G + P+S PG S + T + G P
Sbjct: 34 SGLSRGNSFLSNRNSDAAPSGTDSLSGRPASRLNREPSSRPGSSHSEATIVRQAKEGERP 93
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPT- 1606
+P P PS P+ P S S S S PS S T +SPT
Sbjct: 94 ATP--PEARPDEGFVRPSL-PSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTK 150
Query: 1607 -----SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPT 1655
S P SP + P P S S + S
Sbjct: 151 ATWLESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTP 210
Query: 1656 SPSYSPTSPAYS-----PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
P SP+ S P+S T P + T S P P P
Sbjct: 211 PPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAP-----KPRETLDPK 265
Query: 1711 SPRLSPASPYSPT---SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSS 1767
SP +P + SP SP S + SPS + SP + +P SP
Sbjct: 266 SPEKAPPIDTTEEELKSPEASPKESEEASARKR-SPSLLSPSPKAESPKPLASPGKSPRD 324
Query: 1768 PQYSPSAGYSPS 1779
P SP
Sbjct: 325 PLSPRPKPQSPP 336
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 3/111 (2%)
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
+ + P S SP+ P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1689 PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
PS + P +P P + P S P S++ +P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|235052 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta'; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-06
Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 25/135 (18%)
Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
SF+ET +L +AA+ +SD+LRG+ EN+++G+L P GTG
Sbjct: 1184 SFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTG------------------FSG 1225
Query: 1436 YMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
+ E + P GY NLR D PY +
Sbjct: 1226 FEE-------ELSAEAGPHPDILAEDPAGYRRMQNLRPDYTVDMPARPYASSLDDPSDED 1278
Query: 1496 PGYSPSSPGYSPSSP 1510
+ S G PSS
Sbjct: 1279 LEATRSRHGIDPSSS 1293
|
Length = 1331 |
| >gnl|CDD|233841 TIGR02388, rpoC2_cyan, DNA-directed RNA polymerase, beta'' subunit | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-06
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
LV GE +G +AAQSIGEP TQ+T+ TFH GV V
Sbjct: 305 LVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEV 342
|
The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria [Transcription, DNA-dependent RNA polymerase]. Length = 1227 |
| >gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor (transactivator) | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-06
Identities = 53/250 (21%), Positives = 79/250 (31%), Gaps = 25/250 (10%)
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPAYSPTSPAYSPTSP 1622
SP S + T P S SPS + S S+S PA + SP ++
Sbjct: 204 ETRASPLSQFHGFTPHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQ-SPREETSAE 262
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
+P SPS S P++ + S P S Y P S P+
Sbjct: 263 PLAPASPS------SRRPSTAQEEQIACSSPQAEPEQGVQS--YVPQSSDSRPSCFPAPS 314
Query: 1683 TS-PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT-SSSYSPTSP- 1739
T+ PT+ P P+ N ++ + +P + S +P S S SP
Sbjct: 315 TTQPTFLP--PNTNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPP 372
Query: 1740 --SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG-------YSPSSTSQ 1790
S SS +PS + + Q ++ P PG
Sbjct: 373 SNSPLLSSLADTPSGAAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQELGPS 432
Query: 1791 YTPQTNRDDS 1800
+RD
Sbjct: 433 VMALLDRDQG 442
|
This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses. Length = 500 |
| >gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-06
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 38/146 (26%)
Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM------TYRGHLMAIT 1360
L +I+ VLG+EA+ ++ E++ V G ++ +HL ++ M T G M +
Sbjct: 2638 LHDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPGDTMYLV 2697
Query: 1361 RHGINR----------NDTG-------PMMR---------------CSFEETVDILLDAA 1388
I++ +++G P+++ SF+ET +L +AA
Sbjct: 2698 GESIDKLEVDRENDAMSNSGKRPAHYLPILQGITRASLETSSFISAASFQETTKVLTEAA 2757
Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTG 1414
+SD L G+ EN+++G+L P GTG
Sbjct: 2758 FCGKSDPLSGLKENVIVGRLIPAGTG 2783
|
Length = 2836 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 52.0 bits (124), Expect = 3e-06
Identities = 78/355 (21%), Positives = 107/355 (30%), Gaps = 43/355 (12%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 1527
SP+ R SP + Q S S S SS S TSP S
Sbjct: 27 SPDGRASPTNEDQRSS-------GRNSPSAASTSSNDSKAESTKKPNKKIKEEATSPLKS 79
Query: 1528 PTSPGYSPTSPTYSP--SSPGYSPTSPAYSPTSPSYSP--------TSPSYSPTSPSYSP 1577
P S T P + S T P SPS +S S S S
Sbjct: 80 TKRQREKPASDTEEPERVTAKKSKTQELSRPNSPSEGEGEGEGEGESSDSRSVNEEGSSD 139
Query: 1578 T--------SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
S S S SP + + S P P P + +P+ P +P
Sbjct: 140 PKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAAL-APSAPPPTP 198
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG-YSPTSPSYSPTSPTYS 1688
S P SP + P P+ S + P + P P +
Sbjct: 199 SAQAVPPQGSPIAAQ--PAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQP 256
Query: 1689 PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP-- 1746
P S +PQS+ + P P + + P P+S P + S P PS
Sbjct: 257 PAPSSRHPQSSHHGP-GPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQP 315
Query: 1747 -TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSST---SQYTPQTNR 1797
+++P S P P +PS P P T Q Q+++
Sbjct: 316 HSHTPPSQSALQPQQPPREQPLPP-------APSMPHIKPPPTTPIPQLPNQSHK 363
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|233841 TIGR02388, rpoC2_cyan, DNA-directed RNA polymerase, beta'' subunit | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-06
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L+ IT+ +N + + SF+ET +L +AA+ +SD+LRG+ EN+++G+L P GTG
Sbjct: 1165 LLGITKASLNTDSF--ISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTG 1221
|
The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria [Transcription, DNA-dependent RNA polymerase]. Length = 1227 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 18/133 (13%), Positives = 35/133 (26%)
Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGY 1512
G + G ++ + ++ + SP+ P SP P +
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDP 204
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
S S P +P + +PS P P T+ P++
Sbjct: 205 SSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264
Query: 1573 PSYSPTSPSYSPT 1585
+ +
Sbjct: 265 SATPAPIGGITLD 277
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-06
Identities = 77/389 (19%), Positives = 122/389 (31%), Gaps = 45/389 (11%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
T + P + P M P LR+ P+T F+ V +P P +
Sbjct: 611 TQSHIPETSAPRQWPMPLRPIPMRP-LRMQPIT---FNVLVFP---TPHQPPQVEITPYK 663
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
+ + G+ P P SPT ++P + P +P P P +P + P
Sbjct: 664 PTWTQIGHIPYQP--SPTGANTM-LPIQWAPGTMQPPPRAPT--PMRPPAAPPGRAQRPA 718
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
+ + P+ +P +P + P+ +P +P + PA +P +P
Sbjct: 719 AATGRARPPAAAPGRARPPAAAPGRAR-PPAAAPGRARPPAAAPGRAR-PPAAAPGAPT- 775
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
P P +P +P P P PTS P + P+
Sbjct: 776 -PQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP--------GQQGPTKQILR 826
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP---TSPNYSPTSS--------- 1732
+ P K + + + P SP S S +P + P
Sbjct: 827 QLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMRQL 886
Query: 1733 -SYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAP--GYSPSST- 1788
S + S +PT G +P P S + A P G S S +
Sbjct: 887 GSVRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAKTDAYVESQPPHGGQSHSFSV 946
Query: 1789 -----SQYTPQTNRDDSTTKDDKNTKGDK 1812
SQ QT TTK ++ G
Sbjct: 947 IWENVSQGQQQTLECGGTTKQERAMLGTG 975
|
Length = 991 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-06
Identities = 41/295 (13%), Positives = 94/295 (31%), Gaps = 27/295 (9%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
+AF P + G +P G G P + + G S + T G
Sbjct: 356 LAFEPAVTGGGAPGG-GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA------AGA 408
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+ A + + + + P+ P + + + + + + +
Sbjct: 409 ALAPKAAAAAAATRAEAPPAAPA------PPATADRGDDAADGDAPVPAKANARASADSR 462
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
P A +P S + P ++ P + +P++ + + + +P + +
Sbjct: 463 CDERDAQPPADS-GSASAPASDA--PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE 519
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY----SPSLAYSPSSPRLSPASPYSPT 1723
+P +P P +P + + +A + + S + A+
Sbjct: 520 DAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAA 579
Query: 1724 SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSP 1778
+P +P P +P + +P + G P+ + + Q + S G P
Sbjct: 580 APAAAPK-----PAAP--RVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
|
Length = 830 |
| >gnl|CDD|234794 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 5e-06
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
SF+ET +L +AA+ + D LRG+ EN+++G+L P GTG
Sbjct: 1098 SFQETTRVLTEAAIKGKVDPLRGLKENVIIGRLIPAGTG 1136
|
Length = 1156 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 3/118 (2%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+ + P + SP+ P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
P+ + P P+ P P S + + + L +
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDA 280
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|235052 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta'; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-06
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 815 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 865
GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ + GT R
Sbjct: 166 GLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREEDCGTTR 218
|
Length = 1331 |
| >gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 1548 SPTSPAYSPTSPSY---SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
+ AY S + + +SP Y PT+ PS P+ P S + + P
Sbjct: 10 NHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALAAHPGWSQ 69
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYS----PTS 1656
+ S A++P SP + P +YS + P + S Y P
Sbjct: 70 AAAESSAFNPGSP-HPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSGGREQYGAALRPLG 128
Query: 1657 PSYSPTSPAY-SPTSPGYSPTSP 1678
SYS PAY SP P
Sbjct: 129 GSYSSPYPAYMSPELAPSWTAGP 151
|
GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators. Length = 177 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-06
Identities = 49/233 (21%), Positives = 67/233 (28%), Gaps = 46/233 (19%)
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS----PS 1560
+ SP SPG SP + T+ P S SP + P
Sbjct: 226 HPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLSPLPRPSTRRGLLPNPR 285
Query: 1561 YSPTSPSYSPTSPSYSPTSP-----------SYSPTSPSYSPT----------------- 1592
S + P S +P P S P SP+ P
Sbjct: 286 LPRASRGHLPPPTSSAPPRPNGGLRRPLHLHSSRPNSPNLRPRRIRKNSLQQTRARLGHS 345
Query: 1593 ----------SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS-PTSPSYSPTSPSYSPT 1641
S P + P P A T+ A SPS P +
Sbjct: 346 KSLGQSPNLRSSQLPPPTKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALP 405
Query: 1642 SPSYSPTSPSYSPTS---PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
S + +S + P +SP+ SP+ P P +P + PT SP S
Sbjct: 406 SHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 6e-06
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
+V+ GE +G +AAQS+GEP TQ+T+ TFH GV +T GV I ++ KIK
Sbjct: 2329 IVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGV----MTRGVESSNIIASINAKIK 2380
|
Length = 2836 |
| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 6e-06
Identities = 52/253 (20%), Positives = 67/253 (26%), Gaps = 40/253 (15%)
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
P P + P +P S P P
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569
Query: 1619 PTSPAYS--PTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--PTSPG 1672
P S P P P P P P P S PT P SP P P SP
Sbjct: 570 SKIPTLSKKPEFPKDPKHPKDPE-EPKKPK-RPRSAQ-RPTRPK-SPKLPELLDIPKSPK 625
Query: 1673 Y--SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY--- 1727
SP SP P P P+SP P+ K SP+ P SP P P +
Sbjct: 626 RPESPKSPK-RPPPPQ-RPSSPE-RPEGPK-------IIKSPK-PPKSPKPPFDPKFKEK 674
Query: 1728 --------------SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
+ T+ + S + +P +P+ P P ++
Sbjct: 675 FYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFE 734
Query: 1774 AGYSPSAPGYSPS 1786
P A
Sbjct: 735 PIGDPDAEQPDDI 747
|
Length = 943 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 7e-06
Identities = 40/203 (19%), Positives = 56/203 (27%), Gaps = 14/203 (6%)
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
A P Y P T P + + + + S++ + T P S P P
Sbjct: 299 ATQPEYDEYDPLLNGAPITEPVAV--AAAATTATQSWAAPVEPVTQTPPVASVDVPPAQP 356
Query: 1613 T---SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
T P P + P +P Y S P P P P Y+P
Sbjct: 357 TVAWQPVPGPQTG-----EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPA 411
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY--SPSSPRLSPASPYSPTSPNY 1727
+ P Y+P P P Y P + A+ +P S Y
Sbjct: 412 AEQ-PAQQPYYAPA-PEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQ 469
Query: 1728 SPTSSSYSPTSPSYSPSSPTYSP 1750
P + P P P
Sbjct: 470 QPAAQEPLYQQPQPVEQQPVVEP 492
|
Length = 1355 |
| >gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-06
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 811 SYLR-GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV-KYD-GTVR 865
S R GL+ E+ G R+G++DTAV+T++ GY+ RRLV+ ++ I+V + D GT R
Sbjct: 167 SNFREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVRETDCGTTR 224
|
Length = 1364 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 7/118 (5%)
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
+ + P + SP+ P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS-PSYNPQSAKYSPSLAYSPS 1710
PS + +P+ P P T+ P+ SA +P +
Sbjct: 223 TPPPSPESPT---NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-05
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 1316 IEAVRRALLDELRVVISFDGSYV-------------NYRHLAILCDTMTYRGHLMAITRH 1362
IE + +L ++R++ S D ++ N R +A+ + L+ ITR
Sbjct: 2763 IEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGITRA 2822
Query: 1363 GINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
I + + SF+ET +L +A++ + D+L + EN++LG++ P+GTG +Y N
Sbjct: 2823 AIGSDSI--ISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTG---MYKNK 2877
Query: 1423 EMLKNAIE 1430
+++ +E
Sbjct: 2878 KIVLRTLE 2885
|
Length = 2890 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 1e-05
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
P +P P +PTS +P+ PA +P + P+
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPA 99
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY----SPTSPAYSPT 1620
+P + + + TS + + +P+ + TS + PA SP AY+ +
Sbjct: 100 VAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTRS 156
|
Length = 566 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 71/322 (22%), Positives = 94/322 (29%), Gaps = 29/322 (9%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
G SP + SS TSPG S P P P +
Sbjct: 4 GFPTSPRRPILHHSQRFLSESSSRLGCRTSPGLSSNLPLDHPKGTSSFPQLLRHPSLRLR 63
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
P P + P P S + S +P P +P
Sbjct: 64 LHPPPPPCPQNPRDFPSLQPLELPLHHSLL--RHVHETLKVSQAPGEQPKLPRAPQLPSH 121
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
+ +S + S PS S + P + PS P SP +
Sbjct: 122 PRRHRSLPHHLHHSSKHRNRLHARRSDVLPSLSNSRPVHELPKPSTPVLQPRRSPRKQLH 181
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA----YSPSSP---RLSPA-- 1717
P S S + S + SP Q A P LA + SP R SP
Sbjct: 182 RPLSLPRSLHLHNSRQHSSLHPRRSPRRQLQPAPRRPLLAENQLHPLPSPQPVRHSPGIL 241
Query: 1718 --SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
SP P + SP ++S SPSSP P G P+ P P
Sbjct: 242 GPSPLHPHTTRPSPPRPAFSR-----SPSSPLSPLPRPSTRRGLLPN--PRLP------- 287
Query: 1776 YSPSAPGYSPSSTSQYTPQTNR 1797
++ G+ P TS P+ N
Sbjct: 288 --RASRGHLPPPTSSAPPRPNG 307
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 59/243 (24%), Positives = 78/243 (32%), Gaps = 33/243 (13%)
Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPT---SPS 1588
+ SP SPG SP + T+ P S SP+SP PS +P
Sbjct: 226 HPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLSPLPRPSTRRGLLPNPR 285
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-------------- 1634
S + P S +P P P + +S P SP+ P
Sbjct: 286 LPRASRGHLPPPTSSAPPRPNGGLRRPLHLHSS---RPNSPNLRPRRIRKNSLQQTRARL 342
Query: 1635 --SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS-PTS 1691
S S + S P + P P P SP+ P
Sbjct: 343 GHSKSLGQSPNLRSSQLPPPTKRRLRLLPVPPPKVQALP--LTALAPLVRHSPSIPLPHP 400
Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPA--SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
PS P S A S RL P+ +SP+ SP+ + P +P S PT S
Sbjct: 401 PSALP-----SHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTPS 455
Query: 1750 PSS 1752
P S
Sbjct: 456 PPS 458
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|218232 pfam04731, Caudal_act, Caudal like protein activation region | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 35/130 (26%), Positives = 45/130 (34%), Gaps = 13/130 (10%)
Query: 1461 MSPGYLFSPNLRLSP---VTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP 1517
M PG + L L V+ Q+ Y G + + S + Y P
Sbjct: 1 MYPGSVRHSGLNLGAQNFVSAPQYPDYGGYHHVPGMNLDPHGQPSGAWGSP---YGPPRE 57
Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
+S PG P++ T+ T SP YSP P YSP P S S
Sbjct: 58 DWSAYGPGPGPSA-----TAATGSPGQMAYSP--PDYSPVHPPGPGPGLLQPADSGSVEQ 110
Query: 1578 TSPSYSPTSP 1587
SPS SP
Sbjct: 111 LSPSAQRRSP 120
|
This family consists of the amino termini of proteins belonging to the caudal-related homeobox protein family. This region is thought to mediate transcription activation. The level of activation caused by mouse Cdx2 is affected by phosphorylation at serine 60 via the mitogen-activated protein kinase pathway. Caudal family proteins are involved in the transcriptional regulation of multiple genes expressed in the intestinal epithelium, and are important in differentiation and maintenance of the intestinal epithelial lining. Caudal proteins always have a homeobox DNA binding domain (pfam00046). Length = 135 |
| >gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32 | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 1e-05
Identities = 60/361 (16%), Positives = 89/361 (24%), Gaps = 41/361 (11%)
Query: 1486 GGMAFSPTSSPGYSPSS-----PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1540
G S +S PG SPS P PG T P + S S
Sbjct: 349 RGGGSLKLDSVDAPGTSSYLFEPGLSPS-PNSGKEMPGILTTENLDLPLA---STDSTEM 404
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYS 1597
P S T + + + S
Sbjct: 405 DPEDKRGGAVKINNSGILAWGLKTPGLAVNDERSIAVSSDGITDVLDPPSPLRLHSSDKV 464
Query: 1598 PTSPSYSPTSPAYSPTSPAYSP------TSPAYSPTSPSYSPTSPSYSPTS--------- 1642
S S P+ S + T+ S S S S TS
Sbjct: 465 IDSVS-PPSKRRVSAPASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSI 523
Query: 1643 PSYSPTSPSYSPTSPSYSPTS------PAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN- 1695
P + + P SP A S SP + SP P+ + + +
Sbjct: 524 KELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPS-TAGSPRPKPSLGKFVIGTDPFAF 582
Query: 1696 PQSAKYSPSLAY-SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
+ + + ++ + + P S P S T +PSS +
Sbjct: 583 ANTVRLTDNMRGGNGVGSSVKPKGSASSKPLT-GPGSDLKPATLNGKTPSSSLVGAAR-- 639
Query: 1755 NAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
NAG + PS S TS + ++D D K +
Sbjct: 640 NAGASSKVKIPSGLGGFTSPISL-LESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGT 698
Query: 1815 R 1815
Sbjct: 699 E 699
|
The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 50.1 bits (118), Expect = 1e-05
Identities = 59/306 (19%), Positives = 74/306 (24%), Gaps = 26/306 (8%)
Query: 1497 GYSP---SSPGYSPSSPGYSPTSPGYSPTSPGYSPT-SPGYSPTS-PTYSPSSPGYSPTS 1551
G P PG GY P S PG+ PTS G+ S
Sbjct: 189 GQQPGQGQQPGQGQQGQQLGQGQQGYYPGQLQQSGQGQPGHYPTSLQQLGQGQQGHYLAS 248
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAY 1610
P P + + P P + P SP
Sbjct: 249 PQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQGQQGHQPAQGQQPGQGQPGHYPASPQQ 308
Query: 1611 SPT-SPAYSPTSPAYSPTS--PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAY 1666
P + P S S P + P P + P SP
Sbjct: 309 PGQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQGQQAQIPAQGQQPGQGQPGHYPASPLQ 368
Query: 1667 S-PTSPGYSPTSPSYS----------PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS 1715
P PG+ TS ++P P Q +
Sbjct: 369 QGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQKGQQPGQGQQPGQGQQGQQPGQGEQEQQ 428
Query: 1716 PASP---YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
P Y PTS P P Y P+S G G P + P+S Q P
Sbjct: 429 PGQGQPGYYPTSLQ-QPGQGQQPGQWQQPGQGQPGYYPTSLLQPGQGQPGHDPASLQ-QP 486
Query: 1773 SAGYSP 1778
G P
Sbjct: 487 GQGQQP 492
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-05
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
TS A PA +P A P+ +PTS + + +PT + P+ +P A
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTS-PSYNPQSAKYSPSLAYSPSSP 1712
P +P + + TS + A S A P
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDP 140
|
Length = 566 |
| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 49/233 (21%), Positives = 65/233 (27%), Gaps = 56/233 (24%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYS--PTSPGY--SPTSPGYSPTSPTYSPSSPG 1546
P P S SP P P SP SP SP P P PSSP
Sbjct: 593 EPKKPK--RPRSAQRPTRPK--SPKLPELLDIPKSPKRPESPKSP-KRPPPPQ-RPSSP- 645
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSY-----------------SPTSPSYSPTSPSY 1589
P P SP P SP P P + + T+ + S
Sbjct: 646 ERPEGPK-IIKSPK-PPKSPK-PPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESI 702
Query: 1590 SPTSPSYSPTSPSYSPTS-PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS------ 1642
+ +P +P +P P P P P P + P
Sbjct: 703 LKETLPETPGTPFTTPRPLPPKLPRDEE-FPFEPIGDPDAEQPDDIEFFTPPEEERTFFH 761
Query: 1643 --PSYSP--------------TSPSYSPTSPSYSPTSPA-YSPTSPGYSPTSP 1678
P+ +P + + P P SP+ + PG P+ P
Sbjct: 762 ETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLP 814
|
Length = 943 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 3e-05
Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+ P + TS A PA +P + P+ +PTS + + +PT +
Sbjct: 23 NTNIPIPELH--TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASE 80
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPT---SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
PA +P P+ +P +P + A +P+ A + ++ +
Sbjct: 81 KFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDP 140
Query: 1718 SPYSPTSP 1725
+ ++ SP
Sbjct: 141 AAHTQHSP 148
|
Length = 566 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 6/118 (5%)
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
+ P S SP+ P S P SP P+SPS S PA P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFP-SPPEDPSSPSDSSLPPA--PSSFQSD 222
Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
PS + +P+ P S+ + +P S + +P T
Sbjct: 223 TPPPSPESPT---NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 6e-05
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
S P S +P P + G+ + SS T + ++P P
Sbjct: 179 SWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPP 238
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
S SP + P++ S ++ T PA S +S +P PT
Sbjct: 239 ----SQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATP--PPT 292
Query: 1628 SPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTS 1663
+ P+ PT+ + S + P SP +PT+
Sbjct: 293 TKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329
|
Length = 408 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 7e-05
Identities = 39/225 (17%), Positives = 63/225 (28%), Gaps = 13/225 (5%)
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-----SYSPTSPSYSPTSP 1657
Y+ A P +S + A P Y P T P + + + S++
Sbjct: 280 YTARGVAADPDDVLFS-GNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVE 338
Query: 1658 SYSPTSPAYSPTSPGYSPT-----SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
+ T P S P PT P P +P Y QS P++ Y+
Sbjct: 339 PVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQ 398
Query: 1713 RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
+ P Y +P P Y+P+ G ++P
Sbjct: 399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP 458
Query: 1773 SAGYSPSAPGYSP--SSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+ Y P PQ + + + K +R
Sbjct: 459 QSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPAR 503
|
Length = 1355 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 7e-05
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
P +P P +PTS +PT P +P A P+
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPA 99
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPAYSPT 1613
+P + + + TS + + +P+ + TS + P+ SP AY+ +
Sbjct: 100 VAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTRS 156
|
Length = 566 |
| >gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 7e-05
Identities = 71/335 (21%), Positives = 102/335 (30%), Gaps = 57/335 (17%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY------ 1498
+P RSP S L SP+ + ++ SP G S + S
Sbjct: 73 SPERSPAL---------SSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERP 123
Query: 1499 ---SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
S S SSP P + SP + S + PT SP ++PT A S
Sbjct: 124 SKRPRSDSISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPT-PSLSPPHTPTDTAPS 182
Query: 1556 ---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--------PSYSPTSPSYS 1604
S P+ P P S + S P ++ T S SP+
Sbjct: 183 GKRKRRLSDGFQLPA--PKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTG 240
Query: 1605 PTSPAYSPTSPAYSPTSPAYS---PTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYS 1660
P S +P S P P P + PT+ S S ++ + + S
Sbjct: 241 DIPPPVSVFAPDDSTPLDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSV 300
Query: 1661 PTSP-AYSPT-----SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS------ 1708
S S YS + + P+S S + + S
Sbjct: 301 DQSATPLDQGFSNFGSNMYSEPLNPTNDSLLYGLPSSSSLYANRTIFPAWASTSVSPLDF 360
Query: 1709 ---PSSPRLSPAS------PYSPTSPNYSPTSSSY 1734
+ P SP + P PTSP+ SS
Sbjct: 361 STLFNQPSPSPMASQSILAPAQPTSPSPVALPSSE 395
|
Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is C-terminal to the homeodomain transcription factor region. Length = 418 |
| >gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 12/146 (8%)
Query: 1513 SPTSPGYSPTSPGY---SPTSPGYSPTS--PTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
+ Y S G+ + +SP Y PT+ P+ PS P + + + P
Sbjct: 10 NHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALAAHPGWSQ 69
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP--TSPAYSPTSPAYS 1625
+ S +++P SP P S S ++ P S A
Sbjct: 70 AAAESSAFNPG----SPHPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSGGREQYGAALR 125
Query: 1626 PTSPSYSPTSPSY-SPTSPSYSPTSP 1650
P SYS P+Y SP P
Sbjct: 126 PLGGSYSSPYPAYMSPELAPSWTAGP 151
|
GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators. Length = 177 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 7e-05
Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 7/160 (4%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
TS P S +P P + G+ + +S T T + S+P T
Sbjct: 176 KTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPE-PQT 234
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
P S PS SP P P++ S ++ T P+ S +S +P
Sbjct: 235 EPPPSQRGPSGSPQHP---PSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATP-- 289
Query: 1611 SPTSPAYSPTSPAYSPTSPSYS-PTSPSYSPTSPSYSPTS 1649
PT+ P PT+ + S + P SP +PT+
Sbjct: 290 PPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329
|
Length = 408 |
| >gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 1573 PSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
P++ +P + + S S +P +PA+ P S T PA+ S
Sbjct: 15 PAWGSRTPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGSRT-PAWGGASAWG 73
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
+ S S + +Y +P Y T AY P +PG + S S
Sbjct: 74 N--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
|
The C-terminal domain of the transcription elongation factor protein Spt5 is necessary for binding to Spt4 to form the functional complex that regulates early transcription elongation by RNA polymerase II. The complex may be involved in pre-mRNA processing through its association with mRNA capping enzymes. This CTD domain carries a regular nonapeptide repeat that can be present in up to 18 copies, as in S. pombe. The repeat has a characteristic TPA motif. Length = 121 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 9e-05
Identities = 37/207 (17%), Positives = 60/207 (28%), Gaps = 21/207 (10%)
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-- 1641
P Y P T P + A + + +++ + T P S P PT
Sbjct: 302 PEYDEYDPLLNGAPITEPVAV--AAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVA 359
Query: 1642 ---SPSYSPTSPSYSPTSPSYSPTSPAYS-PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
P P +P Y Y+ P P P P Y+P + Q
Sbjct: 360 WQPVPGPQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQ-PAQ 417
Query: 1698 SAKYSPSLAYSPSSPRLSPA--SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
Y+P+ P +PA P + + S+++P +Y P++
Sbjct: 418 QPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP-QSTYQTEQTYQQPAA--- 473
Query: 1756 AGGGNPDYSPSSPQYSPSAGYSPSAPG 1782
+ PQ P
Sbjct: 474 -----QEPLYQQPQPVEQQPVVEPEPV 495
|
Length = 1355 |
| >gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045) | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-05
Identities = 71/308 (23%), Positives = 90/308 (29%), Gaps = 54/308 (17%)
Query: 1462 SPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSS-PGYSPSSP--------GY 1512
P L N LS ++ P S PSS PG S S G
Sbjct: 32 LPSGLSRGNSFLSNRNSDAAPSGTDSLSGRPASRLNREPSSRPGSSHSEATIVRQAKEGE 91
Query: 1513 SPTSPGYSPTSPGYS----PTSPGYSPTSPTYSPSSPGYSPTSPAYSPT--SPSYSPTSP 1566
P +P + G+ P+ P S + S S P+ S T +SPT
Sbjct: 92 RPATPPEARPDEGFVRPSLPSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTKA 151
Query: 1567 SY------SPTSPSYSPTSPSYS--------------------PTSPSYSPTSPSYSPTS 1600
++ P SP + P P S
Sbjct: 152 TWLESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTPP 211
Query: 1601 PSYSPTSPAYS-----PTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSP 1654
P SP+ S P+S T P S T S +P + P SP +P
Sbjct: 212 PGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAP 271
Query: 1655 TSPSYS--PTSPAYSP-TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
+ SP SP S S S S SP+ SP K P S
Sbjct: 272 PIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGK----SPRDPLS 327
Query: 1712 PRLSPASP 1719
PR P SP
Sbjct: 328 PRPKPQSP 335
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 9e-05
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 1480 QFSP--YVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1537
+F+P Y+ G A+ P Y P +P S +PT + ++ +S SP +
Sbjct: 537 KFTPAQYIQGDAWIPGKGVPYIPGLFAGNPGSTNSTPTGSA-ASSNTTFSSDSPSTV-VA 594
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
P+ SP + G+ + PA S S + P+ SPS +P+SP S S SP S
Sbjct: 595 PSTSPPA-GHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESS 653
|
Length = 670 |
| >gnl|CDD|219094 pfam06583, Neogenin_C, Neogenin C-terminus | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 43/242 (17%), Positives = 64/242 (26%), Gaps = 12/242 (4%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
SP +P S +S P S S G+ S +
Sbjct: 23 SPHPNPSGTDTPIRSSQDITPVSSSAQSEPQSGQRRNSYRGHESEDSMSSLAARRGMR-- 80
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
P P S P ++ +P Y PS + P
Sbjct: 81 -PKMMIPMDSQPPQPVVS-AHPIHTLDNPQYPGILPSPRCGYLHHQ------FSLRPMPF 132
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
T S +P P P+ S + +P S + PT P
Sbjct: 133 STLTVQRLYQHGDRAESVESVRQTPE-PPYLPAAQSESSNAAEEAPSRSIPTAHVRPTHP 191
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT-SPNYSPTSSSYSPTSPSYSPS 1744
S P+ + P L +P + P P + + + SP P PS
Sbjct: 192 LKSFAVPALPASMSTIEPKLPSTPLLTQQGPTLPKHSVKTASVGTLGRARSPLLPVTVPS 251
Query: 1745 SP 1746
+P
Sbjct: 252 AP 253
|
This family represents the C-terminus of eukaryotic neogenin precursor proteins, which contains several potential phosphorylation sites. Neogenin is a member of the N-CAM family of cell adhesion molecules (and therefore contains multiple copies of pfam00047 and pfam00041) and is closely related to the DCC tumour suppressor gene product - these proteins may play an integral role in regulating differentiation programmes and/or cell migration events within many adult and embryonic tissues. Length = 295 |
| >gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 35/150 (23%), Positives = 50/150 (33%), Gaps = 26/150 (17%)
Query: 1660 SPTSPAYSPTSPGY---SPTSPSYSPTS--PTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
+ AY S G+ + +SP Y PT+ P+ P+ P Y S + L
Sbjct: 10 NHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLP--------YLQGCEASQQAHAL 61
Query: 1715 SPASPYSPTSPNYSP--TSSSYSPTSPSYSPSSPTYSPS--------SPYNAGGGNPDYS 1764
+ +S + S S + P SYS S P + P GG Y
Sbjct: 62 AAHPGWSQAAAESSAFNPGSPHPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSGGREQY- 120
Query: 1765 PSSPQYSPSAGYSPSAPGY-SPSSTSQYTP 1793
+ YS P Y SP +T
Sbjct: 121 -GAALRPLGGSYSSPYPAYMSPELAPSWTA 149
|
GATA transcription factors mediate cell differentiation in a diverse range of tissues. Mutation are often associated with certain congenital human disorders. The six classical vertebrate GATA proteins, GATA-1 to GATA-6, are highly homologous and have two tandem zinc fingers. The classical GATA transcription factors function transcription activators. In lower metazoans GATA proteins carry a single canonical zinc finger. This family represents the N-terminal domain of the family of GATA transcription activators. Length = 177 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 59/299 (19%), Positives = 76/299 (25%), Gaps = 31/299 (10%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P+ P P++P P S + S +S P SP
Sbjct: 151 PSLSNSRPVHELPKPSTPVLQPRRSPRKQLHRPLSLPRSLHLHNSRQHSSLHPRRSP-RR 209
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPAYSPTSPAYSPTSP-SYSPTSPSY 1638
P P SP SP + T+ P S SP+SP
Sbjct: 210 QLQPAPRRPLLAENQLHPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLS 269
Query: 1639 SPTSPSYSPT---SPSYSPTSPSYSPTSPAYSPTSPGYSPTSP----SYSPTSPTYSPTS 1691
PS +P S + P + +P P P S P SP P
Sbjct: 270 PLPRPSTRRGLLPNPRLPRASRGHLPPPTSSAPPRPNGGLRRPLHLHSSRPNSPNLRPRR 329
Query: 1692 PSYNP---------------QSAKYSPSLAYSPSSPRLSPASPYSP--TSPNYSPTSSSY 1734
N QS S P+ RL P P +
Sbjct: 330 IRKNSLQQTRARLGHSKSLGQSPNLRSSQLPPPTKRRL-RLLPVPPPKVQALPLTALAPL 388
Query: 1735 SPTSPSYS---PSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
SPS P S S ++ S S SPS P P +
Sbjct: 389 VRHSPSIPLPHPPSALPSHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPP 447
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 47.0 bits (110), Expect = 1e-04
Identities = 58/321 (18%), Positives = 71/321 (22%), Gaps = 14/321 (4%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYS-PTSPGYSPTSP---GYSPTSPGYSPTSPTYS 1541
G A P PG+ P+SP P PG+ TS G ++P
Sbjct: 342 GQQAQIPAQGQQPGQGQPGHYPASPLQQGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQK 401
Query: 1542 PSSPGY-SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
PG P P Y PTS P
Sbjct: 402 GQQPGQGQQPGQGQQGQQPGQGEQEQQPGQGQPGYYPTSLQ-QPGQGQQPGQWQQPGQGQ 460
Query: 1601 PSYSPTSPAY-SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
P Y PTS P + P S +
Sbjct: 461 PGYYPTSLLQPGQGQPGHDPASLQQPGQGQQPGQLQQPAQGQPGQQLAQGQQGQQPAQVQ 520
Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
PA P + P Q +
Sbjct: 521 QGQQPAQGQQGQQLGQGQQGQQPGQGQH-PAQGEQGQQPGQGQQGQQPGQGQQPGQGQPW 579
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSP-----TYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
Y PTSP S P Y +SP G G Y P+S Q P
Sbjct: 580 YYPTSPQESGQGQQPGQWQQPGQWQQPGQGQPGYYLTSPLQLGQGQQGYYPTSLQ-QPGQ 638
Query: 1775 GYSPSAPGYSPSSTSQYTPQT 1795
G P S + P +
Sbjct: 639 GQQPGQWQQSGQGQHGHCPMS 659
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
P PG +P + ++P+ S + ++ ++S SPS +PS SP P+ SP
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSA-----ASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSP 607
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
+P+ TSP P S SP++ SP S ++ + SP S
Sbjct: 608 PATPSKIVSPSTSP---PASHLGSPSTTPSSPESSIKVASTETASPES 652
|
Length = 670 |
| >gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-04
Identities = 54/290 (18%), Positives = 86/290 (29%), Gaps = 24/290 (8%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
GYS + + P+S P+ S TS S S S S + + S
Sbjct: 273 GYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSL 332
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
+SP+S T PS SP SP++ + S P S S TSP P
Sbjct: 333 WSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGKGEPASESTPSTSP--PPP 390
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS---L 1705
+ ++ +S + + +S S + + L
Sbjct: 391 GLADDIVRAIFATSSRSAPRKEELQNESSFPKLVRQENLQNIEKSAEGGILDAAVTEELL 450
Query: 1706 AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
+ L SP S S + S PD P
Sbjct: 451 KLTNEKDDLGSRGLDSPFS--RDTLLGSQRNKAQPELLVS--------------TPDKGP 494
Query: 1766 SSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+ Q + + S P +P + P + D+ T+ ++ SR
Sbjct: 495 AESQSAANLRVSWFTPIENPMREEKSAPASEEDEQTSLEESLISPSPCSR 544
|
This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667 |
| >gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription] | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 43/253 (16%), Positives = 71/253 (28%), Gaps = 14/253 (5%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTS--PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
+++P S P S +S P P S G T+ T
Sbjct: 158 PCSNAPSDSSEEPS-SSASFSVDPNDNNPMGSFQHNGSPQTNFIPLQNPQTQQYQQH--- 213
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
+S PT P + + P + P S T S + S + P
Sbjct: 214 -SSRKDHPTVPHS--NTNNGRPPAKFMIPELHSSHSTLDLPSDFISDSGFPNQSSTSIFP 270
Query: 1609 AYS---PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
S +P + P +P YS S S T P P+ SP + S
Sbjct: 271 LDSAIIQITPPHLPNNPPQENRHELYSNDSSMVSETPPP--KNLPNGSPNQSPLNNLSRG 328
Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
+ + S S +N + P+ + ++ +
Sbjct: 329 NPASPNSIIRENNQVEDESFNGRQGSAIWNALISTTQPNSGLHTEASTAPSSTIPADPLK 388
Query: 1726 NYSPTSSSYSPTS 1738
N + T+S +
Sbjct: 389 NAAQTNSGTRNNN 401
|
Length = 412 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 2e-04
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
P +P P +PTS +PT P +P PA
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPA 99
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSP 1601
+P + + + TS + + +P+ + TS S P +++ SP
Sbjct: 100 VAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP 148
|
Length = 566 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 6/118 (5%)
Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
+D F A + S P P SP P + S S P +P
Sbjct: 166 TNSDNSFPGEDADPASASPSDP------PSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSF 219
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
+ +P+ P P T+ P++ + +
Sbjct: 220 QSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 67/311 (21%), Positives = 91/311 (29%), Gaps = 53/311 (17%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP--- 1570
P+ P P++P P S + S +S P SP
Sbjct: 151 PSLSNSRPVHELPKPSTPVLQPRRSPRKQLHRPLSLPRSLHLHNSRQHSSLHPRRSPRRQ 210
Query: 1571 -----TSPSYSPTS--PSYSPTSPSYSP----TSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
P + P SP +SP SP + T+ P S SP
Sbjct: 211 LQPAPRRPLLAENQLHPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLSP 270
Query: 1620 TSPAYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPAYSP--- 1668
+ P S + P S +P P+ P S P SP P
Sbjct: 271 LPRPSTRRGLLPNPRLPRASRGHLPPPTSSAPPRPNGGLRRPLHLHSSRPNSPNLRPRRI 330
Query: 1669 ---------------TSPGYSPT--SPSYSPTSPTYSPTSPSYNPQS-----AKYSPSLA 1706
S G SP S P + P P+ +P +
Sbjct: 331 RKNSLQQTRARLGHSKSLGQSPNLRSSQLPPPTKRRLRLLPVPPPKVQALPLTALAPLVR 390
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS---PSYSPSSPTYSPSSPYNAGGGNPDY 1763
+SPS P P P + S + +S + P SSP+ SPS P G P
Sbjct: 391 HSPSIPL--PHPPSALPSHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRR-PGTPPP 447
Query: 1764 SPSSPQYSPSA 1774
S P SP +
Sbjct: 448 PASPPTPSPPS 458
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 1643 PSYSPTSPSYSPTSPSYSPT-SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
P++ +P + + S + +P G +P++ PT S T P++ SA
Sbjct: 15 PAWGSRTPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGSRT-PAWGGASAWG 73
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
+ S S SS P Y +P Y T S+Y P +P + + S
Sbjct: 74 NKSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
|
The C-terminal domain of the transcription elongation factor protein Spt5 is necessary for binding to Spt4 to form the functional complex that regulates early transcription elongation by RNA polymerase II. The complex may be involved in pre-mRNA processing through its association with mRNA capping enzymes. This CTD domain carries a regular nonapeptide repeat that can be present in up to 18 copies, as in S. pombe. The repeat has a characteristic TPA motif. Length = 121 |
| >gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
GG + +S +P+ +P + + S +P G +P + +
Sbjct: 1 GGRTPAWGASGSKTPAWGSRTPGTAAGGAPTARGG--SGSRTPAWGGAGSRTPAWG-GAG 57
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
+PA+ S + S S + +Y +P Y T +Y P +P
Sbjct: 58 PTGSRTPAWGGASAWGN--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGA 115
Query: 1606 TSPAYS 1611
+ + S
Sbjct: 116 MAGSAS 121
|
The C-terminal domain of the transcription elongation factor protein Spt5 is necessary for binding to Spt4 to form the functional complex that regulates early transcription elongation by RNA polymerase II. The complex may be involved in pre-mRNA processing through its association with mRNA capping enzymes. This CTD domain carries a regular nonapeptide repeat that can be present in up to 18 copies, as in S. pombe. The repeat has a characteristic TPA motif. Length = 121 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-04
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYS--PSSPGYSPTSPAYSPTSPSYSPTS--PSYSPTSPSYS 1576
P PG +PG + ++PT S S+ +S SP+ +PS SP + P +PS
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTV-VAPSTSPPAGHLGSPPATPSKI 614
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
+ + P S SP++ SP S ++ SP S
Sbjct: 615 VSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPES 652
|
Length = 670 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
P PT+ + SP P+ +P++ + + + P P +P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
P S + P Y+P +P
Sbjct: 424 T--PESAPKLTRAAIPVDEKPKYTPPAP 449
|
Length = 585 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-04
Identities = 38/209 (18%), Positives = 60/209 (28%), Gaps = 19/209 (9%)
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P +P Y + A P + +P P P P +P P P
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534
Query: 1672 GY----------------SPTSPSYSPTSPTYSPTSPSYNPQ-SAKYSPSLAYSPSSPRL 1714
+ P P+ P +P S P P+ S S A P +P
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPP- 2593
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
A P +P P + P+ +P P SP A + P +
Sbjct: 2594 QSARPRAPVDDRGDPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
Query: 1775 GYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
P+ S ++ + + S +
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681
|
Length = 3151 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-04
Identities = 32/189 (16%), Positives = 46/189 (24%), Gaps = 22/189 (11%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSS--PGYSPTSPGYSPTS-P 1524
+P + T P G + P PG P P P Y P
Sbjct: 96 APPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEP 155
Query: 1525 GYSPTSP----------GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1574
G P + G+ P +P SP+S Y P Y
Sbjct: 156 GAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQ-----ERDREPYDAGRPEYDQRRRD 210
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
Y P + + P P + P P++P
Sbjct: 211 YDHPRPDWDRPRRDRTDR-PEPPPGAGHVHRGGP---GPPERDDAPVVPIRPSAPGPLAA 266
Query: 1635 SPSYSPTSP 1643
P+ +P
Sbjct: 267 QPAPAPGPG 275
|
Length = 617 |
| >gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 59/249 (23%), Positives = 67/249 (26%), Gaps = 50/249 (20%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT------SPTYS--- 1541
P + P P PS P S S S P S T SPT +
Sbjct: 96 PPEARPDEGFVRPSL-PSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTKATWL 154
Query: 1542 ------PSSPGYSPTSPAYS--------------------PTSPSYSPTSPSYSPTSPSY 1575
P SP + P P S P
Sbjct: 155 ESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTPPPGS 214
Query: 1576 SPTSPSYS-----PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPAYSPTSPAYSPTSP 1629
SPS S P+S T P S T + +P P SP +P
Sbjct: 215 HSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPID 274
Query: 1630 SYS--PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+ SP SP S S S S SPS P P SP P SP
Sbjct: 275 TTEEELKSPEASPKESEEASARKRSPSLLSPS-----PKAESPKPLASPGKSPRDPLSPR 329
Query: 1687 YSPTSPSYN 1695
P SP N
Sbjct: 330 PKPQSPPVN 338
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 45.5 bits (106), Expect = 3e-04
Identities = 71/385 (18%), Positives = 87/385 (22%), Gaps = 95/385 (24%)
Query: 1496 PGYSPSSPGYSPS--------SPGYSPTSPGYSPTSPGYSPTSPGYSPT----------- 1536
PGY P+SP G PGY PTSP + P
Sbjct: 106 PGYYPTSPQQPGQLQQPAQGQQIGQGQQGRQPGQGQPGYYPTSPQHQPGQLQQPAQGQQG 165
Query: 1537 ---------------------SPTYSP---SSPGYSPTSPAYSPTSPSYSPTS------- 1565
P PG Y P
Sbjct: 166 QQIGQGQQGQQPEQGQQPGQGQQGQQPGQGQQPGQGQQGQQLGQGQQGYYPGQLQQSGQG 225
Query: 1566 -PSYSPTS--------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
P + PTS + SP P +
Sbjct: 226 QPGHYPTSLQQLGQGQQGHYLASPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQGQQG 285
Query: 1617 YSPTS--------PAYSPTSPSYSPT-SPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPA 1665
+ P P + P SP P + P S S P A
Sbjct: 286 HQPAQGQQPGQGQPGHYPASPQQPGQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQGQQA 345
Query: 1666 YSPTS--------PGYSPTSPSYS-PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
P PG+ P SP P P + TS Q + +P P
Sbjct: 346 QIPAQGQQPGQGQPGHYPASPLQQGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQKGQQP 405
Query: 1717 ASPYSP------TSPNYSPTSSSYSPTSPSYSPSSPTYS-----PSSPYNAGGGNPDYSP 1765
P P P Y P+S P G G P Y P
Sbjct: 406 GQGQQPGQGQQGQQPGQGEQEQQPGQGQPGYYPTSLQQPGQGQQPGQWQQPGQGQPGYYP 465
Query: 1766 SSPQYSPSAGYSPSAPGYSPSSTSQ 1790
+S P G PG+ P+S Q
Sbjct: 466 TSLL-QPGQG----QPGHDPASLQQ 485
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 3e-04
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
Y P + +P S + +PT S + ++ ++S SPS +PS SP PA SP +P+
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
TSP P S SP++ SP S ++ + SP S
Sbjct: 613 KIVSPSTSP---PASHLGSPSTTPSSPESSIKVASTETASPES 652
|
Length = 670 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 3e-04
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
Y P + +P S + +PT S + ++ ++S SPS +PS SP P+ SP +P+
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
TSP P S SP++ SP S ++ + SP S
Sbjct: 613 KIVSPSTSP---PASHLGSPSTTPSSPESSIKVASTETASPES 652
|
Length = 670 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-04
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P PT+ + SP P+ +P++ + + + P P +P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
P S + P Y+P +P
Sbjct: 424 T--PESAPKLTRAAIPVDEKPKYTPPAP 449
|
Length = 585 |
| >gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
SF+ET +L AA+ D+L+G+ EN++LG L P GTG
Sbjct: 1278 SFQETTRVLAKAALRGRIDWLKGLKENVILGGLIPAGTG 1316
|
Length = 1364 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-04
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
PT+ SP PT +PS + A + P P + +P P +P T
Sbjct: 370 KPTAAAPSPVRPTPAPS----TRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP 425
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
S + + P P Y+P +P
Sbjct: 426 ESAPKLTRAAIP-----VDEKPKYTPPAP 449
|
Length = 585 |
| >gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 4e-04
Identities = 45/212 (21%), Positives = 70/212 (33%), Gaps = 22/212 (10%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
SP S+ + + A S TS S +SP S S S + S T
Sbjct: 79 SPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSL---SFNPSSTQSRKDSGP 135
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
SP +P P+ S + ++ + S++ + S S
Sbjct: 136 GDGSPVQKRKNPLLPSSSTHG----------THPPIVFTDNNGSHAGAPNARSR-KEIPS 184
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
S S SP + ++ P+ S S + P S ++ R
Sbjct: 185 LGSQSMQLPSPHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLK----R 240
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
S +S S S N +P+SS S + S SS
Sbjct: 241 HSGSSGASLISSNITPSSS----NSEAMSTSS 268
|
Length = 1175 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-04
Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 7/225 (3%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
P + +P P+ +P + A +P +P +P + + + +P+ +P
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
+ S P +P +PA +PA +P + A + + + + + +
Sbjct: 432 ALAAARQASARGPGGAP-APA---PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
+P+ + P P SP + + + S P+ +
Sbjct: 488 APAPADDDPPPWEELPP-EFASPAPAQPDAAPAGWV-AESIPDPATADPDDAFETLAPAP 545
Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
++P A+ P P +S S + P + P
Sbjct: 546 AAAPAPRAAAATEPVVAP-RPPRASASGLPDMFDGDWPALAARLP 589
|
Length = 700 |
| >gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-04
Identities = 30/171 (17%), Positives = 44/171 (25%), Gaps = 3/171 (1%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS- 1604
S SP S + +P + TS P S TS Y+
Sbjct: 15 DSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTV 74
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
P P + + PA P +P P + S + S SP
Sbjct: 75 PRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPV 134
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN--PQSAKYSPSLAYSPSSPR 1713
+P S + + P S S Y + + R
Sbjct: 135 ILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKR 185
|
Length = 580 |
| >gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle | Back alignment and domain information |
|---|
Score = 44.9 bits (105), Expect = 4e-04
Identities = 59/331 (17%), Positives = 104/331 (31%), Gaps = 16/331 (4%)
Query: 1492 PTSSPGYSPSSPGYSPSSPG----YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
S+P G P +PG + + S S G +PT+ T + S
Sbjct: 57 AASAPAKESPQKGAPPVTPGKAGPAAAQAGEEEAKSSEEESDSEGETPTAATLTTSPAQA 116
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
P S PS + + S + + S S S P +
Sbjct: 117 KPLGKNSQVRPASTVTPGPSGKGANLPCPQKAGSAAVQVGKQEDSESSSEEESDSDGPGA 176
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT--------SPSYSPTSPSYSPTSPSY 1659
PA + +S PA P P + S S +S S +
Sbjct: 177 PAQAKSSGKLLQARPASGPAKGPPQKAGPVATQVKAERGKEDSESSEESSDSEEEAPAAM 236
Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
+ + +P + +P +PT + P A SP+ SPA
Sbjct: 237 TAAQAKPALKTPQTKASPRKGTPITPTSAKVPPVRVGTPAPRKAGAVTSPACAS-SPALA 295
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSP 1778
P+ +SS S + + + + G G + S P P G +P
Sbjct: 296 RGTQRPDEDSSSSEESESEEEGTAPATARGQAKS--VGKGLQVKAASVPTKGPLGQGTAP 353
Query: 1779 SAPGYSPSSTSQYTPQTNRDDSTTKDDKNTK 1809
PG + + +Q + D +++++ +++
Sbjct: 354 VPPGKTGPAVAQVKAEVQEDSESSEEESDSE 384
|
Length = 519 |
| >gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566) | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 1/118 (0%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
S S S S + + S +S +P+ P+S TS S S S S
Sbjct: 12 GDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS-SSSSFGLSKQRPS 70
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
S + SP++ A S A + TS S SP+ + +S S PS
Sbjct: 71 SLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSGNGPS 128
|
Family of related proteins that is plant specific. Length = 313 |
| >gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-04
Identities = 54/235 (22%), Positives = 74/235 (31%), Gaps = 30/235 (12%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP--SYSPTSPSYSP 1640
P + + SP P P P SP +Y P P
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVP--RPLSPYTAYEDLKP---P 383
Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
TSP PT PS SP S P P P SP + P P + ++
Sbjct: 384 TSPI--PTPPSSSPASSK--SVDAVAKPAEPDVVP-SPGSASNVPEVEP-AQVEAKKTRP 437
Query: 1701 YSPSLAY-------SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS--PSSPTYSPS 1751
SP Y SPS + SP ++ + + T+ + + P P
Sbjct: 438 LSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPL 497
Query: 1752 SPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDK 1806
SPY Y P SPS + +PSST++ N T D+
Sbjct: 498 SPY------AVYDDLKPPTSPSP--AAPVGKVAPSSTNEVVKVGNSAPPTALADE 544
|
Length = 576 |
| >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 5e-04
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
TS + P+ +P + P+ +PTS A +PT + P +P +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1694 YNPQSAKYSPSLAYSPS-SPRLSPAS-PYSPTSPNYSPTSSSYSPTSPSY----SPSSPT 1747
+P LA +P + S + +P + TS++ P+ SP
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
Query: 1748 YSPS 1751
Y+ S
Sbjct: 153 YTRS 156
|
Length = 566 |
| >gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 1483 PYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
P G +P ++ G +P++ G S S + +P G PT +P +
Sbjct: 15 PAWGSR--TPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGS----RTPAWGG 68
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
+S + + S + +Y +P Y T +Y P +P + S S
Sbjct: 69 ASAWGN--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
|
The C-terminal domain of the transcription elongation factor protein Spt5 is necessary for binding to Spt4 to form the functional complex that regulates early transcription elongation by RNA polymerase II. The complex may be involved in pre-mRNA processing through its association with mRNA capping enzymes. This CTD domain carries a regular nonapeptide repeat that can be present in up to 18 copies, as in S. pombe. The repeat has a characteristic TPA motif. Length = 121 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-04
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
PT+ A SP P+ +P++ + + + P P +P P P P +P S
Sbjct: 370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH--TPES 427
Query: 1608 PAYSPTSPAYSPTSPAYSPTSP 1629
+ P Y+P +P
Sbjct: 428 APKLTRAAIPVDEKPKYTPPAP 449
|
Length = 585 |
| >gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9 | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 5e-04
Identities = 51/258 (19%), Positives = 71/258 (27%), Gaps = 24/258 (9%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
S S + YS S S S S + P S S S T + S A
Sbjct: 376 IRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGA 435
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
+ PT S P + + S TSP+ S P
Sbjct: 436 VLLRRMNIKPTLAS-IPDEKPSNISVFEDSETSPNSSTLLR---------DPPPKKCGEE 485
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
S P +P +N S SP ++ +P P S S + S + SP
Sbjct: 486 SGH-LPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSP 544
Query: 1744 SSPTYSPSSPYNAG-----------GGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT 1792
S AG G P P+ + + S S+S +
Sbjct: 545 PPYPTLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPS 604
Query: 1793 PQT--NRDDSTTKDDKNT 1808
P S + D
Sbjct: 605 PTGVIGFPGSVPRFDHEN 622
|
The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626 |
| >gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (102), Expect = 5e-04
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
G SP +P SP + +P P+ +P +P+ + T P+ +P P P+ +PT P
Sbjct: 78 GQSPLAP--SPACAAPAPACPACAPAAPAPAVTCPAPAPACP------PATAPTCPP-PA 128
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
PA + +PA P++ P P +P +P+ P P Y S T+P
Sbjct: 129 VCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAP 188
Query: 1665 AYSP 1668
A SP
Sbjct: 189 AASP 192
|
Length = 280 |
| >gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 5e-04
Identities = 58/303 (19%), Positives = 101/303 (33%), Gaps = 9/303 (2%)
Query: 1460 MMSPGYLFSPNLRLSPVTDAQF-SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 1518
+SP Y+F + S V SPY + TS+ + + P GY G
Sbjct: 1072 FVSPSYIFLNSWASSYVAPGFLGSPYALPYFMNQTSALVGNTALPKGLNVFSGYMFG-AG 1130
Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPSY-SPTSPSYS 1576
++ Y ++P + +P S ++ S +S T+ + + +P S
Sbjct: 1131 TVASAFLYMNSTPQSPVLALLLAPYISYKFNALSLGFSITADAAIFSLFGIPAPQLLSSY 1190
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
+ S P ++ P S + + T A A S A +PT P S +S
Sbjct: 1191 IPTGSVLYQDPIFTYIPPGIIGMSGTNTFTFKAAQLQLSAASSPPAATTPTPPPSSSSSS 1250
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSP--TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
S S S + ++ + PA S G P + + + +
Sbjct: 1251 SAQSISTSPGQIQIVLNGSTTIHINFLFFPALSTPKIGQILAMPIVNSSG-AFISLYVNS 1309
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
SA ++ ++ Y S+ + P P + S S T+ S
Sbjct: 1310 A-ISANFNVTIEYVFSNGTVIKRFTDEPGQIFPLPLINGDEEVIISVENESTTF-NISAN 1367
Query: 1755 NAG 1757
N G
Sbjct: 1368 NLG 1370
|
Length = 1467 |
| >gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 36/129 (27%), Positives = 42/129 (32%), Gaps = 27/129 (20%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
GG G P PG+ S P PG P+S G T P
Sbjct: 200 GGGGGGGGGGSGPGPPPPGFKSSFPPPYG--PGAGPSSGY------GSGGTRSGQGGWGP 251
Query: 1546 GY--------------SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G+ S SY SPSYSP+S S S +S S S T
Sbjct: 252 GFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSSSSSSSTR----- 306
Query: 1592 TSPSYSPTS 1600
TS + TS
Sbjct: 307 TSSGFGGTS 315
|
This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown. Length = 317 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-04
Identities = 26/165 (15%), Positives = 43/165 (26%), Gaps = 11/165 (6%)
Query: 1476 VTDAQFSPY--VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
+TDA FS V + + G S P + + P +
Sbjct: 753 ITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAA 812
Query: 1534 SPTS----PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPT 1585
S T+ G + PA P + + P S +S S + +
Sbjct: 813 SRTASKRKSRSHTPDGGSESSGPARPPGAAA-RPPPARSSESSKSKPAAAGGRARGKNGR 871
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
P + + + A +PA P P
Sbjct: 872 RRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPM 916
|
Length = 1352 |
| >gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 1503 PGYSPSS---PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA---YSP 1556
P + S P + +PG + PT+ G S + + +P
Sbjct: 5 PAWGASGSKTPAWGSRTPGTAAGGA---PTARGGSGSRTPAWGGAGSRTPAWGGAGPTGS 61
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSP 1615
+P++ S + S S + +Y +P Y T +Y P +P +
Sbjct: 62 RTPAWGGASAWGN--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGS 119
Query: 1616 A 1616
A
Sbjct: 120 A 120
|
The C-terminal domain of the transcription elongation factor protein Spt5 is necessary for binding to Spt4 to form the functional complex that regulates early transcription elongation by RNA polymerase II. The complex may be involved in pre-mRNA processing through its association with mRNA capping enzymes. This CTD domain carries a regular nonapeptide repeat that can be present in up to 18 copies, as in S. pombe. The repeat has a characteristic TPA motif. Length = 121 |
| >gnl|CDD|219837 pfam08430, Fork_head_N, Forkhead N-terminal region | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 5/122 (4%)
Query: 1657 PSYSPTSPAYSPTSPG--YSPTS-PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
Y S +YS S G YS S +Y P + + + S N Y+ A + S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSG--YAGPGAMNGMSSS 58
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
S S SPS + GG+ + S + S
Sbjct: 59 SMNGMSPGYGGAGSPMGMMGMSSMGTSLSPSGTMGAMGPMPAGSGGSLSPNMSMSRASSQ 118
Query: 1774 AG 1775
Sbjct: 119 NN 120
|
The region described in this family is found towards the N-terminus of various eukaryotic fork head/HNF-3-related transcription factors (which contain the pfam00250 domain). These proteins play key roles in embryogenesis, maintenance of differentiated cell states, and tumorigenesis. Length = 137 |
| >gnl|CDD|221625 pfam12533, Neuro_bHLH, Neuronal helix-loop-helix transcription factor | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 22/88 (25%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P S + Y SPG SP S S + + S P
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLP------SPPHGSMSSSHSLHLKPHGYCSAYEP 91
Query: 1581 SYSPTSPSYSPTSPSY-SPTSPSYSPTS 1607
Y SP SP Y P SP S
Sbjct: 92 FYESHSPDC--GSPPYDGPLSPPLSING 117
|
This domain family is found in eukaryotes, and is approximately 80 amino acids in length. The family is found C-terminal to pfam00010. There is a single completely conserved residue W that may be functionally important. Neuronal basic helix-loop-helix (bHLH) transcription factors such as neuroD and neurogenin have been shown to play important roles in neuronal development. Length = 120 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-04
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
P PT+ A SP P +P++ + + + P P +P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
P S + P Y+P +P
Sbjct: 424 T--PESAPKLTRAAIPVDEKPKYTPPAP 449
|
Length = 585 |
| >gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor N terminal domain | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-04
Identities = 49/232 (21%), Positives = 63/232 (27%), Gaps = 21/232 (9%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
PT P SPS S P YS ++ P S + P +P +P SP
Sbjct: 84 PTKIKREPQSPSKELNSSCSQKQPPYPYGEKCLYSYSAYDRKPAS-GFKPPTPPSTPCSP 142
Query: 1609 -AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
T P+ P + + PS P+ SP P S SY S
Sbjct: 143 VNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSSYPSEHRFQRQLS---E 199
Query: 1668 PTSPGYSPTSPSYSPTSPTY----SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT 1723
P P P P Y S Y PQ K + P P
Sbjct: 200 PCLPFPPPPGRGSRDGRPPYHRQMSEPLVPYPPQGFK---QEYHDPLYEE--AGVPNQGP 254
Query: 1724 SPNY-----SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
P+ P +Y P S Y+ Y +
Sbjct: 255 FPHPMMIKQEPRDFTYDSEVPGC--HSSYGRAEGFYSNRHEGFSYDKEPRLF 304
|
The N terminus of the PEA3 transcription factors is implicated in transactivation and in inhibition of DNA binding. Transactivation is potentiated by activation of the Ras/MAP kinase and protein kinase A signalling cascades. The N terminal region contains conserved MAP kinase phosphorylation sites. Length = 336 |
| >gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-04
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
T + SP S TS + + P S S + SPS SP+ +SP+S
Sbjct: 109 QFTVVSQAKKSPPASKTSTPMNTSEPLVPGHS-----SFSDSPSRSA-SPSRKFSPSSTI 162
Query: 1727 -YSP-TSSSYSPTSPSYSPSSPTY-SPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGY 1783
SP + S P SPS S SP+Y S P N+ G S+ + SP A S
Sbjct: 163 QQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSGNR-----SNLRSSPWALRSSGDKK- 216
Query: 1784 SPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+T + +T + + T +
Sbjct: 217 -DITTDEKYLETFLAEVDEEQHMITSSAGKNA 247
|
Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 8e-04
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYS--PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
P PG +PG + ++P S ++ T+S SP P SP +
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIV 615
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
SPS SP P+ SPS +P+SP S S SP S
Sbjct: 616 SPSTSP--PASHLGSPSTTPSSPESSIKVASTETASPESS 653
|
Length = 670 |
| >gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (100), Expect = 8e-04
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G SP +P+ P+ +P PA +P +P+ + T P+ +P P P+ +PT P
Sbjct: 78 GQSPLAPS--PACAAPAPACPACAPAAPAPAVTCPAPAPACP------PATAPTCPP-PA 128
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
P+ + +P+ P++ P P +P +PA P P Y S T+P
Sbjct: 129 VCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAP 188
Query: 1651 SYSPTSPSYSP 1661
+ SP P
Sbjct: 189 AASPVLEPRIP 199
|
Length = 280 |
| >gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit | Back alignment and domain information |
|---|
Score = 43.9 bits (102), Expect = 9e-04
Identities = 66/343 (19%), Positives = 80/343 (23%), Gaps = 48/343 (13%)
Query: 1490 FSPTSSPGYSPSSPGY-SPSSPGYSPTSPGYSPTS----PGYSPTSPGYSPTSPTYSPSS 1544
+ +SP PG SP PG PG GY PTS
Sbjct: 47 YPSVTSPQQGSYYPGQASPQQPGQG-QQPGKGQEPGQGQQGYYPTSLQQPGQGQQIEKGK 105
Query: 1545 PGYSPTSPAYSPT--------SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
PGY PTSP P Y PTSP + P
Sbjct: 106 PGYYPTSPQQPGQLQQPAQGQQIGQGQQGRQPGQGQPGYYPTSPQHQPGQLQQPAQGQQG 165
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS------- 1649
P P Y P
Sbjct: 166 QQIGQGQQGQQPEQGQQPGQGQQGQQPGQGQQPGQGQQGQQLGQGQQGYYPGQLQQSGQG 225
Query: 1650 -PSYSPTS--------PSYSPTSPAY--SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
P + PTS + SP PG P+ Q
Sbjct: 226 QPGHYPTSLQQLGQGQQGHYLASPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQGQQG 285
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSP--TSPNYSPTSSSYSPTS---------PSYSPSSPT 1747
+ + P PASP P P + P SS S
Sbjct: 286 HQPAQGQQPGQGQPGHYPASPQQPGQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQGQQA 345
Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
P+ G G P + P+SP P PG+ +S Q
Sbjct: 346 QIPAQGQQPGQGQPGHYPASPLQQ-----GPGQPGHYLTSLQQ 383
|
Members of this family include high molecular weight subunits of glutenin. This group of gluten proteins is thought to be largely responsible for the elastic properties of gluten, and hence, doughs. Indeed, glutenin high molecular weight subunits are classified as elastomeric proteins, because the glutenin network can withstand significant deformations without breaking, and return to the original conformation when the stress is removed. Elastomeric proteins differ considerably in amino acid sequence, but they are all polymers whose subunits consist of elastomeric domains, composed of repeated motifs, and non-elastic domains that mediate cross-linking between the subunits. The elastomeric domain motifs are all rich in glycine residues in addition to other hydrophobic residues. High molecular weight glutenin subunits have an extensive central elastomeric domain, flanked by two terminal non-elastic domains that form disulphide cross-links. The central elastomeric domain is characterized by the following three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It possesses overlapping beta-turns within and between the repeated motifs, and assumes a regular helical secondary structure with a diameter of approx. 1.9 nm and a pitch of approx. 1.5 nm. Length = 779 |
| >gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 9e-04
Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 5/149 (3%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
+AF P + P + + T+ + +P +P P ++P +P+ P
Sbjct: 357 LAFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP 416
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
TS + + + P + S + S S P +PS +
Sbjct: 417 ETTSQLLAARQQ---LQRAQGATKAKKSEPAAASRARPVNSALERLASVRP-APSALEKA 472
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
PA + T+P P +P +
Sbjct: 473 PAKKEAYR-WKATNPVEVKKEPVATPKAL 500
|
Length = 647 |
| >gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 9e-04
Identities = 45/261 (17%), Positives = 78/261 (29%), Gaps = 27/261 (10%)
Query: 1421 NDEMLKNAIELQLPSYMEGLEFGM----------TPARSPVSGTPYHDGMMSPGYLFSPN 1470
+D +L N ++L Y++ LE G P R P G P + +++ L +
Sbjct: 68 DDLILSNKLQLGQFIYVDRLEPGSPVPVLRGIRPVPGRHPCVGNP--EDLVAADSLAFFS 125
Query: 1471 LRLSPVTDAQF----SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
+ V + + S ++S SP+ G P S + T
Sbjct: 126 DAVIQVIKRKKASSAPRRGSWDSSSKSASIDSSPTVIGPRPRSFSELNLT---DRTPAKV 182
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
+ SP+ S P S +S S S ++P +
Sbjct: 183 RSSRSELGAPSPSGGTSCPS----SSGGRRSSIGSRRLRGSASLRKKVAVLSAPRKPGSR 238
Query: 1587 PSYS---PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
S P + S S SP S + S + TS S +
Sbjct: 239 SSDCKSSPRARSSSAKSPFKSSIQRKATKALSKLSLRASP-KDTSKSSKSEVAPPKKSEA 297
Query: 1644 SYSPTSPSYSPTSPSYSPTSP 1664
+S ++ + S+
Sbjct: 298 KVPSSSKKWTDGNVSWDSLPS 318
|
This family consists of several hypothetical proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown. Length = 564 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 32/150 (21%), Positives = 45/150 (30%), Gaps = 15/150 (10%)
Query: 1492 PTSSPGYSPSSPGYSPSS-PGYSPTSP---GYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
PT+ P Y P Y PG P + G+ G+ P +P SP S +P
Sbjct: 140 PTARPAY----PAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASY-----APEQ 190
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
Y P Y Y P + + P P + P
Sbjct: 191 ERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDR-PEPPPGAGHVHRGGPGPPERD 249
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
A +P A P +P+ P P+
Sbjct: 250 DAPVVPIRPSAPGPLAAQP-APAPGPGEPT 278
|
Length = 617 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 0.001
Identities = 43/326 (13%), Positives = 98/326 (30%), Gaps = 31/326 (9%)
Query: 1481 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP-GYSPTSPGYSPTSPT 1539
F P V G P G P+ + + G S + G +
Sbjct: 358 FEPAVTGGGAPGGGVP---ARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKA 414
Query: 1540 YSPSSPGYSPTSPAYSPTSPSY-SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
+ ++ + PA + + P+ + S P+ S
Sbjct: 415 AAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADS 474
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
++ + + +P + PA + + T + + + + +P +
Sbjct: 475 GSASAPASDAPPDAAFEPA-PRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
Query: 1658 SYSPTSPAYSPTSPGYS-------------PTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
+P + A + + G + + + +P+ P+ A +
Sbjct: 534 PPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVA 593
Query: 1705 LAY-SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP-TYSPSSPYNAGGGNPD 1762
+ +P + + +P + + + ++ P + P Y P S GG D
Sbjct: 594 VQVPTPRARAATGDAPPNGAAR--AEQAAESRGAPPPWEDIPPDDYVPLSADEGFGGPDD 651
Query: 1763 -YSP---SSP---QYSPSAGYSPSAP 1781
+ P S P + +P +P+ P
Sbjct: 652 GFVPVFDSGPDDVRVAPKPADAPAPP 677
|
Length = 830 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 0.001
Identities = 23/196 (11%), Positives = 53/196 (27%), Gaps = 6/196 (3%)
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYS 1646
++ P P A + + S + T + + + +
Sbjct: 357 AFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA 416
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
+ + + P+ P + + + P + + S P
Sbjct: 417 AAAATRAEAPPAAPA--PPATADRGDDAADGDAPVP-AKANARASADSRCDERDAQPPAD 473
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
+S S A P + P + S + + +P + A P +P
Sbjct: 474 SGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP--APE 531
Query: 1767 SPQYSPSAGYSPSAPG 1782
+ +P+A + G
Sbjct: 532 ARPPTPAAAAPAARAG 547
|
Length = 830 |
| >gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 40/210 (19%), Positives = 54/210 (25%), Gaps = 31/210 (14%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS-----PGYSPTSPGYSPTSPTYSPSSPG 1546
+ SP P +S S P S P S G+ P + +P P
Sbjct: 247 HPHTTRPSPPRPAFSRSPSSPLSPLPRPSTRRGLLPNPRLPRASRGHLPPPTSSAPPRPN 306
Query: 1547 YSPTSPAY----SPTSPSYSP------------------TSPSYSPT--SPSYSPTSPSY 1582
P + P SP+ P S SP S P +
Sbjct: 307 GGLRRPLHLHSSRPNSPNLRPRRIRKNSLQQTRARLGHSKSLGQSPNLRSSQLPPPTKRR 366
Query: 1583 SPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
P P SP+ P + S + +S +
Sbjct: 367 LRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKHHRLPPSVLPGP 426
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
S SPS P +P PA PT
Sbjct: 427 RLSSPSPSPSLPTRRPG-TPPPPASPPTPS 455
|
Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P PT+ A SP P+ +P++ + + + P P +P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNP 1696
+P S + P Y P
Sbjct: 424 --TPESAPKLTRAAIPVDEKPKYTP 446
|
Length = 585 |
| >gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 30/166 (18%), Positives = 40/166 (24%), Gaps = 10/166 (6%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
+ +P TS P S G TS Y+ P P P +
Sbjct: 28 NFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRP---PRGPEQT 84
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
P P S P +P P + S + S SP Y P
Sbjct: 85 LDKPDSLPASR---ELPPGPTPVPPGGFRGASSPRLGADSTSP-RFLYQVNFPVILAPIG 140
Query: 1616 AYSPTSPAYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
+ +S S S S Y + S
Sbjct: 141 ESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRS 186
|
Length = 580 |
| >gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 32/184 (17%), Positives = 45/184 (24%), Gaps = 6/184 (3%)
Query: 1484 YVGGMAFSPTS-SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
G P + S SP S + +P TS P
Sbjct: 1 GPGKPRGQPGRWNYDSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRET 60
Query: 1543 SSPGYSPTSPAYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
S G TS Y+ P P + + P+ P +P P + S +
Sbjct: 61 GSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGAD 120
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPS 1658
S SP Y P + +S S S S Y
Sbjct: 121 STSP-RFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSK 179
Query: 1659 YSPT 1662
+
Sbjct: 180 HKTH 183
|
Length = 580 |
| >gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 30/137 (21%), Positives = 48/137 (35%)
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
S S TS S S S ++ A S +P SP S + + S +S
Sbjct: 2 AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
S + S S S SP+ + + G T+ + +SP+ S + S +
Sbjct: 62 FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121
Query: 1697 QSAKYSPSLAYSPSSPR 1713
S L++ R
Sbjct: 122 SSGNGPSVLSFMADVKR 138
|
Family of related proteins that is plant specific. Length = 313 |
| >gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 1639 SPTSPSYSPTSPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS-YNP 1696
T S + SP S TS P + +S SP+ S SP S +SP+S +P
Sbjct: 109 QFTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSR-SASP-SRKFSPSSTIQQSP 166
Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
Q + + S S S +S P N S S+ + + S
Sbjct: 167 QLTPSNKPASPSSSYQSPSYSSSLGP--VNSSGNRSNLRSSPWALRSSGDK 215
|
Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559 |
| >gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT 1730
P + P+ + + P+ + P++PR +P + SP +
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETT--PTP 224
Query: 1731 SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
S++ SP S + S T ++P + +P+ P +P G +P A S+
Sbjct: 225 STTTSPPSTTIPAPSTT--IAAPQAGTTPEAEGTPAPP--TPGGGEAPPANATPAPEASR 280
Query: 1791 YTPQTNR 1797
Y +
Sbjct: 281 YELTVTQ 287
|
Length = 401 |
| >gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498) | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 0.001
Identities = 60/268 (22%), Positives = 83/268 (30%), Gaps = 12/268 (4%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
+ P + SSP YS S P + G S + + SSP P +
Sbjct: 70 TRPSLAQSSPAYSSSYS--EINEPELGMPNGGRSLSLVDLQDAASGQVHSSPMGLPGALG 127
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
S +S S S + + P +PT P S +P Y
Sbjct: 128 LRRASVPWSARSGQ-SSIAGGLRLSQPQSAPTVRLLHAAPAQPQLLQP-LSFQNPVYHMA 185
Query: 1614 SPAYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPAYSPTS 1670
+P P SP S + S +S S S + S S T S T S
Sbjct: 186 AP--LPVSPRGDSGSENHSSASSHSNSEDCSLSAGFSNSGGEEFTRRSTDFTRRQLSLPD 243
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPS---YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
+ P P + P PS + PSL S S +S + +
Sbjct: 244 RQHQPALPRQNSAGPQRRVDQPSPPGGGSHRGRIPPSLLSSLPSEGSMLSSEWPQSGARP 303
Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
SSS SP P++ SP N
Sbjct: 304 RQQSSSSKGDSPELRPAAGHLQQPSPVN 331
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with pfam00616, pfam00168. This domain has two conserved sequence motifs: DLQ and PLSFQNP. Length = 489 |
| >gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
+ T G + P YS + T+ P
Sbjct: 358 RVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPAR-SPMTAYPPVPQFCGDPGLV 416
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
Y+P SP S P P PT+P P S
Sbjct: 417 SPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
|
Length = 663 |
| >gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
S T+P+ + A T + P YS + S T+ P
Sbjct: 352 SLTAPS-RVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARS-PMTAYPPVPQF 409
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
Y+P SP S P P PT+P P S
Sbjct: 410 CGDPGLVSPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
|
Length = 663 |
| >gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 38/200 (19%), Positives = 52/200 (26%), Gaps = 38/200 (19%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGY-SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
P + + ++ G S + P S S G +P + + S
Sbjct: 6 VPCAKTAAAAANVGSRLSRSSFRLQPKPNISFPSKGPNPKRSAVPKVKAQLNEVAVDGSS 65
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS------------------ 1590
S +P+ P P S S S + P S +
Sbjct: 66 NSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDIVELQ 125
Query: 1591 ----------------PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
P P +P P A P SP PA S + S PT
Sbjct: 126 LKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASPP--AAQPAPSAPASSPPPT 183
Query: 1635 SPSYSPTSPSYSPTSPSYSP 1654
S P S P SP
Sbjct: 184 PASPPPAKAPKSSHPPLKSP 203
|
Length = 274 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 0.002
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 17/191 (8%)
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
P +P Y + + P + +P P P P +P P +P+
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534
Query: 1700 KYSPSLAYSPS------SPRLSPASPYSPTSPNYSPTSSSYSP-------TSPSYSPSSP 1746
+ L S P L PA+P P +P+ S +P TS + P +P
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAP--PAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP 2592
Query: 1747 TYS--PSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKD 1804
S P +P + G +P SP + P P SP++ +
Sbjct: 2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
Query: 1805 DKNTKGDKSSR 1815
+ + SR
Sbjct: 2653 RDDPAPGRVSR 2663
|
Length = 3151 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 43/188 (22%), Positives = 69/188 (36%), Gaps = 12/188 (6%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
T+ T S ++ P S +P P + + + + +S T
Sbjct: 169 KTAVTTSKTTS-----WPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQG 223
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
+ + ++P T P S P+ SP P S TS S T T +P + S +
Sbjct: 224 TTTSSNPE-PQTEPPPSQRGPSGSPQHPP-STTSQDQSTTGDGQEHTQRRKTPPATS-NR 280
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS-PTSPSYNPQSAKYSPSLAYSPSSPR 1713
SP + T P PT+ P+ PT+ T S + P +P + +P+
Sbjct: 281 RSPHSTATPP---PTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKE 337
Query: 1714 LSPASPYS 1721
L P P S
Sbjct: 338 LDPPKPNS 345
|
Length = 408 |
| >gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 8/163 (4%)
Query: 1528 PTSPGYSPTS--PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
T+ S T+ PT S +P P + + + + +S T + + +
Sbjct: 169 KTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSS 228
Query: 1586 SP---SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
+P + P S SP + P++ + ++ T P+ S +S +
Sbjct: 229 NPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTAT 288
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY-SPTSPSYSPTS 1684
P PT+ P+ PT+ S +SP + SP +PT+
Sbjct: 289 P--PPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329
|
Length = 408 |
| >gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 15/131 (11%)
Query: 1443 GMTPA-RSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
G TPA + S TP G +PG + G + + +P+
Sbjct: 2 GRTPAWGASGSKTPAW-GSRTPGT--------AAGGAPTARGGSGSRTPAWGGAGSRTPA 52
Query: 1502 SPG---YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
G +P + S + S + Y +PGY T AY P +
Sbjct: 53 WGGAGPTGSRTPAWGGASAWGN--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPAT 110
Query: 1559 PSYSPTSPSYS 1569
P + S S
Sbjct: 111 PGGGAMAGSAS 121
|
The C-terminal domain of the transcription elongation factor protein Spt5 is necessary for binding to Spt4 to form the functional complex that regulates early transcription elongation by RNA polymerase II. The complex may be involved in pre-mRNA processing through its association with mRNA capping enzymes. This CTD domain carries a regular nonapeptide repeat that can be present in up to 18 copies, as in S. pombe. The repeat has a characteristic TPA motif. Length = 121 |
| >gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 29/132 (21%)
Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSP-TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
PA+ +PG + PT+ S +P++ ++ +P A P
Sbjct: 15 PAWGSRTPGTAAGGA---PTARGGSGSRTPAWGGAGSR----------TPAWGGAGPTGS 61
Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG 1782
+P + S+ + +S S SS P Y A +P G +PSA G
Sbjct: 62 RTPAWGGASAWGNKSSEG-SASSWAAGPGGAYGAP-------------TPGYGGTPSAYG 107
Query: 1783 Y-SPSSTSQYTP 1793
+P +
Sbjct: 108 PATPGGGAMAGS 119
|
The C-terminal domain of the transcription elongation factor protein Spt5 is necessary for binding to Spt4 to form the functional complex that regulates early transcription elongation by RNA polymerase II. The complex may be involved in pre-mRNA processing through its association with mRNA capping enzymes. This CTD domain carries a regular nonapeptide repeat that can be present in up to 18 copies, as in S. pombe. The repeat has a characteristic TPA motif. Length = 121 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 0.002
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
Y P + +P S + +PT S + ++ ++S SP+ P SP +
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIV 615
Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
SPS SP P+ SPS +P+SP S + SP S
Sbjct: 616 SPSTSP--PASHLGSPSTTPSSPESSIKVASTETASPESS 653
|
Length = 670 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 0.002
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
Y P + +P S + +PT A + ++ +S SP+ +PS SP P+ SP +P+
Sbjct: 557 YIPGLFAGNPGSTNSTPTGSA-ASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
TSP P S SP++ SP S ++ T SP S
Sbjct: 613 KIVSPSTSP---PASHLGSPSTTPSSPESSIKVASTETASPES 652
|
Length = 670 |
| >gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 32/153 (20%), Positives = 45/153 (29%), Gaps = 4/153 (2%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
S PT S ++ S A P+ TS S S S S +
Sbjct: 262 SLDPTETSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFD 321
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
+ S +SP+S T PS SP SPS+ A +
Sbjct: 322 KAASSGTKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTT----GSGKGEP 377
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
+ S S + P + S S+P
Sbjct: 378 ASESTPSTSPPPPGLADDIVRAIFATSSRSAPR 410
|
This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.002
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1654
P PT+ A SP P +P++ + + + P P + +P P +P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
T S + A P P Y+P +P
Sbjct: 424 TPESAPKLTRAAIP-----VDEKPKYTPPAPP 450
|
Length = 585 |
| >gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 33/220 (15%), Positives = 51/220 (23%), Gaps = 10/220 (4%)
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
S SP S + +P + TS P S TS Y+
Sbjct: 15 DSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTV 74
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
P P P + P P S P P+ P S +
Sbjct: 75 PRP---PRGPEQTLDKPDSLPASRELPP-GPTPVPPGGFRGASSPRLGADSTSPRFLYQV 130
Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS------PYNAGGGNPDYSPSSPQYSPSAG 1775
+P S S + + P S + + S +G
Sbjct: 131 NFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSG 190
Query: 1776 YSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+ A S Q + K+ + +
Sbjct: 191 LTKKAARKRKGSFVFKPSQLKELSGSLKNLLHLDDSAETD 230
|
Length = 580 |
| >gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 15/143 (10%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
A S +S +S S S S + S +S +P P+S P+
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSS---PARNTS 57
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
S +S S PS S S S SPS + + S + + TS
Sbjct: 58 SSSSFGLSKQRPSSLSRGRLSSR--------FVSPSRGSPSAAASLNG----SLATASTS 105
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPS 1630
+ SP+ + +S S PS
Sbjct: 106 GSSSPSRSRRTTSSDLSSGNGPS 128
|
Family of related proteins that is plant specific. Length = 313 |
| >gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
S S + S S S +S +P+ P+S TS S S S S
Sbjct: 12 GDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS-SSSSFGLSKQRPS 70
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
S + SP++ A S A + TS + SP+ + +S S PS
Sbjct: 71 SLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSGNGPS 128
|
Family of related proteins that is plant specific. Length = 313 |
| >gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (98), Expect = 0.002
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
G SP +P SP +P P +P++P + T PA +P P P+ +PT P
Sbjct: 78 GQSPLAP--SPACAAPAPACPACAPAAPAPAVTCPAPAPACP------PATAPTCPP-PA 128
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
P+ + +P+ P++ P P +P +PA P P Y S T+P
Sbjct: 129 VCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAP 188
Query: 1637 SYSPTSPSYSP 1647
+ SP P
Sbjct: 189 AASPVLEPRIP 199
|
Length = 280 |
| >gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (97), Expect = 0.002
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
SP +PS P + +P P+ +P +P+ + T P+ +P P + + PA + +
Sbjct: 80 SPLAPS--PACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPA 137
Query: 1622 PAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
PA P++ P P +P +P+ P P Y S T+P SP
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPR 197
Query: 1681 SP 1682
P
Sbjct: 198 IP 199
|
Length = 280 |
| >gnl|CDD|221625 pfam12533, Neuro_bHLH, Neuronal helix-loop-helix transcription factor | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 1507 PSSPGYSPTSPGYSPTSPGYSPTSPGY-SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
P S + Y SPG SP + S S + S P Y S
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHS 97
Query: 1566 PSYSPTSPSY-SPTSPSYSPTS 1586
P SP Y P SP S
Sbjct: 98 PDC--GSPPYDGPLSPPLSING 117
|
This domain family is found in eukaryotes, and is approximately 80 amino acids in length. The family is found C-terminal to pfam00010. There is a single completely conserved residue W that may be functionally important. Neuronal basic helix-loop-helix (bHLH) transcription factors such as neuroD and neurogenin have been shown to play important roles in neuronal development. Length = 120 |
| >gnl|CDD|221625 pfam12533, Neuro_bHLH, Neuronal helix-loop-helix transcription factor | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
P S S + Y SP SP S S + + S P Y S
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHS 97
Query: 1608 PAYSPTSPAY-SPTSPAYSPTS 1628
P SP Y P SP S
Sbjct: 98 PDC--GSPPYDGPLSPPLSING 117
|
This domain family is found in eukaryotes, and is approximately 80 amino acids in length. The family is found C-terminal to pfam00010. There is a single completely conserved residue W that may be functionally important. Neuronal basic helix-loop-helix (bHLH) transcription factors such as neuroD and neurogenin have been shown to play important roles in neuronal development. Length = 120 |
| >gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS---PAYSPTSPAYSPTSPAYSPTSP 1629
P+ + + P+ ++P P PA +P + SP +PT
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPA-TPRPTPRTTASPETTPTPS 225
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
+ TSP S T P+ S T + + + +PA P +PG P+ + +P S
Sbjct: 226 T--TTSPP-STTIPAPSTTIAAPQAGTTPEAEGTPA--PPTPGGGEAPPANATPAPEAS 279
|
Length = 401 |
| >gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 49/251 (19%), Positives = 75/251 (29%), Gaps = 36/251 (14%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPT-SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
+ N L P+ A F G +A P P S+P P + P +P
Sbjct: 153 ATNASLFPLGLAAFPAE-GTLAAPPLGEGSADGSCDPALPLSAPRLGPADV-FVPATPRP 210
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPT 1585
+P + T+PT S ++ S T PA S T + + + +P+ +P P
Sbjct: 211 TPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPA 270
Query: 1586 SPSYSPTSPSYSPTSPS------------------------------YSPTSPAYSPTSP 1615
+ + +P + Y T + Y P SP
Sbjct: 271 NATPAPEASRYELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPARIYRPPSP 330
Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
S + P SP S S + PS + S +
Sbjct: 331 VAPSISAVNEAALARLGDELKRHPPESPRRSKRRSSQTMV-PSLTAISEESEAPAVVELS 389
Query: 1676 TSPSYSPTSPT 1686
SP P PT
Sbjct: 390 RSPR-RPGGPT 399
|
Length = 401 |
| >gnl|CDD|227928 COG5641, GAT1, GATA Zn-finger-containing transcription factor [Transcription] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.002
Identities = 58/306 (18%), Positives = 90/306 (29%), Gaps = 44/306 (14%)
Query: 1542 PSSPGYSPT---SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPS 1595
PS P + + SP + + +S S +S S P S S S SPS + T S
Sbjct: 67 PSLPSGNASISGSPRFVNRIQEHRASSRQSSISSLSDFPISSSSSTSNAASPSTNYTDES 126
Query: 1596 YSPTSPSYSPTSPAYSPTSPAYS----PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
S + +P TS + + TS + S S +
Sbjct: 127 NQQFSSYNTTLNP--GGTSSLNPNNNQSDNSNQPHVCSNCKTTSTPLWRRASSESSLPGN 184
Query: 1652 Y----------SPTSPSYSPTSPAYSPTSPGY--------SPTSPSYSPTSPTYSPTSPS 1693
SP + + S S S + + + S + +
Sbjct: 185 NLCNACGLYLKLHGSPRAPISLKSDSIKSRSSRSSHNNNDSNGENANTESIGNSSASKLT 244
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP----NYSPTSSSYSPTSPSYSPSSPTYS 1749
+ + L S LSP S +P SP TS T PS S
Sbjct: 245 KSWEERPQGRQLLSDAGS--LSPRSN-NPKSPLLEGLMGSTSLQPVSTPKLVLPSDKKRS 301
Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTK 1809
+P + S + +S +A G + P + D +K T
Sbjct: 302 TL-------TTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSKRSNATC 354
Query: 1810 GDKSSR 1815
+ SS
Sbjct: 355 MNCSST 360
|
Length = 498 |
| >gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 63/322 (19%), Positives = 87/322 (27%), Gaps = 41/322 (12%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
+ P G PG + +PV A P V S + PG
Sbjct: 461 SMAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPVP-APAGPIVRPWEASLSQVPGV 519
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
+ + P P P P PT P P + + G + P
Sbjct: 520 AFA-----PVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVRERWRP-- 572
Query: 1559 PSYSPTSP-SYSPTS---------PSYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYS- 1604
++P P S S S P S P SP P P P
Sbjct: 573 APWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQM 632
Query: 1605 -PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSP 1661
P SP + PA P P +P +P + P P P+ P
Sbjct: 633 FPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGP--VPPVPATQP 690
Query: 1662 T---SPAYSPTSPGYS-----PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP- 1712
P P + G S P P P P + QS + + + P
Sbjct: 691 QYFDIPLTEPINQGASAAHFLPQQPMEGPLVPERWMFQGATLSQSVRPGVAQSQYFDLPL 750
Query: 1713 -----RLSPASPYSPTSPNYSP 1729
+PA+ + P P
Sbjct: 751 TQPINHGAPAAHFLHQPPMEGP 772
|
Length = 935 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.003
Identities = 36/215 (16%), Positives = 52/215 (24%), Gaps = 24/215 (11%)
Query: 1432 QLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFS 1491
Q Y + P + PV + + P +P AQ Y
Sbjct: 382 QQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP 441
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
+ + Y P + P P P P T
Sbjct: 442 VAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEP-EPVVEETK 500
Query: 1552 PAYSPT-----------------SPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
PA P + Y P P P P S S + P
Sbjct: 501 PARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPE-----PIKSSLKAPSVAAVPPV 555
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
+ + SP S A T A + +P +S +
Sbjct: 556 EAAAAVSPLASGVKKATLATGAAATVAAPVFSLAN 590
|
Length = 1355 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.003
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
Y P + +P S + +PT A + ++ +S SPS +P+ SP P+ + S +PS
Sbjct: 557 YIPGLFAGNPGSTNSTPTGSA-ASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS 1752
SPS+ P S SP+++ SP S S+ T SP S
Sbjct: 613 KIVSPSTS--------PPASHLGSPSTTPSSPESSIKVASTETASPES 652
|
Length = 670 |
| >gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.003
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
Y P + +P S + +PT S + ++ +S SP+ P SP +
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIV 615
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
SPS SP P+ SPS +P+SP S SP S
Sbjct: 616 SPSTSP--PASHLGSPSTTPSSPESSIKVASTETASPESS 653
|
Length = 670 |
| >gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.003
Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 37/213 (17%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
T S + SP PA ++P + +S S SP+ S S S
Sbjct: 109 QFTVVSQAKKSP------PASKTSTPMNTSEPLVPGHSSFSDSPSR------SAS---PS 153
Query: 1650 PSYSPTSPS-YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
+SP+S SP + + S + S S +S S S N + + SP S
Sbjct: 154 RKFSPSSTIQQSPQLTPSNKPA-SPSSSYQSPSYSSSLGPVNS-SGNRSNLRSSPWALRS 211
Query: 1709 PSSPR------------LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
+ L+ + + +++ T S+ SSP++ +N
Sbjct: 212 SGDKKDITTDEKYLETFLAEVDEEQHMITSSAGKNATPPETINSFGSSSPSF-----WNY 266
Query: 1757 GGGNPDYSPSSP--QYSPSAGYSPSAPGYSPSS 1787
D + S Y S PS S S
Sbjct: 267 SRNASDAARSLKKRSYQLSPSPVPSKQKASTSP 299
|
Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins. Length = 559 |
| >gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 42/227 (18%), Positives = 66/227 (29%), Gaps = 33/227 (14%)
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
PA + + P+ ++P P T T+ S T +
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPST 226
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTS 1670
TSP S T PA S T + + + +P+ +P P + + +P + Y T
Sbjct: 227 TTSPP-STTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRYELTV 285
Query: 1671 PGYSPTSPSYS-----------------------PTSPTYSPTSPSYNPQSAKYSPSLA- 1706
+ S + Y P SP SA +LA
Sbjct: 286 TQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPARIYRPPSPVAPSISAVNEAALAR 345
Query: 1707 -------YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
+ P SPR S P+ + S + SP
Sbjct: 346 LGDELKRHPPESPRRSKRRSSQTMVPSLTAISEESEAPAVVELSRSP 392
|
Length = 401 |
| >gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+ A + T + P YS + S T+ P
Sbjct: 358 RVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARS-PMTAYPPVPQFCGDPGLV 416
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
Y+P SP S P P PT+P P S
Sbjct: 417 SPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
|
Length = 663 |
| >gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (99), Expect = 0.003
Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 26/202 (12%)
Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-----P 1584
S G S +S + S SS SP+S +PS SP SP+ P +P S S
Sbjct: 1812 SAGRSSSSSSSSSSSSSSSPSSRPSRSATPSLSP-----SPSPPRRAPVDRSRSGRRRER 1866
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP--TSPSYSPTSPSYSPTS 1642
PS +P ++P S + SP T+P +P + P P ++P+S + T
Sbjct: 1867 DRPSANPF--RWAPRQRSRADHSP--DGTAPGDAPLNLEDGPGRGRPIWTPSSAT---TL 1919
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
PS S S T S +P+ S S P YS NP+ K
Sbjct: 1920 PSRSGPEDSVDETETEDSAPPARLAPSPLETSRAEDSEDSEYPEYS------NPRLGKSP 1973
Query: 1703 PSLAYSPSSPRLSPASPYSPTS 1724
P+L S + R S P P+S
Sbjct: 1974 PALK-SREARRPSSKQPRRPSS 1994
|
Length = 2033 |
| >gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.004
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 1316 IEAVRRALLDELRVVISFD-----GSYVNYRHLAILCDTMTYRGH--------LMAITRH 1362
IE + R +L ++ V D G VN + + G L+ IT+
Sbjct: 1126 IEVIARQMLRKVAVTNPGDSDYLPGRQVNRYEFEDTANNLILEGKQPPVGQPLLLGITKA 1185
Query: 1363 GINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
+ + + SF+ET +L DAA+ + D+L G+ EN+++G+ P GTG
Sbjct: 1186 SLATDSW--LSAASFQETTKVLTDAAIEGKVDHLAGLKENVIIGKPIPAGTG 1235
|
Length = 1460 |
| >gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.004
Identities = 50/271 (18%), Positives = 79/271 (29%), Gaps = 20/271 (7%)
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
S +S PS S+ S + +PS + + + + P+S S S A
Sbjct: 25 SKRWSAQLPSGLSRGNSFLSNRNSDA--APSGTDSLSGRPASRLNREPSSRPGSSHSEAT 82
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT- 1669
P PS P+ P S S S S P+ S T
Sbjct: 83 IVRQAKEGERPATPPEARPDEGFVRPSL-PSHPRSRSASVSNSKDGDRPSDLPPSPSKTM 141
Query: 1670 -SPGYSPTSPSY------SPTSPTYSPTSPSYNPQSAKYSPSLAYS--------PSSPRL 1714
+SPT ++ P SP + P P P+ K L S +S +
Sbjct: 142 DPRRWSPTKATWLESALNKPESPKHKPQ-PPQQPEWKKDLSRLRQSRASVDLGRTNSFKE 200
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
T P S + S P S + + + S P
Sbjct: 201 VTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRE 260
Query: 1775 GYSPSAPGYSPSSTSQYTPQTNRDDSTTKDD 1805
P +P +P + + + S + +
Sbjct: 261 TLDPKSPEKAPPIDTTEEELKSPEASPKESE 291
|
This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414 |
| >gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4 | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 1580 PSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
P++ +P + + S S +P +PA+ P S T P++ S
Sbjct: 15 PAWGSRTPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGSRT-PAWGGASAWG 73
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
+ S S + +Y +P Y T Y P +P + + S
Sbjct: 74 N--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
|
The C-terminal domain of the transcription elongation factor protein Spt5 is necessary for binding to Spt4 to form the functional complex that regulates early transcription elongation by RNA polymerase II. The complex may be involved in pre-mRNA processing through its association with mRNA capping enzymes. This CTD domain carries a regular nonapeptide repeat that can be present in up to 18 copies, as in S. pombe. The repeat has a characteristic TPA motif. Length = 121 |
| >gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.004
Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 10/202 (4%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
SP S+ + + S TS S +SP S + S + S T
Sbjct: 79 SPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNP---SSTQSRKDSGP 135
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
SP +P PS S T ++ P + + S + +P + S S S +
Sbjct: 136 GDGSPVQKRKNPLLPS-SSTHGTHPPIVFTDNNGSHAGAPNARS---RKEIPSLGSQSMQ 191
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
SP + S ++ P+ S S + P+ P +S T+ S G S S
Sbjct: 192 LPSPHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFP-HSSTAVLLKRHS-GSSGASL 249
Query: 1679 SYSPTSPTYSPTSPSYNPQSAK 1700
S +P+ S S + + S +
Sbjct: 250 ISSNITPSSS-NSEAMSTSSKR 270
|
Length = 1175 |
| >gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.004
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
+ S S + + SP S S S S+ TS S P + + PS SP S +S
Sbjct: 3 ASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSF 62
Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPAYSPTSPG 1672
S P+ S S S SPS + + + + TS S SP+ + +S
Sbjct: 63 GLSKQRPSSLSRGRLSSR-FVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121
Query: 1673 YSPTSPS 1679
S PS
Sbjct: 122 SSGNGPS 128
|
Family of related proteins that is plant specific. Length = 313 |
| >gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.004
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 7/132 (5%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
S SS S S S + S + + S SS +PA P+S TS
Sbjct: 4 SVSSGSTS------GDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS 57
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
S S S S S + SP++ + S A + TS + SP+ +
Sbjct: 58 -SSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRT 116
Query: 1626 PTSPSYSPTSPS 1637
+S S PS
Sbjct: 117 TSSDLSSGNGPS 128
|
Family of related proteins that is plant specific. Length = 313 |
| >gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (95), Expect = 0.004
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
SP +PS P + +P P+ +P +PA + T P +P P P +PT P
Sbjct: 80 SPLAPS--PACAAPAPACPACAPAAPAPAVTCPAPAPACP------PATAPTCPPPAVCP 131
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
A P+ A PS+ + PA P P + P P P S + A
Sbjct: 132 APARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLP--PPDYPAASCPTIETAPA 189
Query: 1759 GNPDYSPSSP 1768
+P P P
Sbjct: 190 ASPVLEPRIP 199
|
Length = 280 |
| >gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 34/141 (24%), Positives = 41/141 (29%), Gaps = 29/141 (20%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGY----SPTSPGYSPTSPGYSPTSPTYSPS--S 1544
G P GY G G P PG+ + P S S
Sbjct: 180 CGGVRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSSFPPPYGPGAGPSSGYGS 239
Query: 1545 PGYSPTSPAYSP------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
G + P + S SY SPSYSP+S S S +S
Sbjct: 240 GGTRSGQGGWGPGFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSS 299
Query: 1587 PSYSPTSPSYSPTSPSYSPTS 1607
S S T TS + TS
Sbjct: 300 SSSSSTR-----TSSGFGGTS 315
|
This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown. Length = 317 |
| >gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.004
Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 11/111 (9%)
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
+ S T+PS + + A P P YS + S
Sbjct: 350 TASLTAPS-RVLAAAAKVAVIA--APQTHTGPA-----DRQRPQRPDGIPYSVPARS-PM 400
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
T+ P Y+P SPG S P P PT+P P S
Sbjct: 401 TAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQ--PTNPYVMPIS 449
|
Length = 663 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.004
Identities = 17/119 (14%), Positives = 43/119 (36%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
+ + + + +PS + +P+ +P + +P + + + + P +P
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
+ +PS P + P+ +P + +P+ +P +PA G
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
|
Length = 824 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1815 | |||
| KOG0260 | 1605 | consensus RNA polymerase II, large subunit [Transc | 100.0 | |
| PRK14977 | 1321 | bifunctional DNA-directed RNA polymerase A'/A'' su | 100.0 | |
| KOG0261 | 1386 | consensus RNA polymerase III, large subunit [Trans | 100.0 | |
| KOG0262 | 1640 | consensus RNA polymerase I, large subunit [Transcr | 100.0 | |
| TIGR02390 | 868 | RNA_pol_rpoA1 DNA-directed RNA polymerase subunit | 100.0 | |
| PRK08566 | 882 | DNA-directed RNA polymerase subunit A'; Validated | 100.0 | |
| TIGR02386 | 1140 | rpoC_TIGR DNA-directed RNA polymerase, beta' subun | 100.0 | |
| PRK00566 | 1156 | DNA-directed RNA polymerase subunit beta'; Provisi | 100.0 | |
| PRK14906 | 1460 | DNA-directed RNA polymerase subunit beta'/alpha do | 100.0 | |
| PRK09603 | 2890 | bifunctional DNA-directed RNA polymerase subunit b | 100.0 | |
| PRK14844 | 2836 | bifunctional DNA-directed RNA polymerase subunit b | 100.0 | |
| COG0086 | 808 | RpoC DNA-directed RNA polymerase, beta' subunit/16 | 100.0 | |
| PRK02625 | 627 | rpoC1 DNA-directed RNA polymerase subunit gamma; P | 100.0 | |
| TIGR02387 | 619 | rpoC1_cyan DNA-directed RNA polymerase, gamma subu | 100.0 | |
| CHL00018 | 663 | rpoC1 RNA polymerase beta' subunit | 100.0 | |
| cd02584 | 410 | RNAP_II_Rpb1_C Largest subunit (Rpb1) of Eukaryoti | 100.0 | |
| smart00663 | 295 | RPOLA_N RNA polymerase I subunit A N-terminus. | 100.0 | |
| TIGR02389 | 367 | RNA_pol_rpoA2 DNA-directed RNA polymerase, subunit | 100.0 | |
| cd06528 | 363 | RNAP_A'' A'' subunit of Archaeal RNA Polymerase (R | 100.0 | |
| PRK14897 | 509 | unknown domain/DNA-directed RNA polymerase subunit | 100.0 | |
| PRK04309 | 383 | DNA-directed RNA polymerase subunit A''; Validated | 100.0 | |
| cd02736 | 300 | RNAP_III_Rpc1_C Largest subunit (Rpc1) of Eukaryot | 100.0 | |
| cd02735 | 309 | RNAP_I_Rpa1_C Largest subunit (Rpa1) of Eukaryotic | 100.0 | |
| PRK02597 | 1331 | rpoC2 DNA-directed RNA polymerase subunit beta'; P | 100.0 | |
| TIGR02388 | 1227 | rpoC2_cyan DNA-directed RNA polymerase, beta'' sub | 100.0 | |
| cd02737 | 381 | RNAP_IV_NRPD1_C Largest subunit (NRPD1) of Higher | 100.0 | |
| CHL00117 | 1364 | rpoC2 RNA polymerase beta'' subunit; Reviewed | 100.0 | |
| PF04998 | 277 | RNA_pol_Rpb1_5: RNA polymerase Rpb1, domain 5; Int | 100.0 | |
| PF04997 | 337 | RNA_pol_Rpb1_1: RNA polymerase Rpb1, domain 1; Int | 100.0 | |
| PRK14898 | 858 | DNA-directed RNA polymerase subunit A''; Provision | 100.0 | |
| PF00623 | 166 | RNA_pol_Rpb1_2: RNA polymerase Rpb1, domain 2; Int | 100.0 | |
| cd00630 | 158 | RNAP_largest_subunit_C Largest subunit of RNA poly | 100.0 | |
| cd02655 | 204 | RNAP_beta'_C Largest subunit (beta') of Bacterial | 100.0 | |
| KOG0260 | 1605 | consensus RNA polymerase II, large subunit [Transc | 100.0 | |
| PF04992 | 187 | RNA_pol_Rpb1_6: RNA polymerase Rpb1, domain 6; Int | 99.97 | |
| PF04983 | 158 | RNA_pol_Rpb1_3: RNA polymerase Rpb1, domain 3; Int | 99.97 | |
| PF05000 | 108 | RNA_pol_Rpb1_4: RNA polymerase Rpb1, domain 4; Int | 99.87 | |
| PF04990 | 135 | RNA_pol_Rpb1_7: RNA polymerase Rpb1, domain 7; Int | 99.87 | |
| COG0086 | 808 | RpoC DNA-directed RNA polymerase, beta' subunit/16 | 99.8 | |
| PRK14898 | 858 | DNA-directed RNA polymerase subunit A''; Provision | 98.97 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 98.52 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 98.41 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.28 | |
| KOG1999 | 1024 | consensus RNA polymerase II transcription elongati | 93.07 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 91.55 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 91.24 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 91.13 | |
| KOG1999 | 1024 | consensus RNA polymerase II transcription elongati | 84.94 |
| >KOG0260 consensus RNA polymerase II, large subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=3711.94 Aligned_cols=1386 Identities=65% Similarity=1.042 Sum_probs=1342.0
Q ss_pred CCCCCCCCcccccccceEEEEcCCHHHHHhcceeEEeeCccccCCCCCCCCCCCCCCCCcCCCccccccccCCCCcCCcc
Q 000235 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80 (1815)
Q Consensus 1 ~~~~~~~s~~~~~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~~p~~gGl~D~rlG~~~~~~~C~TCg~~~~~CpGHf 80 (1815)
|+..+.++++|+++|++|||||+|||||++|||.||..+|+++.++|+.|||.|||||++|++.+|+|||.++.+|||||
T Consensus 1 m~~~~~~~~~pl~~v~~vqFgi~spdeir~mSV~~i~~~e~~e~~~pk~ggl~D~RlG~idr~~~CqTC~g~~~~CpGHF 80 (1605)
T KOG0260|consen 1 MGDDCEFSQAPLRTVKSVQFGILSPDEIRRMSVAEIEFPETMEGGRPKLGGLMDPRLGTIDRDSLCQTCGGNMFECPGHF 80 (1605)
T ss_pred CCCCcccccCcceeeeEEEeeccChhhhhcceeEEeecccccccCCCCcCCccccccCCCCccchhhhhccccccCCccc
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccccchhhhhHHHHHhcccceecceeccCCchHHHHHHHHhcC-hHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 000235 81 GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN-PKNRLKKILDACKNKTKCEGGDEIDVPGQD 159 (1815)
Q Consensus 81 GhIeL~~PV~h~~f~~~v~~iL~~vC~~C~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~C~~~~~~~~~~~~ 159 (1815)
||||||+|||||+|+++|++||+|||++|+++++++..+++.+.++.+. +++|+..+|..|+++..|+.+.+.+
T Consensus 81 GhieLAkPvfH~gFl~kv~kiL~cVC~~C~ki~~~~~~~~~~~~~~~~~~~k~rl~~v~~vck~k~~ce~g~~~e----- 155 (1605)
T KOG0260|consen 81 GHIELAKPVFHPGFLKKVKKILRCVCFYCSKILKDKFNPKEDQILRKRYCSKGRLLMVLDVCKGKVVCEGGIDVE----- 155 (1605)
T ss_pred ceeeeccccccHHHHHHHHHHHHHhhhcchheeecccCcchhhhhhhhcCCcchHHHHHHhhccceeeecccccc-----
Confidence 9999999999999999999999999999999999998888777777665 8999999999999999998632211
Q ss_pred CCcccccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHHhhcChhhHHHhcCCCCCC
Q 000235 160 GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239 (1815)
Q Consensus 160 ~~~~~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~~~~~~~ 239 (1815)
...++|||..||.|++.|++++.+|+....+ .. ..++.|++++|++||++|.++|+..|||+++++
T Consensus 156 -----~~g~sgcg~kqP~i~r~gl~l~a~~k~~~e~----~~-----e~k~~ls~e~V~~i~k~Isded~~~lg~~~~~a 221 (1605)
T KOG0260|consen 156 -----SDGRSGCGLKQPSIRRLGLDLWAFWKQGDED----SQ-----ESKRKLSAERVLEIFKRISDEDIDQLGFKPKIA 221 (1605)
T ss_pred -----ccccccccccCCceeccCchhhhhhhccCcc----CC-----cccccCcHHHHHHHHHhhchhhhhhhcCCCCcC
Confidence 1267999999999999999999999872111 11 147789999999999999999999999999999
Q ss_pred CccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHhhccCCCC
Q 000235 240 RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309 (1815)
Q Consensus 240 ~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~LQ~~V~~~~dn~~~ 309 (1815)
||||||||+|||||+.+||+ ||||++|.+|||.|..|++.+++|++.|++.++.++||+||++|+||+++
T Consensus 222 rpewmIlTvLPVPP~~vrP~iv~~~s~rg~DdlthkLadIiK~n~~l~r~e~~ga~~H~i~e~~~LlqfhVat~~Dn~~p 301 (1605)
T KOG0260|consen 222 RPEWMILTVLPVPPPAVRPEIVMQGSARGEDDLTHKLADIIKKNIGLKRNEENGAPAHIIEEYEQLLQFHVATYVDNDIP 301 (1605)
T ss_pred CCceeEEEEecCCCCcccceeeecccccCcchhHHHHHHHHHHHHHHhhhhhcCCchhhHHHHHhHhhhhhhheeccccc
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccchhHHHHHH
Q 000235 310 GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLK 389 (1815)
Q Consensus 310 ~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~~Ni~~l~ 389 (1815)
|+|++.||+|||+|+|++||||||||+|+|||||||||||||||+|||||+|||||||++||++|||||+||+|||++|+
T Consensus 302 gqp~a~qksGrplkSi~arlKgkegriRgnLmGKRvDFSaRTVItgDPnl~ldevGVP~sIAk~lTfpE~Vtp~NidrLq 381 (1605)
T KOG0260|consen 302 GQPQADQKSGRPLKSISARLKGKEGRIRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKRLTFPEHVTPFNIDRLQ 381 (1605)
T ss_pred CCcccccccCCcccchhhhhccccchhhhcccccccCcceeeeecCCCCcchhcccCcHHHHhhccCcceeccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCcccccEEEeCCCceeeccccccccccccccccEeeeecccCCeEEEecCCccccccccceeEEeecCC
Q 000235 390 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469 (1815)
Q Consensus 390 ~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk~Simah~vkv~~~~ 469 (1815)
+||++|++.||| ||||+|++|.|++|+|.++.++++|+.||+|||||+|||+|||||||||||||||||||||||++
T Consensus 382 eLV~~g~~~~pg---akyiird~G~Ridlr~~~~~~d~~Lq~G~kVeRhl~DGD~VlfNRqPSlHKmSmmahrVrVlp~s 458 (1605)
T KOG0260|consen 382 ELVRRGLLEHPG---AKYIIRDNGDRIDLRYHKRAGDIHLQPGYKVERHLMDGDVVLFNRQPSLHKMSMMAHRVRVLPYS 458 (1605)
T ss_pred HHhhCCCCCCCC---cceeeecCCcEEEEeecCCccccccccccEEEEeeccCCEEEEcCCCcHHHhhhhhcEEEEccCc
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccccccccceecccCCCccCHHHH
Q 000235 470 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549 (1815)
Q Consensus 470 t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l~g~~~lT~~d~f~~~~~~ 549 (1815)
|||||++||+||||||||||||+|||||++||||+.+|+++++|||+||+|+|+||++||+|+|+++||.||+||+|+++
T Consensus 459 TfrLNlsvtsPynADFDGDemnlhvPQS~etkAEl~EL~~vpkQiispQsnkpvmgivQDTLta~R~~t~Rd~Fl~r~~v 538 (1605)
T KOG0260|consen 459 TFRLNLSVTSPYNADFDGDEMNLHVPQSLETKAELEELAMVPKQIISPQSNKPVMGIVQDTLTAVRKMTKRDVFLNRAQV 538 (1605)
T ss_pred eEEeCeeecCCccCCCCCceeecccCcchhHHHHHHHHhhhhhhhcCCcCCCcceeeehhhHHHHHHHhhHhhhhcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCC-CCcccCccCCcchHHHHHHhcCCCceEeeecccCCCCCCCcCCCCCcEEEEecCeeeecccccc
Q 000235 550 MNILMWWEDFDGKVP-QPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKK 628 (1815)
Q Consensus 550 ~~l~~~~~~~~~~~~-~pai~kp~~lwtGKqi~s~~lp~~in~~~~~~~~~~~~~~~~~~~d~~v~i~~gell~g~ldK~ 628 (1815)
|||+||++.|++..| +|||+||++||||||||+++||++||+.+...|+.|.+.+++.++|+.|+|++|+|+.|+|+|+
T Consensus 539 mnLlm~~p~~d~~~Pa~pai~Kp~PlWTGkQifsliiP~~in~~r~~s~h~d~~~~~~~p~dt~~lie~g~l~~g~l~Kk 618 (1605)
T KOG0260|consen 539 MNLLMYVPDWDGPPPAKPAILKPKPLWTGKQIFSLIIPGGINYIRDHSTHPDSEDELISPGDTRVLIEGGELLIGVLCKK 618 (1605)
T ss_pred HHHHhhccccCCCCCCCcccCCCCcccchhhheeeecCCCcceecccccCcCCCcccccCCCceEEEeCCceEEEEeecc
Confidence 999999999999999 9999999999999999999999999999999999888777889999999999999999999999
Q ss_pred cccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCccChhhHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000235 629 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708 (1815)
Q Consensus 629 ~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~ 708 (1815)
.+|++.++|+|++|.+.|++.|+.|++.+|+|+|+||+.+|||+||+|.+++.+++..+++.|.+|+++|..++++++.+
T Consensus 619 t~G~s~g~lvh~i~~e~Gp~~~~~f~~~iQ~lin~wll~~gfsigIgDtiad~~t~~~iq~~I~~ak~dv~~vi~~a~~~ 698 (1605)
T KOG0260|consen 619 TVGSSAGGLVHVIFLEKGPKIARGFFDSIQTLINSWLLREGFSIGIGDTIADAATMCVIQNTIKEAKRDVLAVIREAQNN 698 (1605)
T ss_pred ccccccCceEEEeehhhCHHHHHHHHHHHHHHHHHHHHhcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHhcCCCCcccchhhhhhhccccccCCCccCCCCC
Q 000235 709 SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788 (1815)
Q Consensus 709 ~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~~eG~Rip~~~~ 788 (1815)
.|+..||+|++|+||++++.+||+||+++|..+++++++.||+++|+.+|||||++||+|+++|||||++|||||||||.
T Consensus 699 ~L~~~pg~tlretfe~~v~~vlndArd~~gssA~~sl~esNn~k~Mv~aGSKGs~inisQ~saCVGqQnVEgkrIpFGF~ 778 (1605)
T KOG0260|consen 699 ELEPTPGRTLRETFENKVNRVLNDARDKSGSSAQKSLSESNNFKTMVVAGSKGSFINISQVSACVGQQNVEGKRIPFGFP 778 (1605)
T ss_pred cccCCcchhHHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccHHHHHhhcCCCcceehhhhhhhhccccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHhhceEEeecCeeecCC
Q 000235 789 DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 868 (1815)
Q Consensus 789 ~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~v~YDgTVRns~ 868 (1815)
+||||||.++|++|+++|||+||||+||+|+|||||+|||||||||||||||+||||||||||+||||+|+|||||||+.
T Consensus 779 ~Rtlphf~kDdysPesrGfVENSyL~GLtP~EfFfHamggREglidtavktaEtGyiqRRL~kameDimv~yDgTVRNs~ 858 (1605)
T KOG0260|consen 779 KRTLPHFSKDDYSPESRGFVENSYLTGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMEDIMVAYDGTVRNSL 858 (1605)
T ss_pred cccccccccCCCCccccceeecccccCCCHHHHHHHHhcccchhhhhhhcccccchHHHHHHHHHHHHHhhcCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCceeeecccccccccchHHHhhhhhhccccCCCCcccchHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 000235 869 GDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948 (1815)
Q Consensus 869 g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 948 (1815)
|+||||.|||||+|+..+|.|..+.+..++..|++.|+++..+.+.... ..++++++..+.+++.+|+.||+++..+|
T Consensus 859 gqviQf~YGeDG~d~~~vE~q~~~~l~~~~a~f~~~~~~d~ld~~~~~~--~~~~~~e~~~~~~l~~lle~e~~~l~~dr 936 (1605)
T KOG0260|consen 859 GQVIQFKYGEDGLDGHPVEFQNGETLGSLNACFESEFAYDALDEPISLS--SEEVVNEISELLKLQNLLECEYKKLVRDR 936 (1605)
T ss_pred ceeEEEEeccCccccceeeccccccccchHHHHHhhhhhhhhcCcccch--hhhHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999888665544 56777888899999999999999999999
Q ss_pred HHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCChHHHHHHHHHHHHhhcccCCCCcccHHHHhhhhhhhh
Q 000235 949 YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028 (1815)
Q Consensus 949 ~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 1028 (1815)
..++ .++..++.+|++|+|++|+|||++++|+++.+..+++.|.+++..++++.+++++++|+|.+++ +|+ +|+
T Consensus 937 ~~l~-~i~~~g~~k~~lp~n~~r~I~Na~~~f~~~~r~~t~l~~~~v~~g~~~l~e~l~iv~g~~~~sr-aqr----l~~ 1010 (1605)
T KOG0260|consen 937 RVLL-YIFEYGDAKWPLPENLQRIIWNALKKFSIDERKPTDLIPFKVVKGVKELAEKLVIVRGEDYISR-AQR----LFN 1010 (1605)
T ss_pred hhhh-hhcccCCcccccchhHHHHHHHHHhhcccccccccccchhhhhhhhhhhhheeEEeeCchhHHH-HHH----HHH
Confidence 9999 6789999999999999999999999999999999999999999999999999999999999988 655 999
Q ss_pred hhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccc
Q 000235 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 1108 (1815)
Q Consensus 1029 ~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvP 1108 (1815)
++||+.|+.|+++.+|+++.++|+|++++|+.+|.++.|.||||||++||||||||+|||||||||+|||+++|||+|||
T Consensus 1011 ~lLrs~l~~krv~~e~rls~eaf~w~~~~Ie~~f~qa~a~pgemvg~lAaqsvgePatqmTlntfh~aGVssknVt~gvp 1090 (1605)
T KOG0260|consen 1011 ILLRSTLATKRVLEEYRLSSEAFEWVLGEIEARFLQAEASPGEMVGALAAQSVGEPATQMTLNTFHYAGVSSKNVTLGVP 1090 (1605)
T ss_pred HHHHhhHHHHHHHHHhcccHHHHHHHhhhhhhheeeeecCccchHhHHHHHHhCCchhhcccchhcccceeeeeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeehhhcccCCCCceEEEeCCCCcchHHHHHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCC
Q 000235 1109 RLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188 (1815)
Q Consensus 1109 RLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~ 1188 (1815)
|||||+|++|++|||+++|+|..+.+++.+.|+.|++.||++||++|+...+|+|||++..|+|++|++|++.||+++|+
T Consensus 1091 rlkei~Nv~k~~ktpsLtV~l~g~~~k~~e~ak~v~~~le~ttl~~vt~~t~i~ydpdp~~tvI~ed~e~v~a~~e~pd~ 1170 (1605)
T KOG0260|consen 1091 RLKEIINVAKNAKTPSLTVYLTGEAAKDNEWAKLVQCCLEHTTLKDVTRATEIYYDPDPQSTVIDEDREFVVAYYEMPDE 1170 (1605)
T ss_pred chhhhhhhhccCCCceEEEEecchhhcchHHHHHHhhhcccccHHhhhccCcceecCCCcceeeccchhhHHhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcEEEEEechhhhhcccCCHHHHHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHH
Q 000235 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDV 1268 (1815)
Q Consensus 1189 ~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~ 1268 (1815)
++. ++++|+|||+||+.+|.+++|+|+.|+.+|...|++|++||++|||++++++|+|+..++ ++|.
T Consensus 1171 D~~--~ispwlLrlelDr~~m~dk~ltm~~ia~~i~~~f~~d~~~i~~ddna~klv~r~ri~~~~-----------e~D~ 1237 (1605)
T KOG0260|consen 1171 DVG--RISPWLLRLELDRASMTDKKLTMEQIAEKINRGFGSDLACIFSDDNAEKLVLRLRIAKEE-----------EDDV 1237 (1605)
T ss_pred chh--hcChHHHHhhhhhhhcccccccHHHHHHHHHhhccCCCceeecccCCcceEEEEEecCcc-----------chhH
Confidence 765 999999999999999999999999999999999999999999999999999999998743 2567
Q ss_pred HHHHHHhhccccceecc-----------------------------cchhhhhccccccccccccccHHHHHHhhcHHHH
Q 000235 1269 FLKKIESNMLTEMALRG-----------------------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319 (1815)
Q Consensus 1269 ~l~~~~~~~l~~~~~~G-----------------------------~nl~~vl~~~~vD~~rt~sNdI~eI~~vlGIEAA 1319 (1815)
|++.||..+|..++++| +||.++|+.++||..||+|||+.||+++|||||+
T Consensus 1238 ~l~~Ie~~ml~~~~l~G~~~i~kV~m~~~~~G~f~~~~ew~LeTdg~~l~~v~s~~~vD~~rt~sn~l~ei~~vlgIea~ 1317 (1605)
T KOG0260|consen 1238 FLKCIEANMLGDMTLRGIPDIFKVYMSPTEDGEFKPVDEWDLETDGVNLRRVLSEPDVDPARTTSNDLVEIAEVLGIEAV 1317 (1605)
T ss_pred HHHHHHHhhhhhcccCCccccceEEEeecCCCceeecceeEEecCchhHHhhhccCCCCcccccccchhhhhhhhcHHHH
Confidence 99999998887776665 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCccccccchHHHHHHHHHHHhhcCccccccc
Q 000235 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGV 1399 (1815)
Q Consensus 1320 R~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gv 1399 (1815)
|.++++|+..|+.++|.||||||++||||+||++|++|+|||||+|+.++++|||||||||+++|++||+++|.|.++|+
T Consensus 1318 r~a~~~e~~~vi~f~gsyVnyrhlaLl~dvmT~~g~lm~itRhg~nr~~tgaLmrcSfEetv~il~~aa~~~ekd~~rgv 1397 (1605)
T KOG0260|consen 1318 RKALLRELLNVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDTGALMRCSFEETVDILMDAAAHAEKDPCRGV 1397 (1605)
T ss_pred HhhhhhhhhheEeecccchhHHHHHHHHHHHhcccceeeeeccccchhhccccccccHHHHHHHHHHHHhhhccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccCccceeeccchhhhhhhh
Q 000235 1400 TENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429 (1815)
Q Consensus 1400 senIi~G~~~p~GTG~fdll~~~~~l~~~~ 1429 (1815)
+||||+||++|+|||+|||++|.++|+..+
T Consensus 1398 sEnImlgqlap~gTg~~d~~ld~e~l~~~~ 1427 (1605)
T KOG0260|consen 1398 SENIMLGQLAPMGTGCFDLMLDAEKLKKGI 1427 (1605)
T ss_pred eeeeeecccccCCCcceeeeccHHhhhccC
Confidence 999999999999999999999999998765
|
|
| >PRK14977 bifunctional DNA-directed RNA polymerase A'/A'' subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-312 Score=3044.58 Aligned_cols=1227 Identities=38% Similarity=0.637 Sum_probs=1080.6
Q ss_pred ccccccceEEEEcCCHHHHHhcceeEEeeCccccCC-CCCCCCCCCCCCCCcCCCccccccccCCCCcCCccceeecccc
Q 000235 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKP 88 (1815)
Q Consensus 10 ~~~~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~-~p~~gGl~D~rlG~~~~~~~C~TCg~~~~~CpGHfGhIeL~~P 88 (1815)
.+.++|++|+||+||+|||+++||++|+++++||.. +|+.|||||||||+++++..|+|||++..+||||||||||++|
T Consensus 4 ~~~~~I~~I~Fg~~S~eeIrk~Sv~~It~~~~~d~~g~P~~gGl~DprlG~~d~~~~C~TCg~~~~~CpGHFGHIELa~P 83 (1321)
T PRK14977 4 LAVKAIDGIIFGLISPADARKIGFAEITAPEAYDEDGLPVQGGLLDGRLGTIEPGQKCLTCGNLAANCPGHFGHIELAEP 83 (1321)
T ss_pred CccceeceEEEecCCHHHHHHhCeEEEecccccCCCCCcCCCCCCccccCCCCCCCCCCCCCCCCCcCCCeeEEEEccCC
Confidence 467899999999999999999999999999999876 9999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHhcccceecceeccCCchHHHHHHHH-hc-----ChHHHHH-----HHH----HHhhhccccCCCCCC
Q 000235 89 MFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IR-----NPKNRLK-----KIL----DACKNKTKCEGGDEI 153 (1815)
Q Consensus 89 V~h~~f~~~v~~iL~~vC~~C~~l~~~~~~~~~~~~~~-~~-----~~~~~~~-----~i~----~~~~~~~~C~~~~~~ 153 (1815)
||||+||+.|++||+|+|++|++|++++.+.+...+++ .+ ..++++. ++. ++|++.+.|.
T Consensus 84 VfHpgf~k~i~~iLr~iC~~C~rlll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~C~----- 158 (1321)
T PRK14977 84 VIHIAFIDNIKDLLNSTCHKCAKLKLPQEDLNVFKLIEEAHAAARDIPEKRIDDEIIEEVRDQVKVYAKKAKECP----- 158 (1321)
T ss_pred ceecccHHHHHHHHHHHHHHhchhhcCcccHHHHHHHHHHhhhcccchhhhhhHHHHHHHHhhhhhhhccCCcCC-----
Confidence 99999999999999999999999999987654322221 11 1222222 211 2355555554
Q ss_pred CCCCCCCCcccccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHHhhcChhhHHHhc
Q 000235 154 DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233 (1815)
Q Consensus 154 ~~~~~~~~~~~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~ 233 (1815)
+||+.++++++.+...+.+.. + ..++.|+|++|+++|++||++|+++||
T Consensus 159 ----------------~C~~~~~~i~~~~~~~~~~~~---------~------~~~~~l~p~~v~~if~~i~~~d~~llg 207 (1321)
T PRK14977 159 ----------------HCGAPQHELEFEEPTIFIEKT---------E------IEEHRLLPIEIRDIFEKIIDDDLELIG 207 (1321)
T ss_pred ----------------CCCCCCCeEEEeeceeeeecc---------c------ccCcccCHHHHHHHHHhcCHHHHHHhC
Confidence 599999999876543222110 0 124579999999999999999999999
Q ss_pred CCCCCCCccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHhh
Q 000235 234 LNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303 (1815)
Q Consensus 234 ~~~~~~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~LQ~~V~~~ 303 (1815)
|++..+||+||||++|||||+++||+ ||||++|++||+.|++|++..+.|++.+++.+.|++||++|++|
T Consensus 208 ~~~~~~~p~~~il~~lpVpP~~~RP~v~~~~~~~~eddlt~~l~~Ii~~N~~l~~~~~~g~~~~~~~~~~~~LQ~~v~~~ 287 (1321)
T PRK14977 208 FDPKKARPEWAVLQAFLVPPLTARPSIILETGERSEDDLTHILVDIIKANQKLKESKDAGAPPLIVEDEVDHLQYHTSTF 287 (1321)
T ss_pred CCCCCCCcceEEEeccccCCCCCcCcEEeCCCcccCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccc-CCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccch
Q 000235 304 FDNELPGQPRATQR-SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTP 382 (1815)
Q Consensus 304 ~dn~~~~~p~~~~~-~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~ 382 (1815)
|||+.+|.|.+.++ ++||+|||+|||||||||||+|||||||||||||||||||||++||||||..||++|||||+||+
T Consensus 288 ~dn~~~~~~~~~~~~~~rp~k~i~qrLkgKeGrfR~nlmGKRVdfSaRtVIspDP~L~i~EVGvP~~iA~~LT~Pe~Vt~ 367 (1321)
T PRK14977 288 FDNATAGIPQAHHKGSGRPLKSLFQRLKGKEGRFRGNLIGKRVDFSARTVISPDPMIDIDEVGVPEAIAMKLTIPEIVNE 367 (1321)
T ss_pred hcccccCCCccccccCCCchhHHHHHhccccccccccccccccccccceeEeCCCCcccccccCHHHHHHhCCCCEEEch
Confidence 99999999988877 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCCcccccEEEeCCCceeeccccccccc-------cccccccEeeeecccCCeEEEecCCcccc
Q 000235 383 YNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD-------HHLELGYKVERHLNDGDFVLFNRQPSLHK 455 (1815)
Q Consensus 383 ~Ni~~l~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~~-------~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk 455 (1815)
||+++|++||+|||+.||| |+||++.+|.+++|++.+++.. ..|++||+|||||+|||+|||||||||||
T Consensus 368 ~Ni~~l~~lv~nG~~~~pG---A~~i~~~~g~~~~l~~~~~~~~~~~~~~a~~L~~g~iV~Rhl~dGD~VL~NRQPSLHk 444 (1321)
T PRK14977 368 NNIEKMKELVINGPDEFPG---ANAIRKGDGTKIRLDFLEDKGKDALREAAEQLEIGDIVERHLADGDIVIFNRQPSLHK 444 (1321)
T ss_pred hhHHHHHHHHHcCCcccCC---cceEEcCCCceeeehhhhhccchhHHHHHHhcccCcEEEEEeecCcEEEeccCCcccc
Confidence 9999999999999999999 9999999999999998765432 57899999999999999999999999999
Q ss_pred ccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccccccccce
Q 000235 456 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535 (1815)
Q Consensus 456 ~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l~g~~ 535 (1815)
||||||+|||+||+||||||+||+||||||||||||+|||||++|||||++||++++||++|++|+|++|++||+|+|+|
T Consensus 445 ~Simah~vkvl~~kT~Rln~~vC~pyNADFDGDEMNlHvPQS~eArAEa~~Lm~v~~niisP~~G~Pi~gliQD~l~g~~ 524 (1321)
T PRK14977 445 LSILAHRVKVLPGATFRLHPAVCPPYNADFDGDEMNLHVPQIEDARAEAIELMGVKDNLISPRTGGPIIGALQDFITAAY 524 (1321)
T ss_pred ccceEEEEEEecCceEEecccccCcccCCcccceeeeecCCCHHHHHHHHHHHhhhhcEecCCCCCeeEEeehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCccCHHHHHHHHHhcccCCCCCCCCccc-CccCCcchHHHHHHhcCCCceEeeecccCCCC---CCCcCCCCCc
Q 000235 536 KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL-KPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGDT 611 (1815)
Q Consensus 536 ~lT~~d~f~~~~~~~~l~~~~~~~~~~~~~pai~-kp~~lwtGKqi~s~~lp~~in~~~~~~~~~~~---~~~~~~~~d~ 611 (1815)
+||++|+||+++|++||+||... ...+|+|||+ ||++|||||||||++||.++||..++++.... ...+.+.+|+
T Consensus 525 lLT~~d~fl~~~e~~~l~~~~~~-~~~lp~PaI~~kp~~lwTGKQi~s~iLp~~~n~~~~~~~~~~~~~~~~~~~~~~d~ 603 (1321)
T PRK14977 525 LITKDDALFDKNEASNIAMLAGI-TDPLPEPAIKTKDGPAWTGKQLFSLFLPKDFNFEGIAKWSAGKAGEAKDPSCLGDG 603 (1321)
T ss_pred hhccCcccCCHHHHHHHHHhCCC-ccccCCCceecCCCCeeeHHHHHHHHcCCCCCceecccccccccccccccCCCCcc
Confidence 99999999999999999998643 4468999999 99999999999999999999999877654321 1122577899
Q ss_pred EEEEecCeeeecccccccccC---CcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCccChhhHHHHH
Q 000235 612 LVRIEKGELLSGTLCKKTLGT---STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETIN 688 (1815)
Q Consensus 612 ~v~i~~gell~g~ldK~~~g~---s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~~~~~~~~~~ 688 (1815)
.|+|+||||++|+|||+++|+ +.+||||.||++||+++|.+||+++|+|+++||+++||||||+|+++++++.+++.
T Consensus 604 ~v~I~~geLl~G~ldK~~~G~~~~~~~~Lih~i~~~yG~~~a~~fL~~l~~l~~~~L~~~GFSigi~D~~~~~~~~~~i~ 683 (1321)
T PRK14977 604 YVLIKEGELISGVIDDNIIGALVEEPESLIDRIAKDYGEAVAIEFLNKILIIAKKEILHYGFSNGPGDLIIPDEAKQEIE 683 (1321)
T ss_pred eEEeecCeEEeeecchHhhccccCCCCcHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhCCEEEeeCcEecCHHHHHHHH
Confidence 999999999999999999998 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--------cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHhcCCC
Q 000235 689 DTISKAKNNVKNLIKQAQ--------DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760 (1815)
Q Consensus 689 ~~i~~a~~~v~~~~~~~~--------~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~~N~~~~M~~sGsK 760 (1815)
+.++++++++.++++.++ .+.++..+|++.++++|..+++.|+++++.+++.+.+.++++|++++|+.||||
T Consensus 684 ~~i~~~~~~v~~l~~~~~~~~~i~~~~~~~~~~~G~~~~~~~e~~i~~~l~~~r~~~~~~~~~~l~~~N~l~~Mv~SGAK 763 (1321)
T PRK14977 684 DDIQGMKDEVSDLIDQRKITRKITIYKGKEELLRGMKEEEALEADIVNELDKARDKAGSSANDCIDADNAGKIMAKTGAR 763 (1321)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccchhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHhhcccc
Confidence 999999999999999888 888999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhhhhccccccC--------CCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcch
Q 000235 761 GSFINISQMTACVGQQNVE--------GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832 (1815)
Q Consensus 761 GS~~N~~Qi~~~lGQQ~~e--------G~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGL 832 (1815)
||++|++||+||||||+++ |+|||+||++||||||.++|.+|+|+|||.|||++||+|+|||||||||||||
T Consensus 764 GS~~Ni~Qi~~~lGQQ~ve~~~~~~~~G~Ri~~~~~~RtLPhF~~~d~~p~a~GfV~nsFl~GL~P~EfFFHaM~GREGL 843 (1321)
T PRK14977 764 GSMANLAQIAGALGQQKRKTRIGFVLTGGRLHEGYKDRALSHFQEGDDNPDAHGFVKNNYREGLNAAEFFFHAMGGREGL 843 (1321)
T ss_pred cCHHHHHHHHhccccccccccccccCCCCCCcCCCCCCcCCCCCCCCCCcccccchhhhhcCCCCHHHHHHHhhcccccc
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCCchhHHHHHHHhhceEEeecCeeecCCCceEEEEecCCCCCceeeecccccccccchHHHhhhhhhccccC
Q 000235 833 IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEE 912 (1815)
Q Consensus 833 iDTAvKTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1815)
||||||||+||||||||||+||||+|+|||||||++|+||||+|||||+|+++++..
T Consensus 844 iDTAVKTA~SGYLQRrLvk~lEDl~v~YD~TVR~s~g~iiQF~YGeDG~d~~~~~~~----------------------- 900 (1321)
T PRK14977 844 IDKARRTEDSGYFQRRLANALEDIRLEYDETVRDPHGHIIQFKFGEDGIDPQKLDHG----------------------- 900 (1321)
T ss_pred cccccccCcCchhHHHHHHHhcceEEecCCeEEeCCCCEEEEeecCCCcCHHHhccC-----------------------
Confidence 999999999999999999999999999999999999999999999999999765321
Q ss_pred CCCcccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCCh
Q 000235 913 NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992 (1815)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p 992 (1815)
.|+|+.|+++++..... ...+.|
T Consensus 901 ----------------------------------------------------~~~n~~~~~~~~~~~~~-----~~~~~~ 923 (1321)
T PRK14977 901 ----------------------------------------------------EAFNLERIIEKQKIEDR-----GKGASK 923 (1321)
T ss_pred ----------------------------------------------------CcccHHHHHHHhhhhcc-----ccCCCH
Confidence 12233333333222110 112234
Q ss_pred HHHHHHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCc
Q 000235 993 MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072 (1815)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEa 1072 (1815)
.++...++++.. .+...++..++ ..+.++++++++|+|++++++.+|.+++|+||||
T Consensus 924 ~~~~~~~~~~~~---------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGe~ 980 (1321)
T PRK14977 924 DEIEELAKEYTK---------------------TFNANLPKLLA--DAIHGAELKEDELEAICAEGKEGFEKAKVEPGQA 980 (1321)
T ss_pred HHHHHHHHHHHH---------------------hhhhhhHHHHH--HHHHHcCCCHHHHHHHHHHHHHHHHhcccCCccc
Confidence 333222222111 12222333332 2456788999999999999999999999999999
Q ss_pred hhhHhhhccCCccccccccccccccccccccccccceeeeehhhcccCCCCceEEEeCCCCcchHHHHHHHHhhhccccc
Q 000235 1073 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTL 1152 (1815)
Q Consensus 1073 VG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL 1152 (1815)
||+|||||||||+|||||||||||||+++|||||||||+||||++|+++||+|+|+|++++..+++.|++++.+||+++|
T Consensus 981 VG~iaAQSiGEP~TQmTLnTFH~AGv~~~nvt~GvpRl~Eii~a~k~~~tp~m~~~l~~~~~~~~~~a~~v~~~ie~~~l 1060 (1321)
T PRK14977 981 IGIISAQSIAEPGTQMTLRTFHAAGIKAMDVTHGLERFIELVDARAKPSTPTMDIYLDDECKEDIEKAIEIARNLKELKV 1060 (1321)
T ss_pred chhhhhhhccCceeeecccccccccccccCcccCccchHHhhhcccCCCCCeEEEEeCCcccchHHHHHHHHhheeeeEH
Confidence 99999999999999999999999999999999999999999999999999999999999887888999999999999999
Q ss_pred cccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEEEEechhhhhcccCCHHHHHHHHhhhcCCCce
Q 000235 1153 RSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1232 (1815)
Q Consensus 1153 ~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~ 1232 (1815)
++|++.++++|||+.. .+.+|.+.+.++.|++++|.+.+...+.....
T Consensus 1061 ~~~~~~~~i~~~~~~~--------------------------------~i~~d~~~i~~~~i~~~~i~~~i~~~~~~~~~ 1108 (1321)
T PRK14977 1061 RALIADSAIDNANEIK--------------------------------LIKPDKRALENGCIPMERFAEIEAALAKGKKF 1108 (1321)
T ss_pred HHhhhheEeeccCCce--------------------------------EEecCHHHHHhcCCCHHHHHHHHHHhhcCCce
Confidence 9999999999987531 23345555666678888887777665544333
Q ss_pred eeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccc-------------------------cceecccc
Q 000235 1233 CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLT-------------------------EMALRGVN 1287 (1815)
Q Consensus 1233 ~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-------------------------~~~~~G~n 1287 (1815)
.+..+++ .+++++.... +.+ ....++++++..++. .+.++|+|
T Consensus 1109 ~~~~~~~----~i~~~~~~~~------~~~--~~~~~l~~l~~~l~~~~i~Gi~~I~r~~i~~~~~~~~~e~~l~teG~n 1176 (1321)
T PRK14977 1109 EMELEDD----LIILDLVEAA------DRD--KPLATLIAIRNKILDKPVKGVPDIERAWVELVEKDGRDEWIIQTSGSN 1176 (1321)
T ss_pred EEeecCC----EEEEecCccc------ccc--hHHHHHHHHHHhcCCcEEecCCCceEEEEEeeccCCCeeEEEEecCcC
Confidence 3332222 2233332110 000 011233333332221 25667899
Q ss_pred hhhhhccccccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccc------c
Q 000235 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT------R 1361 (1815)
Q Consensus 1288 l~~vl~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~it------R 1361 (1815)
|.+||.+++||+.||+||||+||+++|||||||++|++||+.||++||++||+|||+||||+||++|++++|| |
T Consensus 1177 l~~vl~~~~Vd~~rt~sN~i~ei~~~lGIEAaR~~ii~Ei~~v~~~~G~~V~~rHi~LlaD~MT~~G~~~~i~~~~~~~R 1256 (1321)
T PRK14977 1177 LAAVLEMKCIDIANTITNDCFEIAGTLGIEAARNAIFNELASILEDQGLEVDNRYIMLVADIMCSRGTIEAIGLQAAGVR 1256 (1321)
T ss_pred HHHHhCCCCCcccccEECCHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHccCceEEeccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccceeeccchh
Q 000235 1362 HGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423 (1815)
Q Consensus 1362 ~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fdll~~~~ 1423 (1815)
|||++.++|||++||||||+++|++||++|+.|+|+|||||||+|+++|+|||+|||++|..
T Consensus 1257 ~Gi~~~~~s~l~~asFE~t~~~L~~AA~~g~~D~l~gvsenii~G~~~~~GTG~~~Ll~~~~ 1318 (1321)
T PRK14977 1257 HGFAGEKDSPLAKAAFEITTHTIAHAALGGEIEKIKGILDALIMGQNIPIGSGKVDLLMDFS 1318 (1321)
T ss_pred cccccCCCCHHHhcCHHHHHHHHHHHHHhcCcCccCChHHhhhcCCCccCccceEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999864
|
|
| >KOG0261 consensus RNA polymerase III, large subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-311 Score=2750.21 Aligned_cols=1284 Identities=39% Similarity=0.658 Sum_probs=1094.5
Q ss_pred ccccccceEEEEcCCHHHHHhcceeEEeeCccccCC---CCCCCCCCCCCCCCcCCCccccccccCCCCcCCccceeecc
Q 000235 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG---KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86 (1815)
Q Consensus 10 ~~~~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~---~p~~gGl~D~rlG~~~~~~~C~TCg~~~~~CpGHfGhIeL~ 86 (1815)
...++|++|+|+++|++||++.+++||.+..+||.. .|..+|++|||||+.++...|+|||++..+|.|||||++|+
T Consensus 8 ~~~kki~~i~F~~~s~~ei~~~a~v~v~~~~LY~~~~~~~P~~~G~LD~rMGvs~K~~~C~TCg~~la~C~GHfGy~~L~ 87 (1386)
T KOG0261|consen 8 EIPKKIKHIQFSILSPEEIRQQAEVEVSSKDLYDISTQRAPLPNGPLDPRMGVSNKKDKCATCGEGLADCIGHFGYLKLA 87 (1386)
T ss_pred cccceeeeEeeccCCHHHHHhcceEEeeccchhhhhcccCCCcCCCcCcccCCCCCCCccchhccchhhcccccceEeec
Confidence 345799999999999999999999999999999875 49999999999999999999999999999999999999999
Q ss_pred ccccchhhhhHHHHHhcccceecceeccCCchHHHHHHHHhcCh-------HHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 000235 87 KPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP-------KNRLKKILDACKNKTKCEGGDEIDVPGQD 159 (1815)
Q Consensus 87 ~PV~h~~f~~~v~~iL~~vC~~C~~l~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~C~~~~~~~~~~~~ 159 (1815)
+||||+|||+.++.||+|||++|+.+++++++.+ +...++++| +...++|++.||+...|.+
T Consensus 88 LPVFhiGyfk~ti~iLq~ICK~Cs~ilL~~~~k~-~fl~~lr~p~~~~l~k~~l~kri~~~CkK~~~C~h---------- 156 (1386)
T KOG0261|consen 88 LPVFHIGYFKATIQILQCICKNCSSILLSEEDKR-QFLKKLRNPGLDNLRKKALLKRIVAKCKKVNTCSH---------- 156 (1386)
T ss_pred ceeeeehhHHHHHHHHHHHHHhhhhhhcCHHHHH-HHHHHhhCCCCChHHHHHHHHHHHHHhhccccccc----------
Confidence 9999999999999999999999999999976553 233344443 3557889999999999976
Q ss_pred CCcccccccCCCCccchhhhhc-c-cchhhh-hHHhhcccc-------c-------cCC-CCccchhcccCCHHHHHHHH
Q 000235 160 GEEPLKKNKGGCGAQQPKLTIE-G-MKMIAE-YKAQRKKND-------D-------QEQ-LPEPVERKQTLTAERVLGVL 221 (1815)
Q Consensus 160 ~~~~~~~~~~gCg~~~p~i~k~-~-~~l~~~-~~~~~~~~~-------~-------~~~-~~~~~~~~~~l~p~~v~~il 221 (1815)
||+.++.++|- + +++.++ |+..++..+ + ..+ +.........|+|..|+++|
T Consensus 157 -----------Cg~~NG~VKK~~~~lkIiHd~~~~~~k~~~~~~~~~~~~~~~~~~n~e~~~~~~~~~~~LnPl~vLnLF 225 (1386)
T KOG0261|consen 157 -----------CGALNGTVKKAAALLKIIHDRFKLVKKSDPLVTNERGEFKTAISHNKELEGHLSSCCEELNPLVVLNLF 225 (1386)
T ss_pred -----------cCCcCceeeccccceeEeeehhhccccccchhhhhHHHHHHHhhcCcchHhHHHHHHhhcChHHHHHHH
Confidence 99999999983 3 676665 222111000 0 000 00001124579999999999
Q ss_pred hhcChhhHHHhcCCCCCCCccceEEeecccCCCCCCCC-----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 000235 222 KRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290 (1815)
Q Consensus 222 k~i~~~d~~~l~~~~~~~~Pe~~il~~lpVpP~~~RP~-----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~ 290 (1815)
++|++.||++||+.+...||+.+|++++||||.|+||| ||||.+|.+||-.|..|++.+..|++...+.
T Consensus 226 k~i~~~D~eLLg~~~~~~~P~~Li~t~~~vPP~cIRPSV~~~~k~gtnEDDlT~KltEIi~tn~vik~~~~~g~~~~~im 305 (1386)
T KOG0261|consen 226 KQIKEDDCELLGMDSEEGRPENLIITRVPVPPVCIRPSVMSEDKAGTNEDDLTMKLTEIILTNDVIKKHLSKGTPINLIM 305 (1386)
T ss_pred hhCCccccceeeeccCcCCchheEEEeccCCccccccceeecCCCCCCccchhhhhhhhhhHHHHHHHHhhcCCCchhhh
Confidence 99999999999999989999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHH
Q 000235 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370 (1815)
Q Consensus 291 ~~~~~LQ~~V~~~~dn~~~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~ 370 (1815)
|.|+.||.+|+.||+++.+|.|..+.. ++|++||.||||||+||||+||.||||||||||||||||||+|||||||..|
T Consensus 306 E~Wd~lQl~~AlyINSEl~g~~~~~~p-~kp~RGf~QRLKGKqGRFRgNLSGKRVDFSGRTVISPDPNL~IdeVgVP~rv 384 (1386)
T KOG0261|consen 306 EDWDFLQLQVALYINSELPGIPINMAP-KKPTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVGVPIRV 384 (1386)
T ss_pred hhhHHHHHHHHHhhcccCCCCCCCCCC-CCchHHHHHHhcccCCceeccccCceeeccCceeeCCCCCcceeeccchHHH
Confidence 999999999999999999999876543 5899999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcccchhHHHHHHHHHHcCCCCCCCcccccEEE-eCCCceeeccccccc-cccccccccEeeeecccCCeEEEe
Q 000235 371 ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII-RDDGQRLDLRYLKKS-SDHHLELGYKVERHLNDGDFVLFN 448 (1815)
Q Consensus 371 A~~LT~PE~Vt~~Ni~~l~~lv~ng~~~~pg~~~A~~i~-~~~g~~~~l~~~~~~-~~~~L~~g~~V~Rhl~dgD~VL~N 448 (1815)
|+.|||||+||.+||++||+||+|||+.||| ||||+ |.+|.+..|+|.+|. -+..|++|++|||||+|||+||||
T Consensus 385 AkiLTfpE~Vt~~Ni~klr~lV~NGP~vhPG---ANyv~~r~~~~kr~L~yg~R~kiA~eLk~GdvVERHL~DgDvVLFN 461 (1386)
T KOG0261|consen 385 AKILTFPERVTRANIRKLRQLVRNGPNVHPG---ANYVVQRGEGFKRFLKYGNRDKIADELKIGDVVERHLMDGDVVLFN 461 (1386)
T ss_pred HHHhcchhhccHHHHHHHHHHHhcCCCCCCC---cchhhhcccchhhHhhcCcHHHHHHhhccchHHHhhcccCCEEEEc
Confidence 9999999999999999999999999999999 99998 788899999998763 456899999999999999999999
Q ss_pred cCCccccccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccc
Q 000235 449 RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528 (1815)
Q Consensus 449 RQPsLHk~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~Q 528 (1815)
|||||||||||+|+|||+||+|||||.|||+||||||||||||+||||++||||||.+||.+.+|+++|++|+|+++.+|
T Consensus 462 RQPSLHkmSIM~H~akV~p~RTfRFNEcvCtPYNADFDGDEMNlHvPQTEEAraEA~~LMgvknNlvTPr~GEpiiAAtQ 541 (1386)
T KOG0261|consen 462 RQPSLHKMSIMSHRAKVMPWRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEALVLMGVKNNLVTPRNGEPIIAATQ 541 (1386)
T ss_pred CCchHHHHHHHHHHhhcccCceeeccccccCCcCCCCCcccccccCCchHHHHHHHHHHhccccccccCCCCCceeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceecccCCCccCHHHHHHHHHhcccC--CCCCCCCcccCccCCcchHHHHHHhc-CC-----CceEeeecccCC-
Q 000235 529 DTLLGCRKITKRDTFIEKDVFMNILMWWEDF--DGKVPQPTILKPRPLWTGKQVFNLII-PK-----QINLFRTAAWHA- 599 (1815)
Q Consensus 529 D~l~g~~~lT~~d~f~~~~~~~~l~~~~~~~--~~~~~~pai~kp~~lwtGKqi~s~~l-p~-----~in~~~~~~~~~- 599 (1815)
|+|+|+||||.+|+||+|++++||+.++... .-.+|+|||+||..|||||||||.++ |+ .+|+..+.+...
T Consensus 542 DFiTg~YLlt~KDtF~dRa~~~ql~s~~~d~~~~i~lppPaI~KP~~LwTGKQ~fsvlirpn~~s~v~~Nl~~k~k~~~~ 621 (1386)
T KOG0261|consen 542 DFITGGYLLTHKDTFLDRAEFSQLCSYMSDAMTHIDLPPPAILKPVELWTGKQLFSVLIRPNDDSPVRVNLDAKNKNFSL 621 (1386)
T ss_pred hhhhcceeeecccccccHHHHHHHHHHHhccccccCCCChhhcCceeeeccCEEEEEEeccCCCCceEEeeccccceeec
Confidence 9999999999999999999999999876443 23589999999999999999999999 44 256655444221
Q ss_pred -CCCCCcCCCCCcEEEEecCeeeecccccccccCC-cccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccC
Q 000235 600 -DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTS-TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677 (1815)
Q Consensus 600 -~~~~~~~~~~d~~v~i~~gell~g~ldK~~~g~s-~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~ 677 (1815)
......+|.+|++|+|+|.||++|++||+++|.+ +.+|++.|.++||..+|++.|+++.++..+||..+||||||+|+
T Consensus 622 ~~~k~~~mc~nDg~v~irns~l~sG~ldKs~lG~g~k~~lfy~llrDyg~~aAa~am~rlaklc~r~lgnrGFSIGi~DV 701 (1386)
T KOG0261|consen 622 VKGKSFEMCPNDGYVIIRNSELISGVLDKSTLGSGKKDSLFYILLRDYGSMAAADAMNRLAKLCARFLGNRGFSIGIDDV 701 (1386)
T ss_pred ccCCCcccCCCCCeEEEecchhhhcccccccccCCCccceEeeehhhcchHHHHHHHHHHHHhhhhhccccccccccCCC
Confidence 1122367999999999999999999999999974 68999999999999999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHhc
Q 000235 678 IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757 (1815)
Q Consensus 678 ~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~~N~~~~M~~s 757 (1815)
.+.+...+++++.++.++.+|+++|..+.+|+|+.+||++.+|++|+.+..+|+++||++|+.|+..|.+.|+.++|+.|
T Consensus 702 qPg~~L~~~k~~lv~~gY~kc~~~I~e~~kG~L~~qpg~~~eetLEa~I~~~Ls~IRe~~G~~C~~eL~~~NsPliMa~C 781 (1386)
T KOG0261|consen 702 QPGEILSQEKEELVNRGYAKCDEKIEEYNKGKLQLQPGCNEEETLEAEILSELSTIREEAGKICIRELHPRNSPLIMALC 781 (1386)
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccChHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchhhhhhhccccccCCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhcc
Q 000235 758 GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837 (1815)
Q Consensus 758 GsKGS~~N~~Qi~~~lGQQ~~eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAv 837 (1815)
|||||++|+|||+||||||.+.|+|+|.||.+|+||||.+....|+|+|||.|||++||||.|||||+|+||||||||||
T Consensus 782 GSKGS~INiSQMvACVGQQ~ISG~RvPdGf~dRsLPHF~r~Sk~P~aKGFV~NSFySGLTptEFfFHtm~GREGLVDTAV 861 (1386)
T KOG0261|consen 782 GSKGSKINISQMVACVGQQIISGHRVPDGFEDRSLPHFERHSKTPAAKGFVANSFYSGLTPTEFFFHTMSGREGLVDTAV 861 (1386)
T ss_pred cCCCCcccHHHHHHHhhhhhhcCCcCCCccccccCccccccCCCccccchhhhhcccCCCchhhheeecccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHhhceEEeecCeeecCCCceEEEEecCCCCCceeeecccccccccchHHHhhhhhhcccc-CCCCc
Q 000235 838 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE-ENWNP 916 (1815)
Q Consensus 838 KTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 916 (1815)
|||+||||||||||+||||.++||||||||.|+||||.||+|||||+.+|...- ..+|.+.|.+.... +....
T Consensus 862 KTAETGYMqRRLmK~LEDL~~~YDgTVR~s~~~vvqF~YG~DglDPa~mEg~~~------pv~f~r~~~~~~~~~~~~~~ 935 (1386)
T KOG0261|consen 862 KTAETGYMQRRLMKSLEDLSVQYDGTVRNSNGDVVQFTYGGDGLDPAMMEGKDQ------PVNFNRVFDHAKAIFPHRHD 935 (1386)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhcCceecCCCcEEEEeecCCCCChhhhcCCCC------chhHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999999998652 35677776554221 10001
Q ss_pred ccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCChHHHH
Q 000235 917 NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996 (1815)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p~~~~ 996 (1815)
..+..+.+ ...++++ |++ .|.. .-..++
T Consensus 936 ~~l~~~el---------~e~~~~~----------l~~-------------------------~f~~--------~~~~F~ 963 (1386)
T KOG0261|consen 936 PPLSSEEL---------DETLEEE----------LLR-------------------------KFTE--------KGDPFV 963 (1386)
T ss_pred CCCCHHHH---------HHHHHHH----------HHH-------------------------Hhhh--------hhhHHH
Confidence 11111111 1111110 000 0100 001222
Q ss_pred HHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhH
Q 000235 997 EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076 (1815)
Q Consensus 997 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~i 1076 (1815)
..+++++..+.+..+ +.+.+-. ..--.......+...++++.+.++.++..+..||+++.++||.+||+|
T Consensus 964 ~~~~~~i~~~~~~~~------~~~~~~~----d~~~~~~~~~~~~~~~~~t~kql~~f~~~~~~ky~~a~~EpGTavGAi 1033 (1386)
T KOG0261|consen 964 HELREFIASLSKKIK------KLQDKYG----DECGPKFCPDLLYQISRLTEKQLEKFVERCLDKYMRAKVEPGTAVGAI 1033 (1386)
T ss_pred HHHHHHHHHHHHHHH------HHhhhcc----cccCCccCccceeeeeeccHHHHHHHHHHHHHHHHhhhcCCcchhhhh
Confidence 223333322211100 0000000 000000111223456889999999999999999999999999999999
Q ss_pred hhhccCCccccccccccccccccccccccccceeeeehhhcccCCCCceEEEeCCCCcchHHHHHHHHhhhccccccccc
Q 000235 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVT 1156 (1815)
Q Consensus 1077 AAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~ 1156 (1815)
||||||||+|||||+|||||||++|||||||||+|||||++|+|+||+++..|.++. |+..|+.|+.+||+|+|+||+
T Consensus 1034 ~aQSIGEPGTQMTLKTFHFAGVASMNiTlGVPRIkEIINAsk~ISTPIItA~L~n~~--d~~~Ar~VKgRiEKt~L~dv~ 1111 (1386)
T KOG0261|consen 1034 AAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKTISTPIITAELENPH--DERSARVVKGRIEKTTLGDVC 1111 (1386)
T ss_pred hcccCCCCCceeeeeeeeecceeeeeeccCcchHHHHHhhhcccCccceeeeecCch--hHHHHHHHhhhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999874 688999999999999999999
Q ss_pred eeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEEEEechhhhhcccCCHHHHHHHHhhhc-----CCCc
Q 000235 1157 EATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF-----DDDL 1231 (1815)
Q Consensus 1157 ~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~-----~~~~ 1231 (1815)
++++++|.|+..... +++.+++.......+++++|+..|...- +.|+
T Consensus 1112 ~yieeV~~p~~~fl~----------------------------i~vd~~~I~~l~L~i~~~~I~~sI~~s~~~k~~~~~v 1163 (1386)
T KOG0261|consen 1112 SYIEEVYGPDSCFLL----------------------------IRVDLKRISLLQLEITIESIAYSILKSPKRKVKPNDV 1163 (1386)
T ss_pred HHHHHHhCCcceEEE----------------------------EEecHhHHhhhhccccHHHHHHHHhcCCccccCCcce
Confidence 999999988654222 3444555555666788899988875431 2344
Q ss_pred eeeecCCCccceEEEEEEccCCCCCC------------CCC--C-CcchhHHHHHHHHhhccccceecccchhhhhcccc
Q 000235 1232 TCIFNDDNADKLILRIRIMNDEAPKG------------ELN--D-ESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHED 1296 (1815)
Q Consensus 1232 ~~~~~~dn~~~~~~~ir~~~~~~~~~------------~~~--~-~~~~~~~~l~~~~~~~l~~~~~~G~nl~~vl~~~~ 1296 (1815)
.++. +..+++......+... +.. . -+. ....+..-|..-+.++.++|.+|++||+.+|
T Consensus 1164 ~v~~------~~~~~v~~~~~~~~S~~~~lq~lk~~L~~Vvv~gip~v-nr~vi~~de~~~~y~L~vEG~gLr~Vm~t~G 1236 (1386)
T KOG0261|consen 1164 RVVG------ETTLRVTPVSDTKSSVYYNLQRLKRSLPNVVVKGIPEV-NRAVINIDEKRGLYKLLVEGTGLRAVMNTDG 1236 (1386)
T ss_pred EEec------ceeEEEeecccccchhhhhHHHHHhhCCceEEecCcch-hhhheeecccCCceEEEEeccchHHHhccCC
Confidence 4331 1233333322110000 000 0 000 0000000011112367789999999999999
Q ss_pred ccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCccccccc
Q 000235 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376 (1815)
Q Consensus 1297 vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aS 1376 (1815)
|+..||.||++.||.+||||||||..||+||..+|+.+|++||+||++||||+||++|++++|||+|+.+++.|.||.||
T Consensus 1237 V~g~~TtsNnv~Ev~~vLGIEAAR~~II~EI~ytM~~HGmsiD~RHiMLLaDvMTyrGEVlGITRfGl~KM~~SVL~lAS 1316 (1386)
T KOG0261|consen 1237 VKGRRTTSNNVLEVEKVLGIEAARTTIISEIGYTMSNHGMSIDPRHIMLLADVMTYRGEVLGITRFGLAKMKDSVLMLAS 1316 (1386)
T ss_pred ccccccccCceEEeehhhchHHHHHHHHHHHHHHHHhcCcccCHHHHHHHHHHhhhcceeeeeeehhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcccccccccccccCCccccCccceeeccchhh
Q 000235 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424 (1815)
Q Consensus 1377 FEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fdll~~~~~ 1424 (1815)
||+|.++|++||.+|++|.+.||||+||||.++.+|||.|+|+...+.
T Consensus 1317 FEkT~DhLF~AA~~~k~D~I~GVSEcIIlG~pm~iGTG~fkl~~~~~~ 1364 (1386)
T KOG0261|consen 1317 FEKTADHLFDAAAYGKKDAIEGVSECIILGIPMCIGTGIFKLLQRTDD 1364 (1386)
T ss_pred hhhhhHHHHHHHHhcCcccccchhhheecccceeccccHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999886554
|
|
| >KOG0262 consensus RNA polymerase I, large subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-284 Score=2576.51 Aligned_cols=1312 Identities=32% Similarity=0.511 Sum_probs=993.6
Q ss_pred cccceEEEEcCCHHHHHhcceeEEeeCccccCC-CCCCCCCCCCCCCCcCCCccccccccCCCCcCCccceeeccccccc
Q 000235 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFH 91 (1815)
Q Consensus 13 ~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~-~p~~gGl~D~rlG~~~~~~~C~TCg~~~~~CpGHfGhIeL~~PV~h 91 (1815)
+.+..|+||+|+++||+++||.+|++|.+||+. +|..|||||++||+.+....|.||++....||||||||||+.||||
T Consensus 11 ~~~~~v~Fg~yt~~ei~klSv~kIt~p~~~D~lGhPi~GGLYDl~LGp~~~~~~C~TC~~~~~~CPGH~GHIeL~~pvyn 90 (1640)
T KOG0262|consen 11 SFQPSVSFGSYTDQEIRKLSVKKITNPITFDNLGHPIPGGLYDLALGPLDNSDVCSTCNQDELNCPGHMGHIELPVPVYN 90 (1640)
T ss_pred ccccceeeeccCHHHHhhcceeEecCceeecccCCCCCCcccccccCCccchhhhhhhcchhhcCCCccCeeeecccccC
Confidence 345569999999999999999999999999996 9999999999999888888999999999999999999999999999
Q ss_pred hhhhhHHHHHhcccceecceeccCCchHH-HHHHHHhcC-----hHHHHHHHHH--Hhhh-------cccc---------
Q 000235 92 IGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRN-----PKNRLKKILD--ACKN-------KTKC--------- 147 (1815)
Q Consensus 92 ~~f~~~v~~iL~~vC~~C~~l~~~~~~~~-~~~~~~~~~-----~~~~~~~i~~--~~~~-------~~~C--------- 147 (1815)
|+||+.++++|++.|++||+|++...+.. +.+.+++.. ....+..+.. .+.. .+.|
T Consensus 91 PlfF~~ly~lLr~sCl~Chhf~~k~~~v~~~~cqLrll~~G~i~ea~~Le~i~~~~~~d~~d~~~~~~k~~~~~~v~~~i 170 (1640)
T KOG0262|consen 91 PLFFDFLYNLLRGSCLFCHHFRCKNVDVHILFCQLRLLEYGLIEEAEDLESITSETVEDNEDESLNEIKSCRAQYVTEAI 170 (1640)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccCcchhHHHHHhhhhhhccHHH
Confidence 99999999999999999999999875442 222233211 1111222211 0000 0011
Q ss_pred ----CCCCCCCCCC-CCCC-----ccc-----ccccCCCCccchhhhhcccc-hhhhhHHhh------------------
Q 000235 148 ----EGGDEIDVPG-QDGE-----EPL-----KKNKGGCGAQQPKLTIEGMK-MIAEYKAQR------------------ 193 (1815)
Q Consensus 148 ----~~~~~~~~~~-~~~~-----~~~-----~~~~~gCg~~~p~i~k~~~~-l~~~~~~~~------------------ 193 (1815)
...+.-...+ .+.. .++ .++|.+|+..+|++||++.. ++..+...+
T Consensus 171 ~~~~~~~~~~~t~~~~~~~~~lv~~f~k~~l~~kkC~~C~~~~p~~rk~~~~kv~~~~~~~~~~~~~~~~~~i~~~~~~~ 250 (1640)
T KOG0262|consen 171 SEALLDKSEPNTKNSTELKKKLVTAFLKNALSRKKCPRCKHSNPKLRKDGFRKVFIDALSSKVGANVIRGAKIKKDVGSK 250 (1640)
T ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHHHhhccccCCcccCCCchhhccccceeeeehhcccccccchhheeeehhcccc
Confidence 1000000000 0000 111 57899999999999999864 333332100
Q ss_pred --c--cccc------cCCC-------C--ccchhcccCCHHHHHHHHhhcChhhHHHhcCCCC-------CCCc-cceEE
Q 000235 194 --K--KNDD------QEQL-------P--EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK-------YARP-DWMIL 246 (1815)
Q Consensus 194 --~--~~~~------~~~~-------~--~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~~~~~-------~~~P-e~~il 246 (1815)
+ +.+. ++.. + .....++.|.|.+|+++|+.||.+|-++|.+... ...| +.|||
T Consensus 251 ~~~d~~~~G~~E~~~~g~d~~e~~~~~~~~~~t~~~~l~~tevR~~l~~lf~ne~~~l~~lf~l~~~~~~k~~p~d~FFl 330 (1640)
T KOG0262|consen 251 GFEDSGIDGSNEVEEDGKDLFEKSTEPAEFEKTGKKYLLPTEVREHLRDLFKNEGELLSYLFPLWDSGSGKIDPSDMFFL 330 (1640)
T ss_pred cccccccCCccccccccccccccccccccccccccccccHHHHHHHHHHHHhhhHHHHHHhhccccccccccCccceeee
Confidence 0 0000 0000 0 0011357899999999999999999887654211 2345 58999
Q ss_pred eecccCCCCCCCC---------chhHHHHHHHHHHHHHHHHHHHc--CC-C-------------hhhHHHHHHHHHHHHH
Q 000235 247 QVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERN--GA-P-------------AHIISEFAQLLQFHIA 301 (1815)
Q Consensus 247 ~~lpVpP~~~RP~---------ddlT~~l~~Ii~~N~~lk~~~~~--g~-~-------------~~~i~~~~~~LQ~~V~ 301 (1815)
.+|+|||+++||. +.+|..|.+||+.|..|+++... |. + ...+-+.|..||.+|+
T Consensus 331 d~l~VpPtrfRP~s~~gd~~~en~Qt~~L~kVle~s~~i~~~~~~m~~kl~~~~k~~l~~~~g~~~kl~~aw~~LQ~~vn 410 (1640)
T KOG0262|consen 331 DNLLVPPTRFRPPSMLGDEVHENPQTLNLNKVLESSVLIRKLLKDMKGKLDEELKLILERLRGIFSKLINAWLQLQASVN 410 (1640)
T ss_pred eccccCCcccCCchhcchhhhcChHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999998 77999999999999998876522 11 1 1223456889999999
Q ss_pred hhccCCCCCCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccc
Q 000235 302 TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381 (1815)
Q Consensus 302 ~~~dn~~~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt 381 (1815)
.+||++..+. ..+ ..| .||+|.|++|||+||++||||||||+|||||||||||.+||||||..||++|||||+||
T Consensus 411 ~lfDs~~~~k---~~r-~~~-pGikQiLEKKeGLFRkhMMGKRVN~AaRSVIsPDPnI~tnEIGIP~vFA~KLTyPepVt 485 (1640)
T KOG0262|consen 411 VLFDSKMASK---WSR-DSP-PGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGIPPVFAKKLTYPEPVT 485 (1640)
T ss_pred HHhccccccc---ccc-CCC-chHHHHHHHhhhhHHHHhhccccchhhccccCCCCCccccccCCchHHHhhccCCCcCC
Confidence 9999997532 111 123 69999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCCCcccccEEEeCCCceeeccccc--ccc--ccc-cc---------cccEeeeecccCCeEEE
Q 000235 382 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK--KSS--DHH-LE---------LGYKVERHLNDGDFVLF 447 (1815)
Q Consensus 382 ~~Ni~~l~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~--~~~--~~~-L~---------~g~~V~Rhl~dgD~VL~ 447 (1815)
+||+++||++|+|||+.||| |+||+++||.+..|.-.. ++. +.+ |. -+.+|+||++|||+||+
T Consensus 486 ~~NV~elr~aViNGP~~hPG---A~~iqd~dg~~t~l~~~~~~qR~alA~qLLtpst~~~~~~~~K~V~RHvknGDvvlm 562 (1640)
T KOG0262|consen 486 PWNVNELRKAVINGPDVHPG---ATYIQDEDGTLTLLSPMTDEQREALANQLLTPSTGNPTEFGTKKVHRHVKNGDVVLM 562 (1640)
T ss_pred cccHHHHHHHHhcCCCCCCC---cceeecCCCceeecCCCCHHHHHHHHHHhhccccCCCcccCCceeeeeccCCcEEEE
Confidence 99999999999999999999 999999999998886332 221 112 22 46899999999999999
Q ss_pred ecCCccccccccceeEEeecC-CeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceec
Q 000235 448 NRQPSLHKMSIMGHRIKIMPY-STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526 (1815)
Q Consensus 448 NRQPsLHk~Simah~vkv~~~-~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~ 526 (1815)
||||||||+|||||+||||++ |||||||++|++|||||||||||+|+|||+.|||||++|++++.|++.|++|.|++||
T Consensus 563 NRQPTLHKPSimaHkaRVL~gEktlRlHYANCkaYNADFDGDEMN~HfPQse~araEa~~ian~dsqYLvPt~G~PlrGL 642 (1640)
T KOG0262|consen 563 NRQPTLHKPSIMAHKARVLPGEKTLRLHYANCKAYNADFDGDEMNVHFPQSEIARAEAYNIANTDSQYLVPTDGTPLRGL 642 (1640)
T ss_pred cCCCccccchhhhhhheecCCcceeeeeecccccccCCCCcchhcccCCchhhHHHHHHHHhccCCceeccCCCCchhhh
Confidence 999999999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceecccCCCccCHHHHHHHHHhcc-c--CCCCCCCCcccCccCCcchHHHHHHhc----CC---CceEeeecc
Q 000235 527 VQDTLLGCRKITKRDTFIEKDVFMNILMWWE-D--FDGKVPQPTILKPRPLWTGKQVFNLII----PK---QINLFRTAA 596 (1815)
Q Consensus 527 ~QD~l~g~~~lT~~d~f~~~~~~~~l~~~~~-~--~~~~~~~pai~kp~~lwtGKqi~s~~l----p~---~in~~~~~~ 596 (1815)
||||++++++||.||+||+|++|+||++... . ..-++++|+|+||.+|||||||||.+| |+ .||+..++|
T Consensus 643 IQDHiVsgv~LT~rd~Fftre~y~qLv~~~l~~~~~rI~~lpPtIlkP~~LWTGKQVIsTil~Ni~P~~~p~iNl~~kaK 722 (1640)
T KOG0262|consen 643 IQDHIVSGVLLTMRDSFFTREDYQQLVFAGLSDTFKRIKLLPPTILKPAPLWTGKQVISTILKNIIPEGHPPINLESKAK 722 (1640)
T ss_pred hhhheeeeEEEEecccccCHHHHHHHHHHhhhhhccceeccCccccccccccccchHHHHHHHhcCCCCCCcccchhccc
Confidence 9999999999999999999999999998642 1 122578999999999999999999999 44 599998877
Q ss_pred cCCCCCCCc----CCCCCcEEEEecCeeeecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCcee
Q 000235 597 WHADNDKGI----LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672 (1815)
Q Consensus 597 ~~~~~~~~~----~~~~d~~v~i~~gell~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSi 672 (1815)
...+ .|.. -..+++.|+|++||||+|||||+++|++.+||||++++.||++.+.++|+.+.||++.||+.+||||
T Consensus 723 ip~~-~W~~~s~e~~l~Es~v~ir~GellcGVLDKa~~Gat~yGLvH~~~ElYG~~~s~~lLs~~srlFT~ylq~~GFT~ 801 (1640)
T KOG0262|consen 723 IPGK-AWRVHSEEPKLNESQVLIREGELLCGVLDKAQFGATAYGLVHCCHELYGGETSGKLLSVFSRLFTAYLQMHGFTL 801 (1640)
T ss_pred Cchh-hcCCCCCcccCCcceEEEecCceEEEeechhhcCchhhhhhhhhhhhhCccchhhHHHHHHHHHHHHHHHhcccc
Confidence 4322 1110 1246788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-------------CCHHHHHHHHHHHHHHHHHHHHHH
Q 000235 673 GIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG-------------RTMMESFENKVNQVLNTARDEAGS 739 (1815)
Q Consensus 673 gi~D~~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~~~~~-------------~~~~~~~e~~v~~~ln~~~~~~~~ 739 (1815)
|++|++++++.+++++++|++++.-..+..+.+..-..+..+. .+-...++..+...+|...+.+.+
T Consensus 802 GvdDlll~~~~D~kR~~il~e~~~vG~qa~~~~~~l~~da~~del~~~le~~y~~d~~~~~~LD~~~k~~~n~~ts~I~~ 881 (1640)
T KOG0262|consen 802 GVDDLLLDKDADKKRREILRESRNVGNQAAKEAFGLDVDAPPDELRSRLEAIYLKDADKLAMLDRVMKSELNGYTSEIVK 881 (1640)
T ss_pred ccceeeechhhhHHHHHHHHhhhcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhHHHHh
Confidence 9999999999999999999988766555555443222222211 112234555666677777777766
Q ss_pred HHH----hhcCCCChHHHHHhcCCCCcccchhhhhhhccccccCCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCC
Q 000235 740 SAQ----KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 815 (1815)
Q Consensus 740 ~~~----~~l~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~~eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~G 815 (1815)
.|. -..+|.|++..|+.||||||+||++||+||||||++||+|+|.|.+|||||+|.++|.+|+|+|||..+|++|
T Consensus 882 ~cvP~GLlk~FP~N~mqlM~~SGAKGS~VN~~QISclLGQqeLEGkRvPlMvSGKtLPsF~p~e~spraGGfI~~RFlTG 961 (1640)
T KOG0262|consen 882 KCVPDGLLKKFPENNMQLMIQSGAKGSNVNTSQISCLLGQQELEGKRVPLMVSGKTLPSFAPYETSPRAGGFIDGRFLTG 961 (1640)
T ss_pred hhccchhhhcCCcchHHHHHHhcCCcccccHHHHHHhhhhHhhcCCccceeecCCccCCcCCCCCCCCCCCcccceeecC
Confidence 654 3468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHhhceEEeecCeeecCCCceEEEEecCCCCCceeeec-cccccc
Q 000235 816 LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES-QTLDSL 894 (1815)
Q Consensus 816 L~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g~iiQF~YGeDg~d~~~~e~-~~~~~~ 894 (1815)
+.|||||||||||||||||||||||+||||||||||+||+++|+||.||||+||+||||+|||||||..+-.. +++.+.
T Consensus 962 i~PqeyfFHCMAGREGLIDTAVKTSRSGYLQRCLiKhLEgl~V~YD~TVRDsDgsvVQF~YGEDglDitKssfl~~~~f~ 1041 (1640)
T KOG0262|consen 962 IKPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLKVHYDLTVRDSDGSVVQFMYGEDGLDITKSSFLNKKEFP 1041 (1640)
T ss_pred CCchHHhhhhhccccchhhhHHhcccchHHHHHHHHhhhhcEEeccceEEcCCCcEEEEeecCccccccHHhhcchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975321 112222
Q ss_pred ccchHHHhhhhhhccccCCCCcccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-hHhhhccCCCCCCCccccHHHHH
Q 000235 895 KMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ-LATEIATSGDSSWPLPVNLKRLI 973 (1815)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~-l~~~~~~~~~~~~~~p~n~~r~i 973 (1815)
..|...+...++. ..+++. ..+... ...++.+++|+++ ++....
T Consensus 1042 ~~Ny~avl~~~~~-------------~~v~s~----~d~~~a-~~~~k~i~kw~kk~~w~~~~----------------- 1086 (1640)
T KOG0262|consen 1042 TDNYEAVLLKYKS-------------ESVLSA----FDIKKA-SKYIKKILKWKKKHMWFELD----------------- 1086 (1640)
T ss_pred hhhHHHHHhhhCh-------------HHHhhh----hhhHHH-HHHHHHHHHHHhhhccchhh-----------------
Confidence 2222222222211 111111 111111 1122333333222 111000
Q ss_pred HHhhhhcccCCCCCCCCChHHHHHHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHH
Q 000235 974 WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEW 1053 (1815)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~ 1053 (1815)
++. .+.........|..+++.|.+.+.+.+ +...++|+.. + ..+.-+.+.|..
T Consensus 1087 ---k~~-~cpdpv~~k~~p~~y~gsvsekf~~~i--------~~f~~~~~k~-~--------------~s~~~~~~~lr~ 1139 (1640)
T KOG0262|consen 1087 ---KKI-ACPDPVLAKYNPDKYLGSVSEKFRKKI--------DDFDDENAKK-E--------------KSEEPSEEKLRR 1139 (1640)
T ss_pred ---ccc-CCCChhhhhcchhhhhccccHHHHHHH--------HHHHHHhhhh-h--------------ccccchHHHHHH
Confidence 111 122223445677777777777655432 2223333221 1 001111334444
Q ss_pred HHHHHHHHhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhhc-ccCCCCceEEEeCCC
Q 000235 1054 VIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIKTPSLSVFLKPG 1132 (1815)
Q Consensus 1054 ~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~a-k~ikTP~mtv~l~~~ 1132 (1815)
+ +..||++||++|||+||+|||||||||+||||||||||||+|+|||||||||||||||+| +|||||+|||++.++
T Consensus 1140 l---l~~K~~~SLa~PGE~VGvlAAQSIGEPSTQMTLNTFHfAGrGemNVTLGIPRLREIlMtASanIkTP~mt~pi~~g 1216 (1640)
T KOG0262|consen 1140 L---LQLKYIRSLADPGEPVGVLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASANIKTPSMTVPIKNG 1216 (1640)
T ss_pred H---HHHHHHHHhcCCCCcceeeeecccCCCcceeehhheeeccccceeeeecchHHHHHHHHHhhccCCCceeeeccCC
Confidence 4 479999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred CcchHHHHHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEEEEech-hhh-h
Q 000235 1133 VNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNR-EMM-V 1210 (1815)
Q Consensus 1133 ~~~~~~~a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~-~~~-~ 1210 (1815)
.. .++|..++..|.+++|++|++++.+... .+ ..+... ...+.+|+.|.. +.. .
T Consensus 1217 ~s--~~ra~~i~~~l~rV~L~evlk~v~vte~----~t-~~~~~~-----------------~~~y~lr~~~~~~~~y~~ 1272 (1640)
T KOG0262|consen 1217 VS--DERADDITKELRRVTLKEVLKKVGVTEK----IT-MVENQS-----------------CKKYKLRFDLLPREEYQE 1272 (1640)
T ss_pred cc--HHHHHHHHHHHHHHHHHHHHhheeeeEE----EE-eecccc-----------------ceEEEEEEeecCHHHhhh
Confidence 64 4889999999999999999998776421 01 111100 112334444321 111 1
Q ss_pred cccCCHHHHHHHHhhh---------------------cC-----CC----------ceee--------ecCCCcc----c
Q 000235 1211 DKKLSMAAVAEKINQE---------------------FD-----DD----------LTCI--------FNDDNAD----K 1242 (1815)
Q Consensus 1211 ~~~l~~~~i~~~i~~~---------------------~~-----~~----------~~~~--------~~~dn~~----~ 1242 (1815)
++.+..++|.+-+... .. .+ +... ..+++.+ +
T Consensus 1273 e~~v~~e~i~~~m~~~Flk~L~~aI~k~~~k~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ddddas~ 1352 (1640)
T KOG0262|consen 1273 EYDVRPEDIEEVMENRFLKLLERAIKKKLKKAKYTRGMSNDDADPDDGNEVDNNDEVGGEDNEDSDDESEDDEDDDDASD 1352 (1640)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccccCCccccccCCccccccCCccccccccccccCcccchhH
Confidence 2233333332211100 00 00 0000 0000001 0
Q ss_pred eEEEEEEcc----CCCCC----------C--CCC---CC-cch----------------------h--------HHHHHH
Q 000235 1243 LILRIRIMN----DEAPK----------G--ELN---DE-SAE----------------------D--------DVFLKK 1272 (1815)
Q Consensus 1243 ~~~~ir~~~----~~~~~----------~--~~~---~~-~~~----------------------~--------~~~l~~ 1272 (1815)
..++-|... +++++ + ++| ++ |.+ . ..|++.
T Consensus 1353 ~k~~~k~~~~~dYe~~de~e~~~~~~~e~~~~~e~~e~d~e~g~dg~~~~~~~~~e~~~~~~~~er~~qs~~~~~~fi~~ 1432 (1640)
T KOG0262|consen 1353 AKLHKKTEEEADYESEDEDERVEEREDEGDEDEESDEDDEEVGLDGTPEPEEEDQEGQPEVNAVERREQSVKKRHDFISR 1432 (1640)
T ss_pred HHHhhhhccccCcCCCchhhhhhhhhcccccccccccchhhcccCCCCCcccccccCCchhhHHHHHHHHHHHHHHHhhh
Confidence 111111111 00000 0 000 00 000 0 001110
Q ss_pred H----Hhhccc--------------------------------------------------cceecccchhhhhcc-ccc
Q 000235 1273 I----ESNMLT--------------------------------------------------EMALRGVNLLAVMCH-EDV 1297 (1815)
Q Consensus 1273 ~----~~~~l~--------------------------------------------------~~~~~G~nl~~vl~~-~~v 1297 (1815)
. +...|. -+.++|+||.++|.+ +.+
T Consensus 1433 y~fd~~~~~wcev~~~lp~~~~k~~mssiVe~~~~~~vI~q~~gIeRc~~~~~~~~~k~~~~l~TeGVnl~a~~~~~d~L 1512 (1640)
T KOG0262|consen 1433 YTFDKESGKWCEVELKLPLDKEKLDMSSIVESIAPKSVIHQVPGIERCVVSEPQDDVKEKSVLLTEGVNLPALFDHADIL 1512 (1640)
T ss_pred hccccccCcEEEEEEEecCCCcchHHHHHHHHHhcceeeeccCCceeeeccCCcccccccceehhcCccHHHHHHHHhhh
Confidence 0 000000 134567999999996 568
Q ss_pred cccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCccccccch
Q 000235 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377 (1815)
Q Consensus 1298 D~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSF 1377 (1815)
|.+++|||||++|+++|||||||++|++||.+||+.|||+||.|||+||||||||+|.|.++||+|| ..++|||+||||
T Consensus 1513 Dv~~lySNDI~ail~tyGVEAar~~Iv~Ev~~VF~vYGIsVd~RHLsLiADYMTf~G~y~pfnR~Gm-~~ssSP~qkMsF 1591 (1640)
T KOG0262|consen 1513 DVNRLYSNDIHAILNTYGVEAARNAIVNEVNNVFKVYGISVDIRHLSLIADYMTFEGGYQPFNRMGM-ESSSSPLQKMSF 1591 (1640)
T ss_pred hhhhhccchHHHHHHHhhHHHHHHHHHHHHHHhhhheeeeecHHHHHHHHHHHhhcccccccccccc-ccCCChhHhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 558999999999
Q ss_pred HHHHHHHHHHHhhcCcccccccccccccCCccccCccceeeccchh
Q 000235 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423 (1815)
Q Consensus 1378 EeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fdll~~~~ 1423 (1815)
|+|+.||.+||.+|+.|+|.++|++|+||+++..|||+|||+.+..
T Consensus 1592 ETt~~Fl~~Aa~~g~~D~L~sPSArLvvG~~~r~GTG~Fdll~~v~ 1637 (1640)
T KOG0262|consen 1592 ETTCQFLKQAALFGEEDELSSPSARLVVGLPVRGGTGSFDLLQKVD 1637 (1640)
T ss_pred HHHHHHHHHHHhcCcccccCCCcceeEeccccCCCcceeeeeccCC
Confidence 9999999999999999999999999999999999999999998754
|
|
| >TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A' | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-231 Score=2235.49 Aligned_cols=837 Identities=48% Similarity=0.849 Sum_probs=784.6
Q ss_pred cccceEEEEcCCHHHHHhcceeEEeeCccccCC-CCCCCCCCCCCCCCcCCCccccccccCCCCcCCccceeeccccccc
Q 000235 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFH 91 (1815)
Q Consensus 13 ~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~-~p~~gGl~D~rlG~~~~~~~C~TCg~~~~~CpGHfGhIeL~~PV~h 91 (1815)
++|++|+|+++|+|||+++||+||+++++||.. +|+.|||||||||+++++..|+|||++..+||||||||||++||||
T Consensus 2 ~~I~~I~F~~~S~eEI~k~Sv~~It~~~~~d~~g~P~~gGL~D~RLG~~~~~~~C~TCg~~~~~CpGHFGhIeL~~PVfh 81 (868)
T TIGR02390 2 KKIGSIKFGLLSPEEIRKMSVVEVVTADTYDDDGYPIEGGLMDPRLGVIEPGLRCKTCGGKVGECPGHFGHIELARPVVH 81 (868)
T ss_pred ceeeEEEEeCCCHHHHHHhCeeEEecccccCCCCCcCCCCccCcccCCCCCCCCCCCCCCCCCcCCCcceEEeccccccc
Confidence 579999999999999999999999999999865 9999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHhcccceecceeccCCchH-HHHHHHH-hcC----h-HHHHHHHHHHhhhccccCCCCCCCCCCCCCCccc
Q 000235 92 IGFMKTVLSIMRSVCFNCSKILADEDDH-KFKQALK-IRN----P-KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL 164 (1815)
Q Consensus 92 ~~f~~~v~~iL~~vC~~C~~l~~~~~~~-~~~~~~~-~~~----~-~~~~~~i~~~~~~~~~C~~~~~~~~~~~~~~~~~ 164 (1815)
|+||+.|++||+|||++|++|++++.+. .+.+.++ ++. . +++++++++.|++.+.|.
T Consensus 82 pgf~~~i~kiL~~vC~~C~rll~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~C~---------------- 145 (868)
T TIGR02390 82 VGFAKEIYKILRATCRKCGRITLTEEEIEQYLEKINKLKEEGGDLASTLIEKIVKEAAKRMKCP---------------- 145 (868)
T ss_pred hhHHHHHHHHHHHHhhhcCceeeCccccHHHHHHHHhcccchhhhHHHHHHHHHHHhhcCCCCC----------------
Confidence 9999999999999999999999986543 3443332 222 1 345677777777666675
Q ss_pred ccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHHhhcChhhHHHhcCCCCCCCccce
Q 000235 165 KKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244 (1815)
Q Consensus 165 ~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~~~~~~~~Pe~~ 244 (1815)
+||+.+|+|++++...+ +... . ..++.|+|++|++||++||++|+++||+++..++||||
T Consensus 146 -----~Cg~~~p~ir~~~~~~~--~~~~-------~------~~~~~L~p~~v~~ilk~I~~eD~~lLG~~p~~~~Pe~~ 205 (868)
T TIGR02390 146 -----HCGEEQKKIKFEKPTYF--YEEG-------K------EGDVKLTPSEIRERLEKIPDEDAELLGINPKVARPEWM 205 (868)
T ss_pred -----CCCCcCceEEEeeeeee--eecc-------C------CCCeecCHHHHHHHHHhCCHHHHHHhCCCCCCCCccee
Confidence 49999999998764321 1100 0 12567999999999999999999999999999999999
Q ss_pred EEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHhhccCCCCCCCcc
Q 000235 245 ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314 (1815)
Q Consensus 245 il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~LQ~~V~~~~dn~~~~~p~~ 314 (1815)
||++|||||+++||+ ||||++|++||++|++|++.++.|++.+++.+.|++||.+|++||||+++|.+.+
T Consensus 206 ilt~LPVPP~~iRPsv~~~~g~~~EDDLT~~L~~II~~N~~Lk~~~~~g~~~~~~~~~~~~LQ~~v~~~~d~~~~~~~~~ 285 (868)
T TIGR02390 206 VLTVLPVPPVTVRPSITLETGERSEDDLTHKLVDIIRINQRLKENIEAGAPQLIIEDLWELLQYHVATYFDNELPGIPPA 285 (868)
T ss_pred eEeccccCCCCCcCeEEeCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHcCCCCCCCcc
Confidence 999999999999998 8999999999999999999999999999999999999999999999999998888
Q ss_pred cccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccchhHHHHHHHHHHc
Q 000235 315 TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEY 394 (1815)
Q Consensus 315 ~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~~Ni~~l~~lv~n 394 (1815)
++++++|+|||+|||||||||||+|||||||||||||||+|||||++||||||+.||++|||||+||+||+++|++||+|
T Consensus 286 ~~~~~~~~~~i~~~l~gK~G~~R~nl~GKRvd~s~RsVI~pdp~l~~~evGvP~~~A~~Lt~pe~Vt~~N~~~l~~lv~n 365 (868)
T TIGR02390 286 RHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPNISINEVGVPEQIAKELTVPERVTPWNIDELREYVLN 365 (868)
T ss_pred ccCCCCCchhhHhhhcccccccccccccccccccCCceeeCCCCCcCCeeeCcHHHHHhCCCCeEEehhhHHHHHHHHHc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccEEEeCCCceeeccccccc-cccccccccEeeeecccCCeEEEecCCccccccccceeEEeecCCeeee
Q 000235 395 GPHPPPGKTGAKYIIRDDGQRLDLRYLKKS-SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473 (1815)
Q Consensus 395 g~~~~pg~~~A~~i~~~~g~~~~l~~~~~~-~~~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk~Simah~vkv~~~~t~rl 473 (1815)
||+.||| |+||++.+|.+++|++.++. ....|++||+|||||+|||+|||||||||||||||||+|||++|+||||
T Consensus 366 g~~~~pg---a~~i~~~~g~~~~l~~~~~~~~~~~l~~g~~v~rhl~dgd~vl~NRqPsLHr~si~a~~~~v~~~~t~r~ 442 (868)
T TIGR02390 366 GPDSWPG---ANYVIRPDGRRIKIRDENKEELAERLEPGWVVERHLIDGDIVLFNRQPSLHRMSMMGHKVKVLPGKTFRL 442 (868)
T ss_pred CCccCCC---ceEEEcCCCcEEechhhhHHHHHhhcccCCEEEEehhcCccceeccCCccccccceeEEEEEecCceEee
Confidence 9999999 99999999999999987643 3456899999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccccccccceecccCCCccCHHHHHHHH
Q 000235 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553 (1815)
Q Consensus 474 n~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l~g~~~lT~~d~f~~~~~~~~l~ 553 (1815)
||+||+||||||||||||+|||||++|||||++||++.+||++|++|+|++|++||+|+|+|+||++|+||+++|+++++
T Consensus 443 n~~~c~~~NADFDGDeMn~h~Pqs~~a~aEa~~Lm~~~~~~~sp~~g~p~~~~~QD~l~g~~~LT~~d~f~~~~~~~~l~ 522 (868)
T TIGR02390 443 NLAVCPPYNADFDGDEMNLHVPQTEEARAEARELMLVEEHILTPRYGGPIIGGIHDYISGAYLLTHKSTLFTKEEVQTIL 522 (868)
T ss_pred ccccCCccccCcccceeeEecCCCHHHHHHHHHHhhchhceecCCCCCeeEEeehhhhhheeeeeeccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCcccCccCCcchHHHHHHhcCCCceEeeecccCCCC--CCCcCCCCCcEEEEecCeeeeccccccccc
Q 000235 554 MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN--DKGILTAGDTLVRIEKGELLSGTLCKKTLG 631 (1815)
Q Consensus 554 ~~~~~~~~~~~~pai~kp~~lwtGKqi~s~~lp~~in~~~~~~~~~~~--~~~~~~~~d~~v~i~~gell~g~ldK~~~g 631 (1815)
++. .|...+|+|||+||++|||||||||++||.++||..++++.... ...+.+.+|+.|+|+||||++|+|||++||
T Consensus 523 ~~~-~~~~~~~~p~i~kp~~lwTGKqi~s~~lp~~~n~~~~~~~~~~~~~~~~~~~~~d~~v~i~~g~ll~G~ldK~~lg 601 (868)
T TIGR02390 523 GVA-GYFGDPPEPAIEKPKEYWTGKQIFSAFLPEDLNFEGRAKICSGSDACKKEECPHDAYVVIKNGKLLKGVIDKKAIG 601 (868)
T ss_pred hcC-CccccCCCceecCCcccccHHHHHHHhcCCCCcceecccccccccccccccCCCcceEEEecCeEEeeeecHHHhc
Confidence 864 56777899999999999999999999999999999876654321 123457889999999999999999999999
Q ss_pred CCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCccChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 000235 632 TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711 (1815)
Q Consensus 632 ~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~ 711 (1815)
++.+||||.+|++||+++|++||+++|+|+++||+++||||||+|+++++++.++++++|++++++++++++.+++|.++
T Consensus 602 ~~~~~li~~i~~~yG~~~a~~fl~~~~~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~l~ 681 (868)
T TIGR02390 602 AEKGKILHRIVREYGPEAARRFLDSVTRLFIRFITLRGFTTGIDDIDIPKEAKEEIEELIEKAEKRVDNLIERYRNGELE 681 (868)
T ss_pred cCcccHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhccEEeehhheeeCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHhcCCCCcccchhhhhhhccccccCCCccCCCCCCCC
Q 000235 712 PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791 (1815)
Q Consensus 712 ~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~~eG~Rip~~~~~rt 791 (1815)
..+|+++.+++|..++++|+++++.+++.+.+.++++|++++|+.||||||.+|++||+||||||+++|+|||+||++||
T Consensus 682 ~~~~~~~~~~~e~~i~~~l~~~r~~~~~~~~~~l~~~N~~~~M~~sGsKGS~~Ni~Qi~~~lGQQ~~~g~ri~~~~~~rt 761 (868)
T TIGR02390 682 PLPGRTVEETLEMKIMEVLGKARDEAGEVAEKYLDPENHAVIMARTGARGSLLNITQMAAMVGQQSVRGGRIRRGYRNRT 761 (868)
T ss_pred cCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhhccCCcccccHHHHHhccCccccCCCcCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHhhceEEeecCeeecCCCce
Q 000235 792 LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871 (1815)
Q Consensus 792 Lp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g~i 871 (1815)
||||.++|.+++|+|||.|||++||+|+|||||||||||||||||||||+||||||||||+||||+|+|||||||++|+|
T Consensus 762 lp~f~~~d~~~~~~GfV~~sF~~GL~p~EfFfH~m~gReGLiDTAvKTa~sGYLqRrLvk~lEdl~v~yD~tVR~~~g~i 841 (868)
T TIGR02390 762 LPHFKKGDIGAKARGFVRSSFKKGLDPTEYFFHAAGGREGLVDTAVRTSQSGYMQRRLINALQDLYVEYDGTVRDTRGNL 841 (868)
T ss_pred CCCCCCCCCCcccCceecccccCCCCHHHHHHHHhhhccccccccccccccchhHHHHHHHHhheEEecCCeEEeCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCceeeecc
Q 000235 872 IQFLYGEDGMDSVWIESQ 889 (1815)
Q Consensus 872 iQF~YGeDg~d~~~~e~~ 889 (1815)
|||+|||||+||+++|.+
T Consensus 842 iQf~YG~dg~d~~~~~~~ 859 (868)
T TIGR02390 842 IQFKYGEDGVDPMKSDHG 859 (868)
T ss_pred EEEeccCCCcCHHHhccC
Confidence 999999999999998854
|
This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein. |
| >PRK08566 DNA-directed RNA polymerase subunit A'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-230 Score=2232.09 Aligned_cols=840 Identities=48% Similarity=0.821 Sum_probs=787.1
Q ss_pred cccccceEEEEcCCHHHHHhcceeEEeeCccccCC-CCCCCCCCCCCCCCcCCCccccccccCCCCcCCccceeeccccc
Q 000235 11 EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPM 89 (1815)
Q Consensus 11 ~~~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~-~p~~gGl~D~rlG~~~~~~~C~TCg~~~~~CpGHfGhIeL~~PV 89 (1815)
+.++|++|+|+++|+|||++|||+||+++++||.. +|+.|||+|||||+++++..|+|||++..+||||||||||++||
T Consensus 5 ~~~~I~~I~F~~~S~eEI~klSv~~It~~~~~d~~g~P~~gGL~D~RLG~~~~~~~C~TCg~~~~~CPGHFGhIeL~~PV 84 (882)
T PRK08566 5 IPKRIGSIKFGLLSPEEIRKMSVTKIITADTYDDDGYPIDGGLMDPRLGVIDPGLRCKTCGGRAGECPGHFGHIELARPV 84 (882)
T ss_pred CceeeeeEEEecCCHHHHHHhCeEEEecccccCCCCCcCCCCCCCcccCCCCCCCCCCCCCCCCCcCCCcceEEeccccc
Confidence 45789999999999999999999999999999865 99999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHhcccceecceeccCCchHH-HHHHHHhc-----ChHHHHHHHHHHhhhccccCCCCCCCCCCCCCCcc
Q 000235 90 FHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIR-----NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP 163 (1815)
Q Consensus 90 ~h~~f~~~v~~iL~~vC~~C~~l~~~~~~~~-~~~~~~~~-----~~~~~~~~i~~~~~~~~~C~~~~~~~~~~~~~~~~ 163 (1815)
|||+||+.|++||+|+|++|++|++++.+.. +...++.. ..+.+++++++.|++++.|.+
T Consensus 85 fhpgf~~~v~~iL~~iC~~C~rll~~~~~~~~~~~~l~~~~~~~~~~~~l~k~i~k~~k~~~~C~~-------------- 150 (882)
T PRK08566 85 IHVGFAKLIYKLLRATCRECGRLKLTEEEIEEYLEKLERLKEWGSLADDLIKEVKKEAAKRMVCPH-------------- 150 (882)
T ss_pred cchhHHHHHHHHHHHhhhhhCceeccccchHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCC--------------
Confidence 9999999999999999999999999876543 33333321 123567788888887777764
Q ss_pred cccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHHhhcChhhHHHhcCCCCCCCccc
Q 000235 164 LKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243 (1815)
Q Consensus 164 ~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~~~~~~~~Pe~ 243 (1815)
||+.+++|++++...+... . . ..++.|+|++|+++|++||++|+++||+++...+|+|
T Consensus 151 -------Cg~~~~ki~~~~~~~~~~~--~-------~------~~~~~L~p~~V~~ilk~I~~eD~~lLg~~~~~~~Pe~ 208 (882)
T PRK08566 151 -------CGEKQYKIKFEKPTTFYEE--R-------K------EGLVKLTPSDIRERLEKIPDEDLELLGINPEVARPEW 208 (882)
T ss_pred -------cCCCCceEEEecceeEEEe--c-------C------CCceeCCHHHHHHHHHhCCHHHHHHhCCCCCCCCcce
Confidence 9999999998764322111 0 0 1356899999999999999999999999999999999
Q ss_pred eEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHhhccCCCCCCCc
Q 000235 244 MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313 (1815)
Q Consensus 244 ~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~LQ~~V~~~~dn~~~~~p~ 313 (1815)
|||++|||||+++||+ ||||++|++||++|++|++.++.|++.+++.+.|+.||++|++||||++.|.+.
T Consensus 209 ~il~~lPVpP~~iRPsv~~~~g~~~eDDLT~~L~~II~~N~~Lk~~~~~g~~~~~~~~~~~~LQ~~v~~~~d~~~~~~~~ 288 (882)
T PRK08566 209 MVLTVLPVPPVTVRPSITLETGQRSEDDLTHKLVDIIRINQRLKENIEAGAPQLIIEDLWELLQYHVTTYFDNEIPGIPP 288 (882)
T ss_pred eEEeeeecCCCCCcCcEEeCCCcccCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCccCCcc
Confidence 9999999999999997 999999999999999999999999999999999999999999999999999887
Q ss_pred ccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccchhHHHHHHHHHH
Q 000235 314 ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE 393 (1815)
Q Consensus 314 ~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~~Ni~~l~~lv~ 393 (1815)
+.+++++|+|||+|||||||||||+|||||||||||||||+|||||++||||||..||++|||||+||+|||++|++||.
T Consensus 289 ~~~~~~~~~~~i~~~l~gK~G~fR~nl~GKRvd~s~RsVI~pdp~l~~~evGvP~~~A~~Lt~pe~v~~~N~~~l~~~v~ 368 (882)
T PRK08566 289 ARHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPNLSINEVGVPEAIAKELTVPERVTEWNIEELREYVL 368 (882)
T ss_pred cccCCCCCccchHHhcccCCCccccccccccccCcCCceeeCCCCCcCCeeeCcHHHHHhCCCCeEEchhhHHHHHHHHH
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccEEEeCCCceeecccccccc-ccccccccEeeeecccCCeEEEecCCccccccccceeEEeecCCeee
Q 000235 394 YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472 (1815)
Q Consensus 394 ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~-~~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk~Simah~vkv~~~~t~r 472 (1815)
|||+.||| |+||++.+|++++|.+.++.. ...|++||+|||||+|||+|||||||||||||||||+|||++++|||
T Consensus 369 ng~~~~pg---a~~i~~~~g~~~~l~~~~~~~~~~~l~~g~~v~Rhl~dgd~vl~NRqPsLHr~si~a~~~~v~~~~t~r 445 (882)
T PRK08566 369 NGPEKHPG---ANYVIRPDGRRIKLTDKNKEELAEKLEPGWIVERHLIDGDIVLFNRQPSLHRMSIMAHRVRVLPGKTFR 445 (882)
T ss_pred cCCCcCCC---ceEEEcCCCceeeehhhhHHHHHHhccccceehhhhhcCceeeecCCCcccccccceeEEEEecCceEe
Confidence 99999999 999999999999996544322 34689999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccccccccceecccCCCccCHHHHHHH
Q 000235 473 LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552 (1815)
Q Consensus 473 ln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l~g~~~lT~~d~f~~~~~~~~l 552 (1815)
|||+||+||||||||||||+|||||++||||+++||++++||++|++|+|++|++||+|+|+|+||++|+||+++|+++|
T Consensus 446 ~n~~~c~~~NADFDGDeMn~h~Pqs~~a~aEa~~Lm~~~~~~~sp~~g~pi~~~~QD~l~g~~~lt~~d~f~~~~~~~~l 525 (882)
T PRK08566 446 LNLAVCPPYNADFDGDEMNLHVPQTEEARAEARILMLVQEHILSPRYGGPIIGGIQDHISGAYLLTRKSTLFTKEEALDL 525 (882)
T ss_pred eccccCCCccCCccCcEEEEecCCCHHHHHHHHHHhcchhcEecCCCCCeeEEeehHHHHHHHHHHhccccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCCcccCccCCcchHHHHHHhcCCCceEeeecccCCCC--CCCcCCCCCcEEEEecCeeeecccccccc
Q 000235 553 LMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN--DKGILTAGDTLVRIEKGELLSGTLCKKTL 630 (1815)
Q Consensus 553 ~~~~~~~~~~~~~pai~kp~~lwtGKqi~s~~lp~~in~~~~~~~~~~~--~~~~~~~~d~~v~i~~gell~g~ldK~~~ 630 (1815)
+++...+...+|+|||+||++|||||||||++||.++||..+.+++.+. ...+++.+|+.|+|+||||++|+|||++|
T Consensus 526 ~~~~~~~~~~~~~pai~~p~~lwTGKqi~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~~gell~g~ldK~~l 605 (882)
T PRK08566 526 LRAAGIDELPEPEPAIENGKPYWTGKQIFSLFLPKDLNLEFKAKICSGCDECKKEDCEHDAYVVIKNGKLLEGVIDKKAI 605 (882)
T ss_pred HHhCCccccccCCcccCCCcccccHHHHHHHHcCCCCCceeeccccccccccccccCCCCceEEEecCEEEeccccHHHh
Confidence 9998766667899999999999999999999999999999776544321 12345778999999999999999999999
Q ss_pred cCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCccChhhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 000235 631 GTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710 (1815)
Q Consensus 631 g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l 710 (1815)
|++.+||||.||++||+++|.+||+.+|+|+++||+.+||||||+|++++++..++++++|+++++.++++++++.+|++
T Consensus 606 g~~~~~li~~i~~~yG~~~a~~fl~~~~~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~l 685 (882)
T PRK08566 606 GAEQGSILDRIVKEYGPERARRFLDSVTRLAIRFIMLRGFTTGIDDEDIPEEAKEEIDEIIEEAEKRVEELIEAYENGEL 685 (882)
T ss_pred hcccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCEEeehhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHhcCCCCcccchhhhhhhccccccCCCccCCCCCCC
Q 000235 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790 (1815)
Q Consensus 711 ~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~~eG~Rip~~~~~r 790 (1815)
+..+|+++.+.+|.+++++|+++|+.+++.+.+.++++|++++|+.||||||++|++||+||||||+++|+|||+||++|
T Consensus 686 ~~~~~~~~~~~~e~~i~~~l~~~r~~~~~~~~~~l~~~N~~~~M~~SGsKGS~~N~~Qi~~~lGqQ~~~g~ri~~~~~~r 765 (882)
T PRK08566 686 EPLPGRTLEETLEMKIMQVLGKARDEAGEIAEKYLGLDNPAVIMARTGARGSMLNLTQMAACVGQQSVRGERIRRGYRDR 765 (882)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeeccccccCHHHHHHHHhccCceecCCCcCccCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHhhceEEeecCeeecCCCc
Q 000235 791 TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD 870 (1815)
Q Consensus 791 tLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g~ 870 (1815)
|||||.++|.+|+++|||.|||++||+|+|||||||||||||||||||||+||||||||||+||||+|+|||||||++|+
T Consensus 766 tLP~f~~~d~~~~~~GfV~~sF~~GL~p~EfffH~m~GReGliDTAvkTa~sGYlqRrLvk~ledl~v~yD~tVR~s~g~ 845 (882)
T PRK08566 766 TLPHFKPGDLGAEARGFVRSSYKSGLTPTEFFFHAMGGREGLVDTAVRTSQSGYMQRRLINALQDLKVEYDGTVRDTRGN 845 (882)
T ss_pred cCCCCCCCCCCcccCceeeccccCCCCHHHHHHHHhhhcccccccceeeccCccchHHHHHHHhheEEeeCCceEcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCceeeecc
Q 000235 871 VIQFLYGEDGMDSVWIESQ 889 (1815)
Q Consensus 871 iiQF~YGeDg~d~~~~e~~ 889 (1815)
||||+||||||||+++|.+
T Consensus 846 iiQf~YG~dg~d~~~~~~~ 864 (882)
T PRK08566 846 IVQFKYGEDGVDPMKSDHG 864 (882)
T ss_pred EEEEeccCCCcCHHHhcCC
Confidence 9999999999999998754
|
|
| >TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit, predominant form | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-212 Score=2031.35 Aligned_cols=1033 Identities=28% Similarity=0.454 Sum_probs=816.0
Q ss_pred eEEEEcCCHHHHHhcceeEEeeCccccCC--CCCCCCCCCCCC-CCc--------------CCCccccccccCCCCcC--
Q 000235 17 MVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTI--------------DRKMKCETCTANMAECP-- 77 (1815)
Q Consensus 17 ~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~--~p~~gGl~D~rl-G~~--------------~~~~~C~TCg~~~~~Cp-- 77 (1815)
+|+|+++|||+|++||++||++|+|++++ +|+.+||||+|+ |++ ++...|++||.++.+|+
T Consensus 1 ~i~i~laSPe~I~~ws~geV~~petiny~t~kPe~~GLfcerIFGp~k~~ec~Cgkyk~~~~~~~~C~~Cgve~t~~~vr 80 (1140)
T TIGR02386 1 AIKISIASPDTIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECYCGKYKKIRYKGVVCERCGVEVTESKVR 80 (1140)
T ss_pred CeEEEecCHHHHHhhhceEEeccceecCCCCccCCCCcccchhcCCccCceeccccccccCcCCcCCCCCCCCcccchhh
Confidence 48999999999999999999999999997 999999999999 876 45568999999999998
Q ss_pred -CccceeeccccccchhhhhH-----------HHHHhcccceecceeccCCchHHHHHHHHhcChHHHHHHHHHHhhhcc
Q 000235 78 -GHFGHLELAKPMFHIGFMKT-----------VLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKT 145 (1815)
Q Consensus 78 -GHfGhIeL~~PV~h~~f~~~-----------v~~iL~~vC~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 145 (1815)
+||||||||.||+|+||++. ..|.|++||++|+++.+++.+..++...-+.. ..+.++.+. ..
T Consensus 81 r~rmGhI~La~Pv~Hiwy~k~~ps~~~~ll~~~~k~le~v~y~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~---~~ 155 (1140)
T TIGR02386 81 RERMGHIELAAPVAHIWYFKGLPSRIGLLLDITAKELESVLYFENYVVLDPGDTKLDKKEVLDE--TEYREVLKR---YG 155 (1140)
T ss_pred hhcccceeecCCceeehhcCCCchHHHHHhCCCHHHhhheeeccceEEeCCCCCchhhhhhhch--hHHHHHHHH---hc
Confidence 99999999999999999997 48999999999999999876554332211111 112222221 10
Q ss_pred ccCCCCCCCCCCCCCCcccccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHHhhcC
Q 000235 146 KCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRIS 225 (1815)
Q Consensus 146 ~C~~~~~~~~~~~~~~~~~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~ilk~i~ 225 (1815)
. ....+||+.+.+....++++..+++..+++...... ....++.+...++.+.|++
T Consensus 156 ~-------------------~~~~~~G~~ai~~~l~~~dl~~~~~~~~~~~~~~~~---~~~~~~~~krl~~~~~f~~-- 211 (1140)
T TIGR02386 156 D-------------------GFRAGMGAEAIKELLEKIDLDKEIEELKIQLRESKS---DQKRKKLLKRLEIVEAFKD-- 211 (1140)
T ss_pred c-------------------CcccccchHHHHHHHhcCCHHHHHHHHHHHHHhccc---hhhHHhhhhHHHHHHHHHh--
Confidence 0 013579999999999999988887665443221110 0011334455555555553
Q ss_pred hhhHHHhcCCCCCCCccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Q 000235 226 DEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295 (1815)
Q Consensus 226 ~~d~~~l~~~~~~~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~ 295 (1815)
..+|||||||++||||||++||+ ||||++|++||++|++|+++++.++|..++.+.|++
T Consensus 212 -----------s~~~Pewmil~~lPV~Pp~lRP~v~l~gg~~~~sDLn~lyr~II~~Nn~Lk~~~~~~ap~~ii~~~~~~ 280 (1140)
T TIGR02386 212 -----------SGNRPEWMVLDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIVRNEKRM 280 (1140)
T ss_pred -----------cCCChHHhhhhcccCCCCccCCcEEeCCCccccCchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 35899999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhcc
Q 000235 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375 (1815)
Q Consensus 296 LQ~~V~~~~dn~~~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT 375 (1815)
||++|++||||++.|.|. ..+++||+|||+||||||+||||+|||||||||||||||+|||+|++||||||+.||++||
T Consensus 281 LQ~aV~~liDn~~~g~~~-~~~~~rplksls~~LkGK~GrFR~NLlGKRVDySgRSVI~pdP~L~l~e~GlP~~mA~~L~ 359 (1140)
T TIGR02386 281 LQEAVDALFDNGRRGKPV-VGKNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKKMALELF 359 (1140)
T ss_pred HHHHHHHHhcccccCCCc-cCcCCCchhhHHHhhcCCCCcccccccccccCCCCCCeEcCCCCcccccccChHHHHHHcC
Confidence 999999999999999875 4557899999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccchhHHHHHHHHHHcCCCCCCCcccccEEEeCCCceeeccccccccccccccccEeeeecccCCeEEEecCCcccc
Q 000235 376 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455 (1815)
Q Consensus 376 ~PE~Vt~~Ni~~l~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk 455 (1815)
+| ||+++|++ +|... .++..++.-.......|.|.||+++||+|||||||||||
T Consensus 360 ~P-----f~i~~L~~---~~~~~------------------~i~~ak~~i~~~~~~v~~vl~~vi~~d~VLlNRqPTLHR 413 (1140)
T TIGR02386 360 KP-----FIIKRLID---RELAA------------------NIKSAKKMIEQEDPEVWDVLEDVIKEHPVLLNRAPTLHR 413 (1140)
T ss_pred ch-----HHHHHHHH---cCccc------------------chHHHHHHHHhcCCccceEEEEccCCcEEEecCCCcccc
Confidence 65 88877754 44311 111111110111235688899999999999999999999
Q ss_pred ccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccccccccce
Q 000235 456 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535 (1815)
Q Consensus 456 ~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l~g~~ 535 (1815)
||||||+|||++++||||||+||+||||||||||||||||||++||||+++||++++||+||++|+|+++++||+|+|+|
T Consensus 414 lsIqAf~~~l~~gktirlhplvC~~fNADFDGDeMnvHvPqS~eA~aEa~~Lm~~~~nilsP~~G~Pi~~~~QD~ilG~y 493 (1140)
T TIGR02386 414 LGIQAFEPVLVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSPEAQAEARALMLASNNILNPKDGKPIVTPSQDMVLGLY 493 (1140)
T ss_pred cccceeEEEEecCceEEEcccccCcccCCCCcceeEeecCCCHHHHHHHHHHhCCcccEecCCCCCceEEeechhhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCC--------CccCHHHHHHHHHhcccCCCCCCCCcccCc----cCCc--chHHHHHHhcCCCceEeeecccCCCC
Q 000235 536 KITKRD--------TFIEKDVFMNILMWWEDFDGKVPQPTILKP----RPLW--TGKQVFNLIIPKQINLFRTAAWHADN 601 (1815)
Q Consensus 536 ~lT~~d--------~f~~~~~~~~l~~~~~~~~~~~~~pai~kp----~~lw--tGKqi~s~~lp~~in~~~~~~~~~~~ 601 (1815)
+||.++ +|++++++++.+ +++.++.|+++++ +.+| +|||||+.+||.+++|..+
T Consensus 494 ~LT~~~~~~~~~~~~F~~~~e~~~~~-----~~~~i~l~~~i~~~~~g~~~~tt~Gr~if~~ilP~~~~~~n~------- 561 (1140)
T TIGR02386 494 YLTTEKPGAKGEGKIFSNVDEAIRAY-----DNGKVHLHALIGVRTSGEILETTVGRVIFNEILPEGFPYIND------- 561 (1140)
T ss_pred EeeeccccccCcCceeCCHHHHHHHH-----HcCCccCCCceEEeccccEEEccchHHHHHHHcCCccccccc-------
Confidence 999995 799999999753 3456666776653 4677 6999999999998877521
Q ss_pred CCCcCCCCCcEEEEecCeeeecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCccCh
Q 000235 602 DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 681 (1815)
Q Consensus 602 ~~~~~~~~d~~v~i~~gell~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~~~ 681 (1815)
. ++|||+.+| +|||.+|++||++.|.+|||++++|+++|++.+||||||+|+++++
T Consensus 562 -------~-------------~~l~Kk~lg----~LI~~i~~~~G~~~t~~~LD~lk~Lgf~~at~~GfSigi~Dl~ip~ 617 (1140)
T TIGR02386 562 -------N-------------EPLSKKEIS----SLIDLLYEVHGIEETAEMLDKIKALGFKYATKSGTTISASDIVVPD 617 (1140)
T ss_pred -------c-------------cccchHHHH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhcCeeeeeccCCCCH
Confidence 0 179999998 8999999999999999999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CChHHHHHhc
Q 000235 682 KTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSE----SNNLKAMVTA 757 (1815)
Q Consensus 682 ~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~----~N~~~~M~~s 757 (1815)
+ +.++|++|++++.+++++|++|.++. +.++.++.++|+++++++++.+++++.+ .|++++|+.|
T Consensus 618 ~----K~~ii~~a~~~v~~i~~~y~~G~lt~-------~er~~kvi~iw~~~~d~v~~~~~~~l~~~~~~~N~i~mMa~S 686 (1140)
T TIGR02386 618 E----KYEILKEADKEVAKIQKFYNKGLITD-------EERYRKVVSIWSETKDKVTDAMMKLLKKDTYKFNPIFMMADS 686 (1140)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHcCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcHhhhhhc
Confidence 5 57899999999999999999998863 4567899999999999999999999975 5999999999
Q ss_pred CCCCcccchhhhhhhccccccCCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhcc
Q 000235 758 GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837 (1815)
Q Consensus 758 GsKGS~~N~~Qi~~~lGQQ~~eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAv 837 (1815)
|||||.+|++||+||+|||. +|. ||++|+ +|.|||++||+|+|||||||||||||+||||
T Consensus 687 GARGS~~ni~QL~GmrGlma-----~p~---Grii~~------------PI~ssF~eGLtp~EyF~st~GaRkGLiDTAl 746 (1140)
T TIGR02386 687 GARGNISQFRQLAGMRGLMA-----KPS---GDIIEL------------PIKSSFREGLTVLEYFISTHGARKGLADTAL 746 (1140)
T ss_pred ccccCHHHHHHHHhCCCccc-----CCC---CCcccc------------chhhccccCCCHHHHhhhccchhccccchhe
Confidence 99999999999999999996 232 477775 4999999999999999999999999999999
Q ss_pred ccCCCchhHHHHHHHhhceEEeecCeeecCCCceEEEEecCCCCCceeeecccccccccchHHHhhhhhhccccCCCCcc
Q 000235 838 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPN 917 (1815)
Q Consensus 838 KTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1815)
|||+||||||||||++|||+|.||.+- ...|-.|+.+..++| ..++ .+.+..+.|....++.++..+.
T Consensus 747 KTAdSGYLtRRLVdv~qDviV~~dDCg-T~~gi~v~~~~~~~~---~~i~-------~l~~ri~GR~~~~di~~~~~~~- 814 (1140)
T TIGR02386 747 KTADSGYLTRRLVDVAQDVVVREEDCG-TEEGIEVEAIVEGKD---EIIE-------SLKDRIVGRYSAEDVYDPDTGK- 814 (1140)
T ss_pred eecccceeeeehhhhhcceEEEeCCCC-CCCCEEEEEeecCCc---eEEe-------ehhheeEEEEEhhheEeCCCCc-
Confidence 999999999999999999999999544 234667766653332 1111 1111112221111111111000
Q ss_pred cchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCChHHHHH
Q 000235 918 YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997 (1815)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p~~~~~ 997 (1815)
.+.. ....++. ++
T Consensus 815 ------------------------------------~i~~----------------------------~~~~i~~-~~-- 827 (1140)
T TIGR02386 815 ------------------------------------LIAE----------------------------ANTLITE-EI-- 827 (1140)
T ss_pred ------------------------------------EEEe----------------------------CCCCcCH-HH--
Confidence 0000 0011111 11
Q ss_pred HHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHh
Q 000235 998 AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077 (1815)
Q Consensus 998 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iA 1077 (1815)
++++ ....+-.+.+||.|+|+ ..+++|++||+|.|+ ...+|+.|||||+||
T Consensus 828 -----~~~i---------------~~~~i~~v~iRS~ltC~---s~~gvC~~CYG~~La------~~~~V~~GeaVGiiA 878 (1140)
T TIGR02386 828 -----AEKI---------------ENSGIEKVKVRSVLTCE---SEHGVCQKCYGRDLA------TGKLVEIGEAVGVIA 878 (1140)
T ss_pred -----HHHH---------------HHcCCCEEEecCCeeeC---CCCCCccccCCCccc------CCcEecccccceeEe
Confidence 1111 01123456789999998 589999999999986 789999999999999
Q ss_pred hhccCCcccccccccccccccccc--ccccccceeeeehhhcccCCCCceEEEeCCCCcchHHHHHHHHhhhcccccccc
Q 000235 1078 AQSIGEPATQMTLNTFHYAGVSAK--NVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSV 1155 (1815)
Q Consensus 1078 AQSIGEPaTQMTLnTFH~AGv~~~--NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv 1155 (1815)
|||||||+|||||+|||.+||++. +||.|+||+.||+++ +++|.+.+...+...+.
T Consensus 879 AQSIGEPGTQLTmRTFHtGGv~~~~~DIT~GlpRv~elfea-r~p~~~a~iae~~G~v~--------------------- 936 (1140)
T TIGR02386 879 AQSIGEPGTQLTMRTFHTGGVAGASGDITQGLPRVKELFEA-RTPKDKAVIAEVDGTVE--------------------- 936 (1140)
T ss_pred eeecCCCcchhehhheeeccccccccccccCchhhhhhhhc-ccCCCceEEEecCCEEE---------------------
Confidence 999999999999999999999975 999999999999996 55665544333222110
Q ss_pred ceeeEEEE-cCCCCceE-EEcccceeheeccCCCCcccccccCCcEEEEEechhhhhcccCCHHHHHHHHhhhcCCCcee
Q 000235 1156 TEATEVWY-DPDPMGTI-IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTC 1233 (1815)
Q Consensus 1156 ~~~~~i~y-dp~~~~~~-i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~ 1233 (1815)
+.- +......+ |..+.+-.. .|.+|..
T Consensus 937 -----~~~~~~~~~~~i~i~~~~~~~~-~y~ip~~--------------------------------------------- 965 (1140)
T TIGR02386 937 -----IIEDIVKNKRVVVIKDENDEEK-KYTIPFG--------------------------------------------- 965 (1140)
T ss_pred -----EeecccCCcEEEEEECCCCcee-EEeccCC---------------------------------------------
Confidence 000 00000000 110000000 0111100
Q ss_pred eecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccccceecccchhhhhccccccccccccccHHHHHHh
Q 000235 1234 IFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEV 1313 (1815)
Q Consensus 1234 ~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~G~nl~~vl~~~~vD~~rt~sNdI~eI~~v 1313 (1815)
.++++.+.+ .... .+.| ++| +-|++||+++
T Consensus 966 -----------~~l~v~~gd--~V~~---------------G~~l----~~g------------------~~~~~~il~v 995 (1140)
T TIGR02386 966 -----------AQLRVKDGD--SVSA---------------GDKL----TEG------------------SIDPHDLLRI 995 (1140)
T ss_pred -----------ceEEecCCC--EEcc---------------CCcc----cCC------------------CCCHHHHHHh
Confidence 011111100 0000 0011 133 5589999999
Q ss_pred hcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceec------------------------------------
Q 000235 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM------------------------------------ 1357 (1815)
Q Consensus 1314 lGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~------------------------------------ 1357 (1815)
+||||+|++|++||++||..||++||+|||++|+|+||.++++.
T Consensus 996 ~G~~a~~~~lv~evq~vY~~QGv~I~dKHievIvrqM~~kv~i~~~gdt~~l~g~~v~~~~~~~~n~~~~~~g~~~~~~~ 1075 (1140)
T TIGR02386 996 KGIQAVQEYLVKEVQKVYRLQGVEINDKHIEVIVRQMLRKVRITDSGDSNLLPGELIDIHEFNEENRKLLEQGKKPASAI 1075 (1140)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCccccchhHhHHHHHHhCcEEEEeCCCcCCCCCCeeeHHHHHHHHHHHHhCCCCCccce
Confidence 99999999999999999999999999999999999999997544
Q ss_pred ----ccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccce
Q 000235 1358 ----AITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416 (1815)
Q Consensus 1358 ----~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~f 1416 (1815)
+|||+.++ ..|+|++||||||+++|++||+.|++|+|+|++||||+|+++|+|||..
T Consensus 1076 ~~llGitkasl~--t~SflsaASFqeTtkvLt~Aai~gk~D~L~GlkENVIiG~liPaGTG~~ 1136 (1140)
T TIGR02386 1076 PQLLGITKASLN--TESFLSAASFQETTKVLTDAAIKGKVDYLLGLKENVIIGNLIPAGTGLK 1136 (1140)
T ss_pred eeeeeeeehhcc--CCCcccccchhhHHHHHHHHHhcCCCCCCCCcccceEecCcccCCCCcc
Confidence 56777775 4699999999999999999999999999999999999999999999963
|
Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain. |
| >PRK00566 DNA-directed RNA polymerase subunit beta'; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-207 Score=1985.01 Aligned_cols=1031 Identities=29% Similarity=0.462 Sum_probs=802.3
Q ss_pred ccceEEEEcCCHHHHHhcceeEEeeCccccCC--CCCCCCCCCCCCCCcCCCccccccccCC------CCcC--------
Q 000235 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKCETCTANM------AECP-------- 77 (1815)
Q Consensus 14 ~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~--~p~~gGl~D~rlG~~~~~~~C~TCg~~~------~~Cp-------- 77 (1815)
+++.|+++++|||+|++||+.||++|+|+++. +|+.+||||+|++.+.+++.| .||+-. ..|+
T Consensus 6 ~~~~i~i~laspe~I~~ws~GeV~~petinyrt~kPe~~GLfcerIFgp~kd~eC-~Cgkyk~~~~~~~~C~~cgve~~~ 84 (1156)
T PRK00566 6 DFDAIKIGLASPEKIRSWSYGEVKKPETINYRTLKPERDGLFCERIFGPTKDYEC-LCGKYKRVRYKGIICERCGVEVTR 84 (1156)
T ss_pred CcceEEEEccCHHHHHHhhcceEccccccccCCCccCCCCcccchhcCcccCcEE-eCccccccCcCCcCCCCCCceeee
Confidence 78899999999999999999999999999997 999999999999877889999 798522 4688
Q ss_pred -----CccceeeccccccchhhhhHH-----------HHHhcccceecceeccCCchHHHHHHHHhcChHHHHHHHHHHh
Q 000235 78 -----GHFGHLELAKPMFHIGFMKTV-----------LSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141 (1815)
Q Consensus 78 -----GHfGhIeL~~PV~h~~f~~~v-----------~~iL~~vC~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 141 (1815)
+|||||+|+.||+|+|||+.+ .|.|++||++|+++.+++.+..+.....+ . ...+.++.+..
T Consensus 85 ~~vrr~rmGhI~La~Pv~Hiwy~k~~ps~i~~ll~~~~k~le~v~y~~~~~v~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 162 (1156)
T PRK00566 85 SKVRRERMGHIELAAPVAHIWFFKSLPSRIGLLLDMSLKDLERVLYFESYVVIDPGDTPLEKKQLL-T-EEEYREALEEY 162 (1156)
T ss_pred chhhhhhcceeeecCceeeeeecCCCchHHHHHhCCCHHHhhheeecceEEEeCCCCCchhhhccc-C-HHHHHHHHHHh
Confidence 999999999999999999943 79999999999999988754322221111 1 11122222211
Q ss_pred hhccccCCCCCCCCCCCCCCcccccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHH
Q 000235 142 KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVL 221 (1815)
Q Consensus 142 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~il 221 (1815)
. . . ...+||+...+....++++..+....+++.... -+..+..+++
T Consensus 163 ~------~--~--------------~~~~~Ga~ai~~ll~~~dl~~~~~~l~~~~~~~------------~~~~~~~~~~ 208 (1156)
T PRK00566 163 G------D--E--------------FVAKMGAEAIKELLKNIDLEAEAEELREELKET------------GSEQKRKKAL 208 (1156)
T ss_pred c------c--c--------------ccccccHHHHHHHHHhCCHHHHHHHHHHHHHhc------------ccchhHHHHH
Confidence 0 0 0 123589888888888888777665543322110 0122334455
Q ss_pred hhcChhhHHHhcCCCCCCCccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Q 000235 222 KRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291 (1815)
Q Consensus 222 k~i~~~d~~~l~~~~~~~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~ 291 (1815)
|+|.--+.. .....+|+||||++||||||++||+ ||||++|++||++|++|+++.+.++|..++.+
T Consensus 209 krl~~~~~f----~~s~~~Pewmil~~lPV~Pp~lRP~v~l~~g~~~~sDLn~lyr~II~rNnrLk~~~~~~ap~~ii~~ 284 (1156)
T PRK00566 209 KRLKVVEAF----RKSGNKPEWMILDVLPVIPPDLRPLVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIVRN 284 (1156)
T ss_pred HHHHHHHHH----HcCCCCccEeeEeecccCCCcccCceEeCCCcccCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 555433322 2236899999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHh
Q 000235 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371 (1815)
Q Consensus 292 ~~~~LQ~~V~~~~dn~~~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A 371 (1815)
.|++||++|++||||+..|.|.. .+++||+|||+||||||+||||+|||||||||||||||+|||+|++||||||+.||
T Consensus 285 ~~~~LQ~aV~~lidn~~~g~~~~-~~~~rplksls~~LkGK~GrFR~NLlGKRVDySgRSVI~pdP~L~l~e~GvP~~mA 363 (1156)
T PRK00566 285 EKRMLQEAVDALFDNGRRGRPVT-GPNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKKMA 363 (1156)
T ss_pred HHHHHHHHHHHHhccCccCCCcc-cccCCchhHHHHhhcCCCccccccccccccCCCCCceEeCCCCcccccccChHHHH
Confidence 99999999999999999987654 35789999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcccchhHHHHHHHHHHcCCCCCCCcccccEEEeCCCceeeccccccccccccccccEeeeecccCCeEEEecCC
Q 000235 372 LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 451 (1815)
Q Consensus 372 ~~LT~PE~Vt~~Ni~~l~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~dgD~VL~NRQP 451 (1815)
++||+| ||+++ |+.||+... ++.|+.++.. .-..+|.|.||+++||+|||||||
T Consensus 364 ~eL~~P-----f~i~~---L~~~g~~~~--ik~ak~~~~~----------------~~~~v~~vle~vi~gd~VLlNRqP 417 (1156)
T PRK00566 364 LELFKP-----FIMKK---LVERGLATT--IKSAKKMVER----------------EDPEVWDVLEEVIKEHPVLLNRAP 417 (1156)
T ss_pred HHhCcH-----HHHHH---HHHcCCccc--hHhhhhhhhh----------------hcCcceEEEEEecCCCEEEecCCC
Confidence 999865 77555 477886321 2224432210 112467788889999999999999
Q ss_pred ccccccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceecccccc
Q 000235 452 SLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531 (1815)
Q Consensus 452 sLHk~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l 531 (1815)
||||||||||++++++++||||||+||+||||||||||||||||||++||||+++||++.+||+||++|+|+++++||+|
T Consensus 418 TLHR~sIqAf~~~l~~gktirLhplvC~~fNADFDGDqMnvHvPqS~eA~aEa~~Lm~~~~nilsP~~G~Pi~~~~QD~i 497 (1156)
T PRK00566 418 TLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQAEARVLMLSSNNILSPANGKPIIVPSQDMV 497 (1156)
T ss_pred cccccccceeEEEEecCceEEECccccCccccccccceeEEecCCCHHHHHHHHHHhCCcccEEecCCCCeeEEeehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecccCC--------CccCHHHHHHHHHhcccCCCCCCCCcccCc-----cCCcchHHHHHHhcCCCceEeeecccC
Q 000235 532 LGCRKITKRD--------TFIEKDVFMNILMWWEDFDGKVPQPTILKP-----RPLWTGKQVFNLIIPKQINLFRTAAWH 598 (1815)
Q Consensus 532 ~g~~~lT~~d--------~f~~~~~~~~l~~~~~~~~~~~~~pai~kp-----~~lwtGKqi~s~~lp~~in~~~~~~~~ 598 (1815)
+|+|+||.+| +|++++|+++++... .-.++.+..+++ ..+|||||||+.+||++++|..
T Consensus 498 lG~y~LT~~~~~~~~~~~~F~~~~e~~~~~~~~---~i~l~~~i~~~~~~~~~i~tt~Gk~if~~ilP~~~~~~n----- 569 (1156)
T PRK00566 498 LGLYYLTREREGAKGEGMVFSSPEEALRAYENG---EVDLHARIKVRITSKKLVETTVGRVIFNEILPEGLPFIN----- 569 (1156)
T ss_pred hhhheeecccccccCCCceeCCHHHHHHHHHcC---CCCCCCeEEecCCCCceEEcCcHHHHHHhhccccceeec-----
Confidence 9999999998 899999999986421 112333333332 2469999999999999887652
Q ss_pred CCCCCCcCCCCCcEEEEecCeeeecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCc
Q 000235 599 ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678 (1815)
Q Consensus 599 ~~~~~~~~~~~d~~v~i~~gell~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~ 678 (1815)
.+|++||+++| +|||.+|++||.++|.+|||++++|+++|++.+|||||++|++
T Consensus 570 ----------------------~~g~ldKk~Lg----~LI~~i~~~yG~~~t~~~LD~ik~Lgf~yat~~GfSigi~Dl~ 623 (1156)
T PRK00566 570 ----------------------VNKPLKKKEIS----KIINEVYRRYGLKETVIFLDKIKDLGFKYATRSGISIGIDDIV 623 (1156)
T ss_pred ----------------------ccceecHHHHH----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCeEeehhhcC
Confidence 05899999998 7999999999999999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CChHHHH
Q 000235 679 ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSE----SNNLKAM 754 (1815)
Q Consensus 679 ~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~----~N~~~~M 754 (1815)
++++ +.++|++|+++++++.++|++|.++. +..+.++.++|+++++.+++.+++++.+ +|++++|
T Consensus 624 ip~~----K~~ii~~a~~~v~~i~~~y~~G~lt~-------~er~~kvi~~w~~~~d~v~~~~~~~l~~~~~~~N~i~mM 692 (1156)
T PRK00566 624 IPPE----KKEIIEEAEKEVAEIEKQYRRGLITD-------GERYNKVIDIWSKATDEVAKAMMKNLSKDQESFNPIYMM 692 (1156)
T ss_pred cChH----HHHHHHHHHHHHHHHHHHHHcCCCCc-------hHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCChhee
Confidence 9875 57899999999999999999999874 2345889999999999999999999875 8999999
Q ss_pred HhcCCCCcccchhhhhhhccccc-cCCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchh
Q 000235 755 VTAGSKGSFINISQMTACVGQQN-VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833 (1815)
Q Consensus 755 ~~sGsKGS~~N~~Qi~~~lGQQ~-~eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLi 833 (1815)
+.||||||++|++||+||+|||. .+|+.|+ .||.+||++||+|+|||||||||||||+
T Consensus 693 a~SGARGS~~ni~QL~GmrGlma~p~G~iie---------------------~pI~ssFreGLt~~EyFfst~GaRkGLi 751 (1156)
T PRK00566 693 ADSGARGSASQIRQLAGMRGLMAKPSGEIIE---------------------TPIKSNFREGLTVLEYFISTHGARKGLA 751 (1156)
T ss_pred eeccCCcCHHHHHHHHhhcCccccCCCCEee---------------------hhhhhhhhcCCCHHHHhhcCcchhhccc
Confidence 99999999999999999999984 5565443 2699999999999999999999999999
Q ss_pred hhccccCCCchhHHHHHHHhhceEEeec--CeeecCCCceEEEEecCCCCCceeeecccccccccchHHHhhhhhhcccc
Q 000235 834 DTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911 (1815)
Q Consensus 834 DTAvKTa~sGYlqRrLvk~lEdl~v~YD--gTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1815)
|||||||+||||||||||++||++|.|| ||.+ |-.|--+. ++| ..++ .+.+..+.|....++.+
T Consensus 752 DTALKTAdSGYLtRRLVdvaqDviV~~~DCgT~~---gi~~~~~~-~~~---~~i~-------~l~~~~~GR~~~~di~~ 817 (1156)
T PRK00566 752 DTALKTADSGYLTRRLVDVAQDVIVREDDCGTDR---GIEVTAII-EGG---EVIE-------PLEERILGRVLAEDVVD 817 (1156)
T ss_pred chheeeccceeeehhHHHhhCceEEEECCCCCcC---CEEEEEec-cCC---EEEe-------EhhheeEeEEEhhheec
Confidence 9999999999999999999999999998 5532 31111110 111 0011 11112222222222111
Q ss_pred CCCCcccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCC
Q 000235 912 ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991 (1815)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~ 991 (1815)
+..+. .+... ...++
T Consensus 818 ~~t~~-------------------------------------~i~~~----------------------------~~~i~ 832 (1156)
T PRK00566 818 PETGE-------------------------------------VIVPA----------------------------GTLID 832 (1156)
T ss_pred CCCCc-------------------------------------EEEcC----------------------------CCccC
Confidence 11000 00000 00111
Q ss_pred hHHHHHHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCC
Q 000235 992 PMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071 (1815)
Q Consensus 992 p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGE 1071 (1815)
. ++ ++++. ...+-++.+||+|+|+ .++++|.+||+|.|+ ...+|+.||
T Consensus 833 ~-~~-------~~~i~---------------~~~i~~v~iRS~ltC~---s~~gvC~~CYG~~La------~~~~v~iGe 880 (1156)
T PRK00566 833 E-EI-------ADKIE---------------EAGIEEVKIRSVLTCE---TRHGVCAKCYGRDLA------TGKLVNIGE 880 (1156)
T ss_pred H-HH-------HHHHH---------------HcCCCEEEEcCCeeec---CCCcccHhhhCcccc------CCCCcccCc
Confidence 1 11 11110 1123457789999998 589999999999986 788999999
Q ss_pred chhhHhhhccCCccccccccccccccccccccccccceeeeehhhcccCCCCceEEEeCCCCcchHHHHHHHHhhhcccc
Q 000235 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTT 1151 (1815)
Q Consensus 1072 aVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~t 1151 (1815)
|||+|||||||||+|||||+|||.+|| ++|.|+||+.|++++ +++|.+.+...+...+
T Consensus 881 aVGiIAAQSIGEPGTQLTmRTFHtGGv---dIT~Glprv~elfea-r~pk~~a~ise~~G~v------------------ 938 (1156)
T PRK00566 881 AVGVIAAQSIGEPGTQLTMRTFHTGGV---DITGGLPRVAELFEA-RKPKGPAIIAEIDGTV------------------ 938 (1156)
T ss_pred ceeEEeeeecCCCccceeeeeeeecce---eccCCccchhhheee-ccCCCceEEEecCCEE------------------
Confidence 999999999999999999999999999 999999999999996 6666553332222111
Q ss_pred ccccceeeEEEEcCCCCceEEEcccc-eeheeccCCCCcccccccCCcEEEEEechhhhhcccCCHHHHHHHHhhhcCCC
Q 000235 1152 LRSVTEATEVWYDPDPMGTIIEEDVE-FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230 (1815)
Q Consensus 1152 L~dv~~~~~i~ydp~~~~~~i~~d~~-~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~~ 1230 (1815)
++.-+......++-.+.+ ... .|.+|.
T Consensus 939 --------~~~~~~~~~~~i~i~~~~~~~~-~y~vp~------------------------------------------- 966 (1156)
T PRK00566 939 --------SFGKETKGKRRIVITPDDGEER-EYLIPK------------------------------------------- 966 (1156)
T ss_pred --------EeccccCCceEEEEeCCCCceE-EEEccC-------------------------------------------
Confidence 000000000000000000 000 000000
Q ss_pred ceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccccceecccchhhhhccccccccccccccHHHH
Q 000235 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEI 1310 (1815)
Q Consensus 1231 ~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~G~nl~~vl~~~~vD~~rt~sNdI~eI 1310 (1815)
..++++.+.+ .... .+.| ++| +-|++||
T Consensus 967 -------------~~~~~v~~gd--~v~~---------------G~~l----~~g------------------~~~~~~i 994 (1156)
T PRK00566 967 -------------GKHLLVQEGD--HVEA---------------GDKL----TDG------------------SIDPHDI 994 (1156)
T ss_pred -------------CCeeeecCCC--EEcc---------------CCcc----cCC------------------CCCHHHH
Confidence 0001111100 0000 0001 233 4579999
Q ss_pred HHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccce-----------------------------------
Q 000235 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGH----------------------------------- 1355 (1815)
Q Consensus 1311 ~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~----------------------------------- 1355 (1815)
++++||||+|++||+||++||..||++||+|||++|+|+||.+++
T Consensus 995 l~v~G~~~~~~~lv~eiq~vY~~QGv~I~dKHievIvrqM~~kv~i~~~gdt~~~~g~~v~~~~~~~~n~~~~~~g~~~~ 1074 (1156)
T PRK00566 995 LRVLGVEAVQNYLVNEVQKVYRLQGVKINDKHIEVIVRQMLRKVRITDPGDTDFLPGELVDRSEFEEENRKLIAEGKEPA 1074 (1156)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCcccccceeehHHHHHhCCeEEecCCCcCCCCCceeeHHHHHHHHHHHHHCCCCCC
Confidence 999999999999999999999999999999999999999998754
Q ss_pred -----ecccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCcccee
Q 000235 1356 -----LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCS 1417 (1815)
Q Consensus 1356 -----~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fd 1417 (1815)
+++|||++++ ..|+|++||||||+++|++||+.|++|+|+|++||||+|+++|+|||.+.
T Consensus 1075 ~~~~~llGItka~l~--t~SflsaASFQeTtkvLt~AAi~gk~D~L~GlkENVIiG~liPaGTG~~~ 1139 (1156)
T PRK00566 1075 TGRPVLLGITKASLA--TESFLSAASFQETTRVLTEAAIKGKVDPLRGLKENVIIGRLIPAGTGLAR 1139 (1156)
T ss_pred cccceeeeeeecccc--cCcccccccccchHHHHHHHHhcCCCCcCCCcccceEecCcccCCCCcch
Confidence 4678888886 46999999999999999999999999999999999999999999999763
|
|
| >PRK14906 DNA-directed RNA polymerase subunit beta'/alpha domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-196 Score=1878.32 Aligned_cols=1051 Identities=25% Similarity=0.412 Sum_probs=781.9
Q ss_pred cccceEEEEcCCHHHHHhcceeEEeeCccccCC--CCCCCCCCCCCCCCcCCCccc---------------cccccCCCC
Q 000235 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKC---------------ETCTANMAE 75 (1815)
Q Consensus 13 ~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~--~p~~gGl~D~rlG~~~~~~~C---------------~TCg~~~~~ 75 (1815)
..+..|+.+++|||+|++||++||++|+|+++. ||+.+||||.|+..+.+++.| +.||..+..
T Consensus 7 ~~f~~i~I~lASPe~Ir~WS~GEV~kpeTINyrT~KPE~dGLFCerIFGP~kd~eC~CGKyk~~~~~g~~C~~CGVEvt~ 86 (1460)
T PRK14906 7 TNFDALRISLASAEDIRSWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECACGKYKRIRFKGIVCERCGVEVTR 86 (1460)
T ss_pred cccceEEEEecCHHHHHhhhceeEcCccccccccCCCCCCCeeeceeccCccCcEEeCccccccCcCCeEcCCCCcEecc
Confidence 478899999999999999999999999999997 999999999999666566666 333333221
Q ss_pred ---cCCccceeeccccccchhhhhHH-----------HHHhcccceecceeccCCchH---------HHH---HHHHhcC
Q 000235 76 ---CPGHFGHLELAKPMFHIGFMKTV-----------LSIMRSVCFNCSKILADEDDH---------KFK---QALKIRN 129 (1815)
Q Consensus 76 ---CpGHfGhIeL~~PV~h~~f~~~v-----------~~iL~~vC~~C~~l~~~~~~~---------~~~---~~~~~~~ 129 (1815)
..-+||||+|+.||.|+|||+.+ .|.|+.|.++-+.+.+++... ... ...++.-
T Consensus 87 s~vRR~RMGhI~La~PV~HiWylk~~ps~i~~lL~~~~k~le~viYf~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (1460)
T PRK14906 87 AKVRRERMGHIELAAPVSHIWYFKGSPSRLGYLLDIKPKDLEKVLYFASYIITSVDKEAREEDADDLRDELAADLEELDA 166 (1460)
T ss_pred hHHHHHhcCcccccCcchhhhhccCCcHHHHHHhCCCHHHhhhhhccceeEEeccCcccccccccccccccccccccccc
Confidence 23799999999999999999954 577889998888877765210 000 0000000
Q ss_pred hHHHHHHHHHHh------h------------------------hccccCC------CCCCCCC----CCC-C-Cc-ccc-
Q 000235 130 PKNRLKKILDAC------K------------------------NKTKCEG------GDEIDVP----GQD-G-EE-PLK- 165 (1815)
Q Consensus 130 ~~~~~~~i~~~~------~------------------------~~~~C~~------~~~~~~~----~~~-~-~~-~~~- 165 (1815)
.+.++.+..... . ....+.. ...++.. ..+ . ++ ++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~~~~~~ 246 (1460)
T PRK14906 167 ERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKALRREAFDAFMQIEPKQLISDEALYRE 246 (1460)
T ss_pred cccchhhhhhccccccccccccccccccccccccchhhhhhccccchhhhhhhhhccccchhccccchhhhhhhhhHHHH
Confidence 000000000000 0 0000000 0000000 000 0 00 000
Q ss_pred -------cccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHHhhcChhhHHHhcCCCCC
Q 000235 166 -------KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238 (1815)
Q Consensus 166 -------~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~~~~~~ 238 (1815)
.-.++.|+..-+-....+++..+....+.+.. ..+-.+..+++|+|.--+. |....
T Consensus 247 ~~~~~~~~f~~~~Gaeai~~lL~~~dl~~~~~~l~~~~~-------------~~~~~~k~k~~kRl~~v~~----f~~s~ 309 (1460)
T PRK14906 247 MRLNYSIYFKGGMGAEAVRDLLDAIDLEKEAEELRAIIA-------------NGKGQKREKAVKRLKVVDA----FLKSG 309 (1460)
T ss_pred HHHHhCCCceecchHHHHHHHHHhCCHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHH----HHccC
Confidence 01223444433333334444333222221110 0122444556677765543 33346
Q ss_pred CCccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHhhccCCC
Q 000235 239 ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308 (1815)
Q Consensus 239 ~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~LQ~~V~~~~dn~~ 308 (1815)
.+|+||||++||||||++||+ ||||++|++||++|++|+++++.++|..++.+.|++||++|++||||++
T Consensus 310 ~~PewmiL~vlPV~Pp~lRP~V~l~gg~~atsDLn~lyr~II~rNnrLk~l~~~~ap~~ii~nekr~LQeaVd~liDN~~ 389 (1460)
T PRK14906 310 NDPADMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGR 389 (1460)
T ss_pred CCHHHHhhhcccCCCCCcCCcEEECCCcccCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccchhHHHHH
Q 000235 309 PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL 388 (1815)
Q Consensus 309 ~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~~Ni~~l 388 (1815)
.|.|. ..+++||+|||+||||||+||||+|||||||||||||||+|||+|++||||||+.||++||+| |++++|
T Consensus 390 ~g~p~-~~~~~rplKsls~~LkGK~GRFRqNLlGKRVDySgRSVIspdP~L~l~e~GlP~~mA~eLf~P-----f~i~~L 463 (1460)
T PRK14906 390 RGRPV-TGPGNRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKLHQCGLPSAMALELFKP-----FVMKRL 463 (1460)
T ss_pred cCCCC-ccccCCchhHHHHHhcccCcccccccccccccCcCCceEeCCCCCccccccCcHHHHHhcCch-----hHHHHH
Confidence 99876 456789999999999999999999999999999999999999999999999999999999866 666666
Q ss_pred HHHHHcCCCCCCCcccccEEEeCCCceeeccccccccccccccccEeeeecccCCeEEEecCCccccccccceeEEeecC
Q 000235 389 KELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468 (1815)
Q Consensus 389 ~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk~Simah~vkv~~~ 468 (1815)
..+ |... .++.|+.++. .....+|.|+||+++||+|||||||||||||||||+++++++
T Consensus 464 ~~~---~~~~--nik~ak~~i~----------------~~~~~v~~vle~vi~gd~VLlNRqPTLHRlsIqAf~~~L~~g 522 (1460)
T PRK14906 464 VEL---EYAA--NIKAAKRAVD----------------RGASYVWDVLEEVIQDHPVLLNRAPTLHRLGIQAFEPVLVEG 522 (1460)
T ss_pred HHh---cccc--cHHHHhhHHh----------------hcCCcceeeeeeeeccceeEeccCcccchhccceeeEEecCC
Confidence 554 3211 1122443321 123468999999999999999999999999999999999999
Q ss_pred CeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccccccccceeccc-CC------
Q 000235 469 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK-RD------ 541 (1815)
Q Consensus 469 ~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l~g~~~lT~-~d------ 541 (1815)
+||||||+||+||||||||||||+|||||++||||++.||++.+||++|++|+|+++++||+|+|+|+||. +|
T Consensus 523 ktIrLhplvC~~fNADFDGDqMnvHvPqS~eA~aEa~~Lm~~~~nilsP~~G~Pi~~~~QD~ilG~y~LT~~~~~~~~~~ 602 (1460)
T PRK14906 523 KAIKLHPLVCTAFNADFDGDQMAVHVPLSTQAQAEARVLMLSSNNIKSPAHGRPLTVPTQDMIIGVYYLTTERDGFEGEG 602 (1460)
T ss_pred ceEEecccccCccccCCcCceeeeecCCCHHHHHHHHHHhcchhcEecCCCCCeeEEeeeeeeeeeEEeeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 44
Q ss_pred -CccCHHHHHHHHHhcccCCCCCCCCc---------------------ccCccCCcchHHHHHHhcCCCceEeeecccCC
Q 000235 542 -TFIEKDVFMNILMWWEDFDGKVPQPT---------------------ILKPRPLWTGKQVFNLIIPKQINLFRTAAWHA 599 (1815)
Q Consensus 542 -~f~~~~~~~~l~~~~~~~~~~~~~pa---------------------i~kp~~lwtGKqi~s~~lp~~in~~~~~~~~~ 599 (1815)
+|.+.+++++++.+...++ ++.|. +.++...|+||+||+.+||++++|
T Consensus 603 ~~F~~~~e~~~a~~~~~~~~--l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~tt~Gr~Ifn~ilP~d~~f-------- 672 (1460)
T PRK14906 603 RTFADFDDALNAYDARADLD--LQAKIVVRLSRDMTVRGSYGDLEETKAGERIETTVGRIIFNQVLPEDYPY-------- 672 (1460)
T ss_pred ceeCCHHHHHHHHhcCCCcc--ccccEEEecCcccccccccccccCCCCCceEECCCCEEEEecccCCCccc--------
Confidence 7999999999887532222 11111 122345799999999999985443
Q ss_pred CCCCCcCCCCCcEEEEecCeeeecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCcc
Q 000235 600 DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679 (1815)
Q Consensus 600 ~~~~~~~~~~d~~v~i~~gell~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~ 679 (1815)
++++|+|+.+| +||+.+|++||.+.+..|||++++|+++|++.+||||||+|+.+
T Consensus 673 ---------------------vN~~l~KK~Lg----~LI~~i~~~~G~~~t~~fLD~Ik~LGf~yaT~sG~SIgi~Di~i 727 (1460)
T PRK14906 673 ---------------------LNYKMVKKDIG----RLVNDCCNRYSTAEVEPILDGIKKTGFHYATRAGLTVSVYDATI 727 (1460)
T ss_pred ---------------------ccceeeHHHHH----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhCCEEEeeccccc
Confidence 45689999998 79999999999999999999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHhcCC
Q 000235 680 DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759 (1815)
Q Consensus 680 ~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~~N~~~~M~~sGs 759 (1815)
+++ +.++|++|+++|++++++|++|.++. .|+ +.+++++|+++++++++.+++++++.|++++|+.|||
T Consensus 728 p~~----K~~iI~~A~~~V~ei~~~y~~G~iT~------~Er-~~kVi~iw~~a~d~v~~~~~~~l~~~N~i~mMa~SGA 796 (1460)
T PRK14906 728 PDD----KPEILAEADEKVAAIDEDYEDGFLSE------RER-HKQVVDIWTEATEEVGEAMLAGFDEDNPIYMMADSGA 796 (1460)
T ss_pred ChH----HHHHHHHHHHHHHHHHHHHHcCCCcH------HHH-HHHHHHHHHHHHHHHHHHHHHhcccCCCeEeeeeccC
Confidence 764 58899999999999999999999863 344 7999999999999999999999999999999999999
Q ss_pred CCcccchhhhhhhcccc-ccCCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhccc
Q 000235 760 KGSFINISQMTACVGQQ-NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838 (1815)
Q Consensus 760 KGS~~N~~Qi~~~lGQQ-~~eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAvK 838 (1815)
|||..||.||+||+||| ...|++|. .+|.+||++||+|.|||||||||||||+|||||
T Consensus 797 RGS~~QI~QLaGmRGlma~p~G~iIe---------------------~PI~SnFrEGLt~~EyFiSt~GaRKGL~DTALK 855 (1460)
T PRK14906 797 RGNIKQIRQLAGMRGLMADMKGEIID---------------------LPIKANFREGLSVLEYFISTHGARKGLVDTALR 855 (1460)
T ss_pred cccHHHHHHHHhcccceecCCCCccc---------------------cccccccccCCCHHHHHHHcccccchhhhhhhh
Confidence 99999999999999997 57887763 259999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHhhceEEeec--CeeecCCCceEEEEecCCCCCceeeecccccccccchHHHhhhhhhccccCCCCc
Q 000235 839 TSETGYIQRRLVKAMEDIMVKYD--GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP 916 (1815)
Q Consensus 839 Ta~sGYlqRrLvk~lEdl~v~YD--gTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1815)
||+||||||||||++|||+|..+ ||.+ |-.| ..+.. .. .+.+..+.|....++.++
T Consensus 856 TAdSGYLTRRLVdVaQDViV~e~DCgT~~---Gi~v-----------~~~~~--~~--~l~~ri~GR~~~~di~~~---- 913 (1460)
T PRK14906 856 TADSGYLTRRLVDVAQDVIVREEDCGTDE---GVTY-----------PLVKP--KG--DVDTNLIGRCLLEDVCDP---- 913 (1460)
T ss_pred ccccchHHHHHHHhhhheEEEeccCCCCC---CEEE-----------EEeec--cc--chhheeeeEEEHhhhcCC----
Confidence 99999999999999999999875 5532 2112 11100 00 001111111111111000
Q ss_pred ccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCChHHHH
Q 000235 917 NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996 (1815)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p~~~~ 996 (1815)
.++ +.++ ....++....+
T Consensus 914 -----------------------------------------~g~--~i~~-------------------~~~~I~~~~~~ 931 (1460)
T PRK14906 914 -----------------------------------------NGE--VLLS-------------------AGDYIESMDDL 931 (1460)
T ss_pred -----------------------------------------CCC--EEEe-------------------CCCeeCcHHHH
Confidence 000 0000 00111111101
Q ss_pred HHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhH
Q 000235 997 EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076 (1815)
Q Consensus 997 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~i 1076 (1815)
+++ .+..+.++.+||+|+|+ .++++|++||+|.|+ ...+|+.|||||||
T Consensus 932 -------~~i---------------~~~gi~~v~iRS~ltC~---s~~gvC~kCYG~dLa------tg~~V~iGeaVGiI 980 (1460)
T PRK14906 932 -------KRL---------------VEAGVTKVQIRTLMTCH---AEYGVCQKCYGWDLA------TRRPVNIGTAVGII 980 (1460)
T ss_pred -------HHH---------------HHCCCCEEEEeCCeeEC---CCCCChhhCcCCccc------CCcEeccccceeee
Confidence 111 11234567899999998 689999999999997 78899999999999
Q ss_pred hhhccCCccccccccccccccccccccccccceeeeehhhcccCCCCceEEEeCCCCcchHHHHHHHHhhhccccccccc
Q 000235 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVT 1156 (1815)
Q Consensus 1077 AAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~ 1156 (1815)
||||||||+|||||+|||.+||++++||.|+||+.|++.+ +++|.+.+.-.+..
T Consensus 981 AAQSIGEPGTQLTMRTFHtGGv~~~dit~GLpRv~eLfEa-r~pk~~a~i~e~~G------------------------- 1034 (1460)
T PRK14906 981 AAQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVAELFEA-RKPKGEAVLAEISG------------------------- 1034 (1460)
T ss_pred eeeecCCCcceeeeeeeecccccccccccCcchhhhheee-ccCCCceeeeccCC-------------------------
Confidence 9999999999999999999999989999999999999996 44554432211111
Q ss_pred eeeEEEEcCCC-CceE-EEcccceeheeccCCCCcccccccCCcEEEEEechhhhhcccCCHHHHHHHHhhhcCCCceee
Q 000235 1157 EATEVWYDPDP-MGTI-IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234 (1815)
Q Consensus 1157 ~~~~i~ydp~~-~~~~-i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~~ 1234 (1815)
.++| +.+. ...+ |..+..-.+ .|.+|..
T Consensus 1035 -~v~i--~~~~~~~~i~i~~~~~~~~-~y~v~~~---------------------------------------------- 1064 (1460)
T PRK14906 1035 -TLQI--TGDKTEKTLTIHDQDGNSR-EYVVSAR---------------------------------------------- 1064 (1460)
T ss_pred -EEEe--ccCCCceEEEEECCCCcee-EEEccCC----------------------------------------------
Confidence 0011 0000 0000 000000000 0011100
Q ss_pred ecCCCccceEEEEE--EccCCCCCCCCCCCcchhHHHHHHHHhhccccceecccchhhhhccccccccccccccHHHHHH
Q 000235 1235 FNDDNADKLILRIR--IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIE 1312 (1815)
Q Consensus 1235 ~~~dn~~~~~~~ir--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~G~nl~~vl~~~~vD~~rt~sNdI~eI~~ 1312 (1815)
.+++ +.+ . +. .. ....| ++| +-|+++|++
T Consensus 1065 ----------~~~~~~v~~-g--------d~---v~-----~G~~l----~~G------------------~~~p~~il~ 1095 (1460)
T PRK14906 1065 ----------VQFMPGVED-G--------VE---VR-----VGQQI----TRG------------------SVNPHDLLR 1095 (1460)
T ss_pred ----------cccccccCC-C--------CE---Ec-----cCCCc----cCC------------------CCCHHHHHH
Confidence 0000 000 0 00 00 00001 133 458999999
Q ss_pred hhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccce-------------------------------------
Q 000235 1313 VLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGH------------------------------------- 1355 (1815)
Q Consensus 1313 vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~------------------------------------- 1355 (1815)
+.|+||+.++||+||++||..||+.||++||++|+.+|+.+-+
T Consensus 1096 ~~g~~~~~~ylv~eVQ~VYr~QGV~InDKHiEvIvRQMl~kV~I~d~Gdt~fl~Ge~vd~~~~~~~n~~~~~~g~~pa~~ 1175 (1460)
T PRK14906 1096 LTDPNTTLRYIVSQVQDVYVSQGVDINDKHIEVIARQMLRKVAVTNPGDSDYLPGRQVNRYEFEDTANNLILEGKQPPVG 1175 (1460)
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCceeccccHHHHHHHHhceEEEecCCCcCCCCCCeeeHHHHHHHHHHHHHcCCCCcee
Confidence 9999999999999999999999999999999999999998864
Q ss_pred ---ecccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccce
Q 000235 1356 ---LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416 (1815)
Q Consensus 1356 ---~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~f 1416 (1815)
+++||+..++ ..|+|+.|||+||+++|++||+.|++|.|.|++||||+|++||+|||..
T Consensus 1176 ~p~llGITKasL~--t~SflSaASFQeTtrVLt~AAi~gk~D~L~GLKENVIiG~lIPAGTG~~ 1237 (1460)
T PRK14906 1176 QPLLLGITKASLA--TDSWLSAASFQETTKVLTDAAIEGKVDHLAGLKENVIIGKPIPAGTGLS 1237 (1460)
T ss_pred eeEEeeeeecccc--cccccccccccchHHHHHHHHhcCCCCcCCCCccceEecceecCCCCcc
Confidence 4477777775 3699999999999999999999999999999999999999999999963
|
|
| >PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-189 Score=1877.61 Aligned_cols=853 Identities=26% Similarity=0.402 Sum_probs=660.7
Q ss_pred cccccceEEEEcCCHHHHHhcceeEEeeCccccCC--CCCCCCCCCCCCCCcCCCccc----------------cccccC
Q 000235 11 EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKC----------------ETCTAN 72 (1815)
Q Consensus 11 ~~~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~--~p~~gGl~D~rlG~~~~~~~C----------------~TCg~~ 72 (1815)
....+..|+.+++|||+|++||++||++|+|+++. +|+.+||||.|+..+.+++.| ..||..
T Consensus 1392 ~~~~~~~i~i~lASpe~I~~ws~GeV~kpeTinyrt~kPe~dGLFcerIFGp~kd~eC~Cgkyk~~~~~g~~~C~~Cgve 1471 (2890)
T PRK09603 1392 RPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKDYECLCGKYKKPRFKDIGTCEKCGVA 1471 (2890)
T ss_pred cccCcceEEEEecCHHHHHHhhceeEccccccccccCccCCCCEeeceeccCccCcEEeCCCcccccCCCCEEcCCCCcE
Confidence 35688999999999999999999999999999997 999999999999665556655 444433
Q ss_pred CCC---cCCccceeeccccccchhhhhHH-----------HHHhcccceecceeccCCchH--------HHHHHHHhcCh
Q 000235 73 MAE---CPGHFGHLELAKPMFHIGFMKTV-----------LSIMRSVCFNCSKILADEDDH--------KFKQALKIRNP 130 (1815)
Q Consensus 73 ~~~---CpGHfGhIeL~~PV~h~~f~~~v-----------~~iL~~vC~~C~~l~~~~~~~--------~~~~~~~~~~~ 130 (1815)
... ...+||||+|+.||.|+||++.+ .+.|+.|.++-..+.+++... .+.....+ .
T Consensus 1472 vt~s~vRR~RmGhI~La~Pv~HiWy~k~~ps~i~~ll~~~~k~le~viy~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~- 1549 (2890)
T PRK09603 1472 ITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDIL-N- 1549 (2890)
T ss_pred echhHhHHHhcCceeecCcceeeeccCCCchHHHHHhCCCHHHhhhhhcceeeEEecCCccccccccccchhhhhhh-h-
Confidence 221 24799999999999999999954 577889998888888776421 11110001 0
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCCCcccccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcc
Q 000235 131 KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210 (1815)
Q Consensus 131 ~~~~~~i~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1815)
...+.++.+.. . .. .+ ..++|+..-+-....+++..+....+.+....
T Consensus 1550 ~~~~~~~~~~~---~-~~---~f--------------~~~~Gaeai~~lL~~~dl~~~~~~l~~~~~~~----------- 1597 (2890)
T PRK09603 1550 EEQYQNISRRY---E-DR---GF--------------VAQMGGEAIKDLLEEIDLITLLQSLKEEVKDT----------- 1597 (2890)
T ss_pred HHHHHHHHHHc---C-cc---cc--------------eechhHHHHHHHHHhCCHHHHHHHHHHHHHhc-----------
Confidence 01111221110 0 00 00 12355544333334455444333222211100
Q ss_pred cCCHHHHHHHHhhcChhhHHHhcCCCCCCCccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHH
Q 000235 211 TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQE 280 (1815)
Q Consensus 211 ~l~p~~v~~ilk~i~~~d~~~l~~~~~~~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~ 280 (1815)
-.-.+...++|+|.--+..+ ...++|+||||++||||||++||+ ||||++|++||++|++|++++
T Consensus 1598 -~~~~~~~~~~krl~~v~~f~----~s~~~PewmiL~~lPV~Pp~lRP~v~l~gg~~a~sDln~lyr~II~rNnrLk~l~ 1672 (2890)
T PRK09603 1598 -NSDAKKKKLIKRLKVVESFL----NSGNRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLM 1672 (2890)
T ss_pred -cHHHHHHHHHHHHHHHHHHH----hcCCChHheeeeeeccCCCcccCcEEeCCCcccCCCccHHHHHHHHHHHHHHHHH
Confidence 01122344567775544333 346899999999999999999999 899999999999999999999
Q ss_pred HcCCChhhHHHHHHHHHHHHHhhccCCCCCCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcc
Q 000235 281 RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360 (1815)
Q Consensus 281 ~~g~~~~~i~~~~~~LQ~~V~~~~dn~~~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~ 360 (1815)
+.++|..++.+.|++||++|++||||+..|.+. ..+++||+|||+||||||+||||+|||||||||||||||+|||+|+
T Consensus 1673 ~~~ap~~ii~nek~~LQ~aVd~l~DN~~~~~~~-~~~~~rplKsls~~LkGK~GRFRqNLlGKRVDySgRSVI~pdP~L~ 1751 (2890)
T PRK09603 1673 ELGAPEIIVRNEKRMLQEAVDVLFDNGRSTNAV-KGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLK 1751 (2890)
T ss_pred HcCCCceehHHHHHHHHHHHHHHhccccccccc-cCCCCCcchhHHHHhcCCCCccccccccccccCcCCceEeCCCCcc
Confidence 999999999999999999999999999988754 4567899999999999999999999999999999999999999999
Q ss_pred cccccChHHHhhhccCCcccchhHHHHHHHHHHcCCCCCCCcccccEEEeCCCceeeccccccccccccccccEeeeecc
Q 000235 361 IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN 440 (1815)
Q Consensus 361 ~~evGvP~~~A~~LT~PE~Vt~~Ni~~l~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~ 440 (1815)
+||||||+.||++||+|+ + +++|+.||+... ++.|+.+ .+.....+|.|+|||+
T Consensus 1752 l~e~GvP~~mA~eL~~P~-----~---i~~L~~~G~~~~--lk~ak~~----------------i~~~~~~v~~vlr~vi 1805 (2890)
T PRK09603 1752 MDECGLPKNMALELFKPH-----L---LSKLEERGYATT--LKQAKRM----------------IEQKSNEVWECLQEIT 1805 (2890)
T ss_pred cccccChHHHHHHhCChH-----H---HHHHHHcCCccC--HHHHHHH----------------HHhccCccEEEEEeee
Confidence 999999999999999984 4 466788886421 1112221 1223456899999999
Q ss_pred cCCeEEEecCCccccccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCC
Q 000235 441 DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520 (1815)
Q Consensus 441 dgD~VL~NRQPsLHk~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g 520 (1815)
+||+|||||||||||||||||+|||++|+||||||+||+||||||||||||||||||++|||||+.||++.+||+||++|
T Consensus 1806 ~gd~VLlNRqPTLHR~sIqAf~~~l~~gktIrLhplvC~~fNADFDGDqMnvHvPqS~eA~aEa~~LM~s~~nilsP~~G 1885 (2890)
T PRK09603 1806 EGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASG 1885 (2890)
T ss_pred cCCeEEecCCCccccccceeeeEEEecCceEEeccccCCcccCCCCCceeEEeecCCHHHHHHHHHHhcccceEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccccccceecccCCC--------ccCHHHHHHHHHhcccCCCCCCCCcccCccCCcc--hHHHHHHhcCCCce
Q 000235 521 RPVMGIVQDTLLGCRKITKRDT--------FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT--GKQVFNLIIPKQIN 590 (1815)
Q Consensus 521 ~pi~g~~QD~l~g~~~lT~~d~--------f~~~~~~~~l~~~~~~~~~~~~~pai~kp~~lwt--GKqi~s~~lp~~in 590 (1815)
+|+++++||+|+|+|+||.+|+ |.+.++++.++.. ..++...+.+++++|+.||| ||||||.+||+.++
T Consensus 1886 ~Pi~~p~QD~vlG~y~LT~~~~~~~~~~~~F~~~~e~~~~~~~-~~~~~~~~i~~~~~p~~l~Tt~GK~ifs~ilP~~~~ 1964 (2890)
T PRK09603 1886 KAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAIDT-KELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIP 1964 (2890)
T ss_pred ceeEEeecceeeeeEEeeccccCCCCccceeCCHHHHHHHHHc-CCCccCCcceeecCCcEEEcCccceeeeccCccccc
Confidence 9999999999999999999996 4556666543321 22222234567778999999 99999999998665
Q ss_pred EeeecccCCCCCCCcCCCCCcEEEEecCeeeecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCc
Q 000235 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670 (1815)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~d~~v~i~~gell~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~Gf 670 (1815)
+. +++|.|||+.|| +|||.+|++||.+.|+.|||++++|+++|++.+||
T Consensus 1965 ~~---------------------------~~n~~ldKK~Lg----~LI~~i~~~yG~~~t~~fLD~lk~LGf~yat~~G~ 2013 (2890)
T PRK09603 1965 TD---------------------------LWNRPMKKKDIG----VLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGI 2013 (2890)
T ss_pred cc---------------------------cEeeeechHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 32 235779999998 89999999999999999999999999999999999
Q ss_pred eeeeccCccChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----
Q 000235 671 SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS---- 746 (1815)
Q Consensus 671 Sigi~D~~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~---- 746 (1815)
||||+|++++++ ++++|++|++++.++.++|++|.++.. ..+.++.++|+++++++++.+++.+.
T Consensus 2014 SIgI~Dl~ip~~----K~~iI~~A~~eV~ei~~~y~~G~it~~-------Er~~kvid~w~~~~d~v~~~~~~~l~~~~~ 2082 (2890)
T PRK09603 2014 SISMEDIITPKD----KQKMVEKAKVEVKKIQQQYDQGLLTDQ-------ERYNKIIDTWTEVNDKMSKEMMTAIAKDKE 2082 (2890)
T ss_pred eeeeccCcccHH----HHHHHHHHHHHHHHHHHHHHcCCCCcc-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999865 588999999999999999999999753 23678888999999999998877663
Q ss_pred CCChHHHHHhcCCCCcccchhhhhhhccccccCCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhcc
Q 000235 747 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826 (1815)
Q Consensus 747 ~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~~eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m 826 (1815)
+.|++++|+.||||||.+|++||+||+|||..-..+| . ...|.+||++||+|+|||||||
T Consensus 2083 ~~N~i~mMa~SGARGS~~NI~QLaGmrGqMakp~G~i--------------i------e~PI~snFrEGLtp~EyFfst~ 2142 (2890)
T PRK09603 2083 GFNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSI--------------I------ETPIISNFKEGLNVLEYFNSTH 2142 (2890)
T ss_pred CCCcHHHHHhccccccHHHHHHHHHcCCcEECCCCCc--------------c------cChhhcCcccCCCHHHHHHhcc
Confidence 5799999999999999999999999999985322111 1 1248999999999999999999
Q ss_pred CCCcchhhhccccCCCchhHHHHHHHhhceEEeecCeeecCCC-ceEEEEecCCCCCceeeecccccccccchHHHhhhh
Q 000235 827 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLG-DVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905 (1815)
Q Consensus 827 ~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g-~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~ 905 (1815)
||||||||||||||+||||||||||++|||+|..|.+-.. .| .|-.+..|++-+.+ +.+..+.|..
T Consensus 2143 GaRKGLiDTALKTAdSGYLTRRLVdvaQDviI~e~DCgT~-~Gi~v~~~~~~~~~i~~------------l~~ri~GR~~ 2209 (2890)
T PRK09603 2143 GARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTH-EGIEITDIAVGSELIEP------------LEERIFGRVL 2209 (2890)
T ss_pred ccccchhhhhhhccccchhhhhHHHhhcceEEEeccCCCC-CCeEEEEeecCCeeecc------------hhheeeeEEE
Confidence 9999999999999999999999999999999998733222 13 33333333221111 1122222222
Q ss_pred hhccccCCCCcccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCC
Q 000235 906 RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR 985 (1815)
Q Consensus 906 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~ 985 (1815)
..++.++..+.. +...
T Consensus 2210 ~~di~~p~t~~~-------------------------------------i~~~--------------------------- 2225 (2890)
T PRK09603 2210 LEDVIDPITNEI-------------------------------------LLYA--------------------------- 2225 (2890)
T ss_pred HhheEcCCCCcE-------------------------------------EEcC---------------------------
Confidence 222211111000 0000
Q ss_pred CCCCCChHHHHHHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcC
Q 000235 986 RPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065 (1815)
Q Consensus 986 ~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~s 1065 (1815)
...++. +++ +++ ....+-++.+||.|+|+ ..+++|++||+|.|+ ...
T Consensus 2226 -~~~I~~-~~~-------~~i---------------~~~gi~~v~iRS~LtC~---s~~gvC~~CYG~dLa------~g~ 2272 (2890)
T PRK09603 2226 -DTLIDE-EGA-------KKV---------------VEAGIKSITIRTPVTCK---APKGVCAKCYGLNLG------EGK 2272 (2890)
T ss_pred -CcCcCH-HHH-------HHH---------------HHcCCCEEEEcCcceec---CCCcChhhhcCCccc------CCC
Confidence 001111 111 111 01123467799999998 689999999999997 788
Q ss_pred cccCCCchhhHhhhccCCccccccccccccccccccc
Q 000235 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102 (1815)
Q Consensus 1066 lv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~N 1102 (1815)
+|+.|||||+|||||||||+|||||+|||.+||++..
T Consensus 2273 ~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~ 2309 (2890)
T PRK09603 2273 MSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRS 2309 (2890)
T ss_pred CccCCceeeEEeecccCCCccccchhhheeccccccc
Confidence 9999999999999999999999999999999997753
|
|
| >PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-189 Score=1872.16 Aligned_cols=1145 Identities=26% Similarity=0.375 Sum_probs=799.0
Q ss_pred ccccceEEEEcCCHHHHHhcceeEEeeCccccCC--CCCCCCCCCCCCCCcCCCcc---------------ccccccCCC
Q 000235 12 VAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMK---------------CETCTANMA 74 (1815)
Q Consensus 12 ~~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~--~p~~gGl~D~rlG~~~~~~~---------------C~TCg~~~~ 74 (1815)
...+..|+.+++|||+|++||++||++|+|+++. +|+.+||||.|+..+.+++. |+.||....
T Consensus 1445 ~~~~~~i~i~laSPe~I~~Ws~GeV~kpeTinyrt~kPE~dGLFcerIFGp~kd~eC~Cgkyk~~~~~g~~C~~Cgvevt 1524 (2836)
T PRK14844 1445 AQSFNEVSISIASPESIKRMSYGEIEDVSTANYRTFKVEKGGLFCPKIFGPVNDDECLCGKYKKRRHRGRICEKCGVEVT 1524 (2836)
T ss_pred hcccceEEEEecCHHHHHhhhceeECCcccccccCCCCCCCCeehhhhcCCCcCcEEecccccccccCCcCcCCCCcEee
Confidence 4578899999999999999999999999999997 99999999999854444444 666665544
Q ss_pred Cc---CCccceeeccccccchhhhhHH-----------HHHhcccceecceeccCCchHHHHHHHHhcChHHHHHHHHHH
Q 000235 75 EC---PGHFGHLELAKPMFHIGFMKTV-----------LSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140 (1815)
Q Consensus 75 ~C---pGHfGhIeL~~PV~h~~f~~~v-----------~~iL~~vC~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 140 (1815)
.+ ..+||||+|+.||.|+||++.+ .|.|+.|.++-+.+.+++....+.... +.. ...+.++.+.
T Consensus 1525 ~s~vRR~RmGhI~La~PV~HiWy~k~~ps~i~~lL~~~~k~le~v~y~~~~~v~~~~~~~~~~~~-~~~-~~~~~~~~~~ 1602 (2836)
T PRK14844 1525 SSKVRRERMGHIELASPVAHIWFLKSLPSRIGALLDMSLRDIENILYSDNYIVIDPLVSPFEKGE-IIS-EKAYNEAKDS 1602 (2836)
T ss_pred echhhHhhcCceeecCcceeeecccCCcHHHHHHhCCCHHHhhheeeeeeEEEecCCCCchhhhh-hcc-HHHHHHHHHh
Confidence 33 4899999999999999999954 577899999988888877544332211 111 1112222221
Q ss_pred hhhccccCCCCCCCCCCCCCCcccccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHH
Q 000235 141 CKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGV 220 (1815)
Q Consensus 141 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~i 220 (1815)
. .. +. + ..+.|+..-+-....+++..+....+.+.... -+..+..++
T Consensus 1603 ---~---~~-~~----------~----~~~~Gaeai~~lL~~~dl~~~~~~l~~~~~~~------------~~~~~~~~~ 1649 (2836)
T PRK14844 1603 ---Y---GI-DS----------F----VAMQGVEAIRELLTRLDLHEIRKDLRLELESV------------ASEIRRKKI 1649 (2836)
T ss_pred ---c---Cc-cc----------e----eecchHHHHHHHHHhCCHHHHHHHHHHHHHhc------------cHHHHHHHH
Confidence 0 00 00 0 11244443333333444443332222111100 012333556
Q ss_pred HhhcChhhHHHhcCCCCCCCccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 000235 221 LKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290 (1815)
Q Consensus 221 lk~i~~~d~~~l~~~~~~~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~ 290 (1815)
+|+|.--+. |.....+|+||||++||||||++||+ ||||++|++||++|++|+++.+.++|..++.
T Consensus 1650 ~krl~~~~~----f~~s~~rPewmil~~lPV~Pp~lRP~v~l~~g~~~~sDLn~ly~~II~~NnrLk~~~~~~ap~~ii~ 1725 (2836)
T PRK14844 1650 IKRLRIVEN----FIKSGNRPEWMILTTIPILPPDLRPLVSLESGRPAVSDLNHHYRTIINRNNRLRKLLSLNPPEIMIR 1725 (2836)
T ss_pred HHHHHHHHH----HHhcCCChhheeeeccccCCCcccCcEEeCCCcccCCchHHHHHHHHHHHHHHHHHHHcCCchhhHH
Confidence 677755443 33346899999999999999999999 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCC-ChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHH
Q 000235 291 EFAQLLQFHIATYFDNELPGQPRATQRSGR-PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369 (1815)
Q Consensus 291 ~~~~~LQ~~V~~~~dn~~~~~p~~~~~~~~-p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~ 369 (1815)
+.|++||++|++||||+..|.+.... ++| ++|||+||||||+||||+|||||||||||||||+|||+|+++|||||+.
T Consensus 1726 ~~~~~LQ~~V~~l~Dn~~~g~~~~~~-~~r~~lksls~~LkGK~GRFR~NLlGKRVDySgRSVI~pdP~L~l~evGlP~~ 1804 (2836)
T PRK14844 1726 NEKRMLQEAVDSLFDNSRRNALVNKA-GAVGYKKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLKLNQCGLPKR 1804 (2836)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCccCC-CCCCccccHHHHhcCCCCcccccccccccccCCCceEeCCCCcccceeeCCHH
Confidence 99999999999999999988765332 334 5899999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCcccchhHHHHHHHHHHcCCCCCCCcccccEEEeCCCceeeccccccccccccccccEeeeecccCCeEEEec
Q 000235 370 IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 449 (1815)
Q Consensus 370 ~A~~LT~PE~Vt~~Ni~~l~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~dgD~VL~NR 449 (1815)
||++||+| ||+++|+++... +.+..|+.+++. ...+. |.|.||+++||+|||||
T Consensus 1805 mA~eL~~P-----f~i~~L~~~~~~-----~~i~~a~~li~~---------------~~~~v-~dile~vi~gd~VLlNR 1858 (2836)
T PRK14844 1805 MALELFKP-----FVYSKLKMYGMA-----PTIKFASKLIRA---------------EKPEV-WDMLEEVIKEHPVLLNR 1858 (2836)
T ss_pred HHHhcccH-----HHHHHHHHcCcc-----cchHHHHHHHHh---------------hCCcc-eEEEEEEecCCEEEecC
Confidence 99999865 899988775321 332234433321 01223 55556666899999999
Q ss_pred CCccccccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceecccc
Q 000235 450 QPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529 (1815)
Q Consensus 450 QPsLHk~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD 529 (1815)
||||||||||||++++++++||||||+||+||||||||||||+|||||++||||++.||++.+||++|++|+|+++++||
T Consensus 1859 qPTLHR~sIqAf~~~l~~gktirlhp~vC~~fNADFDGDeMnvHvPqS~eA~aEa~~Lm~~~~nilsP~~G~Pii~~~QD 1938 (2836)
T PRK14844 1859 APTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPISLEAQLEARVLMMSTNNVLSPSNGRPIIVPSKD 1938 (2836)
T ss_pred CCccccccccceeeEeecCceEEecccCCCcccCCCCCceeeeecCCcHHHHHHHHHHhCCcccEEecCCCceeEeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceecccCCCcc----CHHHHHHHHHhcccCCCCCCCCcccCccCCc---------------chHHHHHHhcCCCce
Q 000235 530 TLLGCRKITKRDTFI----EKDVFMNILMWWEDFDGKVPQPTILKPRPLW---------------TGKQVFNLIIPKQIN 590 (1815)
Q Consensus 530 ~l~g~~~lT~~d~f~----~~~~~~~l~~~~~~~~~~~~~pai~kp~~lw---------------tGKqi~s~~lp~~in 590 (1815)
+|+|+|+||++|.|+ .+.+++++++.. +++.+..++.++++.+| .||+||+.+||+..+
T Consensus 1939 ~ilG~y~LT~~~~~~~~~~~f~~~~~~~~a~--~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~tt~GR~if~~ilP~~~~ 2016 (2836)
T PRK14844 1939 IVLGIYYLTLQEPKEDDLPSFGAFCEVEHSL--SDGTLHIHSSIKYRMEYINSSGETHYKTICTTPGRLILWQIFPKHEN 2016 (2836)
T ss_pred hhhhhhhhcccccccccccccCCHHHHHHHH--HcCCcccCceEEeeeccccCCCCcccceEecccHHHHHHHHcCCccc
Confidence 999999999999854 456777766543 56777788888888777 499999999998443
Q ss_pred EeeecccCCCCCCCcCCCCCcEEEEecCeeeecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCc
Q 000235 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670 (1815)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~d~~v~i~~gell~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~Gf 670 (1815)
+ ++++++|+|+|+.++ +||+.+|++||.+.|..|||++++|+++|++.+||
T Consensus 2017 ~-------------------------~~~~~n~~l~KK~l~----~II~~~~~~yG~~~t~~fLD~lk~LGf~yaT~~G~ 2067 (2836)
T PRK14844 2017 L-------------------------GFDLINQVLTVKEIT----SIVDLVYRNCGQSATVAFSDKLMVLGFEYATFSGV 2067 (2836)
T ss_pred c-------------------------CcceEeeeechhHHH----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhccE
Confidence 2 346888999999996 89999999999999999999999999999999999
Q ss_pred eeeeccCccChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 000235 671 SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL----- 745 (1815)
Q Consensus 671 Sigi~D~~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l----- 745 (1815)
|||++|++++++. .++|++|++++.++.++|++|.++. +.+++++.++|+++++++++.+++.+
T Consensus 2068 SIgi~Di~iP~~K----~~iI~~a~~~v~~i~~~y~~G~it~-------~Er~~kvi~iW~~~~d~v~~~~~~~l~~~~~ 2136 (2836)
T PRK14844 2068 SFSRCDMVIPETK----ATHVDHARGEIKKFSMQYQDGLITR-------SERYNKVIDEWSKCTDMIANDMLKAISIYDG 2136 (2836)
T ss_pred EeeHhHcccCHHH----HHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999988664 6789999999999999999999874 33679999999999999999988866
Q ss_pred -CCCChHHHHHhcCCCCcccchhhhhhhcccccc-CCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhh
Q 000235 746 -SESNNLKAMVTAGSKGSFINISQMTACVGQQNV-EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823 (1815)
Q Consensus 746 -~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~~-eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFf 823 (1815)
++.|++++|+.||||||..||.|++||+|||.. .|..| ..+|.+||++||+|.||||
T Consensus 2137 ~~~~N~i~mMa~SGARGS~sQI~QLaGmRGLmakp~G~iI---------------------e~PI~SNFrEGLsv~EyFi 2195 (2836)
T PRK14844 2137 NSKYNSVYMMVNSGARGSTSQMKQLAGMRGLMTKPSGEII---------------------ETPIISNFREGLNVFEYFN 2195 (2836)
T ss_pred cCCCCceeeeecccCccCHHHHHHHHhcceeeecCCCCee---------------------ecchhhhhccCCCHHHhhh
Confidence 357999999999999999999999999999753 34332 1348999999999999999
Q ss_pred hccCCCcchhhhccccCCCchhHHHHHHHhhceEEeec--CeeecCCCceEEEEecCCCCCceeeecccccccccchHHH
Q 000235 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901 (1815)
Q Consensus 824 H~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~v~YD--gTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~ 901 (1815)
|||||||||+|||+|||+||||||||||++|||+|.-+ ||-+ |-.|.-+. ||-+ .+ ..+.+..+
T Consensus 2196 St~GaRKGL~DTALKTAdSGYLTRRLVDVaQDviI~e~DCgT~~---Gi~v~~~~--~~~~--~i-------~~L~~ri~ 2261 (2836)
T PRK14844 2196 STHGARKGLADTALKTANSGYLTRRLVDVSQNCIVTKHDCKTKN---GLVVRATV--EGST--IV-------ASLESVVL 2261 (2836)
T ss_pred hccccccchhhhhhhcccccchhhhhhhhhceEEEEecccCCCC---ceEEEEec--cCCe--EE-------eEhhheeE
Confidence 99999999999999999999999999999999999764 6643 43333221 1100 01 11112222
Q ss_pred hhhhhhccccCCCCcccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcc
Q 000235 902 DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFK 981 (1815)
Q Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~ 981 (1815)
.|....++.++..+. .+...
T Consensus 2262 GR~~a~di~~p~t~~-------------------------------------~i~~~----------------------- 2281 (2836)
T PRK14844 2262 GRTAANDIYNPVTKE-------------------------------------LLVKA----------------------- 2281 (2836)
T ss_pred EEEEHhHeEcCCCCC-------------------------------------EEEeC-----------------------
Confidence 222211211111000 00000
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHH
Q 000235 982 VDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061 (1815)
Q Consensus 982 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~k 1061 (1815)
...++. ++++.+ ++..+-.+.+||.|+|+ ..+++|++||+|.|+
T Consensus 2282 -----~~~I~~-~~~~~i----------------------~~~gi~~v~IRS~ltC~---s~~gvC~~CYG~~La----- 2325 (2836)
T PRK14844 2282 -----GELIDE-DKVKQI----------------------NIAGLDVVKIRSPLTCE---ISPGVCSLCYGRDLA----- 2325 (2836)
T ss_pred -----CCccCH-HHHHHH----------------------HHcCCCEEEEcCCeeEC---CCCCChhhccCcccc-----
Confidence 000000 011111 12234567799999997 679999999999997
Q ss_pred hhcCcccCCCchhhHhhhccCCccccccccccccccccccccc--------cccceeeeehhhcccCCCCce------EE
Q 000235 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT--------LGVPRLREIINVAKKIKTPSL------SV 1127 (1815)
Q Consensus 1062 y~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVT--------lGvPRLkEIin~ak~ikTP~m------tv 1127 (1815)
...+|+.|||||+|||||||||+|||||+|||.+||++..+. .|+-++.++--+ ++-..-.+ .+
T Consensus 2326 -~~~~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~~~~~G~v~~~~~~~v-~~~~g~~iv~sr~~~~ 2403 (2836)
T PRK14844 2326 -TGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLNNSNII-IDKNGNKIVISRSCEV 2403 (2836)
T ss_pred -CCCcccccccceeeeecccCCCcceeeeeheeeccccccccccceeEeccCceEEeccceeE-EcCCCcEEEEecccEE
Confidence 788999999999999999999999999999999999875553 477776663222 11111111 11
Q ss_pred EeCCCCcchHHHHHHHHhhhccccccccceeeEE--EEcCCCCceEEEcccceeheeccCCCC-----cc-cccccCCcE
Q 000235 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEV--WYDPDPMGTIIEEDVEFVKSYYEMPDE-----DI-APEKISPWL 1199 (1815)
Q Consensus 1128 ~l~~~~~~~~~~a~~v~~~le~~tL~dv~~~~~i--~ydp~~~~~~i~~d~~~~~~~~~~~~~-----~~-~~~~~~~~~ 1199 (1815)
-+.+......+.-+......-.+.-++.+++-++ .|||... .+|.|-...+. |-++-+. +. ..+.++.++
T Consensus 2404 ~i~d~~g~~~~~~~i~yga~l~v~~g~~V~~g~~la~wdp~~~-piisE~~G~v~-f~d~~~g~t~~~~~D~~tg~~~~~ 2481 (2836)
T PRK14844 2404 VLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDPYTL-PIITEKTGTVS-YQDLKDGISITEVMDESTGISSKV 2481 (2836)
T ss_pred EEEecCCcEEEEEecccccEEEecCCCEecCCCEEEEEcCCCc-ceEeecceEEE-EEEEecceeEEEEecccCCceEEE
Confidence 2211111100111111122222223333333222 3444321 22222111110 0000000 00 000000000
Q ss_pred E--------------EEEe-chh-h--------------------h--hcccCCHHHHHHHHhhhcC--CC---------
Q 000235 1200 L--------------RIEL-NRE-M--------------------M--VDKKLSMAAVAEKINQEFD--DD--------- 1230 (1815)
Q Consensus 1200 l--------------rl~l-~~~-~--------------------~--~~~~l~~~~i~~~i~~~~~--~~--------- 1230 (1815)
+ ++.| |.. . + ..-.+...+|..+|..... .|
T Consensus 2482 i~~~~~~~~~~~~~P~i~i~~~~g~~~~~~~~~~~~y~lp~ga~l~v~~g~~v~~Gdilakipr~~~~t~DIT~GLpRv~ 2561 (2836)
T PRK14844 2482 VKDWKLYSGGANLRPRIVLLDDNGKVMTLASGVEACYFIPIGAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVI 2561 (2836)
T ss_pred EeeccccccccccCceEEEEcCCCceecccCCcceeeecCCCceEeeccCceecccceeecccccccccCccCCCCccch
Confidence 0 1111 000 0 0 0001222333333322110 01
Q ss_pred -ceeeecCCCc-----cceEEEEEEccCCCCCC-----CCCCCcchhHHHHHHHHhhccccceecccchhhhhccccc--
Q 000235 1231 -LTCIFNDDNA-----DKLILRIRIMNDEAPKG-----ELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDV-- 1297 (1815)
Q Consensus 1231 -~~~~~~~dn~-----~~~~~~ir~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~l~~~~~~G~nl~~vl~~~~v-- 1297 (1815)
++......+. -+.++.+ +..+..... ..++++ ....++-...++++ +-+| |.|
T Consensus 2562 eLFEar~pk~~a~isei~G~V~~-~~~~~~~~~~i~i~~~~~~~-~~~~y~vp~~~~~~---v~~g---------d~V~~ 2627 (2836)
T PRK14844 2562 ELFEARRPKEHAIVSEIDGYVAF-SEKDRRGKRSILIKPVDEQI-SPVEYLVSRSKHVI---VNEG---------DFVRK 2627 (2836)
T ss_pred heeeeecCCCceEEecCCcEEEe-cccccCCceEEEEECCCCCc-cceEEEccCCceEE---ecCC---------CEEcC
Confidence 0100000000 0001111 000000000 000000 00001000001111 0112 112
Q ss_pred -cccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhcc-------------ce--------
Q 000235 1298 -DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR-------------GH-------- 1355 (1815)
Q Consensus 1298 -D~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~-------------G~-------- 1355 (1815)
|.-.--+.|++||++++||||+|++|++||++||..||++||+|||++|+++||.+ |+
T Consensus 2628 G~~l~~G~~~p~dil~v~G~ea~~~ylv~Evq~VYr~QGV~IndKHiEvIvrQMl~kV~I~d~Gdt~~l~Ge~v~~~~~~ 2707 (2836)
T PRK14844 2628 GDLLMDGDPDLHDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPGDTMYLVGESIDKLEVD 2707 (2836)
T ss_pred CCCccCCCCCHHHHHHhhCHHHHHHHHHHHHHHHHHhcCeeecccEeeeehhhhhceeEEecCCCcccCCCceecHHHHH
Confidence 11112356999999999999999999999999999999999999999999999988 22
Q ss_pred -------------------ecccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccc
Q 000235 1356 -------------------LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415 (1815)
Q Consensus 1356 -------------------~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~ 1415 (1815)
+++|||+.++ ..|+|++||||||+++|++||+.|++|+|.|++||||+|+++|+|||.
T Consensus 2708 ~~n~~~~~~g~~pa~~~pvllGITkasL~--t~SflSaASFQeTtkVLt~AAi~Gk~D~L~GlKENVIiG~lIPaGTG~ 2784 (2836)
T PRK14844 2708 RENDAMSNSGKRPAHYLPILQGITRASLE--TSSFISAASFQETTKVLTEAAFCGKSDPLSGLKENVIVGRLIPAGTGL 2784 (2836)
T ss_pred HHHHHHHhcCCCCceeeeeeeceeecccc--CCChhhcCCcccchHHHHHHHhcCCCCcCCCcccceEecCcccCCcCc
Confidence 5688888885 369999999999999999999999999999999999999999999994
|
|
| >COG0086 RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-161 Score=1544.15 Aligned_cols=774 Identities=36% Similarity=0.539 Sum_probs=686.6
Q ss_pred ccceEEEEcCCHHHHHhcceeEEeeCccccCC-CCCCCCCCCCCCCCcCCCccccccccCCCCcCCccceeeccccccch
Q 000235 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHI 92 (1815)
Q Consensus 14 ~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~-~p~~gGl~D~rlG~~~~~~~C~TCg~~~~~CpGHfGhIeL~~PV~h~ 92 (1815)
.++ |+||++||||||+|| +||++|++||++ +|+.+||+|+|||.+++++.| |||+....|||||||||||+||+|+
T Consensus 4 ~~~-i~~gl~sp~~ir~~s-~ev~~pet~~~~~~P~~~Gl~d~ri~~~~~~~~C-~Cg~~~~~~~~~~GhIeLa~Pv~hi 80 (808)
T COG0086 4 IFD-IKFGLASPEEIRSWS-GEVKKPETINYRTKPERGGLFDERIFGPDKDYEC-TCGKYKRICPGGFGHIELAAPVAHI 80 (808)
T ss_pred cce-eEEecCCHHHHHhcc-eEEcCccccCCCCcccCCCccchhhcCCCCCcee-cCCCCcCcCCCCceeEEeecceEEe
Confidence 445 999999999999966 999999999998 999999999999999999999 9999999999999999999999999
Q ss_pred hhhhHHHHHhcccceecceeccCCchHHHHHHHHhcChHHHHHHHHHHhhhccccCCCCCCCCCCCCCCcccccccCCCC
Q 000235 93 GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCG 172 (1815)
Q Consensus 93 ~f~~~v~~iL~~vC~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~gCg 172 (1815)
||++.+..+|+|.|.+|+++++... +..+ . ..+++....++... .....|.+||
T Consensus 81 ~f~k~~~~~L~~~~~~~~~v~~~~~---~~~~---~---~~l~~~~~~~~~~~-----------------~~~~~~~~~G 134 (808)
T COG0086 81 WFFKSIPSLLDMTCRDCERVLYFEA---YVVL---G---TDLEKIQLLNETEY-----------------VYDSFCAHCG 134 (808)
T ss_pred chhhccHHHHhhhHHhhhhhhhHhH---HHHh---c---cchhhhcccchhee-----------------eccccCCCCC
Confidence 9999999999999999999998721 1111 0 11222211111100 1124578899
Q ss_pred ccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHHhhcChhhHHHhcCCCCCCCccceEEeecccC
Q 000235 173 AQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252 (1815)
Q Consensus 173 ~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~~~~~~~~Pe~~il~~lpVp 252 (1815)
+.+++++++++.++.+.+ . ..+++.+++++|++|+..|+.++| .++||||||++||||
T Consensus 135 a~~~~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~l~~~d~~~~~----~~~pewmil~vlpV~ 192 (808)
T COG0086 135 AEAIKILLEKPDLETERE-----------------E-ETLSPTKVKKLLKRLKVVDAFLLS----GNRPEWMILTVLPVP 192 (808)
T ss_pred chhHHHHHhCcchhhhhh-----------------h-cccCHHHHHHHHhhccHHHHHHhc----CCCcceeEEEeeccC
Confidence 999999999988776650 1 357899999999999999999998 589999999999999
Q ss_pred CCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCh
Q 000235 253 PPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPI 322 (1815)
Q Consensus 253 P~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~LQ~~V~~~~dn~~~~~p~~~~~~~~p~ 322 (1815)
|+++||+ ||||++|++||++|++||++++.+++ .++++.|++||+||++|||| +.+.+.++ +||+
T Consensus 193 Pp~~RP~i~ld~g~~a~~dl~~~~~~ii~~n~rlk~~~~~~~~-~iv~~~~~~lQ~~v~~~~Dn---~~~~~~~~-~rPl 267 (808)
T COG0086 193 PPDLRPSIQLDGGRFAESDLNDLYRRVINRNNRLKRLLELAAP-IIVRNEKRMLQEAVDALFDN---RRPRAVTG-GRPL 267 (808)
T ss_pred CCCCCcceecCCCccchhHHHHHHHHHHHHHHHhHHhhhhcch-HHHHHHHHHHHHHHHHHhhc---CCCCCccC-CCcc
Confidence 9999999 99999999999999999999988555 99999999999999999999 45566666 5999
Q ss_pred hhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccchhHHHHHHHHHHcCCCCCCCc
Q 000235 323 KSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402 (1815)
Q Consensus 323 k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~~Ni~~l~~lv~ng~~~~pg~ 402 (1815)
|||+||||||+||||+|||||||||||||||+|||||+++|||||+.||++||+|+.||+||++.|++ |
T Consensus 268 ksl~~~LkgK~GrFR~nL~GKRVd~SgRsVI~~~P~l~~~e~GvP~~~A~~L~~p~~v~~~~~~~~~~----------~- 336 (808)
T COG0086 268 KSLSQRLKGKQGRFRQNLLGKRVDYSGRSVISVGPNLKLNQCGVPKKMALELFKPFVVTELNIEGLRT----------G- 336 (808)
T ss_pred ccHHHHhcCCCceeeccccccccCCCCceeecCCCCccccccCCHHHHHHHhccCEEEEehhhhhhhc----------C-
Confidence 99999999999999999999999999999999999999999999999999999999999999999977 5
Q ss_pred ccccEEEeCCCceeeccccccccccccccccEeeeecccCCeEEEecCCccccccccceeEEeec-CCeeeecccCCCCC
Q 000235 403 TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPY 481 (1815)
Q Consensus 403 ~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk~Simah~vkv~~-~~t~rln~~vc~py 481 (1815)
|+|+++.++.+ +..||.|+||+++||+|||||||||||+|||+|++++++ ++|||||++||.||
T Consensus 337 --a~~~~~~~~~~-------------~~~~w~Vl~evi~gd~Vl~NR~PtLHrlsImq~~e~vl~~gkt~rLh~lVc~~y 401 (808)
T COG0086 337 --AKYAKRMVERR-------------LPEVWDVLREVIDGDPVLLNRAPTLHRLSIMQAFEPVLPEGKAIRLHPLVCEAY 401 (808)
T ss_pred --CceEEeccccc-------------ccccchHHHHHhcCCccccccCChHHHHHHHhhceeeccccceeecchhhcccc
Confidence 99999877653 668999999999999999999999999999999999998 89999999999999
Q ss_pred CCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccccccccceecccCCCccCHHHHHHHHHhcccCCC
Q 000235 482 NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561 (1815)
Q Consensus 482 NADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l~g~~~lT~~d~f~~~~~~~~l~~~~~~~~~ 561 (1815)
||||||||||+|+|||.+|+||++.||++..||++|++|+||++.+||+|+|.||||..|+|++.+++++++++-...+.
T Consensus 402 NADFDGDeM~~Hvp~s~ea~AEa~~lm~tq~nilsP~~Ggpiv~~~qD~v~g~ylLt~~d~~~~~~~~~ei~l~~~~~~~ 481 (808)
T COG0086 402 NADFDGDEMAVHVPASGEAAAEARGLMGTQMNILTPHYGGPIVAPIQDTVGGPYLLTIVDAKLPSTPVGEIYLKDEYADD 481 (808)
T ss_pred ccccCchhhhccccchHHHHHHHHHhhccccccccCCCCCceEeecceEEeccEEEEEecccCCCCcceEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765211122
Q ss_pred CCCCCcccCccCCcchHHHHHHhcCCC--ceEeeecccCCCCCCCcCCCC-CcEEEEecCeeeecccccccccCCcccHH
Q 000235 562 KVPQPTILKPRPLWTGKQVFNLIIPKQ--INLFRTAAWHADNDKGILTAG-DTLVRIEKGELLSGTLCKKTLGTSTGSLI 638 (1815)
Q Consensus 562 ~~~~pai~kp~~lwtGKqi~s~~lp~~--in~~~~~~~~~~~~~~~~~~~-d~~v~i~~gell~g~ldK~~~g~s~~~Li 638 (1815)
....+||.++..+|||||+++.++++. .++........ -....+..+ |..+.|.||+++.|++||...
T Consensus 482 ~e~~~ai~~~~~~~~~k~i~~~i~~~~~~~~i~~t~~~~~-~~~~~~~~~~d~~~~i~~~~l~~~~i~k~~~-------- 552 (808)
T COG0086 482 REKAEAIAKKIELTTGKVIVSTISPDLAELSIIVTTDGRR-IFNRGLPEDKDVLVKIVNGKLIKGVIDKKIV-------- 552 (808)
T ss_pred hhhhHHHhcccceeeeeEEEEEeeccCCcceEEEecchhh-hhhccCCcccceeeEEeccccceeeehhhHH--------
Confidence 356789999999999999999888874 44443211000 001112233 678999999999999998877
Q ss_pred HHHHHHhCHHHHH-HHHHHHHHHHHHHHHhcC-ceeeeccCccChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000235 639 HVIWEEVGPDAAR-KFLGHTQWLVNYWLLQNA-FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716 (1815)
Q Consensus 639 h~i~~~~G~~~a~-~~l~~~q~l~~~~l~~~G-fSigi~D~~~~~~~~~~~~~~i~~a~~~v~~~~~~~~~~~l~~~~~~ 716 (1815)
.++++||+.++. .+++.+.+|.+.|+...| |+++|+|.- ..+.+++.+.+.+|+.++.+++.+++.|.++..++.
T Consensus 553 -~i~~~~g~~~~~~~~~~~~dkl~~~~~~~~~~~~~~i~~~d--~~~~~~~~e~v~~ae~~v~~~i~~~~~g~lt~~~~~ 629 (808)
T COG0086 553 -TIYREYGPEVASKALVKLLDKLKNLGIKGIGGFGIGIGRKD--IEAEDEKDEIVIEAEGSVLKLILQYEEGDLTRTERN 629 (808)
T ss_pred -HHHHHhCchhhHHHHHHHHHHHHHhheeeeccceEEeeccc--ccchHHHHHHHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 689999998888 999999999999999988 999999875 334456789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHhcCCCCcccchhhhhhhccccccCCCccCCCCCCCCCCCCC
Q 000235 717 TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796 (1815)
Q Consensus 717 ~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~~eG~Rip~~~~~rtLp~f~ 796 (1815)
++.+.++.+++.++++++.+.++.+.+.+..+ +..|..+|++|+..|++||.+|+|||.+.|+|++.+ +||||.
T Consensus 630 ~i~e~~e~~~~e~l~~ai~~~~~~~~~~~g~~--~~~i~~m~~~Gs~~n~sq~~~~iG~~gv~g~r~~~~----~~~~Fe 703 (808)
T COG0086 630 NIVEIIEVLGIEALRNAIIEEIKITLEEQGLD--FVDIRHMGLSGARMNISQIVQLIGQQGVMGEKISVL----ARAAFE 703 (808)
T ss_pred CeEEEeehHHHHHHHHHHHHHHhhhHHhcCCc--chhHHHHhhhhhccCHHHHHHHhhhheeeccCCCcc----cccccc
Confidence 99999999999999999999999988888777 556666667777779999999999999999999888 999999
Q ss_pred CCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHhhceEEeecCeeecCCCceEEEEe
Q 000235 797 KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876 (1815)
Q Consensus 797 ~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g~iiQF~Y 876 (1815)
+.+..+++.|||+++|++||+|.|||||+|+|||||||||+|||+||||||||||++|||+|.||+|||++.+.++||.|
T Consensus 704 ~~~~~~~a~~~i~s~f~eGLt~~e~f~~~~ggR~GlvDTA~KTa~sGYl~RrLv~~~qdl~v~~d~~~~~g~~~~~~~~~ 783 (808)
T COG0086 704 VTVKHLEAEGPGESSFLEGLTENEYFGHPIGGRTGLVDTALKTADSGYLTRRLVDVAQDLIVQEDDCVTDGIGVVIQFEY 783 (808)
T ss_pred cccccceeeeeeecccCCCCCcceEEeecCccccchHHHhhhhcccCcceEEeechhcceEEEecCeEeecCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred cCCCCCceeee
Q 000235 877 GEDGMDSVWIE 887 (1815)
Q Consensus 877 GeDg~d~~~~e 887 (1815)
||||+|++...
T Consensus 784 ged~~~~~~~~ 794 (808)
T COG0086 784 GEDGEDLTERI 794 (808)
T ss_pred CccccCHHHHh
Confidence 99999986543
|
|
| >PRK02625 rpoC1 DNA-directed RNA polymerase subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-104 Score=964.53 Aligned_cols=479 Identities=29% Similarity=0.482 Sum_probs=370.8
Q ss_pred cccceEEEEcCCHHHHHhcc---------eeEEeeCccccCC--CCCCCCCCCCCCCCcCCCcc---------------c
Q 000235 13 AKVRMVQFGILSPDEIRQMS---------VVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMK---------------C 66 (1815)
Q Consensus 13 ~~i~~i~F~~~S~eeI~~~S---------v~eI~~~~~~~~~--~p~~gGl~D~rlG~~~~~~~---------------C 66 (1815)
.++..|+.+++|||+|++|| ++||++|+|+++. +|+.+||||.|+..+.+++. |
T Consensus 7 ~~~~~i~I~laSPe~I~~Ws~r~lpng~i~GeV~kpeTinyrT~KPE~dGLFCerIFGP~k~~eC~CGkyk~~~~~~~~C 86 (627)
T PRK02625 7 NRFDYVKIGLASPERIRQWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVRHRGIVC 86 (627)
T ss_pred cccceEEEEecCHHHHHHHHHhhcCCCceeeEECCCcccccCCCCCCCCCEeechhcCCccCcEEeCCCccccCcCCcCC
Confidence 46789999999999999999 9999999999997 99999999999955544444 5
Q ss_pred cccccCCCC---cCCccceeeccccccchhhhhHH-----------HHHhcccceecceeccCCchHHHHHHHHhcChHH
Q 000235 67 ETCTANMAE---CPGHFGHLELAKPMFHIGFMKTV-----------LSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132 (1815)
Q Consensus 67 ~TCg~~~~~---CpGHfGhIeL~~PV~h~~f~~~v-----------~~iL~~vC~~C~~l~~~~~~~~~~~~~~~~~~~~ 132 (1815)
+.||.+..+ ..-+||||+|+.||.|+||++.+ ++.|+.+.++-..+.+++..+.......+....
T Consensus 87 ~~CgvE~t~s~vRR~RMG~I~La~PV~HiWylk~~ps~i~~lL~~~~k~le~ivy~~~~~v~~~~~~~~~~~~~~~~~~- 165 (627)
T PRK02625 87 ERCGVEVTESRVRRHRMGFIKLAAPVTHVWYLKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGNHKNLKYKQLLTED- 165 (627)
T ss_pred CCCCcEecchhhhHhhcCceeecCCceEeeccCCCchHHHHHhCCCHHHhhheeeeeeEEEecCCCccchhhhhhhhhH-
Confidence 555554433 34799999999999999999953 567888887776777765433111111111111
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCCCcccccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccC
Q 000235 133 RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212 (1815)
Q Consensus 133 ~~~~i~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (1815)
.+.++.+..-. . +. +..+ +. -.++|+..-+-....+++..+....+.+... .
T Consensus 166 ~~~~~~~~~~~----~---~~-----~~~~-~~--~~~~Ga~ai~~lL~~~dl~~~~~~l~~~~~~-------------~ 217 (627)
T PRK02625 166 QWLEIEDQIYA----E---DS-----ELEG-EE--VVGIGAEALKRLLEDLNLEEEAEQLREEIAN-------------S 217 (627)
T ss_pred HHHHHHHHhcc----c---cc-----cccc-ch--hhhhhHHHHHHHHhhCCHHHHHHHHHHHHHh-------------c
Confidence 22222222110 0 00 0000 00 0224544433333444544333222211110 1
Q ss_pred CHHHHHHHHhhcChhhHHHhcCCCCCCCccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHc
Q 000235 213 TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERN 282 (1815)
Q Consensus 213 ~p~~v~~ilk~i~~~d~~~l~~~~~~~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~ 282 (1815)
+..+...++|+|.--+ .|.....+||||||++|||||+++||+ ||||++|++||++|++|+++...
T Consensus 218 ~~~~~~~~ikrl~~~~----~f~~~~~~PewmiL~~lPV~Pp~lRP~v~l~~g~~~~sDLn~ly~~II~rNn~L~~~~~~ 293 (627)
T PRK02625 218 KGQKRAKLIKRLRVID----NFIATGSRPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEI 293 (627)
T ss_pred chHHHHHHHHHHHHHH----HHHhcCCCccEEEEEeeecCCCcccCceEeCCCcccCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 1133345566664433 233456899999999999999999999 89999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhhccCCCCCCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccc
Q 000235 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362 (1815)
Q Consensus 283 g~~~~~i~~~~~~LQ~~V~~~~dn~~~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~ 362 (1815)
+++..++.+.|++||++|++||||++.|.|. ...++||+|||+|+||||+||||+|||||||||||||||+|||+|++|
T Consensus 294 ~~p~~ii~~~~~~LQ~aVd~liDn~~~g~~~-~~~~~rp~ksls~~LkGKeGRFR~NLlGKRVDySgRSVIspdP~L~l~ 372 (627)
T PRK02625 294 LAPEIIVRNEKRMLQEAVDALIDNGRRGRTV-VGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMH 372 (627)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCCc-ccccCCchhhHHHHhccCCccccccccccccccCCCceEeCCCCcccc
Confidence 9999999899999999999999999998765 344679999999999999999999999999999999999999999999
Q ss_pred cccChHHHhhhccCCcccchhHHHHHHHHHHcCCC-CCCCcccccEEEeCCCceeeccccccccccccccccEeeeeccc
Q 000235 363 QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH-PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441 (1815)
Q Consensus 363 evGvP~~~A~~LT~PE~Vt~~Ni~~l~~lv~ng~~-~~pg~~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~d 441 (1815)
|||||++||++||+| |||++|+ .+|.. ..++ |++++..+ -..+|.|+|||+|
T Consensus 373 e~GvP~~mA~eL~~P-----f~i~~L~---~~g~~~~i~~---ak~~i~~~----------------~~~~~~Vlr~v~~ 425 (627)
T PRK02625 373 QCGLPKEMAIELFQP-----FVIHRLI---RQGIVNNIKA---AKKLIQRA----------------DPEVWQVLEEVIE 425 (627)
T ss_pred cccChHHHHHhcCcH-----HhHHHHH---HcCchhhHHH---HHHHHHhc----------------CCcccEEEEEeec
Confidence 999999999999865 7888874 55542 2233 66554321 1246899999999
Q ss_pred CCeEEEecCCccccccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCC
Q 000235 442 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521 (1815)
Q Consensus 442 gD~VL~NRQPsLHk~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~ 521 (1815)
||+|||||||||||||||||++++++++||||||+||+||||||||||||||||||++|||||++||++++|++||++|+
T Consensus 426 gd~VLlNRqPTLHR~sIqAf~~~l~~~ktirlhplvC~~fNADFDGDeMnvHvPqS~~A~aEa~~Lm~~~~nilsP~~G~ 505 (627)
T PRK02625 426 GHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQAEARLLMLASNNILSPATGE 505 (627)
T ss_pred CcEEEecCCCccccccceeEeeEEcCCCeEEeccccCCcccCCcCCCeEEEecCCCHHHHHHHHHHhcCccceEEcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccccccccceecccCCC---------ccCHHHHHHH
Q 000235 522 PVMGIVQDTLLGCRKITKRDT---------FIEKDVFMNI 552 (1815)
Q Consensus 522 pi~g~~QD~l~g~~~lT~~d~---------f~~~~~~~~l 552 (1815)
|+++++||+|+|+|+||.+|. |-+.+|+...
T Consensus 506 Pi~~~~QD~llG~y~LT~~~~~~~~~~~~~f~~~~~~~~a 545 (627)
T PRK02625 506 PIVTPSQDMVLGCYYLTAENPGAQKGAGRYFASLEDVIMA 545 (627)
T ss_pred eeEeechhhhhheeeeeccCccccCCCCceeCCHHHHHHH
Confidence 999999999999999999983 4455655543
|
|
| >TIGR02387 rpoC1_cyan DNA-directed RNA polymerase, gamma subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-103 Score=954.62 Aligned_cols=466 Identities=28% Similarity=0.475 Sum_probs=364.0
Q ss_pred cceEEEEcCCHHHHHhcc---------eeEEeeCccccCC--CCCCCCCCCCCCCCcCCCccc---------------cc
Q 000235 15 VRMVQFGILSPDEIRQMS---------VVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKC---------------ET 68 (1815)
Q Consensus 15 i~~i~F~~~S~eeI~~~S---------v~eI~~~~~~~~~--~p~~gGl~D~rlG~~~~~~~C---------------~T 68 (1815)
+..|+.+++|||.|++|| ++||++|+|+++. +|+.+||||.|+..+.+++.| +.
T Consensus 2 ~~~i~I~laSPe~I~~Ws~r~lpng~i~GeV~kp~TinyrT~KPE~dGLFCerIFGP~k~~eC~CGkyk~~~~~~~~C~~ 81 (619)
T TIGR02387 2 FDYVKITIASPERVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVRHRGIVCER 81 (619)
T ss_pred CceEEEEecCHHHHHHHHHhhCCCCceeeEECCCcccccCCCCCCCCCEeechhcCCCcCcEEeCCCccccCcCCcCCCC
Confidence 567999999999999999 9999999999997 999999999999655555655 44
Q ss_pred cccCCCC---cCCccceeeccccccchhhhhHH-----------HHHhcccceecceeccCCchHHHHHHHHhcChHHHH
Q 000235 69 CTANMAE---CPGHFGHLELAKPMFHIGFMKTV-----------LSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134 (1815)
Q Consensus 69 Cg~~~~~---CpGHfGhIeL~~PV~h~~f~~~v-----------~~iL~~vC~~C~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (1815)
||.+..+ ..-+||||+|+.||.|+||++.+ ++.|+.+.++-+.+.+++.++.......+.. ...+
T Consensus 82 CgvE~t~s~vRR~RMG~I~La~PV~HiWylk~~ps~i~~lL~~~~k~le~i~y~~~~~v~~~~~~~~~~~~~~~~-~~~~ 160 (619)
T TIGR02387 82 CGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSYVSILLDMPLRDVEQIVYFNAYVVLNPGNAKNLKYKQLLT-EDQW 160 (619)
T ss_pred CCCEEchhhhHHHhcCceeccCcceeeeecCCCchHHHHHhCCCHHHhhheeeeeeEEEecCCCccchhhhhhhh-HHHH
Confidence 4433222 24799999999999999999953 5668888877767777664332111111111 1122
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCCCcccccccCCCCccchhhhhcccchhhhhHHhhccccccCCCCccchhcccCCH
Q 000235 135 KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTA 214 (1815)
Q Consensus 135 ~~i~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~gCg~~~p~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 214 (1815)
.++.+..-. . +. +... .....+|+..-+-....+++..+....+.+... .+.
T Consensus 161 ~~~~~~~~~----~---~~-----~~~~---~~~~~~Ga~ai~~lL~~~dl~~~~~~l~~~~~~-------------~~~ 212 (619)
T TIGR02387 161 LEIEDQIYA----E---DS-----ELEN---EEVVGIGAEALKQLLADLNLEEVAEQLREEING-------------SKG 212 (619)
T ss_pred HHHHHHhcc----c---cc-----cccc---ceeccchHHHHHHHHHhCCHHHHHHHHHHHHHh-------------hhh
Confidence 222222110 0 00 0000 001235554433333444444333222211110 111
Q ss_pred HHHHHHHhhcChhhHHHhcCCCCCCCccceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCC
Q 000235 215 ERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGA 284 (1815)
Q Consensus 215 ~~v~~ilk~i~~~d~~~l~~~~~~~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~ 284 (1815)
.+...++|+|.--+. |.....+||||||++|||||+++||+ ||||.+|++||++|++|+++...++
T Consensus 213 ~~~~~~~krl~~~~~----f~~~~~~PewmiL~~lPV~Pp~lRP~v~l~~g~~~~sDln~lyr~II~rNn~L~~~~~~~~ 288 (619)
T TIGR02387 213 QKRAKLIKRLRVIDN----FIATSSRPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILA 288 (619)
T ss_pred HHHHHHHHHHHHHHH----HHhcCCCcceEEEEecccCCcccCCceEeCCCcccCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334556677654432 33456899999999999999999999 8999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhhccCCCCCCCcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccc
Q 000235 285 PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364 (1815)
Q Consensus 285 ~~~~i~~~~~~LQ~~V~~~~dn~~~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~ev 364 (1815)
+..++.+.|++||++|++||||+..|.|. ..+++||+|||+|+||||+||||+|||||||||||||||+|||+|++|||
T Consensus 289 p~~i~~~~~~~LQ~aVd~lidn~~~g~~~-~~~~~rp~ksls~~LkGKeGRFR~nLlGKRVDySgRSVI~pdP~L~l~qv 367 (619)
T TIGR02387 289 PEIIVRNEKRMLQEAVDALIDNGRRGRTV-VGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQC 367 (619)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCCc-ccccCCchhhHHHHhccCCccccccccccccccCCCceecCCCCccccee
Confidence 99999899999999999999999988764 44567999999999999999999999999999999999999999999999
Q ss_pred cChHHHhhhccCCcccchhHHHHHHHHHHcCCC-CCCCcccccEEEeCCCceeeccccccccccccccccEeeeecccCC
Q 000235 365 GVPWSIALNLTYPETVTPYNIERLKELVEYGPH-PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGD 443 (1815)
Q Consensus 365 GvP~~~A~~LT~PE~Vt~~Ni~~l~~lv~ng~~-~~pg~~~A~~i~~~~g~~~~l~~~~~~~~~~L~~g~~V~Rhl~dgD 443 (1815)
|||++||++||+ ||||++| +.+|.. ...+ |++++...+ ...|.|+|||+|||
T Consensus 368 GvP~~mA~eLf~-----Pf~i~~L---~~~g~~~~i~~---ak~~i~~~~----------------~~v~~Vlr~v~~gd 420 (619)
T TIGR02387 368 GLPKEMAIELFQ-----PFVIHRL---IRQGIVNNIKA---AKKLIQRAD----------------DEIWSVLQEVITGH 420 (619)
T ss_pred cChHHHHHhcCc-----hHhHHHH---HhcCcccchHH---HHHHHHhcC----------------ChhHHHHHHHhcCC
Confidence 999999999986 5788877 446653 2233 776653321 13588999999999
Q ss_pred eEEEecCCccccccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCc
Q 000235 444 FVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523 (1815)
Q Consensus 444 ~VL~NRQPsLHk~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi 523 (1815)
+|||||||||||+|||||++++++++||||||+||+||||||||||||||||||++|||||++||++++||+||++|+|+
T Consensus 421 ~VLlNRqPTLHR~sIqAf~~~l~~~ktirlhplvC~~fNADFDGDeMnvHvPqS~eA~aEa~~Lm~~~~nilsP~~G~Pi 500 (619)
T TIGR02387 421 PVMLNRAPTLHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQTEARLLMLASNNVLSPATGEPI 500 (619)
T ss_pred EEEecCCCccchhcceeeeeEEecCCeEEECcccCCcccCCCCCceeeeecCCCHHHHHHHHHHhhchhcEEecCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccceecccCC
Q 000235 524 MGIVQDTLLGCRKITKRD 541 (1815)
Q Consensus 524 ~g~~QD~l~g~~~lT~~d 541 (1815)
++++||+|+|+|+||.++
T Consensus 501 ~~~~QD~llg~y~LT~~~ 518 (619)
T TIGR02387 501 VTPSQDMVLGCYYLTALN 518 (619)
T ss_pred Eeechhhhhhhheeeccc
Confidence 999999999999999987
|
The RNA polymerase gamma subunit, encoded by the rpoC1 gene, is found in cyanobacteria and corresponds to the N-terminal region the beta' subunit, encoded by rpoC, in other bacteria. The equivalent subunit in plastids and chloroplasts is designated beta', while the product of the rpoC2 gene is designated beta''. |
| >CHL00018 rpoC1 RNA polymerase beta' subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-101 Score=947.85 Aligned_cols=477 Identities=26% Similarity=0.418 Sum_probs=359.3
Q ss_pred cccceEEEEcCCHHHHHhcc---------eeEEeeCccccCC--CCCCCCCCCCCCCCcCCCccc---------------
Q 000235 13 AKVRMVQFGILSPDEIRQMS---------VVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKC--------------- 66 (1815)
Q Consensus 13 ~~i~~i~F~~~S~eeI~~~S---------v~eI~~~~~~~~~--~p~~gGl~D~rlG~~~~~~~C--------------- 66 (1815)
..+..|+.+++|||+|++|| |+||++|+|+++. +|+.+||||.|+..+.+++.|
T Consensus 5 ~~~~~i~I~laSPe~I~~Ws~r~lpng~ivGeV~kp~TinyrT~KPE~dGLFCErIFGP~k~~~C~CGkyk~~~~~~~~~ 84 (663)
T CHL00018 5 YKHQQLRIGLASPQQIRAWAERILPNGEIVGEVTKPYTIHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEDP 84 (663)
T ss_pred cCcCeEEEEecCHHHHHHHHHhhCCCCceeeEECCCccccccCCCCCCCCEeechhcCCCcCCEEeCCCccccCccccCC
Confidence 36789999999999999999 5999999999997 999999999999655566666
Q ss_pred ---cccccCCCC---cCCccceeeccccccchhhhhHH-----------HHHhcccceecceeccCCc-hH---HHHHHH
Q 000235 67 ---ETCTANMAE---CPGHFGHLELAKPMFHIGFMKTV-----------LSIMRSVCFNCSKILADED-DH---KFKQAL 125 (1815)
Q Consensus 67 ---~TCg~~~~~---CpGHfGhIeL~~PV~h~~f~~~v-----------~~iL~~vC~~C~~l~~~~~-~~---~~~~~~ 125 (1815)
+.||.+..+ ..-+||||+|+.||.|+||++.+ ++.|+.+.++=..+..+.. .. .++..+
T Consensus 85 ~~C~~CgVE~t~s~vRR~RMG~I~La~PV~HiWylk~~ps~i~~lL~~~~k~le~~vy~~~~~~~~~~~~~~~~~~~~~~ 164 (663)
T CHL00018 85 KFCEQCGVEFTDSRVRRYRMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLF 164 (663)
T ss_pred CccCCcCCEechhhhhHhhcCceeecCcceeehhhcCCchHHHHHhCCCHHHhhheeeeeeEEEEecCCCCChhhhhhhh
Confidence 333332221 23789999999999999999953 4567777766544444411 11 111111
Q ss_pred HhcChHHHHHHHHHHhhhccccCCCCCCCCCCCCCCcccccccCCCCccchhhhhcccchhh-------hhHHhhccccc
Q 000235 126 KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA-------EYKAQRKKNDD 198 (1815)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~gCg~~~p~i~k~~~~l~~-------~~~~~~~~~~~ 198 (1815)
. .....+.++....... .. . .. ......++|+..-+-....+++.. +|+...++. .
T Consensus 165 ~--~~~~~~~~~~~~~~~~---~~---~-------~~-~~~~~~~~Ga~ai~~lL~~ldL~~~~~~~~~~~~~~~~~~-~ 227 (663)
T CHL00018 165 E--YEIQSWKYSIPLFFST---QG---F-------DT-FRNREISTGAGAIREQLADLDLRIIIDNSLVEWKELGEEG-S 227 (663)
T ss_pred h--hhHHHHHHHHHHHhcc---cc---c-------cc-ccchhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhhcc-c
Confidence 1 0011122222211000 00 0 00 000112355543333333444322 232211100 0
Q ss_pred cCCCCccchhcccCCHHHHHHHHhhcChhhHHHhcCCCCCCCccceEEeecccCCCCCCCC----------chhHHHHHH
Q 000235 199 QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAM 268 (1815)
Q Consensus 199 ~~~~~~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~~~~~~~~Pe~~il~~lpVpP~~~RP~----------ddlT~~l~~ 268 (1815)
.+.+ .+.+.+ -.+...++|+|.--+. |.....+||||||++|||||+++||+ ||||.+|++
T Consensus 228 ~~~~----~~~~~~-~~~~~~l~kRl~~~~~----f~~~~~~PewmiL~~lPV~Pp~lRP~v~l~~g~~~~sDln~lyr~ 298 (663)
T CHL00018 228 TGNE----WEDRKI-GRRKDFLVRRIKLAKH----FIRTNIEPEWMVLCLLPVLPPELRPIIQLDGGKLMSSDLNELYRR 298 (663)
T ss_pred cccc----hhhhhh-HHHHHHHHHHHHHHHH----HHhcCCCccEEEEEeeeeCCCcccCceEcCCCcccCCChHHHHHH
Confidence 0000 001100 1122234566654443 22346899999999999999999998 899999999
Q ss_pred HHHHHHHHHHHHHc--CCChhhHHHHHHHHHHHHHhhccCCCCCCCcccccCCCChhhhhhhhhhcccccccccCCCCCC
Q 000235 269 IIRHNENLRRQERN--GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346 (1815)
Q Consensus 269 Ii~~N~~lk~~~~~--g~~~~~i~~~~~~LQ~~V~~~~dn~~~~~p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVd 346 (1815)
||.+|++|+++... ++|..++.+.|++||++|++||||++.|.+... .++||+|||+|+||||+||||+||||||||
T Consensus 299 II~rNn~L~~~~~~~~~~p~~~i~~~~~~LQ~aVd~lidn~~~g~~~~~-~~~r~~ksls~~LkGK~GrFR~NLlGKRVD 377 (663)
T CHL00018 299 VIYRNNTLTDLLTTSRSTPGELVMCQKKLLQEAVDALLDNGIRGQPMRD-GHNKPYKSFSDVIEGKEGRFRENLLGKRVD 377 (663)
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCcccc-CCCCCCCCccccccCcCccccccccccccc
Confidence 99999999999888 889999999999999999999999998876533 357999999999999999999999999999
Q ss_pred CCCceeecCCCCcccccccChHHHhhhccCCcccchhHHHHHHHHHHcCCCCCCCcccccEEEeCCCceeeccccccccc
Q 000235 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426 (1815)
Q Consensus 347 fsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~~Ni~~l~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~~~ 426 (1815)
|||||||+|||+|++||||||..||++||+|+ + +++|+.+|+.... ..|++++...
T Consensus 378 ySgRSVIvpdP~L~l~e~GlP~~mA~eL~~P~-----~---i~~Li~~~~~~~~--~~Ak~~i~~~-------------- 433 (663)
T CHL00018 378 YSGRSVIVVGPSLSLHQCGLPREIAIELFQPF-----V---IRGLIRQHLASNI--RAAKSKIREK-------------- 433 (663)
T ss_pred cCCCceecCCCcccccccCChHHHHHHcCcHH-----H---HHHHHhcCccccH--HHHHHHHHhc--------------
Confidence 99999999999999999999999999999985 3 4667888876321 2266554321
Q ss_pred cccccccEeeeecccCCeEEEecCCccccccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHHHHHHH
Q 000235 427 HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 506 (1815)
Q Consensus 427 ~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~ 506 (1815)
...+|+|+|||+|||+|||||||||||||||||++++++++||||||+||+||||||||||||||||||++|||||+.
T Consensus 434 --~~~~~~Vlr~v~~gd~VLlNRqPTLHR~sIqAf~~~L~~gktIrLhplvC~~fNADFDGDqMnvHvPqS~eA~aEa~~ 511 (663)
T CHL00018 434 --EPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARL 511 (663)
T ss_pred --CCcccEeeeehhcCceeeecCCCcccccccceeeEEecCCCeEEeCcccCCcccCCccCcEEEEecCCCHHHHHHHHH
Confidence 236899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCccccCCCCCCceeccccccccceecccCCC
Q 000235 507 LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542 (1815)
Q Consensus 507 l~~~~~~i~sp~~g~pi~g~~QD~l~g~~~lT~~d~ 542 (1815)
||++.+||+||++|+|+++++||+|+|+|+||.+|.
T Consensus 512 Lm~~~~nilsP~~G~Pi~~~~QD~ilG~y~LT~~~~ 547 (663)
T CHL00018 512 LMFSHMNLLSPAIGDPISVPSQDMLLGLYVLTIGNR 547 (663)
T ss_pred HhcCccceeEcCCCceeEeechhhhhhhheecccCC
Confidence 999999999999999999999999999999999884
|
|
| >cd02584 RNAP_II_Rpb1_C Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-95 Score=872.44 Aligned_cols=374 Identities=70% Similarity=1.112 Sum_probs=345.9
Q ss_pred hccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhhcccCCCC
Q 000235 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123 (1815)
Q Consensus 1044 ~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ikTP 1123 (1815)
|++++++|+|++++|+.||.+++|+||||||+|||||||||+|||||||||||||++|||||||||||||||++|+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ge~vg~~aaQSiGEP~TQmTLnTFH~AGVas~NVTlGVPRLkEIInasK~ikTP 80 (410)
T cd02584 1 YRLNKEAFDWILGEIETRFNRSLVHPGEMVGTIAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTP 80 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCCcchhhhhhcCCchhcccccccccccccccccccCccchHHHhhcccCCCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCcchHHHHHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEEEE
Q 000235 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIE 1203 (1815)
Q Consensus 1124 ~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~ 1203 (1815)
+|+|+|.++++.|++.|+.++.+||+++|+||+.+++++|||+..++++++|.+|++.||+++|++......++|++|++
T Consensus 81 ~~tv~L~~~~~~d~~~A~~v~~~IE~t~l~dv~~~~~i~ydp~~~~~~i~~d~~~i~~~~~~~d~~~~~~~~~~~~lrl~ 160 (410)
T cd02584 81 SLTVYLEPGFAKDEEKAKKIQSRLEHTTLKDVTAATEIYYDPDPQNTVIEEDKEFVESYFEFPDEDVEQDRLSPWLLRIE 160 (410)
T ss_pred eEEEEecCcccchHHHHHHHHhheeEeEHHHhhhheEEEecCcccceeecccHHHHHHhhccCcccccccccCCeeEEEE
Confidence 99999999988899999999999999999999999999999999999999999999999999999887788999999999
Q ss_pred echhhhhcccCCHHHHHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccc----
Q 000235 1204 LNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLT---- 1279 (1815)
Q Consensus 1204 l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~---- 1279 (1815)
||+++|.++++++++|+.+|+..+++++.++.+++|.+++++++|+....++.. ++.+++.|+.+++..+|.
T Consensus 161 ld~~~~~~~~i~~~~i~~~i~~~~~~~~~v~~~~~~~~~~~iri~~~~~~~~~~----~~~~~~~~l~~~~~~~l~~i~l 236 (410)
T cd02584 161 LDRKKMTDKKLSMEQIAKKIKEEFKDDLNVIFSDDNAEKLVIRIRIINDDEEKE----EDSEDDVFLKKIESNMLSDMTL 236 (410)
T ss_pred ECHHHHHHcCCCHHHHHHHHHHhcCCCeEEEEcCCCcceeEEEEEecCcccccc----ccchhHHHHHHHHHhhCCCcEE
Confidence 999999999999999999999999989999888888888888988765331111 111234455554432221
Q ss_pred --------------------------------cceecccchhhhhccccccccccccccHHHHHHhhcHHHHHHHHHHHH
Q 000235 1280 --------------------------------EMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327 (1815)
Q Consensus 1280 --------------------------------~~~~~G~nl~~vl~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei 1327 (1815)
.+.++|+||.++|++++||++||+||||+||+++|||||||++|++||
T Consensus 237 ~Gi~~I~r~~i~~~~~~~~~~~~g~~~~~~~~~l~teG~nl~~v~~~~~Vd~~rt~sNdI~ei~~~lGIEAaR~~ii~Ei 316 (410)
T cd02584 237 KGIEGIRKVFIREENKKKVDIETGEFKKREEWVLETDGVNLREVLSHPGVDPTRTTSNDIVEIFEVLGIEAARKALLKEL 316 (410)
T ss_pred eCCCCceEEEEEcCCceEecCCCCcccCCcceEEEecCcCHHHHhCCCCCccccCEeCCHHHHHHhcCHHHHHHHHHHHH
Confidence 256678999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCC
Q 000235 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQ 1407 (1815)
Q Consensus 1328 ~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~ 1407 (1815)
+.||+.||++||+|||+||||+||++|++++||||||++.+.|||++||||+|+++|++||++|+.|+|+|||||||+|+
T Consensus 317 ~~v~~~~Gi~Vd~RHl~LiaD~MT~~G~~~~i~R~Gi~~~~~S~l~~aSFE~t~~~L~~AA~~g~~D~l~gvse~Ii~G~ 396 (410)
T cd02584 317 RNVISFDGSYVNYRHLALLCDVMTQRGHLMAITRHGINRQDTGPLMRCSFEETVDILLEAAAFGETDDLKGVSENIMLGQ 396 (410)
T ss_pred HHHHHhcCCccCHHHHHHHHHHHhhceEEeeEeeeeeeccCCChhhhccchhHHHHHHHHHhcCCCCcCCCchHheeecC
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccccCccceeeccc
Q 000235 1408 LAPIGTGDCSLYLN 1421 (1815)
Q Consensus 1408 ~~p~GTG~fdll~~ 1421 (1815)
++|+|||+|||++|
T Consensus 397 ~~~~GTG~f~l~~d 410 (410)
T cd02584 397 LAPIGTGCFDLLLD 410 (410)
T ss_pred ccccccceEEEEeC
Confidence 99999999999986
|
RNA polymerase II (RNAP II) is a large multi-subunit complex responsible for the synthesis of mRNA. RNAP II consists of a 10-subunit core enzyme and a peripheral heterodimer of two subunits. The largest core subunit (Rpb1) of yeast RNAP II is the best characterized member of this family. Structure studies suggest that RNAP complexes from different organisms share a crab-claw-shape structure. In yeast, Rpb1 and Rpb2, the largest and the second largest subunits, each makes up one clamp, one jaw, and part of the cleft. Rpb1 interacts with Rpb2 to form the DNA entry and RNA exit channels in addition to the catalytic center of RNA synthesis. The C-terminal domain of Rpb1 makes up part of the foot and jaw structures. |
| >smart00663 RPOLA_N RNA polymerase I subunit A N-terminus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-93 Score=823.62 Aligned_cols=284 Identities=60% Similarity=1.001 Sum_probs=273.1
Q ss_pred cceEEeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHhhccCCCCCC
Q 000235 242 DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311 (1815)
Q Consensus 242 e~~il~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~LQ~~V~~~~dn~~~~~ 311 (1815)
+||||++|||||+++||+ ||||.+|.+||++|+.|++..+.|++.+++.+.|..||.+|++||||+ +.
T Consensus 1 e~fil~~lpVpP~~~RP~v~~~~~~~~eddlt~~l~~Ii~~N~~L~~~~~~~~~~~~~~~~~~~LQ~~v~~~~d~~--~~ 78 (295)
T smart00663 1 EWMILTVLPVPPPCLRPSVSLDGGRFAEDDLTHLLRDIIKRNNRLKRLLELGAPEHIIRNEKRLLQEAVDTLFDNE--GL 78 (295)
T ss_pred CeEEEeccccCCCCCCCcEEeCCCcccCCcHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHccC--CC
Confidence 799999999999999998 899999999999999999999999999999999999999999999998 44
Q ss_pred CcccccCCCChhhhhhhhhhcccccccccCCCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccchhHHHHHHHH
Q 000235 312 PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKEL 391 (1815)
Q Consensus 312 p~~~~~~~~p~k~i~qrLkgK~Gr~R~nlmGKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~~Ni~~l~~l 391 (1815)
+.+.++++++++||+|||+||+||||+|||||||||||||||+|||+|++||||||..||++||+||.||.||+++|++|
T Consensus 79 ~~~~~~~~~~~~~i~~~l~gK~G~~R~nllGKRvd~s~RsVI~pdP~l~~~evgiP~~~A~~Lt~pe~v~~~n~~~l~~l 158 (295)
T smart00663 79 PRARQKSGRPLKSLSQRLKGKEGRFRQNLLGKRVDFSARSVITPDPNLKLNEVGVPKEIALELTFPEIVTPLNIDKLRKL 158 (295)
T ss_pred cccccCCCCCcccccccccCcCCccccccccccccccCceEEeCCCCcceeEeeCCHHHHHhCCcCEEEhHHHHHHHHHH
Confidence 55566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCcccccEEEeCCCceeeccccccc-cccccccccEeeeecccCCeEEEecCCccccccccceeEEeecCCe
Q 000235 392 VEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS-SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470 (1815)
Q Consensus 392 v~ng~~~~pg~~~A~~i~~~~g~~~~l~~~~~~-~~~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk~Simah~vkv~~~~t 470 (1815)
|.||+ || |+||++ |.+++|++.++. ....|++||+|+|||+|||+|||||||||||+|||||+|||++++|
T Consensus 159 v~ng~---pg---a~~i~~--g~~~~l~~~~~~~~~~~l~~g~~v~r~l~dgd~Vl~NRqPsLHr~si~a~~v~v~~~~t 230 (295)
T smart00663 159 VRNGP---NG---AKYIIR--GKKTNLKLAKRSKIAKHLKIGDIVERHVIDGDVVLFNRQPTLHRMSIQAHRVRVLEGKT 230 (295)
T ss_pred HhcCC---CC---ceEEEe--CcEEEchhhhhHHHHhcCccccEeheehhcCCEEEEecCCccccccceeEEEEEecCce
Confidence 99999 99 999997 888999887654 5667899999999999999999999999999999999999999999
Q ss_pred eeecccCCCCCCCCCCcCccccccCCCHhHHHHHHHHccCCCccccCCCCCCceeccccccccce
Q 000235 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535 (1815)
Q Consensus 471 ~rln~~vc~pyNADFDGDEMn~h~Pqs~~araE~~~l~~~~~~i~sp~~g~pi~g~~QD~l~g~~ 535 (1815)
|||||+||+||||||||||||+|+|||++||||+++||++.+|++||++|+|++|++||+|+|+|
T Consensus 231 ir~n~~~c~~fNADFDGDeMnih~pqs~~a~aEa~~Lm~~~~~~~sp~~g~p~~~~~QD~l~g~~ 295 (295)
T smart00663 231 IRLNPLVCSPYNADFDGDEMNLHVPQSLEARAEARELMLVPNNILSPKNGKPIIGPIQDMLLGLY 295 (295)
T ss_pred EEecCccCCcccCCcCCCEEEEecCCCHHHHHHHHHHhhhhhccccCCCCCeeEeeecceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
|
|
| >TIGR02389 RNA_pol_rpoA2 DNA-directed RNA polymerase, subunit A'' | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-87 Score=794.95 Aligned_cols=331 Identities=38% Similarity=0.582 Sum_probs=297.1
Q ss_pred HhhccCHH-HHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhhcccC
Q 000235 1042 KEHRLTRE-AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120 (1815)
Q Consensus 1042 ~~~~l~~~-~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~i 1120 (1815)
.+++++++ +|+|++++|+.||.+++|+||||||+|||||||||+|||||||||||||++|||||||||||||||++|+|
T Consensus 15 ~~~~~~~~~~~~~~l~~i~~ky~~alv~PGeaVG~IAAQSIGEP~TQMTLnTFH~AGVas~nVTlGVPRlkEIINa~k~i 94 (367)
T TIGR02389 15 KKREISDKEELDEIIKRVEEEYLRSLIDPGEAVGIVAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRLIEIVDARKTP 94 (367)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhcCCCccccchhhhhhcCCccccccccccccccccccCccccchhHHHHhhcccCC
Confidence 56788888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCcchHHHHHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEE
Q 000235 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLL 1200 (1815)
Q Consensus 1121 kTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l 1200 (1815)
|||+|+|||.++.+.+++.|++++.+||+++|+||+++++++|+ .|++
T Consensus 95 ~TP~~ti~L~~~~~~~~~~a~~v~~~iE~t~l~dv~~~~~~~~~--------------------------------~~~l 142 (367)
T TIGR02389 95 STPSMTIYLEDEYEKDREKAEEVAKKIEATKLEDVAKDISIDLA--------------------------------DMTV 142 (367)
T ss_pred CCCeEEEEecCcchhhHHHHHHHHHHhhheeHHHHHhhhheecc--------------------------------CcEE
Confidence 99999999999988889999999999999999999987775432 4689
Q ss_pred EEEechhhhhcccCCHHHHHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhcc--
Q 000235 1201 RIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML-- 1278 (1815)
Q Consensus 1201 rl~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-- 1278 (1815)
+++||+++|.++++++++|.++|.+.++....++. .++..++++...+. ...++.++..++
T Consensus 143 ~i~ld~~~l~~~~i~~~~i~~~i~~~~~~~~~~~~----~~~~~i~i~~~~~~-------------~~~l~~l~~~l~~~ 205 (367)
T TIGR02389 143 IIELDEEQLKERGITVDDVEKAIKKAKLGKVIEID----MDGNTITIKPPKPS-------------LKELRKLKEKIKNL 205 (367)
T ss_pred EEEECHHHHHhcCCCHHHHHHHHHHhcccccceee----cCCCEEEEEecCch-------------HHHHHHHHHHhhhc
Confidence 99999999999999999999999887655544331 23456777654211 112333332221
Q ss_pred -------------------ccceecccchhhhhccccccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCccccc
Q 000235 1279 -------------------TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339 (1815)
Q Consensus 1279 -------------------~~~~~~G~nl~~vl~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn 1339 (1815)
..+.++|+||+++|.+++||++|++||||+||+++|||||||++|++||+.||+.||++||
T Consensus 206 ~v~Gi~gI~r~~i~~~~~~~~l~teG~nl~~v~~~~~VD~~rt~sNdI~ei~~~lGIEAaR~~Ii~Ei~~v~~~~Gi~Vd 285 (367)
T TIGR02389 206 HIKGIKGIKRVVIRKEGDEYVIYTEGSNLKEVLKLEGVDKTRTTTNDIHEIAEVLGIEAARNAIIEEIKRTLEEQGLDVD 285 (367)
T ss_pred eEeCCCCceEEEEECCCCeEEEEEeccCHHHHHcCCCCccccCccCCHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCeec
Confidence 1367788999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhhccceecccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccceeec
Q 000235 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLY 1419 (1815)
Q Consensus 1340 ~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fdll 1419 (1815)
+|||+||||+||++|++++||||||++.+.|||++||||+|+++|++||++|++|+|+|||||||+|+++|+|||+|||+
T Consensus 286 ~RHl~LiaD~MT~~G~~~~i~R~Gi~~~~~S~l~~aSFE~t~~~L~~AA~~g~~D~l~gvse~Ii~G~~~~~GTG~~~l~ 365 (367)
T TIGR02389 286 IRHLMLVADLMTWDGEVRQIGRHGISGEKASVLARAAFEVTVKHLLDAAIRGEVDELAGVIENIIVGQPIPLGTGDVDLV 365 (367)
T ss_pred HHHHHHHHHHhcCCceEEeccccccccCCCCHHHhcChHhHHHHHHHHhhcCCCCcCCChHHHhhcCCCcCCcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 000235 1420 LN 1421 (1815)
Q Consensus 1420 ~~ 1421 (1815)
++
T Consensus 366 ~~ 367 (367)
T TIGR02389 366 MD 367 (367)
T ss_pred eC
Confidence 74
|
This family consists of the archaeal A'' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein. |
| >cd06528 RNAP_A'' A'' subunit of Archaeal RNA Polymerase (RNAP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-85 Score=778.66 Aligned_cols=334 Identities=42% Similarity=0.620 Sum_probs=298.2
Q ss_pred HHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhhc
Q 000235 1038 KRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117 (1815)
Q Consensus 1038 ~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~a 1117 (1815)
++++.++++++++|+|++++++.||.+++|+||||||+|||||||||+|||||||||||||++|||||||||||||||++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ge~vG~iaAQSiGEP~TQMTLnTFH~AGVas~nVTlGVPRlkEIIna~ 87 (363)
T cd06528 8 EEVLKEHGLTLSEAEEIIKEVLREYLRSLIEPGEAVGIVAAQSIGEPGTQMTLRTFHYAGVAEINVTLGLPRLIEIVDAR 87 (363)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCccccceeeeecCccceecccccccccccccccCccccccHHHHhhcc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEeCCCCcchHHHHHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCC
Q 000235 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISP 1197 (1815)
Q Consensus 1118 k~ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~ 1197 (1815)
|+||||+|+|+|.++.+.+++.|++++.+||+++|+||++++++.++ .
T Consensus 88 K~i~TP~mti~L~~~~~~~~~~a~~v~~~iE~t~l~di~~~~~i~~~--------------------------------~ 135 (363)
T cd06528 88 KEPSTPTMTIYLEEEYKYDREKAEEVARKIEETTLENLAEDISIDLF--------------------------------N 135 (363)
T ss_pred cCCCCceEEEEecCcchhhHHHHHHHHHhhceeEHHHhhhheEEecc--------------------------------C
Confidence 99999999999999888889999999999999999999998887421 3
Q ss_pred cEEEEEechhhhhcccCCHHHHHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhc
Q 000235 1198 WLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNM 1277 (1815)
Q Consensus 1198 ~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1277 (1815)
|+++++||+++|.++++++++|.++|.+.++.++.+ +++.. ++ +.... + .+..+|+.++..+
T Consensus 136 ~~l~i~ld~~~l~~~~l~~~~i~~~i~~~~~~~~~~---~~~~~---~~--~~~~~--~--------~~~~~l~~l~~~l 197 (363)
T cd06528 136 MRITIELDEEMLEDRGITVDDVLKAIEKLKKGKVGE---EGDVT---LI--VLKAE--E--------PSIKELRKLAEKI 197 (363)
T ss_pred cEEEEEECHHHHHHcCCCHHHHHHHHHHhcCCcccc---cCCcc---EE--EEcCC--c--------chHHHHHHHHHhh
Confidence 889999999999999999999999998877665432 11111 11 11110 0 0123444444333
Q ss_pred c---------------------ccceecccchhhhhccccccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcc
Q 000235 1278 L---------------------TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336 (1815)
Q Consensus 1278 l---------------------~~~~~~G~nl~~vl~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi 1336 (1815)
+ ..+.++|+||+++|.+++||++|++||||+||+++|||||||++|++||+.||+.||+
T Consensus 198 ~~~~v~Gi~gI~r~~i~~~~~~~~l~teG~nl~~v~~~~~Vd~~rt~sNdI~ei~~~lGIEAaR~~ii~Ei~~v~~~~Gi 277 (363)
T cd06528 198 LNTKIKGIKGIKRVIVRKEEDEYVIYTEGSNLKAVLKVEGVDPTRTTTNNIHEIEEVLGIEAARNAIINEIKRTLEEQGL 277 (363)
T ss_pred cccEEeCCCCceEEEEecCCceEEEEecCcCHHHHhcCCCCcccccccCCHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Confidence 2 1356788999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhhccceecccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccce
Q 000235 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416 (1815)
Q Consensus 1337 ~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~f 1416 (1815)
+||+|||+||||+||++|+++++||+||++.+.|||++||||+|+++|++||++|+.|+|.|||||||+||++|+|||+|
T Consensus 278 ~Vd~rHl~LiaD~MT~~G~~~~i~R~gi~~~~~S~L~~aSFE~t~~~L~~AA~~g~~D~l~gvse~Ii~G~~~~~GTG~~ 357 (363)
T cd06528 278 DVDIRHIMLVADIMTYDGEVRQIGRHGIAGEKPSVLARAAFEVTVKHLLDAAVRGEVDELRGVIENIIVGQPIPLGTGDV 357 (363)
T ss_pred eecHHHHHHHHHHhccCCceecccchhhcCCCCChhhhCchhhHHHHHHHHHhcCCCCcCCCcHHHeeeCCCCCCcCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccc
Q 000235 1417 SLYLN 1421 (1815)
Q Consensus 1417 dll~~ 1421 (1815)
||++|
T Consensus 358 ~l~~d 362 (363)
T cd06528 358 ELTMD 362 (363)
T ss_pred EEEec
Confidence 99987
|
Archaeal RNA polymerase (RNAP), like bacterial RNAP, is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. The relative positioning of the RNAP core is highly conserved between archaeal RNAP and the three classes of eukaryotic RNAPs. In archaea, the largest subunit is split into two polypeptides, A' and A'', which are encoded by separate genes in an operon. Sequence alignments reveal that the archaeal A'' subunit corresponds to the C-terminal one-third of the RNAPII largest subunit (Rpb1). In subunit A'', several loops in the jaw domain are shorter. The RNAPII Rpb1 interacts with the second-largest subunit (Rpb2) to form the DNA entry and RNA exit channels in addition to the catalytic center of RNA synthesis. |
| >PRK14897 unknown domain/DNA-directed RNA polymerase subunit A'' fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-84 Score=784.19 Aligned_cols=331 Identities=36% Similarity=0.555 Sum_probs=290.5
Q ss_pred HHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhhccc
Q 000235 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119 (1815)
Q Consensus 1040 ~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ 1119 (1815)
++.+++++.++|+|++++|+.+|.+++|+||||||+|||||||||+|||||||||||||+++|||||||||+||||++|+
T Consensus 152 ~~~~~~l~~~~~~~i~~ei~~~y~~~~v~pGE~VG~IAAQSIGEP~TQMTLnTFH~AGVas~NVTlGVPRLkEIINa~K~ 231 (509)
T PRK14897 152 AMKKKELSDDEYEEILRRIREEYERARVDPYEAVGIVAAQSIGEPGTQMTMRTFHYAGVAEMNVTLGLPRLIEIVDARKK 231 (509)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhCCccccccccccccccccccccccCcchhHHHhhcccC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCCCcchHHHHHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcE
Q 000235 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWL 1199 (1815)
Q Consensus 1120 ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~ 1199 (1815)
|+||+|+|+|.++++.|++.|++++.+||+++|+||+..+ .. ...|.
T Consensus 232 isTP~mtiyL~~~~~~d~e~A~~V~~~IE~ttL~dv~~~~--------------------~d-------------~~~~~ 278 (509)
T PRK14897 232 PSTPTMTIYLKKDYREDEEKVREVAKKIENTTLIDVADII--------------------TD-------------IAEMS 278 (509)
T ss_pred CCCceEEEEecCcccccHHHHHHHHhhheeeEHHHHHHHH--------------------HH-------------hccce
Confidence 9999999999999888999999999999999999997521 11 12467
Q ss_pred EEEEechhhhhcccCCHHHHHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhcc-
Q 000235 1200 LRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML- 1278 (1815)
Q Consensus 1200 lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l- 1278 (1815)
++++||+++|.++++++++|.++|.+.. ...+..+++ .+++..... ....++++...+.
T Consensus 279 i~i~Ld~~~l~~~~l~~~~I~~~I~~~~---~~~~~~~~~----~I~i~~~~~-------------~~~~L~~l~~~l~~ 338 (509)
T PRK14897 279 VVVELDEEKMKERLIEYDDILAAISKLT---FKTVEIDDG----IIRLKPQQP-------------SFKKLYLLAEKVKS 338 (509)
T ss_pred EEEEECHHHHHHcCCCHHHHHHHHHhcc---ceEEecCCC----EEEEEeCch-------------HHHHHHHHHHHhhc
Confidence 9999999999999999999999997632 122223322 233333210 0111222211110
Q ss_pred ----------------------ccceecccchhhhhccccccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcc
Q 000235 1279 ----------------------TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336 (1815)
Q Consensus 1279 ----------------------~~~~~~G~nl~~vl~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi 1336 (1815)
..+.++|+||.++|++++||++||+||||+||+++|||||||++|++||+.||+.||+
T Consensus 339 i~I~GipgI~r~~i~~~~~~~~~~L~TeG~NL~~vl~~~~VD~~rt~SNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi 418 (509)
T PRK14897 339 LTIKGIKGIKRAIARKENDERRWVIYTQGSNLKDVLEIDEVDPTRTYTNDIIEIATVLGIEAARNAIIHEAKRTLQEQGL 418 (509)
T ss_pred cEEeCCCCccEEEEecCCCCceeEEEeeccCHHHHhcCCCcccccCccCCHHHHHHhcCHHHHHHHHHHHHHHHHHhcCC
Confidence 1377889999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhhccceecccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccce
Q 000235 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416 (1815)
Q Consensus 1337 ~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~f 1416 (1815)
+||+|||+||||+||++|.+++||||||++.+.|||++||||+|+++|++||++|++|.|+|||||||+||++|+|||+|
T Consensus 419 ~Vd~RHL~LIAD~MT~~G~v~~i~R~Gi~~~~~SpL~rASFE~T~~~L~~AA~~Ge~D~L~GvsenII~G~~ipvGTG~f 498 (509)
T PRK14897 419 NVDIRHIMLVADMMTFDGSVKAIGRHGISGEKSSVLARAAFEITGKHLLRAGILGEVDKLAGVAENIIVGQPITLGTGAV 498 (509)
T ss_pred cccHHHHHHHHHHhCcCCcccccccccccccCCCHHHhcchHhHHHHHHHHhhcCCCCcCCChHHhhhcCCccCCcCceE
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred eeccchh
Q 000235 1417 SLYLNDE 1423 (1815)
Q Consensus 1417 dll~~~~ 1423 (1815)
||+++..
T Consensus 499 dL~~~~~ 505 (509)
T PRK14897 499 SLVYKGR 505 (509)
T ss_pred EEEecCC
Confidence 9998764
|
|
| >PRK04309 DNA-directed RNA polymerase subunit A''; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-83 Score=769.80 Aligned_cols=331 Identities=41% Similarity=0.623 Sum_probs=296.1
Q ss_pred HhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhhcccCC
Q 000235 1042 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121 (1815)
Q Consensus 1042 ~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ik 1121 (1815)
.++++++++|+|++++|+.||.+++|+||||||+|||||||||+|||||||||||||+++||||||||||||||++|++|
T Consensus 31 ~~~~l~~~~~~~~~~~i~~~y~~~~v~pGe~VG~iaAQsIGEP~TQMTL~TFH~AGva~~nVTlGvPRlkEIina~K~~~ 110 (383)
T PRK04309 31 EERKLTEEEVEEIIEEVVREYLRSLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAEINVTLGLPRLIEIVDARKEPS 110 (383)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhhccchhhhcccccccccCccccCcccCchhHHHHHhcccCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeCCCCcchHHHHHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEE
Q 000235 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLR 1201 (1815)
Q Consensus 1122 TP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lr 1201 (1815)
||+|+++|.+++..|++.|++|+.+||+++|+||+.++++.|+ .|+++
T Consensus 111 TP~~tv~L~~~~~~d~~~a~~v~~~iE~t~L~~v~~~i~~~~~--------------------------------~~~l~ 158 (383)
T PRK04309 111 TPMMTIYLKDEYAYDREKAEEVARKIEATTLENLAKDISVDLA--------------------------------NMTII 158 (383)
T ss_pred CCeEEEEecCcccccHHHHHHHHhheeeeEHhhhhhheEeccC--------------------------------CcEEE
Confidence 9999999999888889999999999999999999987775321 25799
Q ss_pred EEechhhhhcccCCHHHHHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhcc---
Q 000235 1202 IELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML--- 1278 (1815)
Q Consensus 1202 l~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l--- 1278 (1815)
++||++++.+++|++++|.++|...++.++.+. .+.+.++++ .. +...++++...++
T Consensus 159 i~ld~~~i~~~~l~~~~I~~~i~~~~~~~~~~~-----~~~i~i~~~--~~-------------~~~~l~~l~~~l~~~~ 218 (383)
T PRK04309 159 IELDEEMLEDRGLTVDDVKEAIEKKKGGEVEIE-----GNTLIISPK--EP-------------SYRELRKLAEKIRNIK 218 (383)
T ss_pred EEECHHHHHHcCCCHHHHHHHHHHhcCcceecc-----CCeEEEEec--Cc-------------hHHHHHHHHHHhcccE
Confidence 999999999999999999999988776654322 223334433 10 1123333332221
Q ss_pred ------------------ccceecccchhhhhccccccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccc
Q 000235 1279 ------------------TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNY 1340 (1815)
Q Consensus 1279 ------------------~~~~~~G~nl~~vl~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~ 1340 (1815)
..+.++|+||.++|.+++||++|++||||+||+++|||||||++|++||+.||+.||++||+
T Consensus 219 vkGi~gI~r~~i~~~~~~~~l~teG~nl~~v~~~~~VD~~rt~sNdI~ei~~vlGIEAAR~~ii~Ei~~v~~~~Gi~Vd~ 298 (383)
T PRK04309 219 IKGIKGIKRVIIRKEGDEYVIYTEGSNLKEVLKVEGVDATRTTTNNIHEIEEVLGIEAARNAIIEEIKNTLEEQGLDVDI 298 (383)
T ss_pred EECCCCceEEEEecCCCeEEEEEcccCHHHHhcCCCEeeccccCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHcCCeecH
Confidence 13667889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhccceecccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccceeecc
Q 000235 1341 RHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1420 (1815)
Q Consensus 1341 RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fdll~ 1420 (1815)
|||+||||+||++|++++||||||++.+.|||++||||+|+++|++||++|++|+|+|||||||+|+++|+|||+|||++
T Consensus 299 rHl~LiaD~MT~~G~~~~i~R~Gi~~~~~S~l~~aSFE~T~~~L~~AA~~g~~D~l~gvse~Ii~G~~~~~GTG~~~l~~ 378 (383)
T PRK04309 299 RHIMLVADMMTWDGEVRQIGRHGVSGEKASVLARAAFEVTVKHLLDAAVRGEVDELKGVTENIIVGQPIPLGTGDVELTM 378 (383)
T ss_pred HHHHHHHHHhccCceEEeeechhhcCCCCCHHHhCchhhHHHHHHHHHhcCCCCCCCCcHHHhhcCCCcCCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhh
Q 000235 1421 NDEM 1424 (1815)
Q Consensus 1421 ~~~~ 1424 (1815)
|..+
T Consensus 379 ~~~~ 382 (383)
T PRK04309 379 DPPL 382 (383)
T ss_pred CCCC
Confidence 8764
|
|
| >cd02736 RNAP_III_Rpc1_C Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=713.83 Aligned_cols=300 Identities=37% Similarity=0.591 Sum_probs=255.8
Q ss_pred HhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhhcccCCCCceEEEeCCCCcchHHHH
Q 000235 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA 1140 (1815)
Q Consensus 1061 ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a 1140 (1815)
||.+++|+||||||+|||||||||+|||||||||||||+++||||||||||||||++|++|||+|+++|++. .++++|
T Consensus 1 ky~~~~v~pGe~vG~iaaQsiGEp~TQmTL~TFH~aGv~~~nvtlGvPRlkEIinasK~~~TP~~ti~l~~~--~~~~~a 78 (300)
T cd02736 1 KYMRAKVEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAKLEND--RDEKSA 78 (300)
T ss_pred CchhhccCCCccchhhhhhhcCCccccccccccccccccccccccCchHHHHHHhcccCCCCCeEEEEecCc--ccHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999984 578999
Q ss_pred HHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEEEEechhhhhcccCCHHHHH
Q 000235 1141 KNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220 (1815)
Q Consensus 1141 ~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~ 1220 (1815)
+.++.+||+++|+||+.+++++|||+...++|+.|.++++.++... +... .....+.
T Consensus 79 ~~v~~~ie~t~l~di~~~~~~~~~p~~~~~~i~~d~~~i~~~~l~~--------------------~~~~---~~~~~l~ 135 (300)
T cd02736 79 RIVKGRIEKTYLGEVASYIEEVYSPDDCYILIKLDKKIIEKLQLSK--------------------SNLY---FLLQSLK 135 (300)
T ss_pred HHHHHHHhhccHHHhhhheEEEEcCCCceEEEEecHHHHHHhcCCc--------------------ccHH---HHHHHHH
Confidence 9999999999999999999999999999999999988777654310 0000 0001111
Q ss_pred HHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccccceecccchhhhhcccccccc
Q 000235 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDAR 1300 (1815)
Q Consensus 1221 ~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~G~nl~~vl~~~~vD~~ 1300 (1815)
..+.+ +. +..-. .+-|+.+..++ . + . .+ .+.++|+||.++|.+++||++
T Consensus 136 ~~l~~-----~~-v~Gi~----gI~r~~i~~~~--~-----~------------~-~~-~l~teG~nl~~v~~~~~Vd~~ 184 (300)
T cd02736 136 RKLPD-----VV-VSGIP----EVKRAVINKDK--K-----K------------G-KY-KLLVEGYGLRAVMNTPGVIGT 184 (300)
T ss_pred HHhcc-----ce-EeCCC----CceEEEEecCC--C-----C------------C-cE-EEEEecccHHHHhcCCcEecc
Confidence 11111 11 10000 11222222110 0 0 0 11 478999999999999999999
Q ss_pred ccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCccccccchHHH
Q 000235 1301 RTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380 (1815)
Q Consensus 1301 rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSFEeT 1380 (1815)
|++||||+||+++|||||||++|++||++||+.||++||+|||+||||+||++|.+++||||||++++.|||++||||+|
T Consensus 185 rt~sNdI~ei~~~lGIEAaR~~ii~Ei~~v~~~~Gi~Vd~rHl~LiaD~MT~~G~~~~itR~gi~~~~~S~l~~aSFE~t 264 (300)
T cd02736 185 RTTSNHIMEVEKVLGIEAARSTIINEIQYTMKSHGMSIDPRHIMLLADLMTFKGEVLGITRFGIAKMKESVLMLASFEKT 264 (300)
T ss_pred CCccCCHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHhccCceeeeecccccccCCCHHHhcchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHhhcCcccccccccccccCCccccCccce
Q 000235 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416 (1815)
Q Consensus 1381 ~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~f 1416 (1815)
+++|++||++|++|+|+|||||||+|+++|+|||+|
T Consensus 265 ~~~L~~AA~~g~~D~l~gvse~ii~G~~~~~GTG~f 300 (300)
T cd02736 265 TDHLFNAALHGRKDSIEGVSECIIMGKPMPIGTGLF 300 (300)
T ss_pred HHHHHHHhhcCCCCcCCCcHHHeeeCCCcCCCCCCC
Confidence 999999999999999999999999999999999997
|
Eukaryotic RNA polymerase III (RNAP III) is a large multi-subunit complex responsible for the synthesis of tRNAs, 5SrRNA, Alu-RNA, U6 snRNA, among others. Rpc1 is also known as C160 in yeast. Structure studies suggest that different RNA polymerase complexes share a similar crab-claw-shape structure. The C-terminal domain of Rpb1, the largest subunit of RNAP II, makes up part of the foot and jaw structures of RNAP II. The similarity between this domain and the C-terminal domain of Rpb1, its counterpart in RNAP II, suggests a similar functional and structural role. |
| >cd02735 RNAP_I_Rpa1_C Largest subunit (Rpa1) of Eukaryotic RNA polymerase I (RNAP I), C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-78 Score=710.42 Aligned_cols=306 Identities=37% Similarity=0.568 Sum_probs=243.5
Q ss_pred HhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhh-cccCCCCceEEEeCCCCcchHHH
Q 000235 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV-AKKIKTPSLSVFLKPGVNSTKER 1139 (1815)
Q Consensus 1061 ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~-ak~ikTP~mtv~l~~~~~~~~~~ 1139 (1815)
||.+++|+||||||+|||||||||+|||||||||||||+++||||||||||||||. +|+||||+|+|+|+++.. .+.
T Consensus 1 ky~~slv~PGE~VG~iaAQSIGEPsTQMTLnTFH~AGv~~~nVTlGvPRL~EIi~~Ask~i~TP~m~v~l~~~~~--~~~ 78 (309)
T cd02735 1 KYMRSLVEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKNIKTPSMTLPLKNGKS--AER 78 (309)
T ss_pred CchhccCCCCcccchhhhhccCCcccccccccccccCccccccccccccHHHHHhhhccCCCCCeEEEEecCchh--HHH
Confidence 68999999999999999999999999999999999999999999999999999965 599999999999998864 468
Q ss_pred HHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcE-EEEEechhhhhcccCCHHH
Q 000235 1140 AKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWL-LRIELNREMMVDKKLSMAA 1218 (1815)
Q Consensus 1140 a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-lrl~l~~~~~~~~~l~~~~ 1218 (1815)
|++++.+||+++|+||+++++++| |. +.+...|. .....|+ +++.+... ..++-+..
T Consensus 79 a~~~~~~ie~~~l~dv~~~~~v~~--------i~---~~~~~~~~--------~~~~~~~~~~i~~~~~---~~~~~~~~ 136 (309)
T cd02735 79 AETLKKRLSRVTLSDVVEKVEVTE--------IL---KTIERVFK--------KLLGKWCEVTIKLPLS---SPKLLLLS 136 (309)
T ss_pred HHHHHhheeEeEHHHhhhhhehhH--------HH---HHHHHHhh--------hhhCCEEEEEEEecCC---chhHHHHH
Confidence 999999999999999999999877 11 11111111 0112343 23333211 01111112
Q ss_pred HHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccccceecccchhhhhcc-ccc
Q 000235 1219 VAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCH-EDV 1297 (1815)
Q Consensus 1219 i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~G~nl~~vl~~-~~v 1297 (1815)
+.+++.. ++. +..-. .+-|+.+..++ ++ . . ..+ .+.++|+||.++|.+ ++|
T Consensus 137 ~~~~~l~----~~~-i~gi~----gI~r~~i~~~~--~~----~---~--------~~~--~l~teG~nl~~v~~~~~~v 188 (309)
T cd02735 137 IVEKLAR----KAV-IREIP----GITRCFVVEED--KG----G---K--------TKY--LVITEGVNLAALWKFSDIL 188 (309)
T ss_pred HHHHHhc----ccE-EeCCC----CccEEEEecCc--CC----C---c--------eEE--EEEeccccHHHHHhccCcc
Confidence 2221111 111 11111 12223332211 00 0 0 011 367899999999998 799
Q ss_pred cccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCccccccch
Q 000235 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377 (1815)
Q Consensus 1298 D~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSF 1377 (1815)
|++|++||||+||+++|||||||++|++||+.||+.||++||+|||+||||+||++|+++++||+|| +.+.|||++|||
T Consensus 189 d~~r~~sNdi~ei~~~lGIEAar~~ii~Ei~~v~~~~Gi~V~~rHl~LiaD~MT~~G~~~~~nr~gi-~~~~S~l~~asF 267 (309)
T cd02735 189 DVNRIYTNDIHAMLNTYGIEAARRAIVKEISNVFKVYGIAVDPRHLSLIADYMTFEGGYRPFNRIGM-ESSTSPLQKMSF 267 (309)
T ss_pred ccccceeCCHHHHHHhhCHHHHHHHHHHHHHHHHHhcCCeeCHHHHHHHHHHHHhCCcEeecchhhe-ccCCCHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 678999999999
Q ss_pred HHHHHHHHHHHhhcCcccccccccccccCCccccCccceeec
Q 000235 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLY 1419 (1815)
Q Consensus 1378 EeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fdll 1419 (1815)
|+|+++|++||++|++|+|+|+|||||+||++|+|||+|||+
T Consensus 268 E~t~~~L~~Aa~~g~~D~l~g~s~~ii~G~~~~~GTG~fdll 309 (309)
T cd02735 268 ETTLAFLKKATLNGDIDNLSSPSSRLVVGKPVNGGTGLFDLL 309 (309)
T ss_pred hhHHHHHHHHhhcCCCCCCCChHHheeeCCccCccceeEEeC
Confidence 999999999999999999999999999999999999999986
|
RNA polymerase I (RNAP I) is a multi-subunit protein complex responsible for the synthesis of rRNA precursor. It consists of at least 14 different subunits, and the largest one is homologous to subunit Rpb1 of yeast RNAP II and subunit beta' of bacterial RNAP. Rpa1 is also known as Rpa190 in yeast. Structure studies suggest that different RNAP complexes share a similar crab-claw-shape structure. The C-terminal domain of Rpb1, the largest subunit of RNAP II, makes up part of the foot and jaw structures of RNAP II. The similarity between this domain and the C-terminal domain of Rpb1, its counterpart in RNAP II, suggests a similar functional and structural role. |
| >PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-77 Score=779.03 Aligned_cols=346 Identities=25% Similarity=0.456 Sum_probs=266.8
Q ss_pred ecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCccChhhHHHHHHHHHHHHHHHHHH
Q 000235 622 SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701 (1815)
Q Consensus 622 ~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~a~~~v~~~ 701 (1815)
+.+|||+.++ +||+.+|++||.+.|..|||++++|+++|++.+||||||+|++++++ +.++|++|++++.++
T Consensus 5 N~~idKk~l~----~LI~~~~~~yG~~~t~~~lD~lk~LGf~~aT~~G~SigidDl~ip~~----K~~li~~Ae~~v~~~ 76 (1331)
T PRK02597 5 NRVVDKKALK----NLIAWAFKNYGTARTAQMADNLKDLGFRYATQAGVSISVDDLKVPPA----KRDLLEQAEEEITAT 76 (1331)
T ss_pred cccccHHHHH----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhCcEEEeecccccCHH----HHHHHHHHHHHHHHH
Confidence 4578999997 99999999999999999999999999999999999999999998875 578999999999999
Q ss_pred HHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCChHHHHHhcCCCCcccchhhhhhhccccc-
Q 000235 702 IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL---SESNNLKAMVTAGSKGSFINISQMTACVGQQN- 777 (1815)
Q Consensus 702 ~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l---~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~- 777 (1815)
+++|++|.++. .|.+ .++..+|+++++.+.+.+.+.+ ++.|++++|+.||||||..|+.|++||+|+|.
T Consensus 77 ~~~y~~G~it~------~Er~-~kvi~~w~~t~e~l~~~~~~~~~~~dp~N~v~mMa~SGARGN~sQI~QLvGmRGLma~ 149 (1331)
T PRK02597 77 EERYRRGEITE------VERF-QKVIDTWNETNERLKDEVVKNFRQNDPLNSVYMMAFSGARGNMSQVRQLVGMRGLMAN 149 (1331)
T ss_pred HHHHHcCCCch------hHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHhhccCCccHHHHHHHhcchhhccC
Confidence 99999999874 3555 6788899999999888777665 67999999999999996666666666666654
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHhhceE
Q 000235 778 VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 857 (1815)
Q Consensus 778 ~eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~ 857 (1815)
..|+.| .|| |.+||++||+|+|||||||||||||||||||||+||||||||||++|||+
T Consensus 150 p~G~ii-------~lP--------------I~snFrEGLs~~EyFis~~GaRKGLvDTAlKTAdSGYLTRRLVdv~QDvi 208 (1331)
T PRK02597 150 PQGEII-------DLP--------------IKTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVI 208 (1331)
T ss_pred CCCcEE-------ecc--------------hhhhhhcCCCHHHhheeccccccchhhcceecccchhHHHHHHHhhcceE
Confidence 445544 455 89999999999999999999999999999999999999999999999999
Q ss_pred Eeec--CeeecCCCceEEEEecCCCCCceeeecccccccccchHHHhhhhhhccccCCCCcccchHHHHHHhhhhhHHHH
Q 000235 858 VKYD--GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD 935 (1815)
Q Consensus 858 v~YD--gTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1815)
|+++ ||.| |-.|.-+. ||-. .+ ..+.+..+.|....++.++. +
T Consensus 209 Vre~DCgT~~---gi~~~~~~--~~~~--~i-------~~l~~rl~GR~~~~~i~~~~-~-------------------- 253 (1331)
T PRK02597 209 VREEDCGTTR---GIVVEAMD--DGDR--VL-------IPLGDRLLGRVLAEDVVDPE-G-------------------- 253 (1331)
T ss_pred EEecCCCCCC---CEEEEEEe--cCCE--EE-------eEehheeEEEEEhhHeeCCC-C--------------------
Confidence 9986 6754 32332221 1100 00 01111111111111111100 0
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCChHHHHHHHHHHHHhhcccCCCCcc
Q 000235 936 VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015 (1815)
Q Consensus 936 ~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~ 1015 (1815)
+.+.. ...++++ ++++++.
T Consensus 254 -----------------~~i~~----------------------------~n~~i~~--------~~~~~i~-------- 272 (1331)
T PRK02597 254 -----------------EVIAE----------------------------RNTAIDP--------DLAKKIE-------- 272 (1331)
T ss_pred -----------------CEEEe----------------------------CCCCcCH--------HHHHHHH--------
Confidence 00000 0011111 1111110
Q ss_pred cHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCcccccccccccc
Q 000235 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1095 (1815)
Q Consensus 1016 ~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~ 1095 (1815)
+..+.++.+||.|+|+ ..+++|+.||+|.|+ ...+|+.|||||+|||||||||+|||||+|||.
T Consensus 273 -------~~~~~~v~iRspltC~---s~~gvC~~CYG~~la------~~~lv~lGeaVGiiAaQSIGEPGTQLTmRTFHt 336 (1331)
T PRK02597 273 -------KAGVEEVMVRSPLTCE---AARSVCRKCYGWSLA------HNHLVDLGEAVGIIAAQSIGEPGTQLTMRTFHT 336 (1331)
T ss_pred -------HcCCCEEEEECCEEec---CCCCchhhccCcchh------cCcccchhhhhhhhhhccccCCcchhehhhhhh
Confidence 1123467899999998 679999999999997 788999999999999999999999999999999
Q ss_pred ccccccccc-------cccceeeeehh
Q 000235 1096 AGVSAKNVT-------LGVPRLREIIN 1115 (1815)
Q Consensus 1096 AGv~~~NVT-------lGvPRLkEIin 1115 (1815)
+||++..++ .|++|+.|-+.
T Consensus 337 GGv~~~~~~~~i~~~~~G~i~~~~~~~ 363 (1331)
T PRK02597 337 GGVFTGEVARQVRSPFAGTVEFGKKLR 363 (1331)
T ss_pred ccccccccceeEEeccCeEEEEecCCc
Confidence 999998888 89999999553
|
|
| >TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-74 Score=744.44 Aligned_cols=334 Identities=25% Similarity=0.436 Sum_probs=252.8
Q ss_pred ecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCccChhhHHHHHHHHHHHHHHHHHH
Q 000235 622 SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701 (1815)
Q Consensus 622 ~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~a~~~v~~~ 701 (1815)
+.+|||+.++ +|||.+|++||.+.|.+|||++++|+++|++.+|||+||+|++++++ +.++|++|++++.++
T Consensus 4 N~~idKk~l~----~LI~~~~~~yG~~~t~~~lD~lk~Lgf~~aT~~G~SigidDl~ip~~----K~~li~~a~~~v~~~ 75 (1227)
T TIGR02388 4 NRVVDKKALK----NLISWAYKTYGTARTAAMADKLKDLGFRYATRAGVSISVDDLKVPPA----KQDLLEAAEKEIRAT 75 (1227)
T ss_pred ccccchHHHH----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCeEEeeccCCCCHH----HHHHHHHHHHHHHHH
Confidence 4579999996 99999999999999999999999999999999999999999999875 588999999999999
Q ss_pred HHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCChHHHHHhcCCCCcccchhhhhhhcccc-c
Q 000235 702 IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKS---LSESNNLKAMVTAGSKGSFINISQMTACVGQQ-N 777 (1815)
Q Consensus 702 ~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~---l~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ-~ 777 (1815)
+++|++|.++. .|.|+ ++.++|+++++.+.+.+.+. +++.|++++|+.||||||..|+.|++||+|+| .
T Consensus 76 ~~~y~~G~it~------~Er~~-~ii~~w~~t~e~~~~~~~~~~~~~d~~N~v~mMa~SGARGNisQi~QLvGmrGlma~ 148 (1227)
T TIGR02388 76 EERYRRGEITE------VERFQ-KVIDTWNGTNEELKDEVVNNFRQTDPLNSVYMMAFSGARGNMSQVRQLVGMRGLMAN 148 (1227)
T ss_pred HHHHHcCCCcc------hhhHH-HHHHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHhhccCcccHHHHHHHhcchheecC
Confidence 99999999876 36665 67789999999988877766 46899999999999999555555555555544 4
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHhhceE
Q 000235 778 VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 857 (1815)
Q Consensus 778 ~eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~ 857 (1815)
.+|++| .|| |.+||++||+|.|||||||||||||||||||||+||||||||||++|||+
T Consensus 149 p~G~ii-------~lP--------------I~snFreGLt~~EyF~sa~GaRkGLvDTAlKTAdSGYLTRRLVdv~qDvi 207 (1227)
T TIGR02388 149 PQGEII-------DLP--------------IKTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVI 207 (1227)
T ss_pred CCCcEe-------ecc--------------chhhhhcCCCHHHhheeccccccchhhcceeccccchHHHHHHHhhceEE
Confidence 566655 355 89999999999999999999999999999999999999999999999999
Q ss_pred Eeec--CeeecCCCceEEEEecCCCCCceeeecccccccccchHHHhhhhhhccccCCCCcccchHHHHHHhhhhhHHHH
Q 000235 858 VKYD--GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD 935 (1815)
Q Consensus 858 v~YD--gTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1815)
|.++ ||.| | +....+.... ..+.+.+..+.|....|+.++.
T Consensus 208 V~~~DCgT~~---g-----------i~v~~~~~~~-~~~~l~~rl~GRv~~~di~~~~---------------------- 250 (1227)
T TIGR02388 208 VREEDCGTER---S-----------IVVRAMTEGD-KKISLGDRLLGRLVAEDVLHPE---------------------- 250 (1227)
T ss_pred EEEcCCCCCC---C-----------EEEEEeeCCC-eEeEhhheeEeeeEHhHeECCC----------------------
Confidence 9986 6643 2 2211111000 0111111222221111111100
Q ss_pred HHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCChHHHHHHHHHHHHhhcccCCCCcc
Q 000235 936 VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015 (1815)
Q Consensus 936 ~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~ 1015 (1815)
+ ++|- ....++.+ ++++++.
T Consensus 251 -----------------------~-----------~~i~----------~~n~~I~~--------~~~~~i~-------- 270 (1227)
T TIGR02388 251 -----------------------G-----------EVIV----------PKNTAIDP--------DLAKTIE-------- 270 (1227)
T ss_pred -----------------------C-----------cEEE----------eCCCccCH--------HHHHHHH--------
Confidence 0 0000 00011111 1111110
Q ss_pred cHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCcccccccccccc
Q 000235 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1095 (1815)
Q Consensus 1016 ~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~ 1095 (1815)
....-.+.+||.|+|+ ..+++|+.||+|.|+ ...+|+.|||||+|||||||||+|||||+|||.
T Consensus 271 -------~~~~~~v~iRspltC~---s~~~vC~~CYG~~la------~~~lV~lGeaVGiiAaQSIGEPGTQLTmRTFHt 334 (1227)
T TIGR02388 271 -------TAGISEVVVRSPLTCE---AARSVCRKCYGWSLA------HAHLVDLGEAVGIIAAQSIGEPGTQLTMRTFHT 334 (1227)
T ss_pred -------HcCCCEEEEeCcceec---chhhHhHhccCCccc------cCcEechhhhhhhhhhhccCCcchhhhhhhhhh
Confidence 0123456789999998 578999999999996 689999999999999999999999999999999
Q ss_pred ccccccccc
Q 000235 1096 AGVSAKNVT 1104 (1815)
Q Consensus 1096 AGv~~~NVT 1104 (1815)
+||.+..+.
T Consensus 335 GGv~t~~~~ 343 (1227)
T TIGR02388 335 GGVFTGEVA 343 (1227)
T ss_pred cccccccee
Confidence 999876553
|
The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria. |
| >cd02737 RNAP_IV_NRPD1_C Largest subunit (NRPD1) of Higher plant RNA polymerase IV, C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-74 Score=686.29 Aligned_cols=321 Identities=25% Similarity=0.392 Sum_probs=261.6
Q ss_pred CCchhhHhhhccCCccccccccccccccccccccccccceeeeehhh--cccCCCCceEEEeCC-------CCcchHHHH
Q 000235 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV--AKKIKTPSLSVFLKP-------GVNSTKERA 1140 (1815)
Q Consensus 1070 GEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~--ak~ikTP~mtv~l~~-------~~~~~~~~a 1140 (1815)
|||||+|||||||||||||||||||+||++ +|||||||||+ ++++|||+|+|+|.. ++.. ++.|
T Consensus 1 GE~VG~LAAqSIgEPAtQmtLntfh~agvs------~vprLKEiLn~~~~~~~ktps~~v~L~~~~~~~~~~~~~-~~~a 73 (381)
T cd02737 1 GEPVGSLAATAISEPAYKALLDPPQSLESS------PLELLKEVLECRSKSKSKENDRRVILSLHLCKCDHGFEY-ERAA 73 (381)
T ss_pred CCcchhHHHhhhcchHHHhhhccchhcCCc------cHHHHHHHhcccccCCCCCCCEEEEEeccccccccchHH-HHHH
Confidence 999999999999999999999999999996 49999999999 688999999999975 3333 6789
Q ss_pred HHHHhhhccccccccceeeEEEEcCCCCceEEEcccceehe-----eccCCCCcccccccCCcEEEEEechhhhhcccCC
Q 000235 1141 KNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS-----YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1215 (1815)
Q Consensus 1141 ~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~-----~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~ 1215 (1815)
++|++.||+++|++|+..++|+|||++..+++++|.++++. ++++++++.+...+++|++|++||++..
T Consensus 74 ~~Vq~~Le~~tL~~v~~~~~I~Ydp~~~~t~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~spw~~r~~l~~~~~------ 147 (381)
T cd02737 74 LEVKNHLERVTLEDLATTSMIKYSPQATEAIVGEIGDQLNTKKKGKKKAIFSTSLKITKFSPWVCHFHLDKECQ------ 147 (381)
T ss_pred HHHHHHhhhccHHHhhheEEEEECCCcccccccccHHHHHhhhhhhhhcccccccccccCCcceEEEEEehhHh------
Confidence 99999999999999999999999999999999999999887 8888887777788899999999987521
Q ss_pred HHHHHHHHhhhcCCCceeeecCCCcc----------------------------ceEEEEEEccCCCCCCCCCCCcchhH
Q 000235 1216 MAAVAEKINQEFDDDLTCIFNDDNAD----------------------------KLILRIRIMNDEAPKGELNDESAEDD 1267 (1815)
Q Consensus 1216 ~~~i~~~i~~~~~~~~~~~~~~dn~~----------------------------~~~~~ir~~~~~~~~~~~~~~~~~~~ 1267 (1815)
++.+..|+..++|.+ ..+-++.+...++...... + .
T Consensus 148 -----------~~~~~~ci~~~~~~~~~~~~~~~~~~~~~~i~~~lL~~~lkG~~~I~kv~i~~~~~~~~~~~-~----~ 211 (381)
T cd02737 148 -----------KLSDGPCLTFSVSKEVSKSSEELLDVLRDRIIPFLLETVIKGDERIKSVNILWEDSPSTSWV-K----S 211 (381)
T ss_pred -----------cCCCCceEEeecCcccccchhHHHHHHHHHHHHHHhheeecccCCeeEEEEEecCCCccccc-c----c
Confidence 222333333222200 0011111111000000000 0 0
Q ss_pred HHHHHHHhhccccce-------ecccchhhhh-----ccccccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCc
Q 000235 1268 VFLKKIESNMLTEMA-------LRGVNLLAVM-----CHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335 (1815)
Q Consensus 1268 ~~l~~~~~~~l~~~~-------~~G~nl~~vl-----~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~G 1335 (1815)
.-.+. +.++.-++. .+|++|+.|| .+++||++|++||||+||+++|||||||++|++||+.||++||
T Consensus 212 ~~~~~-~~E~vLe~~~~~~~~~t~G~~~~~vl~~c~~~~~~ID~~rt~sNdI~ev~~~lGIEAAR~~ii~El~~v~~~~G 290 (381)
T cd02737 212 VGKSS-RGELVLEVTVEESCKKTRGNAWNVVMDACIPVMDLIDWERSMPYSIQQIKSVLGIDAAFEQFVQRLESAVSMTG 290 (381)
T ss_pred ccccc-cceEEEEEEeccccccccchhHHHHHHhhhcccccCcCCCcEECCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 00000 111111122 2389999999 4899999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHhhhhccceecccccccccccCC-----ccccccchHHHHHHHHHHHhhcCcccccccccccccCCccc
Q 000235 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT-----GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP 1410 (1815)
Q Consensus 1336 i~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~-----spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p 1410 (1815)
++||+|||+||||+||++|++++||||||++.+. |||+|||||+|+++|++||.+|+.|+|+|||+||||||+++
T Consensus 291 ~~Vd~rHL~LlAD~MT~~G~~~~~nR~Gi~~~~~s~~~~spl~~asFE~t~~~l~~AA~~g~~D~l~gvs~~ii~G~~~~ 370 (381)
T cd02737 291 KSVLREHLLLVADSMTYSGEFVGLNAKGYKAQRRSLKISAPFTEACFSSPIKCFLKAAKKGASDSLSGVLDACAWGKEAP 370 (381)
T ss_pred CcccHHHHHHHHHHhccCCceEEecchhhhhcccccccCCHHHHhhHHHHHHHHHHHHhccCCCCCCChHHheeeCCcCC
Confidence 9999999999999999999999999999998765 89999999999999999999999999999999999999999
Q ss_pred cCccc-eeecc
Q 000235 1411 IGTGD-CSLYL 1420 (1815)
Q Consensus 1411 ~GTG~-fdll~ 1420 (1815)
+|||+ |||++
T Consensus 371 vGTG~~fdll~ 381 (381)
T cd02737 371 VGTGSKFEILW 381 (381)
T ss_pred CcCCcceeeeC
Confidence 99998 99975
|
Higher plants have five multi-subunit nuclear RNA polymerases: RNAP I, RNAP II and RNAP III, which are essential for viability; plus the two isoforms of the non-essential polymerase RNAP IV (IVa and IVb), which specialize in small RNA-mediated gene silencing pathways. RNAP IVa and/or RNAP IVb might be involved in RNA-directed DNA methylation of endogenous repetitive elements, silencing of transgenes, regulation of flowering-time genes, inducible regulation of adjacent gene pairs, and spreading of mobile silencing signals. NRPD1a is the largest subunit of RNAP IVa, whereas NRPD1b is the largest subunit of RNAP IVb. The full subunit compositions of RNAP IVa and RNAP IVb are not known, nor are their templates or enzymatic products. However, it has been shown that RNAP IVa and, to a lesser extent, RNAP IVb are crucial for several RNA-mediated gene silencing phenomena. |
| >CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-70 Score=720.90 Aligned_cols=340 Identities=25% Similarity=0.371 Sum_probs=254.4
Q ss_pred eecccccccccCCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeeeccCccChhhHHHHHHHHHHHHHHHHH
Q 000235 621 LSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700 (1815)
Q Consensus 621 l~g~ldK~~~g~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~a~~~v~~ 700 (1815)
++.+|||+.++ +||+.+|++||.+.|.+|||++++|+++|++.+|||+||+|++++++ +.++|++|++++.+
T Consensus 10 ~N~~~~k~~l~----~li~~~~~~~G~~~t~~~lD~lk~lgf~~at~~G~Sigi~Dl~ip~~----K~~li~~a~~~v~~ 81 (1364)
T CHL00117 10 HNKVIDKTALK----RLISWLIDHFGMAYTSHILDQLKTLGFQQATAAGISLGIDDLLTPPS----KGWLVQDAEQQSLI 81 (1364)
T ss_pred EeccccHHHHH----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcceEEecCcccCCHH----HHHHHHHHHHHHHH
Confidence 45679999997 89999999999999999999999999999999999999999999875 57899999999999
Q ss_pred HHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHhhcCCCChHHHHHhcCCCCcccchhhhhhhccccc
Q 000235 701 LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSS---AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777 (1815)
Q Consensus 701 ~~~~~~~~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~---~~~~l~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~ 777 (1815)
+.++|++|.++. .|+++..+. +|+.+.+.+.+. +.+.+++.|++++|+.||||| |++||.+|+|++.
T Consensus 82 ~~~~y~~G~it~------~er~~~~i~-~w~~~~~~l~~~~~~~~~~~d~~N~v~mMa~SGARG---n~sQi~qLvGmRG 151 (1364)
T CHL00117 82 LEKHYHYGNVHA------VEKLRQSIE-IWYATSEYLKQEMNPNFRMTDPLNPVYMMSFSGARG---NASQVHQLVGMRG 151 (1364)
T ss_pred HHHHHHcCCCCH------HHHHHHHHH-HHHHHHHHHHHHHHHhhccCCCCCcHhhhhhccCcc---cHHHHHHHhcccc
Confidence 999999999974 377765544 565555544433 334567899999999999999 5666666666655
Q ss_pred c----CCCccCCCCCCCCCCCCCCCCCCCccccccccCCcCCCChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHh
Q 000235 778 V----EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853 (1815)
Q Consensus 778 ~----eG~Rip~~~~~rtLp~f~~~d~~~~~~Gfv~~sf~~GL~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~l 853 (1815)
+ .|++| .|| |.+||++||+|.|||||||||||||||||||||+||||||||||++
T Consensus 152 lma~p~G~iI-------~~P--------------I~snFreGLs~~EyFis~~GaRkGLvDTAlkTAdSGYLtRRLVdv~ 210 (1364)
T CHL00117 152 LMSDPQGQII-------DLP--------------IQSNFREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVV 210 (1364)
T ss_pred eeeCCCCcEe-------ecc--------------hhhhhhcCCCHHHhheeccccccchhhcceecccccchhhHHHhhh
Confidence 4 55555 233 8999999999999999999999999999999999999999999999
Q ss_pred hceEEee-c-CeeecCCCceEEEEecCCCCCceeeecccccccccchHHHhhhhhhccccCCCCcccchHHHHHHhhhhh
Q 000235 854 EDIMVKY-D-GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIK 931 (1815)
Q Consensus 854 Edl~v~Y-D-gTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1815)
|||+|.- | ||.| |-.|.-+-|++ . ...+.+..+.|....|+.+ .+
T Consensus 211 qdviV~~~dCgt~~---gi~~~~~~~~~---~---------~~~l~~rl~GRv~~~di~~--~~---------------- 257 (1364)
T CHL00117 211 QHIVVRETDCGTTR---GISVSPRNGMM---I---------ERILIQTLIGRVLADDIYI--GS---------------- 257 (1364)
T ss_pred ccEEEEeccCCCCC---CEEEEEecCCe---E---------EeEecceeEEEEEhhhEEe--CC----------------
Confidence 9999975 4 6654 32222221111 0 0011111112211111100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHHHhhhhcccCCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 000235 932 ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011 (1815)
Q Consensus 932 ~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 1011 (1815)
+.+... ..+++. ++ ++++.
T Consensus 258 ---------------------~~i~~~----------------------------n~~I~~-~~-------~~~i~---- 276 (1364)
T CHL00117 258 ---------------------RCIATR----------------------------NQDIGI-GL-------ANRFI---- 276 (1364)
T ss_pred ---------------------EEEEeC----------------------------CCCcCH-HH-------HHHHH----
Confidence 000000 011111 11 11110
Q ss_pred CCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCcccccccc
Q 000235 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1091 (1815)
Q Consensus 1012 ~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLn 1091 (1815)
+...-.+.+||+|+|+ ..+++|+.||+|.|+ ...+|+.|||||+|||||||||+|||||+
T Consensus 277 -----------~~~~~~v~iRSpltC~---~~~~vC~~CYG~~la------~~~lV~~GeaVGiiAaQSIGEPGTQLTmR 336 (1364)
T CHL00117 277 -----------TFRAQPISIRSPLTCR---STSWICQLCYGWSLA------HGDLVELGEAVGIIAGQSIGEPGTQLTLR 336 (1364)
T ss_pred -----------HcCCCEEEEeCCcccc---cHHHHHHHHhCcccc------cCcccChhhhhhhhhhhccCCCchhhhhh
Confidence 1123456789999998 678999999999997 68999999999999999999999999999
Q ss_pred cccccccccccccc-------ccceeeee
Q 000235 1092 TFHYAGVSAKNVTL-------GVPRLREI 1113 (1815)
Q Consensus 1092 TFH~AGv~~~NVTl-------GvPRLkEI 1113 (1815)
|||.+||++..++. |+.++.|-
T Consensus 337 TFH~GGv~t~~~~~~i~a~~~G~i~~~~~ 365 (1364)
T CHL00117 337 TFHTGGVFTGGTAEQVRAPFNGKIKFNED 365 (1364)
T ss_pred hhhhcccccccceeeEEeccCeEEEEecc
Confidence 99999998876654 99999883
|
|
| >PF04998 RNA_pol_Rpb1_5: RNA polymerase Rpb1, domain 5; InterPro: IPR007081 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=654.24 Aligned_cols=275 Identities=49% Similarity=0.782 Sum_probs=220.4
Q ss_pred CCChhhhhhhccCCCcchhhhccccCCCchhHHHHHHHhhceEEeecCeeecCCCceEEEEecCCCCCceeeeccccccc
Q 000235 815 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894 (1815)
Q Consensus 815 GL~p~EfFfH~m~gReGLiDTAvKTa~sGYlqRrLvk~lEdl~v~YDgTVRns~g~iiQF~YGeDg~d~~~~e~~~~~~~ 894 (1815)
||+|+|||||||||||||||||||||+||||||||||+||||+|+||+||||+.+.|+||+||+||
T Consensus 1 Gl~~~e~f~~~~~~R~gl~dta~kTa~sGyl~R~lv~~~~~~~v~~~~~~~~~~~~i~~~~~~~~~-------------- 66 (277)
T PF04998_consen 1 GLTPTEYFFHCMGGREGLIDTAVKTADSGYLQRRLVKVLEDLIVRYDDCVRNSGGSIIQFIYGEDG-------------- 66 (277)
T ss_dssp C-THHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHEEETTSEEESTTSEEEESSCTTTS--------------
T ss_pred CcCHHHHHHHHhcccccccccceeeeccccchhhhhhccceEEEEEcCccccccceeeeccccccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccchHHHhhhhhhccccCCCCcccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccCCCCCCCccccHHHHHH
Q 000235 895 KMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW 974 (1815)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~p~n~~r~i~ 974 (1815)
T Consensus 67 -------------------------------------------------------------------------------- 66 (277)
T PF04998_consen 67 -------------------------------------------------------------------------------- 66 (277)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhcccCCCCCCCCChHHHHHHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhHHHHHhhccCHHHHHHH
Q 000235 975 NAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054 (1815)
Q Consensus 975 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~~~~~~~~l~~~~~~~~ 1054 (1815)
T Consensus 67 -------------------------------------------------------------------------------- 66 (277)
T PF04998_consen 67 -------------------------------------------------------------------------------- 66 (277)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCcccCCCchhhHhhhccCCccccccccccccccccccccccccceeeeehhhcccCCCCceEEEeCCCCc
Q 000235 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVN 1134 (1815)
Q Consensus 1055 l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~ 1134 (1815)
+|+||||||+|||||||||+|||||||||+||++++|||+|+|||+||++++++.++|+++++......
T Consensus 67 -----------~v~~Ge~VGiiaAQSIGEP~TQ~TL~TFH~aG~~~~~vt~giprl~eii~~~~~~~~~~~~~~~~~~~~ 135 (277)
T PF04998_consen 67 -----------LVEPGEAVGIIAAQSIGEPGTQMTLRTFHTAGVASKNVTQGIPRLKEIINASKKIKTPIITVYGKKKII 135 (277)
T ss_dssp -----------B--TTSBHHHHHHHHHHCHGCCSHHSCTSSSCSSTSSCSSSHHHHHHHHTTCSSSSSEEEEECSCSSEC
T ss_pred -----------ccCccccchhhhhchhcchhHHhhhcccccCceeeecccccceeeccccccccccccceEEeeccccee
Confidence 367999999999999999999999999999999999999999999999999999999999998877654
Q ss_pred chHHHHHHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEEEEechhhhhcccC
Q 000235 1135 STKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKL 1214 (1815)
Q Consensus 1135 ~~~~~a~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l 1214 (1815)
...+.+..+....+... +..++... .......+
T Consensus 136 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~------------------------~~~~~~~~ 168 (277)
T PF04998_consen 136 SEKKKIKIIRKKIKIIK-----------------------NGKKVKNG------------------------DKIKKGSI 168 (277)
T ss_dssp SSSHHHHHHHHTCSSSC-----------------------STTCEHTT------------------------CESSSSCS
T ss_pred cccccceEEEEeeeeee-----------------------cccceecc------------------------eeeeccee
Confidence 44444444443333300 00000000 00000000
Q ss_pred CHHHHHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccccceecccchhhhhcc
Q 000235 1215 SMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCH 1294 (1815)
Q Consensus 1215 ~~~~i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~G~nl~~vl~~ 1294 (1815)
....+ .. . ......+.+.|.||..+|..
T Consensus 169 ~~~~~--------------------------------------------------~~-~-~~~~~~l~~~g~~l~~v~~~ 196 (277)
T PF04998_consen 169 ISKDI--------------------------------------------------LE-K-KSKEYVLQTEGSNLQEVYSS 196 (277)
T ss_dssp EHHHH--------------------------------------------------CE-E-CCCCCEEECCSHHHHHHTCS
T ss_pred eeecc--------------------------------------------------cc-c-hhHHHHHHHHhhhchhheec
Confidence 00000 00 0 00001356689999999999
Q ss_pred cc-ccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCcccc
Q 000235 1295 ED-VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1373 (1815)
Q Consensus 1295 ~~-vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~ 1373 (1815)
++ +|++++++|||++|+++|||||||++|++|++.||..||++||+|||+|+||+||++|.+++||||||+..++|.|+
T Consensus 197 qgvid~~k~~sn~I~qm~~~~GIeaar~~i~~e~~~v~~~~g~~vn~rhl~llad~mt~~g~~~gitR~gl~~~~~S~~~ 276 (277)
T PF04998_consen 197 QGVIDNDKHISNDIRQMLSKLGIEAARNSIIKELKNVFESYGIEVNKRHLSLLADYMTYKGVLLGITRHGLNSNKSSFLS 276 (277)
T ss_dssp TT-EETCHHECSHHHHHHHHHEHHHHHHHHHHHHHCHHHHCTSCCCHHHHHHHHHHHCCCSS---CCTTTTSSSSSSHHH
T ss_pred ccccCCCEEEeceeEeeeeeEEEEECCCceeecCcEeeHHHHHHHHHHHHHhCCCcCeeeeEEEEEEHHHhccCCCCccC
Confidence 98 99999999999999999999999999999999999999999999999999999999999999999999987666654
|
Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to form the central cleft or channel where the DNA is bound [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1ZYR_D 1SMY_D 2A68_N 2O5J_D 3AOH_N 2O5I_D 2CW0_N 2A6H_N 2A69_D 3EQL_D .... |
| >PF04997 RNA_pol_Rpb1_1: RNA polymerase Rpb1, domain 1; InterPro: IPR007080 RNA polymerases catalyse the DNA-dependent polymerisation of RNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=606.45 Aligned_cols=319 Identities=47% Similarity=0.803 Sum_probs=259.6
Q ss_pred cccceEEEEcCCHHHHHhcceeEEeeCccccCC--CCCCCCCCCCCCCCcCCCccccccccCCCCcCCccceeecccccc
Q 000235 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMF 90 (1815)
Q Consensus 13 ~~i~~i~F~~~S~eeI~~~Sv~eI~~~~~~~~~--~p~~gGl~D~rlG~~~~~~~C~TCg~~~~~CpGHfGhIeL~~PV~ 90 (1815)
++|++|+||++|+|||++|||+||+++++||.. +|+.|||||||||+.++...|+|||++..+||||||||||+.|||
T Consensus 2 ~~i~~i~f~~~s~~eI~~~Sv~~i~~~~~~~~~~~~p~~~Gl~d~rlG~~~~~~~C~tC~~~~~~CpGHfGhI~L~~PV~ 81 (337)
T PF04997_consen 2 KKIKSIQFGIYSPEEIRKLSVKEITNPETFDNLTGKPIKGGLYDPRLGPIDKKQICSTCGLNYTECPGHFGHIELALPVY 81 (337)
T ss_dssp EEEEEEEEEE--HHHHHHHEEEB--SSTSBCTSSSSCBSSSSSSSSSS-SSSSSTSSSSSSSSSSCCCSEEEEEEEEEEE
T ss_pred CeeeEEEEEeCCHHHHHHhCcEEEechhhccCCCCCCccccccChhhcCCCcccccccccccccccCCceeEEEeCHHHH
Confidence 689999999999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHhcccceecceeccCCchHHH-HHH-HH--hcChHHHHHHHHHHhhhccccCCCCCCCCCCCCCCccccc
Q 000235 91 HIGFMKTVLSIMRSVCFNCSKILADEDDHKF-KQA-LK--IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK 166 (1815)
Q Consensus 91 h~~f~~~v~~iL~~vC~~C~~l~~~~~~~~~-~~~-~~--~~~~~~~~~~i~~~~~~~~~C~~~~~~~~~~~~~~~~~~~ 166 (1815)
|||||+.|.+||+|+|++|++++++..+..+ ... .. ......+++.+.+.|++...|......+.. ........
T Consensus 82 h~~f~~~i~~iL~~~C~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 159 (337)
T PF04997_consen 82 HPGFFKEIPKILRCICKKCSRLLLSEKEKYFYLKILLKLKKKKKKERLKIISKECKKKSICSHCKAINGK--IKKVEKSK 159 (337)
T ss_dssp TCCCHHHHHHHHTTSCTTTSCTSTCCCCHTSCHHHCHCSHSSSHHHHHHHHHHHHHHTCSSTSTCC-SSS-----SSSEE
T ss_pred hhcccccceeeecccccccccccccccccccccccccccccccchhHHHHHHHhhhhhhhhccccccccc--ccccccch
Confidence 9999999999999999999999999876521 111 11 234567888999999988888753111000 00000024
Q ss_pred ccCCCCccchhhhhcc-cchhhhhHHhhccccccCCCCccchhcccCCHHHHHHHHhhcChhhHHHhcCCCCCCCccceE
Q 000235 167 NKGGCGAQQPKLTIEG-MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245 (1815)
Q Consensus 167 ~~~gCg~~~p~i~k~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~v~~ilk~i~~~d~~~l~~~~~~~~Pe~~i 245 (1815)
.+.+|+..++.+++.+ ..+...++.. +..+... ...+.|+|.+|+++|++|+++|+.+|||.+...+|+|||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~~------~~~~~l~~~~v~~ilk~l~~~~~~~l~~~~~~~~P~~~~ 232 (337)
T PF04997_consen 160 KCEGCGKKNPKIRKEGAEKIQEEIKKK-ESNKEIK------EELRILTPEEVRQILKKLSKEDKELLGFDPSGSRPEWFF 232 (337)
T ss_dssp TSSSSSSBSCEEEEESHCCCCCHHHSC-CHHHHHH------CHCECESHHHHHHHHHHSHHHHHHHHHHHTTTBSGGGSE
T ss_pred hcccccccCcccccchhhhcccccccc-cccccch------hhhhhhhhhhhhhcchhhhhhheeeeeccccccccceeE
Confidence 5778999888888777 4444444322 0000000 123479999999999999999999999988889999999
Q ss_pred EeecccCCCCCCCC----------chhHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHhhccCCCCCCCccc
Q 000235 246 LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315 (1815)
Q Consensus 246 l~~lpVpP~~~RP~----------ddlT~~l~~Ii~~N~~lk~~~~~g~~~~~i~~~~~~LQ~~V~~~~dn~~~~~p~~~ 315 (1815)
|++|||||+++||+ ||||++|++||++|++|++..+.+++...+.+.|++||++|++||||++++.|.+.
T Consensus 233 l~~lpVpP~~~RP~v~~~~~~~~eddlt~~~~~Ii~~N~~L~~~~~~~~~~~~~~~~~~~LQ~~v~~~~dn~~~~~~~~~ 312 (337)
T PF04997_consen 233 LTVLPVPPPRFRPSVQLGGGRFSEDDLTSLYRKIIKRNNRLRKLLEEGAPSSIIMEEWRLLQEAVNSLIDNEKPGKPPAG 312 (337)
T ss_dssp EEEEEE-TGGGS-EEEESSSEEEE-HHHHHHHHHHHHHHHHHHCCTSTSSSCHHHHHHHHHHHHHHHHHCTTSSSSSBCB
T ss_pred EeeeecCCceeeeeeeeecccccCchHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhhHhHhHHhhhcccCCcccc
Confidence 99999999999998 89999999999999999999989999999999999999999999999999998887
Q ss_pred ccCCCChhhhhhhhhhccccccccc
Q 000235 316 QRSGRPIKSICSRLKAKEGRIRGNL 340 (1815)
Q Consensus 316 ~~~~~p~k~i~qrLkgK~Gr~R~nl 340 (1815)
++++||+|||+|||||||||||+||
T Consensus 313 ~~~~~~~k~i~q~L~gK~GrfR~NL 337 (337)
T PF04997_consen 313 QKSGRPLKGISQRLKGKEGRFRQNL 337 (337)
T ss_dssp STTSSB--THHHHHSSTTSSHCHHT
T ss_pred cccCCCCCCHHHHccCCCCcCCCCC
Confidence 7889999999999999999999997
|
Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which is a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2Y0S_W 3QQC_A 1YNJ_D 1HQM_D 1YNN_D 1I6V_D 2GHO_D 2AUJ_D 1ZYR_D 1SMY_D .... |
| >PRK14898 DNA-directed RNA polymerase subunit A''; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=630.74 Aligned_cols=293 Identities=35% Similarity=0.531 Sum_probs=252.7
Q ss_pred hhhccCCccccccccccccccccccccccccceeeeehhhcccCCCCceEEEeCCCCcchHHHHHHHHhhhccccccccc
Q 000235 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVT 1156 (1815)
Q Consensus 1077 AAQSIGEPaTQMTLnTFH~AGv~~~NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a~~v~~~le~~tL~dv~ 1156 (1815)
+|.-| .|||||||||||||++|||||||||||||||++|+||||+|+|+|.+++..+++.|+.++.+||+++|+||+
T Consensus 535 ~Angi---v~~~~LnTFH~AGv~~~nVTlGvPRL~EIinask~i~TP~m~i~l~~~~~~~~~~a~~v~~~ie~~~L~dv~ 611 (858)
T PRK14898 535 TADGV---VTHNTMRTFHYAGVAEINVTLGLPRMIEIVDARKEPSTPIMTVHLKGEYATDREKAEEVAKKIESLTLGDVA 611 (858)
T ss_pred eeCCE---eeccccceeeccCccccccccCCchHHHHhcccCCCCCceEEEEECCCccchHHHHHHHHhheeeEEHHHHH
Confidence 44444 799999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred eeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEEEEechhhhhcccCCHHHHHHHHhhhcCCCceeeec
Q 000235 1157 EATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236 (1815)
Q Consensus 1157 ~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~~~~ 1236 (1815)
+++++.+. .-.++++|+++.+.++++++++|..+|...++..+.+
T Consensus 612 ~~~~~~~~--------------------------------~~~~~i~l~~~~~~~~~l~~~~i~~~i~~~~~~~~~~--- 656 (858)
T PRK14898 612 TSIAIDLW--------------------------------TQSIKVELDEETLADRGLTIESVEEAIEKKLGVKIDR--- 656 (858)
T ss_pred HHhhhhcc--------------------------------ccEEEEEECHHHHHHcCCCHHHHHHHHHHhccccccC---
Confidence 87663110 0137788999999999999999999998776543322
Q ss_pred CCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHh-------------------------hccccceecccchhhh
Q 000235 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIES-------------------------NMLTEMALRGVNLLAV 1291 (1815)
Q Consensus 1237 ~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~l~~~~~~G~nl~~v 1291 (1815)
++.+++++..... .+.+++.++. .-+ .+.++|+||+++
T Consensus 657 ----~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~i~gi~gI~~~~i~~~~~~~~~~~-~l~teG~nl~~~ 719 (858)
T PRK14898 657 ----KGTVLYLKPKTPS------------YKALRKRIPKIKNIVLKGIPGIERVLVKKEEHENDEEY-VLYTQGSNLREV 719 (858)
T ss_pred ----CCCEEEEEecCch------------HHHHHHHHHHhcCcEEECCCCccEEEEecCCCCCCceE-EEEecCcCHHHH
Confidence 2345555543211 0111111110 011 377899999999
Q ss_pred hccccccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCcc
Q 000235 1292 MCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371 (1815)
Q Consensus 1292 l~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~sp 1371 (1815)
|.+++||++||+||||++|+++|||||||++|++||+.||+.||++||+|||+||||+||++|.+++|||+||++.++||
T Consensus 720 ~~~~~vd~~~~~sN~i~~i~~~lGIEAar~~ii~Ei~~v~~~~gi~V~~rHl~liad~MT~~G~~~~~~r~gi~~~~~s~ 799 (858)
T PRK14898 720 FKIEGVDTSRTTTNNIIEIQEVLGIEAARNAIINEMMNTLEQQGLEVDIRHLMLVADIMTADGEVKPIGRHGVAGEKGSV 799 (858)
T ss_pred hcCCCCcccccccCCHHHHHHhhCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHccCCcEEEeccCCccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred ccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccceeeccchhh
Q 000235 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424 (1815)
Q Consensus 1372 L~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fdll~~~~~ 1424 (1815)
|++||||+|+++|++||++|++|.|+|||||||+|+++|+|||+|||++|.+.
T Consensus 800 l~~asFe~t~~~l~~Aa~~g~~D~l~g~s~~ii~G~~~~~GTG~~~l~~~~~~ 852 (858)
T PRK14898 800 LARAAFEETVKHLYDAAEHGEVDKLKGVIENVIVGKPIKLGTGCVDLRIDREY 852 (858)
T ss_pred HHhcChHhHHHHHHHHhhcCCCCcCCCchHHeeeCCccCCcCceEEEEecCcc
Confidence 99999999999999999999999999999999999999999999999998764
|
|
| >PF00623 RNA_pol_Rpb1_2: RNA polymerase Rpb1, domain 2; InterPro: IPR000722 RNA polymerases catalyse the DNA dependent polymerisation of RNA from DNA, using the four ribonucleoside triphosphates as substrates | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-62 Score=524.51 Aligned_cols=166 Identities=59% Similarity=1.002 Sum_probs=153.2
Q ss_pred CCCCCCCCceeecCCCCcccccccChHHHhhhccCCcccchhHHHHHHHHHHcCCCCCCCcccccEEEeCCCceeecccc
Q 000235 342 GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421 (1815)
Q Consensus 342 GKRVdfsaRsVIspDP~L~~~evGvP~~~A~~LT~PE~Vt~~Ni~~l~~lv~ng~~~~pg~~~A~~i~~~~g~~~~l~~~ 421 (1815)
||||||||||||+|||+|+++|||||..||++||+||.||+||+++|+++|.||++.||| |+|+++.+|.+++|++.
T Consensus 1 GKRVnfSaRSVItpDP~L~~~EvGiP~~iA~~Lt~Pe~Vt~~N~~~l~~~v~ng~~~~pg---a~~i~~~~~~~~~l~~~ 77 (166)
T PF00623_consen 1 GKRVNFSARSVITPDPNLKIDEVGIPIEIAKKLTFPERVTPFNIEKLRKLVINGPDKYPG---ANYIKRSNGNKISLRYK 77 (166)
T ss_dssp CEEESSEEEEEEEEETTSCTTEEEEEHHHHHHCECCHHHHTTTHHHHHHHHHHTTTSSSS---EEEEESTTCHCCCTTSS
T ss_pred CCCcccCCCcEEECCCCCccceecccHHHHhhCCCcEEEHHHHHHHHHHHHhcCcccchh---hhhhhcccCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999999999887
Q ss_pred ccccccccccccEeeeecccCCeEEEecCCccccccccceeEEeecCCeeeecccCCCCCCCCCCcCccccccCCCHhHH
Q 000235 422 KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501 (1815)
Q Consensus 422 ~~~~~~~L~~g~~V~Rhl~dgD~VL~NRQPsLHk~Simah~vkv~~~~t~rln~~vc~pyNADFDGDEMn~h~Pqs~~ar 501 (1815)
+.+....|+.|++|+||++|||+|||||||||||+|||||++++++++||||||++|+||||||||||||+|+|||++||
T Consensus 78 ~~~~~~~l~~~~~v~r~l~~gd~vl~nRqPtLh~~s~~a~~~~~~~~~t~~~~~~~c~~~NADFDGDem~i~~p~~~~a~ 157 (166)
T PF00623_consen 78 KFKISKKLRIGDIVERHLCDGDIVLLNRQPTLHRMSIMAHKVRVLPGKTIRINPLVCSPFNADFDGDEMNIHLPQSYEAR 157 (166)
T ss_dssp SSCCCHHHHTT-EEEEEHTTT-EEEEEESS-SSGGGEEEEEEEEESSSSEEEEGGGHHHHT--TSS-EEEEE--SSHHHH
T ss_pred cccccceecchhhHHHhhhcCceeEEeccchhccceeeeeeeeeecccEEEeeccchhhhhccCCcceEEEEecCCHHHH
Confidence 65555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccC
Q 000235 502 AEVLELMMV 510 (1815)
Q Consensus 502 aE~~~l~~~ 510 (1815)
||+++||+|
T Consensus 158 ~E~~~L~~~ 166 (166)
T PF00623_consen 158 AEAKELMNV 166 (166)
T ss_dssp HHHHHHCBT
T ss_pred HHHHHHhcC
Confidence 999999986
|
Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Eukaryotic RNA polymerase I is essentially used to transcribe ribosomal RNA units, polymerase II is used for mRNA precursors, and III is used to transcribe 5S and tRNA genes. Each class of RNA polymerase is assembled from nine to fourteen different polypeptides. Members of the family include the largest subunit from eukaryotes; the gamma subunit from Cyanobacteria; the beta' subunit from bacteria; the A' subunit from archaea; and the B'' subunit from chloroplast RNA polymerases.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_M 2PMZ_Q 3HKZ_I 1ZYR_D 1SMY_D 2A68_N 2O5J_D 3AOH_N 2O5I_D 2CW0_N .... |
| >cd00630 RNAP_largest_subunit_C Largest subunit of RNA polymerase (RNAP), C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=400.39 Aligned_cols=110 Identities=46% Similarity=0.779 Sum_probs=107.4
Q ss_pred cHHHHHHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceecccccccccccCCccccccchHHHHHHHH
Q 000235 1306 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385 (1815)
Q Consensus 1306 dI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~spL~~aSFEeT~~~L~ 1385 (1815)
||++|+++|||||||++|++||++||+.||++||+|||+||||+||++|.++++||+||++.++|||++||||+|+++|+
T Consensus 49 dI~~i~~~lGIEAaR~~iv~El~~v~~~~Gi~V~~rHl~LIAD~MT~~G~~~ginr~g~~~~~~Spl~~aSFE~t~~~L~ 128 (158)
T cd00630 49 SIHEMLEALGIEAARETIIREIQKVLASQGVSVDRRHIELIADVMTYSGGLRGVTRSGFRASKTSPLMRASFEKTTKHLL 128 (158)
T ss_pred cHHHHHHHhCHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHhcCCcccccccccccccCCCHHHHcCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHhhcCcccccccccccccCCccccCccc
Q 000235 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415 (1815)
Q Consensus 1386 ~AA~~ge~D~l~gvsenIi~G~~~p~GTG~ 1415 (1815)
+||.+|++|+|+|++||||||+++|+|||+
T Consensus 129 ~AA~~g~~D~l~g~s~~ii~Gk~~~~GTG~ 158 (158)
T cd00630 129 DAAAAGEKDELEGVSENIILGRPAPLGTGS 158 (158)
T ss_pred HHhhcCCCCCCCCcHHhhhccCCCCCCCCC
Confidence 999999999999999999999999999995
|
RNA polymerase (RNAP) is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is the final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei, RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. Structure studies revealed that prokaryotic and eukaryotic RNAPs share a conserved crab-claw-shape structure. The largest and the second largest subunits each make up one clamp, one jaw, and part of the cleft. The largest RNAP subunit (Rpb1) interacts with the second-largest RNAP subunit (Rpb2) to form the DNA entry and RNA exit channe |
| >cd02655 RNAP_beta'_C Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=408.00 Aligned_cols=108 Identities=33% Similarity=0.586 Sum_probs=98.1
Q ss_pred cHHHHHHhh--cHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceec--------------------------
Q 000235 1306 HLIEIIEVL--GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM-------------------------- 1357 (1815)
Q Consensus 1306 dI~eI~~vl--GIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~-------------------------- 1357 (1815)
|++++++++ ||||||++|++||++||..||++||+|||+||||+||++|+++
T Consensus 55 ~~~~il~~~~~Giea~r~~iv~EIq~Vy~~qGV~I~dKHielIv~qMT~kv~i~~~g~s~~l~Ge~v~~~~~~~~N~~~~ 134 (204)
T cd02655 55 NPHDLLRIKFLGPEAVQKYLVEEIQKVYRSQGVNINDKHIEIIVRQMTSKVKIIDPGDSGFLPGELVDLNEFEEENKRLL 134 (204)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCeeecHHHHHHHHHHHhcCeEEecCCCcccCCCceeeHHHHHHHHHHHH
Confidence 455566666 9999999999999999999999999999999999999996644
Q ss_pred --------------ccccccccccCCccccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccc
Q 000235 1358 --------------AITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415 (1815)
Q Consensus 1358 --------------~itR~Gi~~~~~spL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~ 1415 (1815)
+|||++++ ..|+|++||||||+++|++||++|++|.|+|++||||+|+++|+|||+
T Consensus 135 ~~~~~~~~y~p~llGItk~~l~--~~Sfls~ASFqeT~kvL~~AAi~gk~D~L~GlkeNVI~G~liPaGTG~ 204 (204)
T cd02655 135 LLGKKPAKYEPVLLGITKASLN--TESFISAASFQETTKVLTEAAIEGKIDWLRGLKENVILGRLIPAGTGL 204 (204)
T ss_pred hCCCCcccccceeeeeeecccc--CCCccccCChHHHHHHHHHHHhcCCCCCCCCchhheEECCccCCCCCC
Confidence 56666664 479999999999999999999999999999999999999999999994
|
Bacterial RNA polymerase (RNAP) is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. This family also includes the eukaryotic plastid-encoded RNAP beta" subunit. Structure studies suggest that RNAP complexes from different organisms share a crab-claw-shape structure with two pincers defining a central cleft. Beta' and beta, the largest and the second largest subunits of bacterial RNAP, each makes up one pincer and part of the base of the cleft. The C-terminal domain includes a G loop that forms part of the floor of the downstream DNA-binding cavity. The position of the G loop may determine the switch of the bridge helix between flipped-out and normal alpha-helical conformations. |
| >KOG0260 consensus RNA polymerase II, large subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=413.16 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=71.4
Q ss_pred HHhhcHHHHHHHHHHHHHHhhhcCcccccchhHHHHHhhhhccceeccccccccc-----ccCCccccccchHHHHHHHH
Q 000235 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN-----RNDTGPMMRCSFEETVDILL 1385 (1815)
Q Consensus 1311 ~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vn~RHL~LlaD~MT~~G~~~~itR~Gi~-----~~~~spL~~aSFEeT~~~L~ 1385 (1815)
...++|++-|..+.-=...--+.-| .+-+-||.|.+|--...|+-+.++-.|.. ..+.-++-...|-+-..+.+
T Consensus 1149 p~~tvI~ed~e~v~a~~e~pd~D~~-~ispwlLrlelDr~~m~dk~ltm~~ia~~i~~~f~~d~~~i~~ddna~klv~r~ 1227 (1605)
T KOG0260|consen 1149 PQSTVIDEDREFVVAYYEMPDEDVG-RISPWLLRLELDRASMTDKKLTMEQIAEKINRGFGSDLACIFSDDNAEKLVLRL 1227 (1605)
T ss_pred CcceeeccchhhHHhhhcCcccchh-hcChHHHHhhhhhhhcccccccHHHHHHHHHhhccCCCceeecccCCcceEEEE
Confidence 3456666666554433322222223 67778888888887777777766655432 12334666666666666677
Q ss_pred HHHhhcCcccccccccccccCCccccCccc-eeeccc
Q 000235 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGD-CSLYLN 1421 (1815)
Q Consensus 1386 ~AA~~ge~D~l~gvsenIi~G~~~p~GTG~-fdll~~ 1421 (1815)
.+|..++.|.+.+--|+-|||++.--|++. |.|++.
T Consensus 1228 ri~~~~e~D~~l~~Ie~~ml~~~~l~G~~~i~kV~m~ 1264 (1605)
T KOG0260|consen 1228 RIAKEEEDDVFLKCIEANMLGDMTLRGIPDIFKVYMS 1264 (1605)
T ss_pred EecCccchhHHHHHHHHhhhhhcccCCccccceEEEe
Confidence 788888888888888888888888888864 555543
|
|
| >PF04992 RNA_pol_Rpb1_6: RNA polymerase Rpb1, domain 6; InterPro: IPR007075 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-33 Score=309.12 Aligned_cols=185 Identities=51% Similarity=0.881 Sum_probs=156.4
Q ss_pred CCceeeecccccccccchHHHhhhhhhcc--ccCCCCcccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHhhhccC
Q 000235 881 MDSVWIESQTLDSLKMKKSEFDKAFRFEM--DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS 958 (1815)
Q Consensus 881 ~d~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~~~~ 958 (1815)
||++++|.|+++++.+++.+|+++|+++. .+...+..++..+++++|.+|++++.+|++||++|.++|+.||..+++.
T Consensus 1 mD~~~vE~Q~l~~l~~s~~~f~~~Y~~d~~~~~~~~~~~~l~~~v~~~l~~d~~~q~~Ld~E~~qL~~dR~~Lr~~i~~~ 80 (187)
T PF04992_consen 1 MDGAHVENQKLDTLKMSDAKFEKKYRVDLMDDDPEFGRGWLDPEVIEELRNDPEVQKLLDEEYEQLLEDRELLRKEIFPS 80 (187)
T ss_dssp B-GGGEEEEE-TTSSS-HHHHCCCC---TTSTTTS-GCCTCTTH--TTTTTSHCCCHHHHHHHHHHHHHHCCCCSCCSTT
T ss_pred CCcceeccCcCCCCCCCHHHHHhhccccCCCCchhhhhhhCChHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 79999999999999999999999999999 4566777788989999999999999999999999999999999889999
Q ss_pred CCCCCCccccHHHHHHHhhhhcccCCCCCCCCChHHHHHHHHHHHHhhcccCCCCcccHHHHhhhhhhhhhhhhhhhhhH
Q 000235 959 GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038 (1815)
Q Consensus 959 ~~~~~~~p~n~~r~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~lrs~l~~~ 1038 (1815)
++..+++|||+.||||||++.|+|+.+..|+|+|.+|+++|++++++|+|++|+|++|+|+|+|||.||+++|||.|++|
T Consensus 81 g~~~~~LPVNi~RiI~nAq~~f~i~~~~~sdL~P~~Vi~~V~~L~~~L~vv~g~D~ls~Eaq~NAtlLf~i~lRs~LasK 160 (187)
T PF04992_consen 81 GDDKVPLPVNIQRIIWNAQKIFHIDPRKPSDLSPIYVIEKVEELLDRLVVVRGDDPLSREAQENATLLFKILLRSTLASK 160 (187)
T ss_dssp T--EEEEES-HHHHCCCCCCCTT--TTS-BS--HHHHHHHHHHHHTT--SS--SSCCCCHHHHCCCHHHHHHHCCCSSHH
T ss_pred CCcceECCccHHHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHHHHHHhhccCCCcchHHHHhhHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCHHHHHHHHHHHHHHhhcC
Q 000235 1039 RVLKEHRLTREAFEWVIGEIESRFLQS 1065 (1815)
Q Consensus 1039 ~~~~~~~l~~~~~~~~l~ei~~ky~~s 1065 (1815)
+++.+|+|+++||+|+|+||+.||.+|
T Consensus 161 rvi~e~rL~~~AF~wilgEIe~rF~~a 187 (187)
T PF04992_consen 161 RVIEEYRLNKEAFDWILGEIESRFKKA 187 (187)
T ss_dssp HHHHTSB--HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999986
|
Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 6, represents a mobile module of the RNA polymerase. Domain 6 forms part of the shelf module [, ]. This family appears to be specific to the largest subunit of RNA polymerase II.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_M 1Y77_A 3CQZ_A 3GTM_A 1TWA_A 4A3I_A 2NVY_A 2NVT_A 1I6H_A 1TWF_A .... |
| >PF04983 RNA_pol_Rpb1_3: RNA polymerase Rpb1, domain 3; InterPro: IPR007066 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=289.74 Aligned_cols=155 Identities=44% Similarity=0.653 Sum_probs=137.3
Q ss_pred ccccCCCCCCceeccccccccceecccCCCccCHHHHHHHHHhcccCC--CCCCCCcccCccCCcchHHHHHHhcCCCce
Q 000235 513 CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD--GKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590 (1815)
Q Consensus 513 ~i~sp~~g~pi~g~~QD~l~g~~~lT~~d~f~~~~~~~~l~~~~~~~~--~~~~~pai~kp~~lwtGKqi~s~~lp~~in 590 (1815)
||+||++|+|+++++||+|+|+|+||++++|++++|+++++++...+. ...+.|+|++|+++|||||+||++||++++
T Consensus 1 NilSP~~G~Pii~~~QD~vlG~y~LT~~~~f~~~~e~~~~~~~~~~~~~~~~~~~~~I~~~~~~~tgk~~~s~il~~~i~ 80 (158)
T PF04983_consen 1 NILSPANGKPIIGPTQDMVLGAYYLTSEDTFLSRDEAQQALMNGLIDDKKIVLLHPAILKPKELWTGKQTFSRILPNEIN 80 (158)
T ss_dssp GSEETTTTEESSS--SHHHHHHHHHSSTTTEESHHHHHHHHHCSST----CHCSSSSBSSSSSCEECHHHHHTTSHTTHH
T ss_pred CccCCCCCCceEEeccceEeEEEEEEecccccchHHHHHHHHcccccccceeccchhhhccccceeeccHHHHhcccccc
Confidence 799999999999999999999999999999999999999999875543 457899999999999999999999999999
Q ss_pred EeeecccCCCCCCCcCCCCCcEEEEecCeeeeccccccccc-CCcccHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcC
Q 000235 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLG-TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669 (1815)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~d~~v~i~~gell~g~ldK~~~g-~s~~~Lih~i~~~~G~~~a~~~l~~~q~l~~~~l~~~G 669 (1815)
+.... + ..+|+.++|+||+++.|++||+++| .+.++|||.||++||+++|.+|||++|+|+++|++.+|
T Consensus 81 ~~~~~--~--------~~~~~~~~i~~g~~l~g~l~k~~lgk~~~~~li~~i~~~yG~~~~~~~ld~i~~lg~~~~t~~G 150 (158)
T PF04983_consen 81 PEGFS--N--------DPDDGYVVINNGELLSGVLDKKTLGKKSLGSLIHQIYREYGPEATVQFLDAIKRLGFRYLTRSG 150 (158)
T ss_dssp EEEST--S--------CHSSHSEEECTSSEEEC--SHHHHSCSHTTCHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccc--c--------cccccceeecCCccchhheehheecccchhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 98642 0 1226789999999999999999999 77899999999999999999999999999999999999
Q ss_pred ceeeeccC
Q 000235 670 FSIGIGDT 677 (1815)
Q Consensus 670 fSigi~D~ 677 (1815)
||||++|+
T Consensus 151 fSvgi~D~ 158 (158)
T PF04983_consen 151 FSVGIDDM 158 (158)
T ss_dssp BB-SGGGC
T ss_pred eeEecccC
Confidence 99999996
|
Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1ZYR_D 1SMY_D 2A68_N 2O5J_D 3AOH_N 2O5I_D 2CW0_N 2A6H_N 2A69_D 3EQL_D .... |
| >PF05000 RNA_pol_Rpb1_4: RNA polymerase Rpb1, domain 4; InterPro: IPR007083 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-23 Score=210.14 Aligned_cols=105 Identities=51% Similarity=0.821 Sum_probs=91.4
Q ss_pred HHHc-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHhcCCCCcccchhhhhhhccccccCCCc
Q 000235 704 QAQD-KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782 (1815)
Q Consensus 704 ~~~~-~~l~~~~~~~~~~~~e~~v~~~ln~~~~~~~~~~~~~l~~~N~~~~M~~sGsKGS~~N~~Qi~~~lGQQ~~eG~R 782 (1815)
++++ ++++..++++.++.+|..++++|+++++.+++.+.+++..+|++++|+.||||||++|++||+||||||.++|+|
T Consensus 3 ~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~N~l~~M~~SGaKGs~~ni~Qi~g~lGqq~~~g~r 82 (108)
T PF05000_consen 3 DYERYGKLEKKWGKTYEETFEQKINKILNKVRDEIGKIIKKNLPFNNSLLIMINSGAKGSMSNISQISGCLGQQSVEGKR 82 (108)
T ss_dssp HHHCCTHHHHHCTCHHHHHHHHHHHHHHHHCCHHHHHHHHHCSTTTSHHHHHHHSSSS--HHHHHHHHST-EEEEETTSE
T ss_pred chHhhCchHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHhhhhccCCCCHHHHHHHHHHHHHhhccccc
Confidence 3444 566667889999999999999999999999999999998789999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccc
Q 000235 783 IPFGFVDRTLPHFTKDDYGPESRGFV 808 (1815)
Q Consensus 783 ip~~~~~rtLp~f~~~d~~~~~~Gfv 808 (1815)
|+.+|.+||||||.++|.+|+++|||
T Consensus 83 i~~~~~~Rtlp~f~~~~~~~~~~GFI 108 (108)
T PF05000_consen 83 IPRGFSGRTLPHFKPFDESPESRGFI 108 (108)
T ss_dssp S--SSTTCSSTTS-SS-SSTTTTTEE
T ss_pred cccCCCCCcCCCcCCCCCCcccCCCC
Confidence 99999999999999999999999998
|
Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This entry, domain 4, represents the funnel domain. The funnel domain contains the binding site for some elongation factors [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Q 3HKZ_I 1YNJ_D 1HQM_D 1YNN_D 1I6V_D 2GHO_D 2Y0S_W 3IYD_D 3LU0_D .... |
| >PF04990 RNA_pol_Rpb1_7: RNA polymerase Rpb1, domain 7; InterPro: IPR007073 RNA polymerases catalyse the DNA dependent polymerisation of RNA | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-23 Score=212.37 Aligned_cols=135 Identities=61% Similarity=1.041 Sum_probs=108.6
Q ss_pred ccccccceeeEEEEcCCCCceEEEcccceeheeccCCCCcccccccCCcEEEEEechhhhhcccCCHHHHHHHHhhhcCC
Q 000235 1150 TTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD 1229 (1815)
Q Consensus 1150 ~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~lrl~l~~~~~~~~~l~~~~i~~~i~~~~~~ 1229 (1815)
|||++|+++++|+|||++.+|+|++|++||+.||++|+++.....++||+||++||+++|.+|+|+|++|+.+|++.|++
T Consensus 1 TtL~~vt~~teIyYDPdp~~Tvi~eD~e~V~~y~e~pd~~~~~~~~spWlLRieLdr~~m~dk~l~m~~I~~~I~~~f~~ 80 (135)
T PF04990_consen 1 TTLRDVTASTEIYYDPDPRNTVIEEDREFVESYFEIPDEDDDPSRLSPWLLRIELDRKKMIDKKLTMEDIAEKIKEEFGN 80 (135)
T ss_dssp ECCHCHECEEEEEE-SSTTSSSSSTTHCHHHHCCCTT-SSTT-SSBESEEEEEEE-CCCCCCTT--HHHHCCCHHHCCTT
T ss_pred CcHHHhhhheeEEECCCCCCCcchhhHHHHHHHHhCCCcccCcccCCCeEEEEEEcHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999878888999999999999999999999999999999999999
Q ss_pred CceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccccceec
Q 000235 1230 DLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR 1284 (1815)
Q Consensus 1230 ~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 1284 (1815)
+++|+++++|++++++|||+...++...+.+++..+++.||+++|.++|..++++
T Consensus 81 ~l~vi~sddNa~~lViRIRi~~~~~~~~~~~d~~~~dd~~Lr~~e~~lL~~~~Lr 135 (135)
T PF04990_consen 81 DLHVIYSDDNAEKLVIRIRIIKDEDKKEEDEDEQEEDDVFLRRLESNLLDDLTLR 135 (135)
T ss_dssp SEEEEE--TTSSSEEEEEEEB--S---SSSSS--S-CHHHHHHHHHHHCCS-ECC
T ss_pred CeEEEecCCCCcccEEEEEEecCcccccccccchhhHHHHHHHHHHHhhhcCcCC
Confidence 9999999999999999999988653222222222246789999999999988775
|
Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 7, represents a mobile module of the RNA polymerase. Domain 7 interacts with the lobe domain of Rpb2 (IPR007642 from INTERPRO) [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_M 1Y77_A 3CQZ_A 3GTM_A 1TWA_A 4A3I_A 2NVY_A 2NVT_A 1I6H_A 1TWF_A .... |
| >COG0086 RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-20 Score=242.30 Aligned_cols=327 Identities=26% Similarity=0.337 Sum_probs=232.7
Q ss_pred hcCcccCCCchhhHhhhccCCcccccccccccccc--ccccccccccceeeeehhhcccCCCCceEEEeCCCCcchHHHH
Q 000235 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG--VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA 1140 (1815)
Q Consensus 1063 ~~slv~PGEaVG~iAAQSIGEPaTQMTLnTFH~AG--v~~~NVTlGvPRLkEIin~ak~ikTP~mtv~l~~~~~~~~~~a 1140 (1815)
-..++.+++++|..||||+++|.|||++.|||+|| ++..++|+|.|||-++.++ +..+||.|++++...+..+.+.+
T Consensus 407 GDeM~~Hvp~s~ea~AEa~~lm~tq~nilsP~~Ggpiv~~~qD~v~g~ylLt~~d~-~~~~~~~~ei~l~~~~~~~~e~~ 485 (808)
T COG0086 407 GDEMAVHVPASGEAAAEARGLMGTQMNILTPHYGGPIVAPIQDTVGGPYLLTIVDA-KLPSTPVGEIYLKDEYADDREKA 485 (808)
T ss_pred chhhhccccchHHHHHHHHHhhccccccccCCCCCceEeecceEEeccEEEEEecc-cCCCCcceEEEeccccccchhhh
Confidence 34567899999999999999999999999999999 9999999999999999997 88999999999987777778899
Q ss_pred HHHHhhhccccccccceeeEEEEcCCCCceEEEcccceeheeccCCCC-cccccccCCcEEEEEechhhh---hcccC--
Q 000235 1141 KNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE-DIAPEKISPWLLRIELNREMM---VDKKL-- 1214 (1815)
Q Consensus 1141 ~~v~~~le~~tL~dv~~~~~i~ydp~~~~~~i~~d~~~~~~~~~~~~~-~~~~~~~~~~~lrl~l~~~~~---~~~~l-- 1214 (1815)
..+.+.++.++.+++++.+.... .....++..|.+.+..- .++.+ ++........+++-.+++... ...+.
T Consensus 486 ~ai~~~~~~~~~k~i~~~i~~~~--~~~~i~~t~~~~~~~~~-~~~~~~d~~~~i~~~~l~~~~i~k~~~~i~~~~g~~~ 562 (808)
T COG0086 486 EAIAKKIELTTGKVIVSTISPDL--AELSIIVTTDGRRIFNR-GLPEDKDVLVKIVNGKLIKGVIDKKIVTIYREYGPEV 562 (808)
T ss_pred HHHhcccceeeeeEEEEEeeccC--CcceEEEecchhhhhhc-cCCcccceeeEEeccccceeeehhhHHHHHHHhCchh
Confidence 99999999999999887533211 11222233333211100 00100 000000000111112221110 01111
Q ss_pred ---CHHHHHHHHhhhcCCCceeeecCCCccceEEEEEEccCCCCCCCCCCCcchhHHHHHHHHhhccccceecccchhhh
Q 000235 1215 ---SMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAV 1291 (1815)
Q Consensus 1215 ---~~~~i~~~i~~~~~~~~~~~~~~dn~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~G~nl~~v 1291 (1815)
...+..++++..+ ..... ...+.+.. ++ .+.. .+.+.++. ..+|.++..+
T Consensus 563 ~~~~~~~~~dkl~~~~-----~~~~~------~~~~~i~~----~d-~~~~-~~~~e~v~----------~ae~~v~~~i 615 (808)
T COG0086 563 ASKALVKLLDKLKNLG-----IKGIG------GFGIGIGR----KD-IEAE-DEKDEIVI----------EAEGSVLKLI 615 (808)
T ss_pred hHHHHHHHHHHHHHhh-----eeeec------cceEEeec----cc-ccch-HHHHHHHH----------HHHHHHHHHH
Confidence 0001111111110 00000 00011111 00 0000 00112221 2355677778
Q ss_pred hccccccccccccccHHHHHHhhcHHHHHHHHHHHHHHhhhcCccc-ccchhHHHHHhhhhccceecccccccccccCCc
Q 000235 1292 MCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSY-VNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1370 (1815)
Q Consensus 1292 l~~~~vD~~rt~sNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~-Vn~RHL~LlaD~MT~~G~~~~itR~Gi~~~~~s 1370 (1815)
+..+.+|.+++.+||+.+++.++|+||+|+++++|+..+...+|.. ++.+|+++.+|.|+..+....+.++|+.....|
T Consensus 616 ~~~~~g~lt~~~~~~i~e~~e~~~~e~l~~ai~~~~~~~~~~~g~~~~~i~~m~~~Gs~~n~sq~~~~iG~~gv~g~r~~ 695 (808)
T COG0086 616 LQYEEGDLTRTERNNIVEIIEVLGIEALRNAIIEEIKITLEEQGLDFVDIRHMGLSGARMNISQIVQLIGQQGVMGEKIS 695 (808)
T ss_pred HHhhcCCccccCCCCeEEEeehHHHHHHHHHHHHHHhhhHHhcCCcchhHHHHhhhhhccCHHHHHHHhhhheeeccCCC
Confidence 8899999999999999999999999999999999999999999999 999999999999999999999999999988899
Q ss_pred cccccchHHHHHHHHHHHhhcCcccccccccccccCCccccCccceeeccc
Q 000235 1371 PMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421 (1815)
Q Consensus 1371 pL~~aSFEeT~~~L~~AA~~ge~D~l~gvsenIi~G~~~p~GTG~fdll~~ 1421 (1815)
++++++||.|..+ .+|+.+++.+.+.|+++++++|+.+.+|||..|.-+.
T Consensus 696 ~~~~~~Fe~~~~~-~~a~~~i~s~f~eGLt~~e~f~~~~ggR~GlvDTA~K 745 (808)
T COG0086 696 VLARAAFEVTVKH-LEAEGPGESSFLEGLTENEYFGHPIGGRTGLVDTALK 745 (808)
T ss_pred ccccccccccccc-ceeeeeeecccCCCCCcceEEeecCccccchHHHhhh
Confidence 9999999999999 9999999999999999999999999999999998664
|
|
| >PRK14898 DNA-directed RNA polymerase subunit A''; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-10 Score=152.74 Aligned_cols=51 Identities=51% Similarity=0.683 Sum_probs=48.3
Q ss_pred HHhhccCHHHHHHHHHHHHHHhhcCcccCCCchhhHhhhccCCcccccccc
Q 000235 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1091 (1815)
Q Consensus 1041 ~~~~~l~~~~~~~~l~ei~~ky~~slv~PGEaVG~iAAQSIGEPaTQMTLn 1091 (1815)
..+++|+.++|+|++++|+.+|.+++|+||||||++||||||||+|||||.
T Consensus 28 ~~~~~lt~~~~d~Il~~I~~~y~~a~vepge~vG~~aaqsi~~~~~~~~~~ 78 (858)
T PRK14898 28 SKRDGVTEEMVEEIIDEVVSAYLNALVEPYEAVGIVAAQSIGEPGTQMSLP 78 (858)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHhhCCCCCCceeeeeeehhcCCCCccccCC
Confidence 356799999999999999999999999999999999999999999999874
|
|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0002 Score=99.80 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHcCCCC
Q 000235 381 TPYNIERLKELVEYGPHP 398 (1815)
Q Consensus 381 t~~Ni~~l~~lv~ng~~~ 398 (1815)
|..+-.-|++|++.|.+.
T Consensus 848 ts~~a~LL~dLl~~G~dl 865 (3151)
T PHA03247 848 TSPQAILLRELLQRGQDL 865 (3151)
T ss_pred cchhhHHHHHHHHhCCCC
Confidence 556788899999999874
|
|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00036 Score=97.45 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=14.5
Q ss_pred ccceeeeehhhcccCCCCceEEEeCCC
Q 000235 1106 GVPRLREIINVAKKIKTPSLSVFLKPG 1132 (1815)
Q Consensus 1106 GvPRLkEIin~ak~ikTP~mtv~l~~~ 1132 (1815)
||--|+| +-..|..|..+.||..+
T Consensus 1927 ~v~tlRE---A~S~ID~~f~~~yLd~d 1950 (3151)
T PHA03247 1927 GPLELRE---ATSELDLPFATSYLAPD 1950 (3151)
T ss_pred cceehhh---hhhhcccccceeeecCC
Confidence 4545555 22567777777777653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.22 Score=67.05 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=6.8
Q ss_pred HHHHhhhhccce
Q 000235 1344 AILCDTMTYRGH 1355 (1815)
Q Consensus 1344 ~LlaD~MT~~G~ 1355 (1815)
..|+|.|...|.
T Consensus 591 ~~Lg~rl~~~g~ 602 (1049)
T KOG0307|consen 591 DMLGDRLENAGD 602 (1049)
T ss_pred HHHHHHHhhccc
Confidence 345566666664
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.87 Score=61.62 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=4.9
Q ss_pred hccccccccce
Q 000235 1147 LEYTTLRSVTE 1157 (1815)
Q Consensus 1147 le~~tL~dv~~ 1157 (1815)
|+.-.|+++++
T Consensus 402 lk~~~l~~~c~ 412 (1049)
T KOG0307|consen 402 LKDANLGDYCE 412 (1049)
T ss_pred hccchHHHHHH
Confidence 33334555544
|
|
| >KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.84 Score=60.93 Aligned_cols=9 Identities=33% Similarity=0.235 Sum_probs=4.4
Q ss_pred ccccccccc
Q 000235 1357 MAITRHGIN 1365 (1815)
Q Consensus 1357 ~~itR~Gi~ 1365 (1815)
-++.+||..
T Consensus 669 ga~g~~ggg 677 (1024)
T KOG1999|consen 669 GAFGGHGGG 677 (1024)
T ss_pred CCcCcCccC
Confidence 445555543
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.55 E-value=1 Score=58.49 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=6.2
Q ss_pred HHHHHhhceEEe
Q 000235 848 RLVKAMEDIMVK 859 (1815)
Q Consensus 848 rLvk~lEdl~v~ 859 (1815)
+|...+|.|.|+
T Consensus 157 ~l~~CleslRVs 168 (1102)
T KOG1924|consen 157 KLLECLESLRVS 168 (1102)
T ss_pred cHHHHHHHHhhh
Confidence 344455555554
|
|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.24 E-value=51 Score=44.60 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=6.1
Q ss_pred CCCCCCCCCCC
Q 000235 1774 AGYSPSAPGYS 1784 (1815)
Q Consensus 1774 ~~~~P~~p~~s 1784 (1815)
+..+|..+.++
T Consensus 243 p~~iPs~~qv~ 253 (1007)
T KOG1984|consen 243 PNAIPSPPQVS 253 (1007)
T ss_pred hhhCCCchhcc
Confidence 34466666663
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=91.13 E-value=1 Score=58.46 Aligned_cols=17 Identities=0% Similarity=0.016 Sum_probs=8.1
Q ss_pred chhHHHHHHHhhceEEe
Q 000235 843 GYIQRRLVKAMEDIMVK 859 (1815)
Q Consensus 843 GYlqRrLvk~lEdl~v~ 859 (1815)
|...|+..-|+.+..+.
T Consensus 50 ~~~sk~~~~H~~~ss~s 66 (1102)
T KOG1924|consen 50 DFKSKPSPAHLRSSSAS 66 (1102)
T ss_pred ccccCCCcccCCCcccc
Confidence 34444455555444443
|
|
| >KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] | Back alignment and domain information |
|---|
Probab=84.94 E-value=11 Score=50.88 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=3.9
Q ss_pred cchhHHHHH
Q 000235 1339 NYRHLAILC 1347 (1815)
Q Consensus 1339 n~RHL~Lla 1347 (1815)
+.||+.|.+
T Consensus 627 k~k~~~~~g 635 (1024)
T KOG1999|consen 627 KEKNLILAG 635 (1024)
T ss_pred ecCCceecc
Confidence 444444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1815 | ||||
| 3h0g_A | 1752 | Rna Polymerase Ii From Schizosaccharomyces Pombe Le | 0.0 | ||
| 1i3q_A | 1733 | Rna Polymerase Ii Crystal Form I At 3.1 A Resolutio | 0.0 | ||
| 4a3c_A | 1732 | Rna Polymerase Ii Initial Transcribing Complex With | 0.0 | ||
| 3j0k_A | 1455 | Orientation Of Rna Polymerase Ii Within The Human V | 0.0 | ||
| 2waq_A | 880 | The Complete Structure Of The Archaeal 13-Subunit D | 0.0 | ||
| 2pmz_A | 880 | Archaeal Rna Polymerase From Sulfolobus Solfataricu | 0.0 | ||
| 3qqc_A | 436 | Crystal Structure Of Archaeal Spt45 BOUND TO THE RN | 8e-58 | ||
| 2y0s_C | 395 | Crystal Structure Of Sulfolobus Shibatae Rna Polyme | 8e-46 | ||
| 2waq_C | 395 | The Complete Structure Of The Archaeal 13-Subunit D | 8e-46 | ||
| 3hkz_C | 395 | The X-Ray Crystal Structure Of Rna Polymerase From | 3e-45 | ||
| 2pmz_C | 392 | Archaeal Rna Polymerase From Sulfolobus Solfataricu | 4e-45 | ||
| 3iyd_D | 1413 | Three-Dimensional Em Structure Of An Intact Activat | 8e-44 | ||
| 3iyd_D | 1413 | Three-Dimensional Em Structure Of An Intact Activat | 1e-06 | ||
| 3lu0_D | 1407 | Molecular Model Of Escherichia Coli Core Rna Polyme | 8e-44 | ||
| 3lu0_D | 1407 | Molecular Model Of Escherichia Coli Core Rna Polyme | 1e-06 | ||
| 2gho_D | 1233 | Recombinant Thermus Aquaticus Rna Polymerase For St | 5e-40 | ||
| 2gho_D | 1233 | Recombinant Thermus Aquaticus Rna Polymerase For St | 3e-07 | ||
| 2gho_D | 1233 | Recombinant Thermus Aquaticus Rna Polymerase For St | 6e-05 | ||
| 1l9u_D | 1524 | Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A | 7e-40 | ||
| 1l9u_D | 1524 | Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A | 3e-07 | ||
| 1l9u_D | 1524 | Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A | 6e-05 | ||
| 1i6v_D | 1264 | Thermus Aquaticus Core Rna Polymerase-Rifampicin Co | 9e-40 | ||
| 1i6v_D | 1264 | Thermus Aquaticus Core Rna Polymerase-Rifampicin Co | 3e-07 | ||
| 1i6v_D | 1264 | Thermus Aquaticus Core Rna Polymerase-Rifampicin Co | 5e-05 | ||
| 1hqm_D | 1265 | Crystal Structure Of Thermus Aquaticus Core Rna Pol | 4e-39 | ||
| 1hqm_D | 1265 | Crystal Structure Of Thermus Aquaticus Core Rna Pol | 3e-07 | ||
| 1hqm_D | 1265 | Crystal Structure Of Thermus Aquaticus Core Rna Pol | 5e-05 | ||
| 4gzy_D | 1534 | Crystal Structures Of Bacterial Rna Polymerase Paus | 3e-38 | ||
| 4gzy_D | 1534 | Crystal Structures Of Bacterial Rna Polymerase Paus | 4e-08 | ||
| 4gzy_D | 1534 | Crystal Structures Of Bacterial Rna Polymerase Paus | 1e-04 | ||
| 1iw7_D | 1524 | Crystal Structure Of The Rna Polymerase Holoenzyme | 3e-38 | ||
| 1iw7_D | 1524 | Crystal Structure Of The Rna Polymerase Holoenzyme | 4e-08 | ||
| 1iw7_D | 1524 | Crystal Structure Of The Rna Polymerase Holoenzyme | 1e-04 |
| >pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe Length = 1752 | Back alignment and structure |
|
| >pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution Length = 1733 | Back alignment and structure |
|
| >pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt Dna-Rna Hybrid Length = 1732 | Back alignment and structure |
|
| >pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human Vp16-Mediator-Pol Ii-Tfiif Assembly Length = 1455 | Back alignment and structure |
|
| >pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 880 | Back alignment and structure |
|
| >pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 880 | Back alignment and structure |
|
| >pdb|3QQC|A Chain A, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP CLAMP DOMAIN Length = 436 | Back alignment and structure |
|
| >pdb|2Y0S|C Chain C, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In P21 Space Group Length = 395 | Back alignment and structure |
|
| >pdb|2WAQ|C Chain C, The Complete Structure Of The Archaeal 13-Subunit Dna- Directed Rna Polymerase Length = 395 | Back alignment and structure |
|
| >pdb|3HKZ|C Chain C, The X-Ray Crystal Structure Of Rna Polymerase From Archaea Length = 395 | Back alignment and structure |
|
| >pdb|2PMZ|C Chain C, Archaeal Rna Polymerase From Sulfolobus Solfataricus Length = 392 | Back alignment and structure |
|
| >pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact Activator-Dependent Transcription Initiation Complex Length = 1413 | Back alignment and structure |
|
| >pdb|3IYD|D Chain D, Three-Dimensional Em Structure Of An Intact Activator-Dependent Transcription Initiation Complex Length = 1413 | Back alignment and structure |
|
| >pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase Length = 1407 | Back alignment and structure |
|
| >pdb|3LU0|D Chain D, Molecular Model Of Escherichia Coli Core Rna Polymerase Length = 1407 | Back alignment and structure |
|
| >pdb|2GHO|D Chain D, Recombinant Thermus Aquaticus Rna Polymerase For Structural Studies Length = 1233 | Back alignment and structure |
|
| >pdb|2GHO|D Chain D, Recombinant Thermus Aquaticus Rna Polymerase For Structural Studies Length = 1233 | Back alignment and structure |
|
| >pdb|2GHO|D Chain D, Recombinant Thermus Aquaticus Rna Polymerase For Structural Studies Length = 1233 | Back alignment and structure |
|
| >pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1524 | Back alignment and structure |
|
| >pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1524 | Back alignment and structure |
|
| >pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution Length = 1524 | Back alignment and structure |
|
| >pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex Length = 1264 | Back alignment and structure |
|
| >pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex Length = 1264 | Back alignment and structure |
|
| >pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex Length = 1264 | Back alignment and structure |
|
| >pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 1265 | Back alignment and structure |
|
| >pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 1265 | Back alignment and structure |
|
| >pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase- Includes Complete Structure With Side-Chains (Except For Disordered Regions)-Further Refined From Original Deposition-Contains Additional Sequence Information Length = 1265 | Back alignment and structure |
|
| >pdb|4GZY|D Chain D, Crystal Structures Of Bacterial Rna Polymerase Paused Elongation Complexes Length = 1534 | Back alignment and structure |
|
| >pdb|4GZY|D Chain D, Crystal Structures Of Bacterial Rna Polymerase Paused Elongation Complexes Length = 1534 | Back alignment and structure |
|
| >pdb|4GZY|D Chain D, Crystal Structures Of Bacterial Rna Polymerase Paused Elongation Complexes Length = 1534 | Back alignment and structure |
|
| >pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1524 | Back alignment and structure |
|
| >pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1524 | Back alignment and structure |
|
| >pdb|1IW7|D Chain D, Crystal Structure Of The Rna Polymerase Holoenzyme From Thermus Thermophilus At 2.6a Resolution Length = 1524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 2238 bits (5799), Expect = 0.0
Identities = 1042/1797 (57%), Positives = 1288/1797 (71%), Gaps = 102/1797 (5%)
Query: 4 RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTID 61
+F S + +V VQFGILSP+EIR MSV +IE ET + +P+ GGL DPRLGTID
Sbjct: 5 QFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTID 64
Query: 62 RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
R+ KC+TC MA+CPGHFGH+ELAKP+FHIGF+ + I+ VC+NC K+ D + KF
Sbjct: 65 RQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKF 124
Query: 122 KQALKIRNPKNRLKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTI 180
+ R+PKNRL + + CK K C+ G GGCGA QP +
Sbjct: 125 NDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRK 184
Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
+G+++ +K + ++D E K+ L+ V + IS ED LGLN +YAR
Sbjct: 185 DGLRLWGSWKRGKDESDLPE--------KRLLSPLEVHTIFTHISSEDLAHLGLNEQYAR 236
Query: 241 PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
PDWMI+ VLP+PPP VRPS DDLTH+L+ II+ N N+RR E+ GAPAHI+S
Sbjct: 237 PDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVS 296
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
E+ QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 297 EYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSAR 356
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
TVIT DP +++D+LGVP SIA LTYPETVTPYNI +L+ELV GP PG AKYIIR
Sbjct: 357 TVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG---AKYIIR 413
Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
D G+R+DLRY K++ D L G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYST
Sbjct: 414 DTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYST 473
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDT
Sbjct: 474 FRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDT 533
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
L G RK + RD F+ ++ MNI++W D+DG +P P ILKP+ LWTGKQ+ +LIIPK IN
Sbjct: 534 LAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGIN 593
Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
L R + ++ D+ + IE GE++ G + KKT+G S G L+H IW+E GP+
Sbjct: 594 LIRDDDKQSLSNPT-----DSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEIC 648
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
+ F Q +VNYWLL N FSIGIGDTIADA TM+ + T+ +A+ V I+ AQ L
Sbjct: 649 KGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRL 708
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
+PEPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+
Sbjct: 709 KPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMS 768
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQ VEGKRIPFGF RTLPHF KDD PESRGF+ENSYLRGLTPQEFFFHAM GRE
Sbjct: 769 ACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGRE 828
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+D+ +E Q
Sbjct: 829 GLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV 888
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
DSL++ +F+K +R ++ E+ YM +D ++D+ D E +L ADR
Sbjct: 889 FDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADREL 944
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I GD+ WPLPVN++R+I NA + F ++ ++P+D+ P +++ +++L +L +
Sbjct: 945 LCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFR 1004
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G D ++ + Q NATL F ILLRS FA KRV+ E+RL + AFEW++GE+E+RF Q++V+PG
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPSL+++L
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P + + + AKNVQ +E+TTL +VT ATE+ YDPDP T+IEED +FV++++ +PDE++
Sbjct: 1125 PWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV 1184
Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
K SPWLLR+EL+R M+DKKLSM+ VA KI + F+ DL I+++DNADKLI+R R
Sbjct: 1185 EENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCR 1244
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
I+ D+ K E +D E+DVFLK IE +ML ++LR
Sbjct: 1245 IIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTF 1304
Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
G+NL M E VDA RT SN +EI+++LGIEA R ALL ELR VI F
Sbjct: 1305 ERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEF 1364
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
DGSYVNYRHLA+LCD MT RGHLMAITRHGINR +TG +MRCSFEETV+IL+DAA E
Sbjct: 1365 DGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEK 1424
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSG 1453
D +G++ENIMLGQLAP+GTG +YL+ +ML N + G G T +G
Sbjct: 1425 DDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGSGMG-TSQLPEGAG 1483
Query: 1454 TPYHDG-MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGY 1512
TPY M+ G++ SP A FSP V G + Y SP
Sbjct: 1484 TPYERSPMVDSGFVGSP-------DAAAFSPLVQGGSEGREGFGDYGLLG-AASPYKGVQ 1535
Query: 1513 SP--TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP 1570
SP TSP S SPGY TSP YSP+SP Y +SP Y P+SP+YSPTSPSYSPTSPSYSP
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGY-STSPAYMPSSPSYSPTSPSYSPTSPSYSP 1594
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
TSPSYSPTSPSYS TSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPS
Sbjct: 1595 TSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1654
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP YSPTSPSYSPTSP+YSPT
Sbjct: 1655 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1714
Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
SP +YSP+SP YSPTSP+YSPTS SYSPTSPSYSP+SP+
Sbjct: 1715 SP-------------SYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 322 bits (825), Expect = 5e-89
Identities = 157/299 (52%), Positives = 187/299 (62%), Gaps = 32/299 (10%)
Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP------ 1584
YS + + + G + +P SP SP + ++SP
Sbjct: 1457 MNYSLGTAVPTLAGSGMGTSQLPEGAGTPY--ERSPMVDSGFVG-SPDAAAFSPLVQGGS 1513
Query: 1585 ----------TSPSYSPTSPSYSP--TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
+ SP SP TSP S SP Y TSP+YSP+SP Y TSP+Y
Sbjct: 1514 EGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGY-STSPAYM 1572
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
P+SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YS TSP YSPTSPSYSPTSP+YSPTSP
Sbjct: 1573 PSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP 1632
Query: 1693 SYNPQSAKYSP-SLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
SY+P S YSP S +YSP+SP SP SP YSPTSP+YSPTS SYSPTSPSYSP+SP+YSP
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Query: 1751 SSPYNAGGGNPDYSPSSPQYSP-SAGYSPSAPGYSPSSTS------QYTPQTNRDDSTT 1802
+SP +P YSP+SP YSP S YSP++P YSP+S S Y+P + T+
Sbjct: 1693 TSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 294 bits (753), Expect = 2e-80
Identities = 141/289 (48%), Positives = 165/289 (57%), Gaps = 46/289 (15%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
PT G + + T SP SP + ++SP S +
Sbjct: 1466 PTLAGSGMGTSQLPEGAGTPYERSPMVDS-GFVGSPDAAAFSPLVQGGSEGREGFGDYGL 1524
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
SP SP Y TSP S SP Y TSP+YSP+SP Y TSP+Y P+SPSYSP
Sbjct: 1525 L-GAASPYKGVQSPGY--TSPFSSAMSPGYGLTSPSYSPSSPGY-STSPAYMPSSPSYSP 1580
Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
TSPSYSPTSPSYSPTSPSYSPTSP+YS TSP YSPTSPSYSPTSP+YSPTSPSY
Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSY------ 1634
Query: 1701 YSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
SPTSP+YSPTS SYSPTSPSYSP+SP+YSP+SP
Sbjct: 1635 --------------------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS------ 1668
Query: 1761 PDYSPSSPQYSP-SAGYSPSAPGYSPSS------TSQYTPQTNRDDSTT 1802
YSP+SP YSP S YSP++P YSP+S + Y+P + T+
Sbjct: 1669 --YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715
|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 6e-06
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
+ + + P L+ + + P + T SP S SP + SP GG
Sbjct: 1453 QDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGG 1512
Query: 1759 GNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
Y SP SP TS ++
Sbjct: 1513 SEGREGFGD--YGLLGAASPYKGVQSPGYTSPFSS 1545
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 2181 bits (5651), Expect = 0.0
Identities = 962/1751 (54%), Positives = 1232/1751 (70%), Gaps = 77/1751 (4%)
Query: 6 PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGET--TERGKPKPGGLSDPRLGTIDRK 63
YS A + V+ VQFG+ SP+E+R +SV +I ET + + K GGL+DPRLG+IDR
Sbjct: 5 QYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRN 64
Query: 64 MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
+KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE + +Q
Sbjct: 65 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQ 124
Query: 124 ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
AL I++ K R I CK K CE + + ++GGCG QP + +G+
Sbjct: 125 ALAIKDSKKRFAAIWTLCKTKMVCETDVP-----SEDDPTQLVSRGGCGNTQPTIRKDGL 179
Query: 184 KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
K++ +K R D E + L+ E +L + K IS +D LG N ++RP+W
Sbjct: 180 KLVGSWKKDRATGDADE------PELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEW 233
Query: 244 MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
MIL LP+PPPPVRPS DDLT +LA I++ N +L E NGAP H I E
Sbjct: 234 MILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAE 293
Query: 294 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 294 SLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVI 353
Query: 354 TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
+ DP + +DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG AKY+IRD G
Sbjct: 354 SGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSG 410
Query: 414 QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRL
Sbjct: 411 DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRL 470
Query: 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
NLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL G
Sbjct: 471 NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 530
Query: 534 CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
RK+T RDTFIE D +N+L W D+DG +P P I+KP+PLW+GKQ+ ++ IP I+L R
Sbjct: 531 IRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR 590
Query: 594 TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
D +L+ D + I G+++ G + KKT+G+S G LIHV+ E GP K
Sbjct: 591 F-----DEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKL 645
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
G+ Q +VN+WLL N FS GIGDTIAD TM I +TI++AK V ++ K+AQ L +
Sbjct: 646 FGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAK 705
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
G T+ ESFE+ V + LN ARD+AG A+ +L + NN+K MV AGSKGSFINI+QM+ACV
Sbjct: 706 HGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACV 765
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 766 GQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI 825
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
DTAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+ IE Q+LD+
Sbjct: 826 DTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDT 885
Query: 894 LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
+ + F+K +R ++ + + L E ++ +L+ + D E ++L DR L
Sbjct: 886 IGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFL-R 944
Query: 954 EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
E+ G+++WPLPVN++R+I NAQ+TF +D +PSD+ ++V V LQE L V+ G++
Sbjct: 945 EVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKN 1004
Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
+ AQ++A F LLRS A++RVL+E+RLT++AF+WV+ IE++FL+S+V PGEM+
Sbjct: 1005 EIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMV 1064
Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+PG
Sbjct: 1065 GVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGH 1124
Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
+ +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+I ED E ++ ++ + DE+
Sbjct: 1125 AADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQS 1184
Query: 1194 --KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
+ SPWLLR+EL+R M DK L+M V E+I Q F +DL I+++DN +KLI+R R++
Sbjct: 1185 FDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVR 1244
Query: 1252 DEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------------------- 1284
++ + AE+D LKKIE+ ML + LR
Sbjct: 1245 PKSLD---AETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKE 1301
Query: 1285 --------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
GVNL VM +D R +N I+I+EVLGIEA R AL E+ VI+ DGS
Sbjct: 1302 PEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGS 1361
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A AE D
Sbjct: 1362 YVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDC 1421
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPY 1456
RGV+EN++LGQ+APIGTG + +++E L + Q + +E + G S SG
Sbjct: 1422 RGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVN 1481
Query: 1457 HDGMMSPGYLFSPNLR--LSPVTDAQFSPYVG---GMAFSPTSSPGYSPSSPGYSPSSPG 1511
D + +FSP + + F+ Y G G A SP + G +P+SPG+ SSPG
Sbjct: 1482 ADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPG 1541
Query: 1512 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
+SPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSYSPTSPSYSPT
Sbjct: 1542 FSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1601
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1602 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP YSPTSP YSP SP YSP
Sbjct: 1662 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQ 1721
Query: 1692 PSYNPQSAKYS 1702
+ S
Sbjct: 1722 DEQKHNENENS 1732
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 330 bits (846), Expect = 1e-91
Identities = 156/269 (57%), Positives = 181/269 (67%), Gaps = 5/269 (1%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G YS S + S S S + ++ + +
Sbjct: 1465 GQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGA-DYGEATSPF 1523
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
+ +PTSP + +SP +SPTSP YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1524 GAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1583
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPS 1710
YSPTSPSYSPTSP+YSPTSP YSPTSPSYSPTSP+YSPTSPSY+P S YSP S +YSP+
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1643
Query: 1711 SPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
SP SP SP YSPTSP YSPTS SYSPTSPSYSP+SP+YSP+SP + +P+YSP+SP
Sbjct: 1644 SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPS 1702
Query: 1770 YSP-SAGYSPSAPGYSPSSTSQYTPQTNR 1797
YSP S GYSP +P YSP Q +
Sbjct: 1703 YSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 8e-70
Identities = 127/266 (47%), Positives = 155/266 (58%), Gaps = 30/266 (11%)
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
+ G YS S + S S S + ++ +
Sbjct: 1457 QKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGA-D 1515
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
+ + +PTSP + +SP +SPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP
Sbjct: 1516 YGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSP 1575
Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
SYSPTSP+YSPTSP YSPTSPSYSPTSP+YSPTSPSY
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----------------------- 1612
Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP-SAGY 1776
SPTSP+YSPTS SYSPTSPSYSP+SP+YSP+SP +P YSP+SP YSP S Y
Sbjct: 1613 ---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPSY 1668
Query: 1777 SPSAPGYSPSSTSQYTPQTNRDDSTT 1802
SP++P YSP+S Y+P + T+
Sbjct: 1669 SPTSPSYSPTSP-SYSPTSPSYSPTS 1693
|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 2e-55
Identities = 106/245 (43%), Positives = 129/245 (52%), Gaps = 44/245 (17%)
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
YS S + S S S + ++ A
Sbjct: 1466 QDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGA-DYGEATSPFG 1524
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
+ +PTSP + +SP +SPTSP+YSPTSP+YSPTSPSYSPTSP+YSPTSP YSPTSPSY
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584
Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS 1740
SPTSP+YSPTSP YSPTSP+YSPTS SYSPTSPS
Sbjct: 1585 SPTSPSYSPTSP--------------------------SYSPTSPSYSPTSPSYSPTSPS 1618
Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP-SAGYSPSAPGYSPSSTSQYTPQTNRDD 1799
YSP+SP+YSP+SP YSP S YSP++P YSP+S Y+P +
Sbjct: 1619 YSPTSPSYSPTSP---------------SYSPTSPSYSPTSPSYSPTS-PSYSPTSPAYS 1662
Query: 1800 STTKD 1804
T+
Sbjct: 1663 PTSPS 1667
|
| >4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A 2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A Length = 880 | Back alignment and structure |
|---|
Score = 1251 bits (3239), Expect = 0.0
Identities = 369/909 (40%), Positives = 521/909 (57%), Gaps = 56/909 (6%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ ++FGILSPDEIR+MSV I + E G P G + DPRLG I+ KC TC
Sbjct: 5 NIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNT 64
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132
+ CPGHFGH+EL +P+ H+GF+K V +++ C C ++ ED+ + + K
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 133 RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
+ K + CG +Q K+ +E E +
Sbjct: 125 WPSAARRLTEYVKKTAMK--------------AQVCPHCGEKQFKIKLEKPYNFYEERK- 169
Query: 193 RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
E LT + L+++ + D ++LG +P +RP+WMIL VLP+P
Sbjct: 170 --------------EGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEWMILTVLPVP 215
Query: 253 PPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
P +RPS DDLTH+L I+R NE L+ GAP II + LLQ+H+AT
Sbjct: 216 PITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVAT 275
Query: 303 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
YFDNE+PG P + RSGRP++++ RLK KEGR RGNL GKRVDFS+RTVI+PDP I+ID
Sbjct: 276 YFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISID 335
Query: 363 QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
++GVP IA LT PE +TP+NIE+L++ V GP PG Y+IR DG+R+DLRY+K
Sbjct: 336 EVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGA---NYVIRPDGRRIDLRYVK 392
Query: 423 KSSD--HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
+ L GY VERHL DGD VLFNRQPSLH++S+M HR++++ TFRLNL V P
Sbjct: 393 DRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPP 452
Query: 481 YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
YNADFDGDEMN+HVPQS E AE E+M+V K I++P+ P++G QD + G +T +
Sbjct: 453 YNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVK 512
Query: 541 DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW--H 598
T + K+ ++ D + +P IL PR +TGKQV + +PK N A
Sbjct: 513 TTLLTKEEAQQ-ILGVADVKIDLGEPAILAPREYYTGKQVVSAFLPKDFNFHGQANVSSG 571
Query: 599 ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHT 657
K D+ V I+ G LL G KK +G S++H + +E + + + +
Sbjct: 572 PRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNL 631
Query: 658 QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
+ ++ F++ + D + I + I +AK V NLI++ ++ LEP PGRT
Sbjct: 632 FRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEPIPGRT 691
Query: 718 MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
+ ES EN + L+ R AG A K L N M G++GS +NI+QM A +GQQ+
Sbjct: 692 LEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAMLGQQS 751
Query: 778 VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
V G+RI G++ RTLPHF D PE+RGF+ +S+ GL P E FFHA GGREGL+DTAV
Sbjct: 752 VRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAV 811
Query: 838 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
+TS++GY+QRRL+ A+ D+ +YDGTVR+ G+VIQ YG+DG+ ++ K
Sbjct: 812 RTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVIQVAYGDDGVFPMYSA-------HGK 864
Query: 898 KSEFDKAFR 906
+ ++ F
Sbjct: 865 TVDVNRIFE 873
|
| >3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus} Length = 436 | Back alignment and structure |
|---|
Score = 574 bits (1482), Expect = 0.0
Identities = 139/414 (33%), Positives = 206/414 (49%), Gaps = 50/414 (12%)
Query: 1 MDTRFPYSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLG 58
M R + +E K + ++FGILSP EIR+MS V++ +T + G P GG+ D R+G
Sbjct: 54 MVIRPKLNLSEGGKVIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMG 113
Query: 59 TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
ID ++CETC ECPGHFGH+ELA+P+ H+GF KT+ I+ S C C +I +++
Sbjct: 114 VIDPGLRCETCGGRAGECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEE 173
Query: 119 HK-FKQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP 176
+ + + ++ RN ++ +I+ K K + CGA Q
Sbjct: 174 IEEYMKKIELARNRRSEFNEIIKEIHKKAKE-----------------RMVCPHCGAPQY 216
Query: 177 KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
+ E + E + + N+ + +L V L++I D+D LLGL+P
Sbjct: 217 PIKFEKPTIYWEIRKDEQGNEYRHRL----------MPTEVRDWLEKIPDKDLPLLGLDP 266
Query: 237 KYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPA 286
+ +RP+WM+L VLP+PP RPS DDLTH+L IIR N L++ GAP
Sbjct: 267 EKSRPEWMVLTVLPVPPVTARPSITLETGIRAEDDLTHKLVDIIRINNRLKQNIEAGAPQ 326
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
II + LLQ+H+ TY +NE PG P A +SGRP+K++ RLK KEGR RGNL G
Sbjct: 327 LIIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGGAGS 386
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP--HP 398
+ + ++ E N+ + E V G H
Sbjct: 387 GAGSGSVLARA-------AFEITVQHLFEAAEKGEVDNLNGVIENVLIGQKHHH 433
|
| >4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C 4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C Length = 395 | Back alignment and structure |
|---|
Score = 414 bits (1065), Expect = e-131
Identities = 123/432 (28%), Positives = 198/432 (45%), Gaps = 47/432 (10%)
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
E + + L E K A+ + + KE +TR+ + + +
Sbjct: 2 ENVIDEKDKSYLE-EKVKQASNILPQKIVEDLKNLISNKEVLVTRDEIDKIFDLAIKEYS 60
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
+ L+APGE IG VAAQS+GEP TQMTL TFH+AG+ NVTLG+PRL EI++ K TP
Sbjct: 61 EGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTP 120
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
++++L KE+A V LEYT + +V +T +
Sbjct: 121 MMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDI-------------------- 160
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
+ + ++L+ EM+ DK +++ V + IN+ + ++ N
Sbjct: 161 ------------ASMSIILQLDNEMLKDKGVTVDDVKKAINRLKLGEFVIDESEGN---- 204
Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIES---------NMLTEMALRGVNLLAVMCH 1294
L I N ++ + +K I+ + G NL V+
Sbjct: 205 TLNISFANIDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDEYIILTDGSNLSGVLSV 264
Query: 1295 EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRG 1354
+ VD + +N++ EI EV GIEA R ++ E+ V++ G V+ RH+ ++ D MT G
Sbjct: 265 KGVDIAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTG 324
Query: 1355 HLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
+ I RHG+ + R +FE TV LLDAA + + +GV ENI++G +GTG
Sbjct: 325 VVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTG 384
Query: 1415 DCSLYLNDEMLK 1426
L + +L+
Sbjct: 385 MVELTM-RPILR 395
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 2e-56
Identities = 156/684 (22%), Positives = 266/684 (38%), Gaps = 133/684 (19%)
Query: 240 RPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMIL+ +P+ PP +RP + DL +I N L++ GAP II
Sbjct: 508 RPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIII 567
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + DN G P S RP++S+ L K+GR R NL+GKRVD+S
Sbjct: 568 RNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSG 627
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
R+VI P + + Q G+P +AL L P LK++ E G P K + +
Sbjct: 628 RSVIVVGPQLKLHQCGLPKRMALELFKPFL--------LKKMEEKG-IAPNVKAARRMLE 678
Query: 410 RDDGQRLDL-RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM--------G 460
R + ++ L++ + VL NR P+LH++ I G
Sbjct: 679 RQRDIKDEVWDALEEVIHGKV---------------VLLNRAPTLHRLGIQAFQPVLVEG 723
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
I++ P V +NADFDGD+M +HVP S +AE M+ ++SP S
Sbjct: 724 QSIQLHPL--------VCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASG 775
Query: 521 RPVMGIVQDTLLGCRKIT--KRDTFIEKDVFMN--------------------ILMWWED 558
P+ +D +LG IT +++ F +
Sbjct: 776 EPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETS 835
Query: 559 FDGKVPQPTILKPRPLWT--GKQVFNLIIPKQIN--LFRTAAWHADNDKGILTAGDTLVR 614
L G ++ + T+ + + A +
Sbjct: 836 VGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKV 895
Query: 615 IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
+ L K +L L++ + +G + + L ++ + + +IGI
Sbjct: 896 AWELIQLDVPQEKNSL----KDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGI 951
Query: 675 GD-TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
D I + K + +A + + + + L T E + +++ Q+
Sbjct: 952 DDAVIPEEK-----KQYLEEADRKLLQIEQAYEMGFL------TDRERY-DQILQLWTET 999
Query: 734 RDEAGSSAQKSLSES---NNLKAMVTAGSKGSFINISQ-------MTACVGQQNVEGKRI 783
++ + K+ E+ N L M +G++G+ I Q M G+
Sbjct: 1000 TEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQ------KPSGETF 1053
Query: 784 PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
+P V +S+ GLT E+F + G R+G DTA++T+++G
Sbjct: 1054 E-------VP--------------VRSSFREGLTVLEYFISSHGARKGGADTALRTADSG 1092
Query: 844 YIQRRLVKAMEDIMVKYD--GTVR 865
Y+ R+LV +I+V+ GT
Sbjct: 1093 YLTRKLVDVTHEIVVREADCGTTN 1116
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 5e-11
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV-SAKNVTLGVPRLREIINV 1116
V+ GE +G VAAQSIGEP TQ+T+ TFH GV A ++T G+PR+ E+
Sbjct: 1214 PVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEA 1265
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM------------------ 1350
+++E G EAV R L++E++ V G ++ +H+ I+ M
Sbjct: 1334 QLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQ 1393
Query: 1351 ----------------------TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
++ LM +T+ ++ + SF+ T +L +AA
Sbjct: 1394 VLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTK--SWLSAASFQNTTHVLTEAA 1451
Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTG 1414
+ + D L G+ EN++LG+L P GTG
Sbjct: 1452 IAGKKDELIGLKENVILGRLIPAGTG 1477
|
| >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 49/266 (18%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRL-GTID---------RKMK 65
V+ + SP++IR S ++E ET KP+ GL D R+ G I ++ +
Sbjct: 8 VRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQR 67
Query: 66 -----CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED 117
CE C + + GH+ELA P HI F+K V S + +L
Sbjct: 68 FEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKI-------GTLL---- 116
Query: 118 DHKFKQALKI--------RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG 169
D + ++ +PK + + K + + +E + +
Sbjct: 117 DLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTD--EEYR---ELRYGKQETYPL 171
Query: 170 GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDC 229
G E + E D L R+ + + R+
Sbjct: 172 PPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYR-FPRRVRVEYVKKERAGLRLPLAA- 229
Query: 230 QLLGLNPKYARPDWMILQVLPIPPPP 255
+ + +P ++ ++
Sbjct: 230 ---WVEKEAYKPGEILAELPEPYLFR 252
|
| >1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D Length = 1265 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 1e-53
Identities = 155/699 (22%), Positives = 261/699 (37%), Gaps = 162/699 (23%)
Query: 240 RPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMIL+ +P+ PP +RP + DL +I N L++ GAP II
Sbjct: 248 RPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIII 307
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + DN G P S RP++S+ L K+GR R NL+GKRVD+S
Sbjct: 308 RNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSG 367
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
R+VI P + + Q G+P +AL L P LK++ E P K + +
Sbjct: 368 RSVIVVGPQLKLHQCGLPKRMALELFKPFL--------LKKMEEKA-FAPNVKAARRMLE 418
Query: 410 RDDGQRLDL-RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM--------G 460
R + ++ L++ + VL NR P+LH++ I G
Sbjct: 419 RQRDIKDEVWDALEEVIHGKV---------------VLLNRAPTLHRLGIQAFQPVLVEG 463
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
I++ P V +NADFDGD+M +HVP S +AE M+ ++SP S
Sbjct: 464 QSIQLHPL--------VCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASG 515
Query: 521 RPVMGIVQDTLLGCRKIT--KRDTFIEKDVFMN--------------------ILMWWED 558
P+ +D +LG IT +++ F +
Sbjct: 516 EPLAKPSRDIILGLYYITQVRKEKKGAGMAFATPEEALAAYERGEVALNAPIVVAGRETS 575
Query: 559 FDGKVPQPTILKPRPLWT--GKQVFNLIIPKQINLFRTAAW--HADNDKGILTAGDTLVR 614
L G + + R + + A
Sbjct: 576 VGRLKFVFANPDEALLAVAHGLLDLQDTVTTRYLGRRLETNPGRILFARIVGEAVGDEKV 635
Query: 615 IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL--------------GHTQWL 660
++ + K +L L++ + +G + + L G
Sbjct: 636 AQELIQMDVPQEKNSL----KDLVYQAFLRLGMEKTARLLDALKYYGFTLSTTSG----- 686
Query: 661 VNYWLLQNAFSIGIGD-TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR-TM 718
+IGI D I + K + +A ++ + + + G T
Sbjct: 687 --------IITIGIDDAVIPEEKQ-----RYLEEADRKLRQIEQAYEM-------GFLTD 726
Query: 719 MESFENKVNQVLNTARDEAGSSAQKSLSES---NNLKAMVTAGSKGSFINISQ------- 768
E + ++V Q+ ++ + + E+ N L M +G++G+ I Q
Sbjct: 727 RERY-DQVIQLWTETTEKVTQAVFNNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGL 785
Query: 769 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
M G+ +P V +S+ GLT E+F + G
Sbjct: 786 MQ------KPSGETFE-------VP--------------VRSSFREGLTVLEYFISSHGA 818
Query: 829 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 865
R+G DTA++T+++GY+ R+LV +I+V+ GT +
Sbjct: 819 RKGGADTALRTADSGYLTRKLVDVAHEIVVREADCGTTK 857
|
| >1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D Length = 1265 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-11
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV-SAKNVTLGVPRLREI 1113
V+ GE +G VAA+SIGEP TQ+T+ TFH GV ++T G+PR+ E+
Sbjct: 955 PVSIGEAVGVVAAESIGEPGTQLTMRTFHTGGVAVGTDITQGLPRVIEL 1003
|
| >1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D Length = 1265 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-06
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM------------------ 1350
+++E G EAV R L+DE++ V G ++ +H+ I+ M
Sbjct: 1075 QLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSPLLEGQ 1134
Query: 1351 ----------------------TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
++ LM +T+ ++ + SF+ T +L +AA
Sbjct: 1135 VLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKSALSTKSW--LSAASFQNTTHVLTEAA 1192
Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTG 1414
+ + D L G+ EN++LG+L P GTG
Sbjct: 1193 IAGKKDELIGLKENVILGRLIPAGTG 1218
|
| >3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D* Length = 1407 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 1e-50
Identities = 179/700 (25%), Positives = 282/700 (40%), Gaps = 188/700 (26%)
Query: 240 RPDWMILQVLPIPPPPVRP-----------SD--DLTHQLAMIIRHNENLRRQERNGAPA 286
+P+WMIL VLP+ PP +RP SD DL ++ I R+N L+R AP
Sbjct: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV--INRNNR-LKRLLDLAAPD 289
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
I+ ++LQ + DN G+ T + RP+KS+ +K K+GR R NL+GKRVD
Sbjct: 290 IIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
+S R+VIT P + + Q G+P +AL L P +L G K K
Sbjct: 349 YSGRSVITVGPYLRLHQCGLPKKMALELFKPFI--------YGKLELRG-LATTIKAAKK 399
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM------- 459
+ R++ D+ L + H VL NR P+LH++ I
Sbjct: 400 MVEREEAVVWDI------------LDEVIREHP-----VLLNRAPTLHRLGIQAFEPVLI 442
Query: 460 -GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
G I++ P L V + YNADFDGD+M +HVP + E + E LMM I+SP
Sbjct: 443 EGKAIQLHP-----L---VCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494
Query: 519 SNRPVMGIV--QDTLLGCRKIT--KRDTFIEKDVFMN----------------------I 552
+ P+ IV QD +LG +T + E V I
Sbjct: 495 NGEPI--IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552
Query: 553 LMWWEDFDGKVPQPTILKPRPLWT--GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGD 610
+ +D +G++ T L T G+ + +I+PK + +
Sbjct: 553 TEYEKDANGELVAKTSL----KDTTVGRAILWMIVPKGLP-Y------------------ 589
Query: 611 TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
+++ L KK + +++ + +G F + + ++
Sbjct: 590 --------SIVNQALGKKAI----SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637
Query: 671 SIGIGD-TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
S+GI D I + K ++ IS+A+ V + +Q Q + T E + NKV +
Sbjct: 638 SVGIDDMVIPEKK-----HEIISEAEAEVAEIQEQFQSGLV------TAGERY-NKVIDI 685
Query: 730 LNTARDEAGSSAQKSLSES---------------NNLKAMVTAGSKGSFINISQ------ 768
A D + +L N++ M +G++GS I Q
Sbjct: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745
Query: 769 -MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
M +G I P + ++ GL ++F G
Sbjct: 746 LMA------KPDGSIIE-------TP--------------ITANFREGLNVLQYFISTHG 778
Query: 828 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 865
R+GL DTA+KT+ +GY+ RRLV +D++V D GT
Sbjct: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE 818
|
| >3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D* Length = 1407 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-10
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
++ GE IG +AAQSIGEP TQ+T+ TFH G +++ +++
Sbjct: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954
|
| >3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D* Length = 1407 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 44/147 (29%)
Query: 1309 EIIEVLGIEAVRRALLDE---------------------------LRVVISFD-----GS 1336
+I+ + G+ AV R +++E +V + G
Sbjct: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278
Query: 1337 YVNYRHLAILCDTM--------TYRGHLMAITRHGINRNDTGPMMRC-SFEETVDILLDA 1387
V Y + I + TY L+ IT+ + T + SF+ET +L +A
Sbjct: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA---TESFISAASFQETTRVLTEA 1335
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTG 1414
AV + D LRG+ EN+++G+L P GTG
Sbjct: 1336 AVAGKRDELRGLKENVIVGRLIPAGTG 1362
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 7e-22
Identities = 97/662 (14%), Positives = 188/662 (28%), Gaps = 191/662 (28%)
Query: 907 FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
FE E + +L + D + +DV D L + I S D
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKD-----A 60
Query: 967 VN-LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK----LQERLKVVPGEDPLSVEAQK 1021
V+ RL W T + +M V E + L +K P
Sbjct: 61 VSGTLRLFW----TLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQP------S 106
Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE------MIGC 1075
T + + +V ++ ++R + + L L P + ++G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLEL-RPAKNVLIDGVLGS 161
Query: 1076 ----VAAQ------------------SIGEPAT-----QMTLNTFHYAGVSAKNVTLGVP 1108
VA ++ + +M + + + +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1109 RLREIINVAKKIKTPSLSVFL--KPGVNS--------TKE--RAKNVQCALEYTT-LRSV 1155
++ I+ + L L KP N + A N+ C + TT + V
Sbjct: 222 NIKLRIHSIQA----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 1156 TEA------TEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE--KISPWL-------L 1200
T+ T + D M +E + Y + +D+ E +P +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1201 RIELNR-----EMMVDK-----KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
R L + DK + S+ + ++ D L+ +F I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPS--------AHI- 387
Query: 1251 NDEAPKGELN---DESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHL 1307
P L+ + + DV + ++ ++ + + T S
Sbjct: 388 ----PTILLSLIWFDVIKSDVMV------VVNKLHKYS------LVEKQPK-ESTISIPS 430
Query: 1308 IEI---IEVLGIEAVRRALLDELRVVISFDG---------SYVNYRHLAILCDTMTYRGH 1355
I + +++ A+ R+++D + +FD Y Y H+ + H
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIG-------H--H 480
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
L I + LD R + + I A +G
Sbjct: 481 LKNIEHPE------------RMTLFRMVFLD---------FRFLEQKIRHDSTAWNASGS 519
Query: 1416 CSLYLND-EMLKNAIELQLPSYMEGL----EFGMTPARSPVSGTPYHD----GMMSP-GY 1465
L + K I P Y + +F + + + Y D +M+
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC-SKYTDLLRIALMAEDEA 578
Query: 1466 LF 1467
+F
Sbjct: 579 IF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 1e-12
Identities = 72/541 (13%), Positives = 154/541 (28%), Gaps = 160/541 (29%)
Query: 481 YNADFDGDEMNMH----VP---QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ--DTL 531
++ DF+ E + +F + ++ +PK I+S + I+ D +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMSKDAV 61
Query: 532 LGCRKITKRDTFIEK-----DVFMNILM-----W-WEDFDGKVPQPTILKPR------PL 574
G ++ T + K F+ ++ + + QP+++ L
Sbjct: 62 SGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 575 WTGKQVF---NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLG 631
+ QVF N+ + R A K +L G G SG K +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV------LG---SG---KTWVA 167
Query: 632 TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL--------------LQNAFSIGIGDT 677
V K +WL LQ +
Sbjct: 168 LDVCLSYKVQ---------CKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 678 IADAKTMETINDTISKAKNNVKNLIKQAQ-DKSL-------EPEPGRTMMESFENKVNQV 729
+ + I I + ++ L+K + L + +F ++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK----AWNAFNLSC-KI 268
Query: 730 LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
L T R K +++ L A T I +D
Sbjct: 269 LLTTRF-------KQVTDF--LSAATT------------------------THIS---LD 292
Query: 790 RTLPHFTKDDYGPESRGFVENSYLRGLTPQEF---------FFHAMGGREGLIDTAVKTS 840
T D E + + YL PQ+ ++ I + T
Sbjct: 293 HHSMTLTPD----EVKSLLLK-YL-DCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATW 344
Query: 841 ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM--DSVWIESQTLDSL--KM 896
+ + + I+ + ++ + ++ + S I + L + +
Sbjct: 345 D--NWKHVNCDKLTTII---ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 897 KKSE----FDKAFRFEMDEENWNPNYMLQEYIDDL--KTIKELRDVFDAEVQKLEADRYQ 950
KS+ +K ++ + E+ + + I + + +L + + + + D Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI---SIPSIYLELKVKLEN--EYALHRSIVDHYN 454
Query: 951 L 951
+
Sbjct: 455 I 455
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 3e-12
Identities = 95/675 (14%), Positives = 182/675 (26%), Gaps = 215/675 (31%)
Query: 306 NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF--SARTVITPDPTINIDQ 363
+ + A + R ++ S+ + + ++ F S P++
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 364 LGVPWSIALNLTY--PETVTPYNIERLKE-------LVEYGPHPP--------PGKTG-A 405
+ + Y + YN+ RL+ L+E P GKT A
Sbjct: 112 ----YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 406 KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
+ YKV+ ++ F L +L + +++
Sbjct: 168 LDVCLS---------------------YKVQCKMDFKIFWL-----NLKNCNSPETVLEM 201
Query: 466 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE-TRAEVLELMMV---PKCIVSPQSNR 521
+ +L + + + D ++ +AE+ L+ C+
Sbjct: 202 LQ----KLLYQIDPNWTSRSDHSS---NIKLRIHSIQAELRRLLKSKPYENCL------- 247
Query: 522 PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW----WEDFDGKVPQPTILKPRPLWTG 577
+V +V W F+ +L R
Sbjct: 248 ----LVLL-----------------NV------QNAKAWNAFNLSC--KILLTTR----F 274
Query: 578 KQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSL 637
KQV + + D+ LT + LL K L L
Sbjct: 275 KQVTDFLSAATTTHISL-----DHHSMTLTPDEVK------SLLL-----KYLDCRPQDL 318
Query: 638 -----------IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
+ +I E + A W + W N +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLAT-------W--DNWKHVNC---------------DK 354
Query: 687 INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES---FENKVN---QVL---------N 731
+ I + N LEP R M + F + +L +
Sbjct: 355 LTTIIESSLNV------------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN--------VEGKRI 783
+ SL E ++ ++ I + V +N V+ I
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTIS-------IPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 784 PFGFVDRTLPHFTKDDYGPESRGF----VENSYLRGLTPQEFF-FHAMGGREGLIDTAVK 838
P F L D Y G +E+ L F F + + + +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTA 513
Query: 839 TSETGYIQRRL--VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK- 895
+ +G I L +K + + D + ++ FL ++ I S+ D L+
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP---KIEENLICSKYTDLLRI 570
Query: 896 --MKKSE--FDKAFR 906
M + E F++A +
Sbjct: 571 ALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 4e-09
Identities = 78/526 (14%), Positives = 152/526 (28%), Gaps = 164/526 (31%)
Query: 96 KTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKK------------ILDACKN 143
+TVL +++ + + DH L+I + + L++ +L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---- 251
Query: 144 KTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLP 203
+V Q+ + C K++
Sbjct: 252 ----------NV--QNAKA-WNAFNLSC------------KILL---------------- 270
Query: 204 EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSDDLT 263
R + +T IS + + L P + ++L+ L P
Sbjct: 271 --TTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKS--LLLKYLDCRP---------- 315
Query: 264 HQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT--YFDNELPGQPRATQRSGRP 321
++L R+ P +S A+ ++ +AT + + +
Sbjct: 316 ----------QDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVN------CDKLTTI 358
Query: 322 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
I+S + L+ E R F +V P I L + W
Sbjct: 359 IESSLNVLEPAEYRKM---------FDRLSVFPPSAHIPTILLSLIWF------DVIKSD 403
Query: 382 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
+ + +L +Y ++ + Q + S + L KV+
Sbjct: 404 VMVV--VNKLHKYS------------LV--EKQPKESTI----SIPSIYLELKVKL---- 439
Query: 442 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM-NMHVPQSFET 500
+ +LH+ SI+ H + + L Y G + N+ P+
Sbjct: 440 ------ENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 501 -RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK----ITKRDTFIEKDVFMNILMW 555
R L+ + + I + G + +TL + I D E+ +N ++
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER--LVNAIL- 549
Query: 556 WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
DF +P+ NLI K +L R A D
Sbjct: 550 --DF---LPKIEE-------------NLICSKYTDLLRIALMAEDE 577
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 3e-13
Identities = 24/140 (17%), Positives = 37/140 (26%), Gaps = 2/140 (1%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+ S + + S + +P+ + P +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
SP + P S SP P + + + SP S S P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 1670 SPGYSPTSPSYSPTSPTYSP 1689
P PS + S T
Sbjct: 120 GVLKVPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 5e-13
Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 2/140 (1%)
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
+ S + + S + +P+ + P +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
SP + P S SP P + + + SP S + P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 1677 SPSYSPTSPTYSPTSPSYNP 1696
P P+ + S + +
Sbjct: 120 GVLKVPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 8e-13
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 6/136 (4%)
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPT-SPSYSPTSPAYSPTSPGYSPTSP 1678
+ T + S TSP+ S +PS P+ P +SP S SP +
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL-SPASPYSPTSPNYSPTSSSYSPT 1737
P S SP P +P+L +S SP+L SP +P S + P +
Sbjct: 66 MGPPFSVISSPMGPHSMSVP--TTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 1738 SPSYSPSSPTYSPSSP 1753
P++ +
Sbjct: 124 VPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 1e-12
Identities = 22/140 (15%), Positives = 35/140 (25%), Gaps = 2/140 (1%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
+ S + + S + +P+ + P +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
SP + P S SP P + + + SP + P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 1684 SPTYSPTSPSYNPQSAKYSP 1703
P PS N S
Sbjct: 120 GVLKVPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 1e-12
Identities = 28/132 (21%), Positives = 39/132 (29%), Gaps = 3/132 (2%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1603
+ T + S TSP+ S +PS P+ P +SP S SP +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMG 67
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
P S SP P + + SP S S P P
Sbjct: 68 PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127
Query: 1664 PAYSPTSPGYSP 1675
P+ + S
Sbjct: 128 PSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 2e-12
Identities = 27/132 (20%), Positives = 37/132 (28%), Gaps = 3/132 (2%)
Query: 1533 YSPTSPTYSPSSPGYSPTSP--AYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1589
+ + S TSP S +PS P+ P +SP S SP +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMG 67
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
P S SP P + SP + S P P
Sbjct: 68 PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127
Query: 1650 PSYSPTSPSYSP 1661
PS + S +
Sbjct: 128 PSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 2e-12
Identities = 25/136 (18%), Positives = 35/136 (25%)
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
+ S SPT G + PG +SP S SP
Sbjct: 4 HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
+ P S SP P + + + SP S + P
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 1625 SPTSPSYSPTSPSYSP 1640
P PS + S +
Sbjct: 124 VPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 2e-12
Identities = 29/127 (22%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Query: 1540 YSPSSPGYSPTSPAYSPTSPS--YSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY 1596
+ T S TSP+ S +PS P+ P +SP S SP +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMG 67
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
P S SP P + SP S S P P
Sbjct: 68 PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAH 127
Query: 1657 PSYSPTS 1663
PS + S
Sbjct: 128 PSGNMAS 134
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 2e-12
Identities = 25/125 (20%), Positives = 35/125 (28%), Gaps = 2/125 (1%)
Query: 1492 PTSSPGYSPS--SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
+S S SP+ G + PG +SP S SP + P
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
S SP P + + + SP S S P P P+
Sbjct: 70 FSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPS 129
Query: 1610 YSPTS 1614
+ S
Sbjct: 130 GNMAS 134
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 3e-12
Identities = 24/136 (17%), Positives = 34/136 (25%)
Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
+ S SPT G + P +SP S SP
Sbjct: 4 HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
+ P S SP P + + + SP S S P
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 1618 SPTSPAYSPTSPSYSP 1633
P P+ + S +
Sbjct: 124 VPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 3e-12
Identities = 29/131 (22%), Positives = 37/131 (28%), Gaps = 1/131 (0%)
Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
D FS V SPT + S + PG +SP S SP +
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSL-HPSLGPGIGSPGQLHSPISTLSSPINGMGP 68
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P S SP P + + SP S S P P P
Sbjct: 69 PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
Query: 1595 SYSPTSPSYSP 1605
S + S +
Sbjct: 129 SGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 3e-12
Identities = 26/136 (19%), Positives = 36/136 (26%), Gaps = 4/136 (2%)
Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
+ T S TSPT S S + P +SP S SP
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL----HPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
+ P S SP P + + SP + + P
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123
Query: 1639 SPTSPSYSPTSPSYSP 1654
P PS + S +
Sbjct: 124 VPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 3e-12
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 1512 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
+ T S TSP + +PS + P +SP S SP
Sbjct: 8 HVDDDDKMFSTQVNSSLTSP--TGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTLSSPI 63
Query: 1572 SPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
+ P S SP P PT+P+ ++ S +SP +S P
Sbjct: 64 NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSS--EDIKPPLGLNGV 121
Query: 1630 SYSPTSPSYSPTSPSYSP 1647
P PS + S +
Sbjct: 122 LKVPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 5e-12
Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 1/129 (0%)
Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT-SPGYSPTSPGYSPTSPGYSPTSP 1538
FS + + + S ++P P+ PG +SP S SP +
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
P S SP P + + + SP S S P P
Sbjct: 66 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 125
Query: 1599 TSPSYSPTS 1607
PS + S
Sbjct: 126 AHPSGNMAS 134
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 6e-12
Identities = 25/143 (17%), Positives = 36/143 (25%), Gaps = 5/143 (3%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+ + S SPT + P +SP S S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
P + P S SP P PT+P+ + S +P S P
Sbjct: 62 PINGMGPPFSVISSPMGPHSMS-----VPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPL 116
Query: 1721 SPTSPNYSPTSSSYSPTSPSYSP 1743
P S + S +
Sbjct: 117 GLNGVLKVPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 8e-12
Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 3/139 (2%)
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+ S + + S + +P+ + PG +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
SP + P S SP +S S P +P +S SP S + S + P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVP-TTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118
Query: 1747 TYSPSSPYNAGGGNPDYSP 1765
P + G ++
Sbjct: 119 NGVLKVPAHPSGNMASFTK 137
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 1e-11
Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 6/144 (4%)
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
+ S + + S + +P+ + P +SP S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTL 59
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
SP + P S SP P S + P+ + +S SP S S + P
Sbjct: 60 SSPINGMGPPFSVISSPMGPH-SMSVPTTP--TLGFSTGSPQLSSPMNPVSSSEDIKPPL 116
Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRL 1714
+ PS + + +
Sbjct: 117 GLN-GVLKVPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 2e-11
Identities = 26/143 (18%), Positives = 38/143 (26%), Gaps = 5/143 (3%)
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
+ + S SPT + P +SP S S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
P + P S SP P PT+PT ++ S S S + P
Sbjct: 62 PINGMGPPFSVISSPMGP-----HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPL 116
Query: 1714 LSPASPYSPTSPNYSPTSSSYSP 1736
P P+ + S +
Sbjct: 117 GLNGVLKVPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 2e-11
Identities = 28/139 (20%), Positives = 43/139 (30%), Gaps = 6/139 (4%)
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
+ T + S TSP + +P+ + P +SP S S
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSP--TGRGSMAAPSL--HPSLGPGIGSPGQLHSPISTLSS 61
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
P + P S SP P S +PT + + SP +P + + K L
Sbjct: 62 PINGMGPPFSVISSPMGP--HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119
Query: 1707 YSPSSPRLSPASPYSPTSP 1725
P + S T
Sbjct: 120 GVLKVPAHPSGNMASFTKH 138
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 7e-11
Identities = 23/134 (17%), Positives = 36/134 (26%), Gaps = 1/134 (0%)
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
+ S S SPT G + P ++P S S
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 1703 PSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGGGNP 1761
P P +S S +PT + + SP +P S G
Sbjct: 62 PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121
Query: 1762 DYSPSSPQYSPSAG 1775
P+ P + ++
Sbjct: 122 LKVPAHPSGNMASF 135
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 7e-11
Identities = 27/138 (19%), Positives = 39/138 (28%), Gaps = 3/138 (2%)
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
+ S S SPT + P +SP S +
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 1696 PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
P + P +S S + P S PT+P ++ S +SP SS
Sbjct: 62 PINGMGPP---FSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118
Query: 1756 AGGGNPDYSPSSPQYSPS 1773
G PS S +
Sbjct: 119 NGVLKVPAHPSGNMASFT 136
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 9e-11
Identities = 36/146 (24%), Positives = 45/146 (30%), Gaps = 9/146 (6%)
Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
+ T S TSP+ + + +PSL S SP +SP S SP +
Sbjct: 8 HVDDDDKMFSTQVNSSLTSPT--GRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65
Query: 1733 SYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT 1792
P S SP P S S P G SP SP S S P +
Sbjct: 66 MGPPFSVISSPMGPH-SMSVPTTPTLGFSTGSP--QLSSPMNPVSSSEDIKPPLGLNGVL 122
Query: 1793 PQTNRDDSTTKDDKNTK----GDKSS 1814
GD+SS
Sbjct: 123 KVPAHPSGNMASFTKHICAICGDRSS 148
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 5e-10
Identities = 27/131 (20%), Positives = 37/131 (28%), Gaps = 3/131 (2%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 1527
+ + V + SP G +P+ P PG +SP S SP +
Sbjct: 12 DDKMFSTQVNSSLTSPTGRGSMAAPSLHP---SLGPGIGSPGQLHSPISTLSSPINGMGP 68
Query: 1528 PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
P S SP P + SP S S P P P
Sbjct: 69 PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHP 128
Query: 1588 SYSPTSPSYSP 1598
S + S +
Sbjct: 129 SGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 1e-09
Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 10/138 (7%)
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP----SSP 1712
+ T S TSP+ +P+ SP +SP SSP
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPT--GRGSMAAPSLHPSLGPGI-GSPGQLHSPISTLSSP 62
Query: 1713 RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
P+S S P S S PT+P+ S+ + SSP N + D P P
Sbjct: 63 INGMGPPFSVISSPMGPHSMS-VPTTPTLGFSTGSPQLSSPMNPVSSSEDIKP--PLGLN 119
Query: 1773 SAGYSPSAPGYSPSSTSQ 1790
P+ P + +S ++
Sbjct: 120 GVLKVPAHPSGNMASFTK 137
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 7e-07
Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 13/150 (8%)
Query: 1437 MEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
M + T + + SP S +P P +G SP
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSM---AAPS----LHPSLGPGIGSP--GQ 51
Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTSPG--YSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
+SP S SP + P S SP P PT+P ++ + SSP +S
Sbjct: 52 LHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSS-- 109
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1584
P P PS + S +
Sbjct: 110 EDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139
|
| >3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 1706 AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS-PSYSPS--------SPTYSPSSPYNA 1756
+ ++ + + + + S +P+ PS P SP + SSP N
Sbjct: 6 HHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 65
Query: 1757 GGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
G P +S S P + P+ P S+ S S+++D K G
Sbjct: 66 MG--PPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 56.6 bits (135), Expect = 8e-09
Identities = 22/155 (14%), Positives = 34/155 (21%), Gaps = 2/155 (1%)
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
SP +P P+ T + P SPS P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
+ T + P S + P + + P + S + S P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
+ G P Y
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTAT 154
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 56.2 bits (134), Expect = 1e-08
Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 3/149 (2%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
SPA +P P+ T + P SPS P P P T
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP---PVPPPPKHTPSKEVKQEQI 58
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
S + P +P+ P+ + + + + + + S S +
Sbjct: 59 LSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETF 118
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
+ T S P + Q+
Sbjct: 119 PATVNGTVEGGSGAGRLDLPPGFMFKVQA 147
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 55.1 bits (131), Expect = 3e-08
Identities = 20/144 (13%), Positives = 33/144 (22%), Gaps = 2/144 (1%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
SP+ +P P+ T + P SPS P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
+ T + P S + P + + P A S + P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAY 1707
+ P +
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMF 143
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 55.1 bits (131), Expect = 3e-08
Identities = 24/157 (15%), Positives = 34/157 (21%), Gaps = 2/157 (1%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
SP +P P T A P SPS P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
+ T + P S + P + A P + S + S P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 53.5 bits (127), Expect = 9e-08
Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 3/143 (2%)
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
SP+ +P P+ T A P SP+ P P P T
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP---PVPPPPKHTPSKEVKQEQI 58
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
S ++ P +P+ PA + G + + T + + S + +
Sbjct: 59 LSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETF 118
Query: 1705 LAYSPSSPRLSPASPYSPTSPNY 1727
A + + P +
Sbjct: 119 PATVNGTVEGGSGAGRLDLPPGF 141
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 53.2 bits (126), Expect = 1e-07
Identities = 22/157 (14%), Positives = 33/157 (21%), Gaps = 2/157 (1%)
Query: 1522 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
SP +P P + P SP+ P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
+ T + P S + P + A P A S + S P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 52.8 bits (125), Expect = 2e-07
Identities = 21/157 (13%), Positives = 33/157 (21%), Gaps = 2/157 (1%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
SP +P P T P SP+ P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
+ T + P S + P + + P A S + + P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 52.8 bits (125), Expect = 2e-07
Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 8/164 (4%)
Query: 1599 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
SP+ +P PA T A P SPS P P P T
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP---PVPPPPKHTPSKEVKQEQI 58
Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
S + P +P+ P+ + + + + ++ PA
Sbjct: 59 LSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAAS-----EAASSSLPAV 113
Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
+ T S P + + ++ + D
Sbjct: 114 VVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTD 157
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 51.6 bits (122), Expect = 5e-07
Identities = 20/157 (12%), Positives = 32/157 (20%), Gaps = 2/157 (1%)
Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
SP +P P T P SP P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
+ T + P S + P + + P + S + + P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 50.5 bits (119), Expect = 1e-06
Identities = 21/157 (13%), Positives = 32/157 (20%), Gaps = 2/157 (1%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
SP +P P T P SP P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
+ T + P S + P + + P + S + S P +
Sbjct: 62 FEDTFVPEISVTTPSQPAEA--SEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFP 119
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
+ P Y+ T
Sbjct: 120 ATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDT 156
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 49.7 bits (117), Expect = 2e-06
Identities = 20/147 (13%), Positives = 35/147 (23%), Gaps = 1/147 (0%)
Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
SP+ +P P+ T + P SP+ P P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
+ S + A P + P ++ S + S P+ + +
Sbjct: 62 FEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPAT 121
Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYSPSA 1780
N P + A
Sbjct: 122 VNGTVEGGS-GAGRLDLPPGFMFKVQA 147
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 49.3 bits (116), Expect = 3e-06
Identities = 20/144 (13%), Positives = 33/144 (22%), Gaps = 4/144 (2%)
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
SPA +P P+ T + + SP+ P P +P
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGA----TLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQ 57
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
S S S + P P + + +S
Sbjct: 58 ILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVET 117
Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDY 1763
+ + T S P +
Sbjct: 118 FPATVNGTVEGGSGAGRLDLPPGF 141
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 48.9 bits (115), Expect = 4e-06
Identities = 24/160 (15%), Positives = 43/160 (26%), Gaps = 1/160 (0%)
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
SP+ +P P T + P SP+ P P K++PS
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPV-PPPPKHTPSKEVKQEQILS 60
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
+ P +P+ + + + + A P+ + A
Sbjct: 61 LFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPA 120
Query: 1775 GYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
+ + G S + P D T D+
Sbjct: 121 TVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ 160
|
| >1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213 | Back alignment and structure |
|---|
Score = 47.0 bits (110), Expect = 2e-05
Identities = 20/144 (13%), Positives = 35/144 (24%), Gaps = 4/144 (2%)
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
SP+ +P P+ T + P SPS P P +PS
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP----PVPPPPKHTPSKEVKQEQ 57
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
+ + +S P + +S + +S
Sbjct: 58 ILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVET 117
Query: 1747 TYSPSSPYNAGGGNPDYSPSSPQY 1770
+ + GG P +
Sbjct: 118 FPATVNGTVEGGSGAGRLDLPPGF 141
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 9e-08
Identities = 18/134 (13%), Positives = 31/134 (23%), Gaps = 7/134 (5%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPAYSPTSPAYSP 1619
+S + S P S S + + + P P P + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTS 1677
+ + P+ T+ P + + PA PG + P
Sbjct: 63 DTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1678 PSYSPTSPTYSPTS 1691
S
Sbjct: 122 EPDPVRVEEVSRRI 135
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 1e-07
Identities = 16/134 (11%), Positives = 31/134 (23%), Gaps = 7/134 (5%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSP 1584
+S + S P S + + + + P P P + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS--YSPTS 1642
+ + + P+ T+ P A + P+ P + P
Sbjct: 63 DTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1643 PSYSPTSPSYSPTS 1656
S
Sbjct: 122 EPDPVRVEEVSRRI 135
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 2e-07
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 3/126 (2%)
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY-SPTSPSYSPTSPSYSPTSPSYSPTSP 1650
+S + S P S + + + + + P + P+ P + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
PT PG + +P+ S P + + P L + P
Sbjct: 63 DTVTGDSVLQRILRG--PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120
Query: 1711 SPRLSP 1716
Sbjct: 121 PEPDPV 126
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 2e-07
Identities = 18/134 (13%), Positives = 31/134 (23%), Gaps = 7/134 (5%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS----PTSPGYSPTSPTYSPSSPGYSP 1549
SS + S G P S + + + P P P + G P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTS 1607
+ + P+ T+ P + + P+ P + P
Sbjct: 63 DTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1608 PAYSPTSPAYSPTS 1621
S
Sbjct: 122 EPDPVRVEEVSRRI 135
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 3e-07
Identities = 16/137 (11%), Positives = 30/137 (21%), Gaps = 6/137 (4%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+S + S P S S + + + P P P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAAL---HPPVTVPDPAPPPPPAPAAG 59
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA--YS 1667
P + + P+ T+ P + + P+ P +
Sbjct: 60 NPPDTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 1668 PTSPGYSPTSPSYSPTS 1684
P S
Sbjct: 119 PVPEPDPVRVEEVSRRI 135
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 5e-07
Identities = 19/137 (13%), Positives = 32/137 (23%), Gaps = 6/137 (4%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
SS + S G P S + + + + P P P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAAL---HPPVTVPDPAPPPPPAPAAG 59
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA--YS 1625
P + + + P+ T+ P A + PA P +
Sbjct: 60 NPPDTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 1626 PTSPSYSPTSPSYSPTS 1642
P S
Sbjct: 119 PVPEPDPVRVEEVSRRI 135
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 8e-07
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 6/128 (4%)
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
+S + S P S S + + + A P P P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDF---LAALHPPVTVPDPAPPPPPAPAAG 59
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS--YN 1695
P + + + P+ T+ G P + + P P ++
Sbjct: 60 NPPDTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118
Query: 1696 PQSAKYSP 1703
P
Sbjct: 119 PVPEPDPV 126
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 1e-06
Identities = 19/134 (14%), Positives = 33/134 (24%), Gaps = 9/134 (6%)
Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPAYSP 1668
+S + S P S S + + + P P P + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1669 TSPGYSPTSPSYSPTSPTYSPTS---PSYNPQSAKYSPSLAYSPSSP-RLSPASPYSPTS 1724
+ + PT T+ P+ + A +P + R P + P
Sbjct: 63 DTVT-GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121
Query: 1725 PNYSPTSSSYSPTS 1738
S
Sbjct: 122 EPDPVRVEEVSRRI 135
|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 6e-05
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 9/125 (7%)
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPGYSPTSPSYSPTSP 1685
+S + S P S S + + + + P T P +P P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPP--VTVPDPAPPPPPAPA--- 57
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
+P + P+ P + +P P + + +P + +
Sbjct: 58 ---AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPG 114
Query: 1746 PTYSP 1750
+ P
Sbjct: 115 LYHHP 119
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 | Back alignment and structure |
|---|
Score = 56.1 bits (134), Expect = 1e-07
Identities = 27/198 (13%), Positives = 46/198 (23%), Gaps = 13/198 (6%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
S + + + + T + + PG + S + S P+ P +
Sbjct: 3 SGKKAAAAAAAAAAAATGTEAGPGTAGGS-----ENGSEVAAQPAGLSGPAEVGPGAVGE 57
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
P + SP P S A P + + +P TS
Sbjct: 58 RTPRKKEPPRA------SPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTS 111
Query: 1643 PSYSP-TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
S + YS P P +P N +
Sbjct: 112 RRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEE-NESEPEE 170
Query: 1702 SPSLAYSPSSPRLSPASP 1719
+ + RL
Sbjct: 171 PSGVEGAAFQSRLPHDRM 188
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 | Back alignment and structure |
|---|
Score = 55.8 bits (133), Expect = 1e-07
Identities = 27/185 (14%), Positives = 40/185 (21%), Gaps = 12/185 (6%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
A + T + P + G S + G S + +P
Sbjct: 15 AAAATGTEA--------GPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPP 66
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTS 1607
SP P S + P + + +P TS S
Sbjct: 67 RASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDES 126
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPA 1665
A YS P P +P + P + P
Sbjct: 127 LANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENE-SEPEEPSGVEGAAFQSRLPH 185
Query: 1666 YSPTS 1670
TS
Sbjct: 186 DRMTS 190
|
| >3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 1e-07
Identities = 23/155 (14%), Positives = 37/155 (23%), Gaps = 11/155 (7%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
S + +S + S S + Y + SP S P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 1616 --AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---------SP 1664
Y S S P + SP S SY +SP+ P
Sbjct: 66 LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
+ + + S ++ + A
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMA 160
|
| >3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 5/155 (3%)
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
S + +S + S S + Y + SP S + P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
+ + P+ S Y+ SP S SY +SP P
Sbjct: 66 LQGYQTYGHFPSRAIKSEYPDPYTS-----SPESIMGYSYMDSYQTSSPASIPHLILELL 120
Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
+ P + + + S +
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155
|
| >3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 22/156 (14%), Positives = 34/156 (21%), Gaps = 7/156 (4%)
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
S + +S + S + Y S SP S P
Sbjct: 8 SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
+ + P+ S P + SP S SY +SPA P
Sbjct: 68 GYQTYGHFPSRAIKSEY-----PDPYTSSPESIMGYSYMDSYQTSSPASIP--HLILELL 120
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
+ + S +
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLM 156
|
| >3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 23/149 (15%), Positives = 33/149 (22%), Gaps = 5/149 (3%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P+ S +S G A PT SP S + +
Sbjct: 8 SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY-----SPTS 1635
Y S S P + SP S +Y +SPA P
Sbjct: 68 GYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEP 127
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
+ + S +
Sbjct: 128 QVQAKIMAYLQQEQANRSKHEKLSTFGLM 156
|
| >3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 9e-06
Identities = 23/111 (20%), Positives = 32/111 (28%), Gaps = 3/111 (2%)
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
S + +S + S S + Y + SP S T P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
Q+ + PS A P SP S SY +SP+ P
Sbjct: 66 LQGYQTYGHFPSRAIKSEYP---DPYTSSPESIMGYSYMDSYQTSSPASIP 113
|
| >3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 22/154 (14%), Positives = 32/154 (20%), Gaps = 4/154 (2%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
S + SS + S + Y + SP S P
Sbjct: 5 EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64
Query: 1552 P--AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
Y S S P + SP S SY +SP+ P
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIP--HLILELLKC 122
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
+ + S +
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLM 156
|
| >3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 3/107 (2%)
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
S + +S + S + Y + +P S P +
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
S + P + SP S +Y SSP
Sbjct: 66 LQGYQTYGHFPSRAIKSE---YPDPYTSSPESIMGYSYMDSYQTSSP 109
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-05
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
P +P SP +PG + + + T +P + G +PT P + + +P P
Sbjct: 2 PAAPT-SPGTPGVAAATQAANGGPATPAPPALGAAPTGDP----KPKKNKKPKNPTPPRP 56
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+ + + + T ++ P
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 2e-05
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P +PT SP +PG + + A + + +P + +PT P + + +P P
Sbjct: 2 PAAPT-SPGTPGVAAATQAANGGPATPAPPALGAAPTGDP----KPKKNKKPKNPTPPRP 56
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
+ + + + T + P
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
SP +PG + ++ + +P P G P +P +P PA +
Sbjct: 7 SPGTPGVAAATQAANGGPA--TPAPPALGAAPTGDPKPKKNKKPKNP--TPPRPAGDNAT 62
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
+ + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+PTSP + + + + +P +P+ P +P P+ +
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP-TPPRPAGDNAT 62
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
A + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-04
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
P +P SP +P + + + + + P P+ + P + + +P P
Sbjct: 2 PAAPT-SPGTPGVAAATQAANGGPAT--PAPPA--LGAAPTGDPKPKKNKKPKNPTPPRP 56
Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
A + A + T ++ P
Sbjct: 57 AGDNATVAAGHATLREHLRDIKAENTDANFYVCPPP 92
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-04
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
+PTSPG + + ++ G T + + P + + +P P+ +
Sbjct: 4 APTSPGTPGVAAA-TQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
+ + T + P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 6e-04
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
+PTSP P A + + T + + P + + +P P+ +
Sbjct: 4 APTSPGT-PGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
A + T + P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 7e-04
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 2/113 (1%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
+PTSP + + + + +P +P+ P P G + T
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63
Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS--PYSPTSPNYS 1728
+ T + + N + Y + + P P NY+
Sbjct: 64 AAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYT 116
|
| >3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 8e-04
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
+PTSP + + + + +P +P+ P +P PA +
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNP-TPPRPAGDNAT 62
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
A + T ++ P
Sbjct: 63 VAAGHATLREHLRDIKAENTDANFYVCPPP 92
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPS 1574
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1561 YSPTSPSYSPTSPSYSPTSPS 1581
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1568 YSPTSPSYSPTSPSYSPTSPS 1588
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1575 YSPTSPSYSPTSPSYSPTSPS 1595
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1582 YSPTSPSYSPTSPSYSPTSPS 1602
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPS 1644
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1631 YSPTSPSYSPTSPSYSPTSPS 1651
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 1638 YSPTSPSYSPTSPSYSPTSPS 1658
YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1673 YSPTSPSYSPTSPTYSPTSPS 1693
YSPTSPSYSPTSP+YSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1589 YSPTSPSYSPTSPSYSPTSPA 1609
YSPTSPSYSPTSPSYSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1645 YSPTSPSYSPTSPSYSPTSPA 1665
YSPTSPSYSPTSPSYSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPS 1567
YSPTSP+YSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-05
Identities = 20/21 (95%), Positives = 21/21 (100%)
Query: 1617 YSPTSPAYSPTSPSYSPTSPS 1637
YSPTSP+YSPTSPSYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Query: 1596 YSPTSPSYSPTSPAYSPTSPA 1616
YSPTSPSYSPTSP+YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Query: 1610 YSPTSPAYSPTSPAYSPTSPS 1630
YSPTSP+YSPTSP+YSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1659 YSPTSPAYSPTSPGYSPTSPS 1679
YSPTSP+YSPTSP YSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1666 YSPTSPGYSPTSPSYSPTSPT 1686
YSPTSP YSPTSPSYSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-05
Identities = 18/21 (85%), Positives = 21/21 (100%)
Query: 1603 YSPTSPAYSPTSPAYSPTSPA 1623
YSPTSP+YSPTSP+YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-05
Identities = 19/20 (95%), Positives = 20/20 (100%)
Query: 1652 YSPTSPSYSPTSPAYSPTSP 1671
YSPTSPSYSPTSP+YSPTSP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 1e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 1519 YSPTSPGYSPTSPGYSPTSPT 1539
YSPTSP YSPTSP YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 2e-04
Identities = 17/21 (80%), Positives = 20/21 (95%)
Query: 1533 YSPTSPTYSPSSPGYSPTSPA 1553
YSPTSP+YSP+SP YSPTSP+
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 2e-04
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 1512 YSPTSPGYSPTSPGYSPTSP 1531
YSPTSP YSPTSP YSPTSP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 2e-04
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 1540 YSPSSPGYSPTSPAYSPTSPS 1560
YSP+SP YSPTSP+YSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 4e-04
Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1720 YSPTSPNYSPTSSSYSPTSPS 1740
YSPTSP+YSPTS SYSPTSPS
Sbjct: 1 YSPTSPSYSPTSPSYSPTSPS 21
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 4e-04
Identities = 17/20 (85%), Positives = 19/20 (95%)
Query: 1526 YSPTSPGYSPTSPTYSPSSP 1545
YSPTSP YSPTSP+YSP+SP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 4e-04
Identities = 17/20 (85%), Positives = 20/20 (100%)
Query: 1734 YSPTSPSYSPSSPTYSPSSP 1753
YSPTSPSYSP+SP+YSP+SP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
|
| >1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} Length = 26 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 5e-04
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 1505 YSPSSPGYSPTSPGYSPTSP 1524
YSP+SP YSPTSP YSPTSP
Sbjct: 1 YSPTSPSYSPTSPSYSPTSP 20
|
| >1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 21/162 (12%), Positives = 29/162 (17%), Gaps = 3/162 (1%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
S P PG P G P G P +
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP--HGGGWGQ-PHGGGWGQPH 58
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
P P+ P + + + + A Y
Sbjct: 59 GGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYM 118
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
S P S Y + P Y P +
Sbjct: 119 LGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN 160
|
| >1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 22/160 (13%), Positives = 30/160 (18%), Gaps = 8/160 (5%)
Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY----SPTSPSYSPT 1564
S G++ Y PG P G P P +
Sbjct: 2 SKKRPKPGGGWNTGGSRY----PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQP 57
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
P P+ P + A + + A Y
Sbjct: 58 HGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGY 117
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
S P S Y + P Y P
Sbjct: 118 MLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQ 157
|
| >1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 22/157 (14%), Positives = 32/157 (20%), Gaps = 3/157 (1%)
Query: 1483 PYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
GG + PG P G P G P G+
Sbjct: 7 KPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP--HGGGWGQ-PHGGGWGQPHGGGWG 63
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
G P P+ P + + + + + Y S
Sbjct: 64 QPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAM 123
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
P S Y + P Y P +
Sbjct: 124 SRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN 160
|
| >1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 22/167 (13%), Positives = 33/167 (19%), Gaps = 7/167 (4%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
G P G++ Y PG P G P P G
Sbjct: 1 GSKKRPKPGGGWNTGGSRY----PGQGSPGGNRYPPQGGGGWGQPHGGGWGQ---PHGGG 53
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
+ P P+ P + + + + +
Sbjct: 54 WGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGG 113
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
Y S P S Y + P Y P +
Sbjct: 114 LGGYMLGSAMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN 160
|
| >1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 19/159 (11%), Positives = 29/159 (18%), Gaps = 4/159 (2%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPAY 1610
S P + P + P P P +
Sbjct: 2 SKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGG 61
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P P+ P + + + + + Y S
Sbjct: 62 WGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGS 121
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP 1709
P S Y + P Y P YS
Sbjct: 122 AMSRPLIHFGSDYEDRYYRENMHRYPNQVYYRPVDQYSN 160
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 512 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 38/290 (13%), Positives = 65/290 (22%), Gaps = 25/290 (8%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSP---SSPGYSPTSPAYSPTSPSYSPTSPSYSP 1570
S + + S P + GY PTS + + S ++
Sbjct: 126 HVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPE 185
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
S S ++P Y + S S P SP +S +
Sbjct: 186 IQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP 245
Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
S + +P + + + T S T P
Sbjct: 246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQP------LGV 299
Query: 1688 SPTSPSYNPQSAKYSPSLA-----YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
+P+ + + L+ + S S
Sbjct: 300 YLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNG-SQS 358
Query: 1743 PSSPTYSPSSPYNAGG------GNPDY-SPSSPQYSPSAGYSPSAPGYSP 1785
S P S +NAG +P A +P +
Sbjct: 359 QHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNL 408
|
| >3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 3e-04
Identities = 22/122 (18%), Positives = 28/122 (22%), Gaps = 4/122 (3%)
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
P P + P T PS A +PG S S
Sbjct: 42 EPQVPDFRHLKAEVDAEKPG--ATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPD 99
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRL--SPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
+P S+ P S + P A SP + S P
Sbjct: 100 REPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEP 159
Query: 1743 PS 1744
P
Sbjct: 160 PG 161
|
| >3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-04
Identities = 19/122 (15%), Positives = 25/122 (20%), Gaps = 2/122 (1%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
P P + P T PS + +P S S
Sbjct: 42 EPQVPDFRHLKAEVDAEKPG--ATDRKGGVGMPSRDRNIGAPGQDTPGVSLHPLSLDSPD 99
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+P S P S S + + SP S P
Sbjct: 100 REPGADAPLELGDSSPQGPMSLESLAPPESTDEGAETESPEPGDEGEPGRSGLELEPEEP 159
Query: 1661 PT 1662
P
Sbjct: 160 PG 161
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1815 | ||||
| d1twfa_ | 1449 | e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces c | 0.0 | |
| d1smyd_ | 1504 | e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus t | 1e-179 | |
| d1smyd_ | 1504 | e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus t | 4e-66 | |
| d1smyd_ | 1504 | e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus t | 5e-04 |
| >d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 1449 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta-prime domain: RBP1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 1446 bits (3743), Expect = 0.0
Identities = 779/1469 (53%), Positives = 1025/1469 (69%), Gaps = 72/1469 (4%)
Query: 6 PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
YS A + V+ VQFG+ SP+E+R +SV +I ET + + + K GGL+DPRLG+IDR
Sbjct: 4 QYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRN 63
Query: 64 MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
+KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE + +Q
Sbjct: 64 LKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQ 123
Query: 124 ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
AL I++ K R I CK K CE DVP +D L +GGCG QP + +G+
Sbjct: 124 ALAIKDSKKRFAAIWTLCKTKMVCET----DVPSEDDPTQLVS-RGGCGNTQPTIRKDGL 178
Query: 184 KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
K++ +K R D E + L+ E +L + K IS +D LG N ++RP+W
Sbjct: 179 KLVGSWKKDRATGDADE------PELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEW 232
Query: 244 MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
MIL LP+PPPPVRPS DDLT +LA I++ N +L E NGAP H I E
Sbjct: 233 MILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAE 292
Query: 294 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 293 SLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVI 352
Query: 354 TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
+ DP + +DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG KY+IRD G
Sbjct: 353 SGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGA---KYVIRDSG 409
Query: 414 QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRL
Sbjct: 410 DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRL 469
Query: 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
NLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL G
Sbjct: 470 NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 529
Query: 534 CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
RK+T RDTFIE D +N+L W D+DG +P P I+KP+PLW+GKQ+ ++ IP I+L R
Sbjct: 530 IRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR 589
Query: 594 TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
D +L+ D + I G+++ G + KKT+G+S G LIHV+ E GP K
Sbjct: 590 F-----DEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKL 644
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
G+ Q +VN+WLL N FS GIGDTIAD TM I +TI++AK V ++ K+AQ L +
Sbjct: 645 FGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAK 704
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
G T+ ESFE+ V + LN ARD+AG A+ +L + NN+K MV AGSKGSFINI+QM+ACV
Sbjct: 705 HGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACV 764
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 765 GQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI 824
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
DTAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+ IE Q+LD+
Sbjct: 825 DTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDT 884
Query: 894 LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
+ + F+K +R ++ + + L E ++ +L+ + D E ++L DR +
Sbjct: 885 IGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDR-KFLR 943
Query: 954 EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
E+ G+++WPLPVN++R+I NAQ+TF +D +PSD+ ++V V LQE L V+ G++
Sbjct: 944 EVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKN 1003
Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
+ AQ++A F LLRS A++RVL+E+RLT++AF+WV+ IE++FL+S+V PGEM+
Sbjct: 1004 EIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMV 1063
Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+PG
Sbjct: 1064 GVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGH 1123
Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
+ +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+I ED E ++ ++ + DE+
Sbjct: 1124 AADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQS 1183
Query: 1194 --KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
+ SPWLLR+EL+R M DK L+M V E+I Q F +DL I+++DN +KLI+R R++
Sbjct: 1184 FDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVR 1243
Query: 1252 DEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------------------- 1284
PK + AE+D LKKIE+ ML + LR
Sbjct: 1244 ---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKE 1300
Query: 1285 --------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
GVNL VM +D R +N I+I+EVLGIEA R AL E+ VI+ DGS
Sbjct: 1301 PEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGS 1360
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A AE D
Sbjct: 1361 YVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDC 1420
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
RGV+EN++LGQ+APIGTG + +++E L
Sbjct: 1421 RGVSENVILGQMAPIGTGAFDVMIDEESL 1449
|
| >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Length = 1504 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta-prime domain: RNA-polymerase beta-prime species: Thermus thermophilus [TaxId: 274]
Score = 581 bits (1499), Expect = e-179
Identities = 181/854 (21%), Positives = 315/854 (36%), Gaps = 125/854 (14%)
Query: 184 KMIAEYKAQRKKN-DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
+M AE Q K D + E +E + + R KR+ + RP+
Sbjct: 454 RMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLE----VVRAFLDSGNRPE 509
Query: 243 WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
WMIL+ +P+ PP +RP DL +I N L++ GAP II
Sbjct: 510 WMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNE 569
Query: 293 AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
++LQ + DN G P S RP++S+ L K+GR R NL+GKRVD+S R+V
Sbjct: 570 KRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSV 629
Query: 353 ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
I P + + Q G+P +AL L P + + + V+
Sbjct: 630 IVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAAR---------------- 673
Query: 413 GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
R L++ D E+ + + G VL NR P+LH++ I + ++ + +
Sbjct: 674 ------RMLERQRDIKDEV-WDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQ 726
Query: 473 LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
L+ V +NADFDGD+M +HVP S +AE M+ ++SP S P+ +D +L
Sbjct: 727 LHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIIL 786
Query: 533 GCRKITK-----RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
G IT+ + +E L E + + P + R G+ + P
Sbjct: 787 GLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPD 846
Query: 588 QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLC-----------------KKTL 630
+ L D + + G +L +
Sbjct: 847 EALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQE 906
Query: 631 GTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDT 690
S L++ + +G + + L ++ + + +IGI D + E
Sbjct: 907 KNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIP----EEKKQY 962
Query: 691 ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSES-- 748
+ +A + + + + G +++ Q+ ++ + K+ E+
Sbjct: 963 LEEADRKLLQIEQAYEM-------GFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYP 1015
Query: 749 -NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 807
N L M +G++G+ I Q+ + G
Sbjct: 1016 FNPLYVMAQSGARGNPQQIRQLCGLR--------------------GLMQKPSGETFEVP 1055
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 867
V +S+ GLT E+F + G R+G DTA++T+++GY+ R+LV +I+V+ +
Sbjct: 1056 VRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTN 1115
Query: 868 LGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDL 927
V F E SL+++K +A + +L ++ L
Sbjct: 1116 YISVPLFQPDEVT-----------RSLRLRKRADIEAGLY---------GRVLAREVEVL 1155
Query: 928 KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL--PVNLKRLIWNAQKTFKVDPR 985
E D + L P+ P+ + QK + D
Sbjct: 1156 GVRLEEGRYLS------MDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLS 1209
Query: 986 RPSDMHPMEVVEAV 999
P+ + EAV
Sbjct: 1210 M---ARPVSIGEAV 1220
|
| >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Length = 1504 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta-prime domain: RNA-polymerase beta-prime species: Thermus thermophilus [TaxId: 274]
Score = 245 bits (627), Expect = 4e-66
Identities = 86/434 (19%), Positives = 171/434 (39%), Gaps = 97/434 (22%)
Query: 993 MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
VE + E + + +D + A + +RS + + + ++ +
Sbjct: 1149 AREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQ---TRYGVCQKCYG 1205
Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS-AKNVTLGVPRLR 1111
+ + V+ GE +G VAAQSIGEP TQ+T+ TFH GV+ A ++T G+PR+
Sbjct: 1206 Y------DLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVI 1259
Query: 1112 EIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTI 1171
E+ A++ K ++ + GV +E + + + S + E Y +
Sbjct: 1260 ELFE-ARRPKAKAVISEID-GVVRIEETEEKL-----SVFVESEGFSKE--YKLPKEARL 1310
Query: 1172 IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDL 1231
+ +D ++V++ + I P ++ L AV + +E
Sbjct: 1311 LVKDGDYVEAGQPLTRGAIDPHQL----LEA-----------KGPEAVERYLVEEIQK-- 1353
Query: 1232 TCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAV 1291
+ R + + +L+D K IE ++ +M ++ V +
Sbjct: 1354 ------------VYRAQGV-------KLHD---------KHIE-IVVRQM-MKYVEV--- 1380
Query: 1292 MCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMT 1351
D R +++E +EA+ L+ E + +
Sbjct: 1381 ---TDPGDSRLLEG---QVLEKWDVEALNERLIAEGK-------------------TPVA 1415
Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPI 1411
++ LM +T+ ++ + SF+ T +L +AA+ + D L G+ EN++LG+L P
Sbjct: 1416 WKPLLMGVTKSALSTK--SWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPA 1473
Query: 1412 GTGDCSLYLNDEML 1425
GTG +++
Sbjct: 1474 GTG-SDFVRFTQVV 1486
|
| >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Length = 1504 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta-prime domain: RNA-polymerase beta-prime species: Thermus thermophilus [TaxId: 274]
Score = 42.5 bits (99), Expect = 5e-04
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 40/119 (33%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGET----TERGKPKPGGLSDPRL-GTI-D------ 61
+VR V+ + SP++IR S ++E ET T KP+ GL D R+ G I D
Sbjct: 3 EVRKVRIALASPEKIRSWSYGEVEKPETINYRT--LKPERDGLFDERIFGPIKDYECACG 60
Query: 62 --RKMK-----CETCTANMAECPG-----------HFGHLELAKPMFHIGFMKTVLSIM 102
++ + CE C G GH+ELA P HI F+K V S +
Sbjct: 61 KYKRQRFEGKVCERC--------GVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKI 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1815 | |||
| d1smyd_ | 1504 | RNA-polymerase beta-prime {Thermus thermophilus [T | 100.0 | |
| d1twfa_ | 1449 | RBP1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1muka_ | 1264 | Reovirus polymerase lambda3 {Reovirus [TaxId: 1089 | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1twfb_ | 1207 | RBP2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1urja_ | 1122 | Infected cell protein 8, ICP8 {Herpes simplex viru | 100.0 | |
| d1smyc_ | 1119 | RNA-polymerase beta {Thermus thermophilus [TaxId: | 100.0 | |
| d1y5ia2 | 1074 | Respiratory nitrate reductase 1 alpha chain {Esche | 100.0 | |
| d1uf2a_ | 967 | RDV p3 {Rice dwarf virus [TaxId: 10991]} | 100.0 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 100.0 | |
| d1jqoa_ | 936 | Phosphoenolpyruvate carboxylase {Escherichia coli | 100.0 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d1mswd_ | 882 | T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760] | 100.0 | |
| d1jqna_ | 880 | Phosphoenolpyruvate carboxylase {Escherichia coli | 100.0 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ygpa_ | 876 | Glycogen phosphorylase {Baker's yeast (Saccharomyc | 100.0 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 100.0 | |
| d2btva_ | 845 | BTV vp3 {Bluetongue virus, strain 1 [TaxId: 40051] | 100.0 | |
| d2gj4a1 | 824 | Glycogen phosphorylase {Rabbit (Oryctolagus cunicu | 100.0 | |
| d1kqfa2 | 817 | Formate dehydrogenase N, alpha subunit {Escherichi | 100.0 | |
| d1h0ha2 | 812 | Tungsten containing formate dehydrogenase, large s | 100.0 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 100.0 | |
| d1l5wa_ | 796 | Maltodextrin phosphorylase (MALP) {Escherichia col | 100.0 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 100.0 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 100.0 | |
| d1r9da_ | 786 | Glycerol dehydratase DhaB1 {Clostridium butyricum | 100.0 | |
| d2pgga1 | 774 | Viral RNA polymerase {Avian infectious bursal dise | 100.0 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 100.0 | |
| g1gk9.1 | 765 | Penicillin acylase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1bjta_ | 760 | DNA topoisomerase II, C-terminal fragment (residue | 100.0 | |
| d1h16a_ | 759 | Pyruvate formate-lyase, PFL {Escherichia coli [Tax | 100.0 | |
| g1cp9.1 | 750 | Penicillin acylase {Providencia rettgeri [TaxId: 5 | 100.0 | |
| d1jb0a_ | 743 | Apoprotein a1, PsaA {Synechococcus elongatus [TaxI | 100.0 | |
| d1itwa_ | 740 | Monomeric isocitrate dehydrogenase {Azotobacter vi | 100.0 | |
| d1jb0b_ | 739 | Apoprotein a2, PsaB {Synechococcus elongatus [TaxI | 100.0 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 100.0 | |
| d1oaoc_ | 729 | Bifunctional carbon monoxide dehydrogenase/acetyl- | 100.0 | |
| d1vlfm2 | 728 | Transhydroxylase alpha subunit, AthL {Pelobacter a | 100.0 | |
| d1n8ia_ | 726 | Malate synthase G {Mycobacterium tuberculosis [Tax | 100.0 | |
| d1acca_ | 722 | Anthrax protective antigen {Anthrax bacillus (Baci | 100.0 | |
| d1l1la_ | 721 | B12-dependent (class II) ribonucleotide reductase | 100.0 | |
| d1d8ca_ | 720 | Malate synthase G {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1fepa_ | 714 | Ferric enterobactin receptor FepA {Escherichia col | 100.0 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 100.0 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 100.0 | |
| d1by5a_ | 697 | Ferric hydroxamate uptake receptor FhuA {Escherich | 100.0 | |
| d1dmta_ | 696 | Neutral endopeptidase (neprilysin) {Human (Homo sa | 100.0 | |
| d1w27a_ | 692 | Phenylalanine ammonia-lyase, PAL {Parsley (Petrose | 100.0 | |
| d3bnea1 | 690 | Lipoxigenase, C-terminal domain {Soybean (Glycine | 100.0 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 100.0 | |
| d1g8ka2 | 679 | Arsenite oxidase large subunit {Alcaligenes faecal | 100.0 | |
| d1t6ja_ | 678 | Phenylalanine ammonia-lyase, PAL {Fungi (Rhodospor | 100.0 | |
| g1or0.1 | 674 | Cephalosporin acylase {Pseudomonas sp., glutarylam | 100.0 | |
| d1oaoa_ | 673 | Bifunctional carbon monoxide dehydrogenase/acetyl- | 100.0 | |
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1ogya2 | 670 | Periplasmic nitrate reductase alpha chain {Rhodoba | 100.0 | |
| g1jmu.1 | 666 | Membrane penetration protein mu1 {Reovirus [TaxId: | 100.0 | |
| d1i1ip_ | 665 | Neurolysin (endopeptidase 24.16, thimet oligopepti | 100.0 | |
| d1hhsa_ | 664 | dsRNA phage RNA-dependent RNA-polymerase {Bacterio | 100.0 | |
| d1n62b2 | 663 | Carbon monoxide (CO) dehydrogenase molybdoprotein | 100.0 | |
| d1kmoa_ | 661 | Outer membrane transporter FecA {Escherichia coli | 100.0 | |
| d1ffvb2 | 657 | Carbon monoxide (CO) dehydrogenase molybdoprotein | 100.0 | |
| d1s4bp_ | 654 | Neurolysin (endopeptidase 24.16, thimet oligopepti | 100.0 | |
| d1jrob2 | 654 | Xanthine dehydrogenase chain B, C-terminal domain | 100.0 | |
| d1mqsa_ | 653 | Sly1P protein {Baker's yeast (Saccharomyces cerevi | 100.0 | |
| d1iv8a2 | 653 | Maltooligosyl trehalose synthase {Archaeon Sulfolo | 100.0 | |
| d1m1ca_ | 651 | L-A virus major coat protein {Saccharomyces cerevi | 100.0 | |
| d1p2za1 | 646 | Adenovirus hexon {Human adenovirus type 2 [TaxId: | 100.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1l1ya_ | 642 | Processive endocellulase CelF (Cel48F) {Clostridiu | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v97a5 | 638 | Xanthine oxidase, C-terminal domain {Cow (Bos taur | 100.0 | |
| d1rm6a2 | 636 | 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, | 100.0 | |
| d1su7a_ | 633 | Ni-containing carbon monoxide dehydrogenase {Carbo | 100.0 | |
| d1g9ga_ | 629 | Processive endocellulase CelF (Cel48F) {Clostridiu | 100.0 | |
| d2b3ya2 | 629 | Iron-responsive element binding protein 1, N-termi | 100.0 | |
| d2a3la1 | 628 | AMP deaminase (AMPD), catalytic domain {Thale cres | 100.0 | |
| d1tmoa2 | 627 | Trimethylamine N-oxide reductase {Shewanella massi | 100.0 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 100.0 | |
| d1eu1a2 | 622 | Dimethylsulfoxide reductase (DMSO reductase) {Rhod | 100.0 | |
| d1t3qb2 | 621 | Quinoline 2-oxidoreductase large subunit QorL {Pse | 100.0 | |
| d1i7da_ | 620 | DNA topoisomerase III {Escherichia coli [TaxId: 56 | 100.0 | |
| d2guma1 | 615 | Glycoprotein B {Human herpesvirus 1 [TaxId: 10298] | 100.0 | |
| d1jqka_ | 610 | Ni-containing carbon monoxide dehydrogenase {Rhodo | 100.0 | |
| d1j36a_ | 598 | Angiotensin converting enzyme, ACE {Fruit fly (Dro | 100.0 | |
| d1vlba4 | 597 | Aldehyde oxidoreductase {Desulfovibrio gigas [TaxI | 100.0 | |
| d2ajfa1 | 597 | Angiotensin converting enzyme 2, ACE2 {Human (Homo | 100.0 | |
| d2jioa2 | 597 | Periplasmic nitrate reductase alpha chain {Desulfo | 100.0 | |
| d1dgja4 | 596 | Aldehyde oxidoreductase {Desulfovibrio desulfurica | 100.0 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 100.0 | |
| d1qhba_ | 595 | Haloperoxidase (bromoperoxidase) {Red algae (Coral | 100.0 | |
| d1mw9x_ | 591 | DNA topoisomerase I, 67K N-terminal domain {Escher | 100.0 | |
| d2gufa1 | 591 | Outer membrane cobalamin transporter BtuB {Escheri | 100.0 | |
| d1epua_ | 590 | Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig | 100.0 | |
| d1dn1a_ | 589 | Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax | 100.0 | |
| d1s48a_ | 588 | Viral RNA polymerase {Bovine viral diarrhea virus | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 100.0 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 100.0 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 100.0 | |
| d1cjya2 | 580 | Cytosolic phospholipase A2 catalytic domain {Human | 100.0 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 100.0 | |
| d1uzea_ | 579 | Angiotensin converting enzyme, ACE {Human (Homo sa | 100.0 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 100.0 | |
| d1vnsa_ | 574 | Chloroperoxidase {Curvularia inaequalis [TaxId: 38 | 100.0 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 100.0 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 100.0 | |
| d1p80a2 | 571 | Catalase II {Escherichia coli, HPII [TaxId: 562]} | 100.0 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 100.0 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 100.0 | |
| g1cxp.1 | 570 | Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d2iv2x2 | 564 | Formate dehydrogenase H {Escherichia coli [TaxId: | 100.0 | |
| d2fhfa5 | 563 | Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57 | 100.0 | |
| d1no7a_ | 562 | Major capsid protein VP5 {Herpes simplex virus 1 [ | 100.0 | |
| d1h41a1 | 561 | alpha-D-glucuronidase catalytic domain {Pseudomona | 100.0 | |
| d1q50a_ | 561 | Phosphoglucose isomerase, PGI {Leishmania mexicana | 100.0 | |
| d1hk8a_ | 561 | Class III anaerobic ribonucleotide reductase NRDD | 100.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 100.0 | |
| d7reqa1 | 557 | Methylmalonyl-CoA mutase alpha subunit, domain 1 { | 100.0 | |
| d1iata_ | 556 | Phosphoglucose isomerase, PGI {Human (Homo sapiens | 100.0 | |
| d1gkub3 | 556 | Topoisomerase "domain" of reverse gyrase {Archaeon | 100.0 | |
| d1n7va_ | 555 | Adsorption protein p2 {Bacteriophage prd1 [TaxId: | 100.0 | |
| d1qi9a_ | 555 | Haloperoxidase (bromoperoxidase) {Ascophyllum nodo | 100.0 | |
| d1uwka_ | 554 | Urocanate hydratase HutU {Pseudomonas putida [TaxI | 100.0 | |
| d1tywa_ | 554 | P22 tailspike protein {Salmonella phage P22 [TaxId | 100.0 | |
| d1g5aa2 | 554 | Amylosucrase {Neisseria polysaccharea [TaxId: 489] | 100.0 | |
| d1p49a_ | 553 | Steryl-sulfatase {Human (Homo sapiens) [TaxId: 960 | 100.0 | |
| d1gnta_ | 553 | Hybrid cluster protein (prismane protein) {Desulfo | 100.0 | |
| d1eexa_ | 551 | Diol dehydratase, alpha subunit {Klebsiella oxytoc | 100.0 | |
| d2p0ma1 | 551 | 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T | 100.0 | |
| d2b7ma1 | 551 | Exocyst complex component EXO70 {Baker's yeast (Sa | 100.0 | |
| d2f48a1 | 550 | Pyrophosphate-dependent phosphofructokinase {Lyme | 100.0 | |
| d1eg7a_ | 549 | Formyltetrahydrofolate synthetase {Moorella thermo | 100.0 | |
| d1mvma_ | 549 | Parvovirus (panleukopenia virus) capsid protein {M | 100.0 | |
| d1xmea1 | 549 | Bacterial ba3 type cytochrome c oxidase subunit I | 100.0 | |
| d1c8da_ | 548 | Parvovirus (panleukopenia virus) capsid protein {C | 100.0 | |
| d1x87a_ | 545 | Urocanate hydratase HutU {Bacillus stearothermophi | 100.0 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 100.0 | |
| d1gnla_ | 543 | Hybrid cluster protein (prismane protein) {Desulfo | 100.0 | |
| d1frfl_ | 543 | Nickel-iron hydrogenase, large subunit {Desulfovib | 100.0 | |
| d2bvla1 | 542 | Toxin B {Clostridium difficile [TaxId: 1496]} | 100.0 | |
| d1k3va_ | 542 | Parvovirus (panleukopenia virus) capsid protein {P | 100.0 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 100.0 | |
| g2dg5.1 | 541 | Gamma-glutamyltranspeptidase, GGT {Escherichia col | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d2vk9a1 | 540 | Alpha-toxin {Clostridium novyi [TaxId: 1542]} | 100.0 | |
| d1daba_ | 539 | Virulence factor P.69 pertactin {Bordetella pertus | 100.0 | |
| d1ohfa_ | 539 | Tetraomegavirus capsid protein {Nudaurelia capensi | 100.0 | |
| d3dtua1 | 538 | Bacterial aa3 type cytochrome c oxidase subunit I | 100.0 | |
| d2nlza1 | 537 | Cephalosporin acylase {Bacillus halodurans [TaxId: | 100.0 | |
| d1mt5a_ | 537 | Fatty acid amide hydrolase (oleamide hydrolase) {R | 100.0 | |
| d1e3db_ | 537 | Nickel-iron hydrogenase, large subunit {Desulfovib | 100.0 | |
| d1l8na1 | 536 | alpha-D-glucuronidase catalytic domain {Bacillus s | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1s58a_ | 536 | Parvovirus (panleukopenia virus) capsid protein {H | 100.0 | |
| d1vr5a1 | 535 | Oligo-peptide binding protein (OPPA) {Thermotoga m | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1wuil1 | 534 | Nickel-iron hydrogenase, large subunit {Desulfovib | 100.0 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 100.0 | |
| d1epwa3 | 533 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| g2nqo.1 | 533 | Gamma-glutamyltranspeptidase, GGT {Helicobacter py | 100.0 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 100.0 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 100.0 | |
| d1v7wa1 | 531 | Chitobiose phosphorylase ChbP {Vibrio proteolyticu | 100.0 | |
| d1gx5a_ | 530 | Viral RNA polymerase {Hepatitis C virus [TaxId: 11 | 100.0 | |
| d1yq9h1 | 530 | Nickel-iron hydrogenase, large subunit {Desulfovib | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 100.0 | |
| d1ih7a2 | 528 | Family B DNA polymerase {Bacteriophage RB69 [TaxId | 100.0 | |
| d1acoa2 | 527 | Aconitase A, N-terminal domain {Cow (Bos taurus) [ | 100.0 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 100.0 | |
| d1mioa_ | 525 | Nitrogenase iron-molybdenum protein, alpha chain { | 100.0 | |
| d1rlra2 | 525 | R1 subunit of ribonucleotide reductase, C-terminal | 100.0 | |
| d1peqa2 | 525 | R1 subunit of ribonucleotide reductase, C-terminal | 100.0 | |
| d1hdha_ | 525 | Arylsulfatase B (4-sulfatase) {Pseudomonas aerugin | 100.0 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1x1na1 | 523 | Amylomaltase MalQ {Potato (Solanum tuberosum) [Tax | 100.0 | |
| d1m1nb_ | 522 | Nitrogenase iron-molybdenum protein, beta chain {A | 100.0 | |
| d3bvua2 | 522 | Golgi alpha-mannosidase II {Fruit fly (Drosophila | 100.0 | |
| d1lp3a_ | 519 | Dependovirus capsid protein {Adeno-associated viru | 100.0 | |
| d1dqua_ | 519 | Isocitrate lyase {Aspergillus nidulans [TaxId: 162 | 100.0 | |
| d1qh8b_ | 519 | Nitrogenase iron-molybdenum protein, beta chain {K | 100.0 | |
| d2d32a1 | 518 | Gamma-glutamylcysteine synthetase GshA {Escherichi | 100.0 | |
| d1jeta_ | 517 | Oligo-peptide binding protein (OPPA) {Salmonella t | 100.0 | |
| d1i7qa_ | 517 | Anthranilate synthase aminodeoxyisochorismate synt | 100.0 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 100.0 | |
| d1xrsa_ | 516 | D-lysine 5,6-aminomutase alpha subunit, KamD {Clos | 100.0 | |
| d1v0ea1 | 516 | Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 | 100.0 | |
| d2i3oa1 | 516 | Hypothetical protein Ta0994 {Thermoplasma acidophi | 100.0 | |
| d1uzba_ | 516 | 1-pyrroline-5-carboxylate dehydrogenase {Thermus t | 100.0 | |
| d1v54a_ | 514 | Mitochondrial cytochrome c oxidase, subunit I {Cow | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d2i7xa1 | 514 | Cleavage factor two protein 2, CFT2 {Baker's yeast | 100.0 | |
| d1mtyd_ | 512 | Methane monooxygenase hydrolase alpha subunit {Met | 100.0 | |
| d2jg0a1 | 511 | Periplasmic trehalase TreA {Escherichia coli [TaxI | 100.0 | |
| d1ut9a1 | 511 | Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu | 100.0 | |
| d1kl7a_ | 511 | Threonine synthase {Baker's yeast (Saccharomyces c | 100.0 | |
| d1dl2a_ | 511 | Class I alpha-1;2-mannosidase, catalytic domain {B | 100.0 | |
| d1cvua1 | 511 | Prostaglandin H2 synthase {Mouse (Mus musculus) [T | 100.0 | |
| d1q4ga1 | 511 | Prostaglandin H2 synthase {Sheep (Ovis aries) [Tax | 100.0 | |
| d3ckca1 | 510 | Starch utilization system protein SusD {Bacteroide | 100.0 | |
| d1gkma_ | 509 | Histidine ammonia-lyase (HAL) {Pseudomonas putida | 100.0 | |
| d1k8ta_ | 509 | Adenylylcyclase toxin (the edema factor) {Bacillus | 100.0 | |
| d1y5ib1 | 509 | Respiratory nitrate reductase 1 beta chain {Escher | 100.0 | |
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 100.0 | |
| d3cgha1 | 507 | Uncharacterized protein BT3984 {Bacteroides thetai | 100.0 | |
| d1dpea_ | 507 | Dipeptide-binding protein {Escherichia coli [TaxId | 100.0 | |
| d2cfua2 | 505 | Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI | 100.0 | |
| d2cvca1 | 505 | 16-heme cytochrome c HmcA {Desulfovibrio vulgaris | 100.0 | |
| d1rt8a_ | 505 | Fimbrin (Plastin), actin-crosslinking domain {Fiss | 100.0 | |
| d1xoca1 | 504 | Oligo-peptide binding protein (OPPA) {Bacillus sub | 100.0 | |
| d1ez0a_ | 504 | Aldehyde reductase (dehydrogenase), ALDH {Vibrio h | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1a4sa_ | 503 | Aldehyde reductase (dehydrogenase), ALDH {Baltic c | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1sh0a_ | 502 | Viral RNA polymerase {Norwalk virus [TaxId: 11983] | 100.0 | |
| d1ffta_ | 501 | Cytochrome O ubiquinol oxidase, subunit I {Escheri | 100.0 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 100.0 | |
| d1b1ya_ | 500 | beta-Amylase {Barley (Hordeum vulgare) [TaxId: 451 | 100.0 | |
| d1eswa_ | 500 | Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | 100.0 | |
| d1pxya_ | 500 | Fimbrin (Plastin), actin-crosslinking domain {Thal | 100.0 | |
| d1ky8a_ | 499 | Non-phosphorylating glyceraldehyde-3-phosphate deh | 100.0 | |
| d1zlqa1 | 499 | Nickel-binding periplasmic protein NikA {Escherich | 100.0 | |
| d1e4mm_ | 499 | Plant beta-glucosidase (myrosinase) {White mustard | 100.0 | |
| d1fgja_ | 499 | Hydroxylamine oxidoreductase, HAO {Nitrosomonas eu | 100.0 | |
| d1fa2a_ | 498 | beta-Amylase {Sweet potato (Ipomoea batatas) [TaxI | 100.0 | |
| d1gwea_ | 498 | Catalase I {Micrococcus lysodeikticus [TaxId: 1270 | 100.0 | |
| d1k9xa_ | 497 | Thermostable carboxypeptidase 1 {Archaeon Pyrococc | 100.0 | |
| d1dgfa_ | 497 | Catalase I {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kvpa_ | 497 | Microvirus capsid proteins {Bacteriophage phi-X174 | 100.0 | |
| d1khva_ | 497 | Viral RNA polymerase {Rabbit hemorrhagic disease v | 100.0 | |
| d1q47a_ | 495 | Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090] | 100.0 | |
| d1bxsa_ | 494 | Aldehyde reductase (dehydrogenase), ALDH {Sheep (O | 100.0 | |
| d1o04a_ | 494 | Aldehyde reductase (dehydrogenase), ALDH {Human (H | 100.0 | |
| d1x9ma2 | 494 | T7 phage DNA polymerase {Bacteriophage T7 [TaxId: | 100.0 | |
| d1h3na3 | 494 | Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil | 100.0 | |
| d1ab4a_ | 493 | DNA Gyrase A {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1ihma_ | 492 | Calicivirus capsid protein {Norwalk virus [TaxId: | 100.0 | |
| d1j1na_ | 492 | Alginate-binding periplasmic protein AlgQ2 {Sphing | 100.0 | |
| d2fbaa1 | 492 | Glucoamylase {Yeast (Saccharomycopsis fibuligera) | 100.0 | |
| d1fsua_ | 492 | Arylsulfatase B (4-sulfatase) {Human (Homo sapiens | 100.0 | |
| d1qwla_ | 491 | Catalase I {Helicobacter pylori [TaxId: 210]} | 100.0 | |
| d2inca1 | 491 | Toluene, o-xylene monooxygenase oxygenase subunit | 100.0 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 100.0 | |
| d1m22a_ | 490 | Peptide amidase Pam {Stenotrophomonas maltophilia | 100.0 | |
| d1l5ja3 | 490 | Aconitase B, C-terminal domain {Escherichia coli [ | 100.0 | |
| d1cbga_ | 490 | Plant beta-glucosidase (myrosinase) {Creeping whit | 100.0 | |
| d1wdpa1 | 490 | beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} | 100.0 | |
| g1o7d.2 | 490 | Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax | 100.0 | |
| d1uwsa_ | 489 | beta-Glycosidase {Archaeon Sulfolobus solfataricus | 100.0 | |
| d2axtb1 | 488 | Photosystem II core light harvesting protein PsbB | 100.0 | |
| d2axtb1 | 488 | Photosystem II core light harvesting protein PsbB | 100.0 | |
| d1a4ea_ | 488 | Catalase I {Baker's yeast (Saccharomyces cerevisia | 100.0 | |
| d1a4ea_ | 488 | Catalase I {Baker's yeast (Saccharomyces cerevisia | 100.0 | |
| d1hcua_ | 488 | Class I alpha-1;2-mannosidase, catalytic domain {T | 100.0 | |
| d1hcua_ | 488 | Class I alpha-1;2-mannosidase, catalytic domain {T | 100.0 | |
| d1uqwa_ | 487 | Hypothetical protein YliB {Escherichia coli [TaxId | 100.0 | |
| d1uqwa_ | 487 | Hypothetical protein YliB {Escherichia coli [TaxId | 100.0 | |
| d1cc1l_ | 487 | Nickel-iron hydrogenase, large subunit {Desulfomic | 100.0 | |
| d1cc1l_ | 487 | Nickel-iron hydrogenase, large subunit {Desulfomic | 100.0 | |
| d2f2aa1 | 485 | Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta | 100.0 | |
| d1tz7a1 | 485 | Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363] | 100.0 | |
| d2f2aa1 | 485 | Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta | 100.0 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 100.0 | |
| d1auka_ | 485 | Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d1tz7a1 | 485 | Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363] | 100.0 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 100.0 | |
| d1auka_ | 485 | Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d1h54a1 | 485 | Lactobacillus maltose phosphorylase, central domai | 100.0 | |
| d1h54a1 | 485 | Lactobacillus maltose phosphorylase, central domai | 100.0 | |
| d1m7sa_ | 484 | Catalase I {Pseudomonas syringae [TaxId: 317]} | 100.0 | |
| d1m7sa_ | 484 | Catalase I {Pseudomonas syringae [TaxId: 317]} | 100.0 | |
| d1v02a_ | 484 | Plant beta-glucosidase (myrosinase) {Sorghum bicol | 100.0 | |
| d1v02a_ | 484 | Plant beta-glucosidase (myrosinase) {Sorghum bicol | 100.0 | |
| d1ccwb_ | 483 | Glutamate mutase, large subunit {Clostridium cochl | 100.0 | |
| d1ccwb_ | 483 | Glutamate mutase, large subunit {Clostridium cochl | 100.0 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 100.0 | |
| d2slia2 | 483 | Leech intramolecular trans-sialidase, C-terminal d | 100.0 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 100.0 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 100.0 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 100.0 | |
| d2slia2 | 483 | Leech intramolecular trans-sialidase, C-terminal d | 100.0 | |
| d1oaha_ | 482 | Cytochrome c nitrite reductase {Desulfovibrio desu | 100.0 | |
| d1oaha_ | 482 | Cytochrome c nitrite reductase {Desulfovibrio desu | 100.0 | |
| d1nvus_ | 481 | Son of sevenless protein homolog 1 (sos-1) {Human | 100.0 | |
| d1ofla_ | 481 | Chondroitinase B {Pedobacter heparinus [TaxId: 984 | 100.0 | |
| d1nvus_ | 481 | Son of sevenless protein homolog 1 (sos-1) {Human | 100.0 | |
| d1ofla_ | 481 | Chondroitinase B {Pedobacter heparinus [TaxId: 984 | 100.0 | |
| d1qvba_ | 481 | beta-Glycosidase {Archaeon Thermosphaera aggregans | 100.0 | |
| d1qvba_ | 481 | beta-Glycosidase {Archaeon Thermosphaera aggregans | 100.0 | |
| d1uc2a_ | 480 | Hypothetical protein PH1602 {Archaeon Pyrococcus h | 100.0 | |
| d1uc2a_ | 480 | Hypothetical protein PH1602 {Archaeon Pyrococcus h | 100.0 | |
| d1zeda1 | 479 | Alkaline phosphatase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1zeda1 | 479 | Alkaline phosphatase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1uoka2 | 479 | Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1olza2 | 478 | Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1olza2 | 478 | Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 100.0 | |
| d1t8sa_ | 477 | AMP nucleosidase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1t8sa_ | 477 | AMP nucleosidase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 100.0 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 100.0 | |
| d1m1na_ | 477 | Nitrogenase iron-molybdenum protein, alpha chain { | 100.0 | |
| d1e5xa_ | 477 | Threonine synthase {Mouse-ear cress (Arabidopsis t | 100.0 | |
| d1m1na_ | 477 | Nitrogenase iron-molybdenum protein, alpha chain { | 100.0 | |
| d1ewka_ | 477 | Metabotropic glutamate receptor subtype 1 {Rat (Ra | 100.0 | |
| d1e5xa_ | 477 | Threonine synthase {Mouse-ear cress (Arabidopsis t | 100.0 | |
| d1ewka_ | 477 | Metabotropic glutamate receptor subtype 1 {Rat (Ra | 100.0 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 100.0 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 100.0 | |
| d1e93a_ | 476 | Catalase I {Proteus mirabilis [TaxId: 584]} | 100.0 | |
| d1e93a_ | 476 | Catalase I {Proteus mirabilis [TaxId: 584]} | 100.0 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1k7ha_ | 476 | Alkaline phosphatase {Northern shrimp (Pandalus bo | 100.0 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1k7ha_ | 476 | Alkaline phosphatase {Northern shrimp (Pandalus bo | 100.0 | |
| d1u09a_ | 476 | Viral RNA polymerase {Foot-and-mouth disease virus | 100.0 | |
| d1u09a_ | 476 | Viral RNA polymerase {Foot-and-mouth disease virus | 100.0 | |
| d1shyb1 | 476 | Hepatocyte growth factor receptor {Human (Homo sap | 100.0 | |
| d1shyb1 | 476 | Hepatocyte growth factor receptor {Human (Homo sap | 100.0 | |
| d2gi3a1 | 475 | Glutamyl-tRNA(Gln) amidotransferase subunit A {The | 100.0 | |
| d2gi3a1 | 475 | Glutamyl-tRNA(Gln) amidotransferase subunit A {The | 100.0 | |
| d2ri9a1 | 475 | Class I alpha-1;2-mannosidase, catalytic domain {F | 100.0 | |
| d2ri9a1 | 475 | Class I alpha-1;2-mannosidase, catalytic domain {F | 100.0 | |
| d1lmla_ | 475 | Leishmanolysin {Leishmania major [TaxId: 5664]} | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 100.0 | |
| d1lmla_ | 475 | Leishmanolysin {Leishmania major [TaxId: 5664]} | 100.0 | |
| d1si8a_ | 474 | Catalase I {Enterococcus faecalis [TaxId: 1351]} | 100.0 | |
| d1wnda_ | 474 | Putative betaine aldehyde dehydrogenase YdcW {Esch | 100.0 | |
| d1euha_ | 474 | Aldehyde reductase (dehydrogenase), ALDH {Streptoc | 100.0 | |
| d1wnda_ | 474 | Putative betaine aldehyde dehydrogenase YdcW {Esch | 100.0 | |
| d1si8a_ | 474 | Catalase I {Enterococcus faecalis [TaxId: 1351]} | 100.0 | |
| d1musa_ | 474 | Transposase inhibitor (Tn5 transposase) {Escherich | 100.0 | |
| d1euha_ | 474 | Aldehyde reductase (dehydrogenase), ALDH {Streptoc | 100.0 | |
| d1musa_ | 474 | Transposase inhibitor (Tn5 transposase) {Escherich | 100.0 | |
| d1auia_ | 473 | Protein phosphatase-2B (PP-2B, calcineurin A subun | 100.0 | |
| d1auia_ | 473 | Protein phosphatase-2B (PP-2B, calcineurin A subun | 100.0 | |
| d1szqa_ | 473 | 2-methylcitrate dehydratase PrpD {Escherichia coli | 100.0 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 100.0 | |
| d1szqa_ | 473 | 2-methylcitrate dehydratase PrpD {Escherichia coli | 100.0 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 100.0 | |
| d1wpga4 | 472 | Calcium ATPase, transmembrane domain M {Rabbit (Or | 100.0 | |
| d1tqna_ | 472 | Mammalian cytochrome P450 3a4 {Human (Homo sapiens | 100.0 | |
| d1tqna_ | 472 | Mammalian cytochrome P450 3a4 {Human (Homo sapiens | 100.0 | |
| d1wpga4 | 472 | Calcium ATPase, transmembrane domain M {Rabbit (Or | 100.0 | |
| d1gaia_ | 472 | Glucoamylase {Aspergillus awamori, variant x100 [T | 100.0 | |
| d1gaia_ | 472 | Glucoamylase {Aspergillus awamori, variant x100 [T | 100.0 | |
| d1pfoa_ | 471 | Perfringolysin {Clostridium perfringens [TaxId: 15 | 100.0 | |
| d1pfoa_ | 471 | Perfringolysin {Clostridium perfringens [TaxId: 15 | 100.0 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 100.0 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 100.0 | |
| d1fs7a_ | 471 | Cytochrome c nitrite reductase {Wolinella succinog | 100.0 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 100.0 | |
| d1fs7a_ | 471 | Cytochrome c nitrite reductase {Wolinella succinog | 100.0 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 100.0 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 100.0 | |
| d1w36c2 | 470 | Exodeoxyribonuclease V gamma chain (RecC), N-termi | 100.0 | |
| d1w36c2 | 470 | Exodeoxyribonuclease V gamma chain (RecC), N-termi | 100.0 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 100.0 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 100.0 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 100.0 | |
| d2iqha1 | 469 | Nucleocapsid protein {Influenza A virus [TaxId: 11 | 100.0 | |
| d2iqha1 | 469 | Nucleocapsid protein {Influenza A virus [TaxId: 11 | 100.0 | |
| d2ga9d1 | 468 | Poly(A) polymerase catalytic subunit, PAPL {Vaccin | 100.0 | |
| d2ga9d1 | 468 | Poly(A) polymerase catalytic subunit, PAPL {Vaccin | 100.0 | |
| d1pbga_ | 468 | 6-phospho-beta-D-galactosidase, PGAL {Lactococcus | 100.0 | |
| d1pbga_ | 468 | 6-phospho-beta-D-galactosidase, PGAL {Lactococcus | 100.0 | |
| d2qxfa1 | 467 | Exonuclease I {Escherichia coli K12 (Escherichia c | 100.0 | |
| d1r9oa_ | 467 | Mammalian cytochrome p450 2c9 {Human (Homo sapiens | 100.0 | |
| d1nxca_ | 467 | Class I alpha-1;2-mannosidase, catalytic domain {M | 100.0 | |
| d1r9oa_ | 467 | Mammalian cytochrome p450 2c9 {Human (Homo sapiens | 100.0 | |
| d1gc5a_ | 467 | ADP-dependent glucokinase {Archaeon Thermococcus l | 100.0 | |
| d2qxfa1 | 467 | Exonuclease I {Escherichia coli K12 (Escherichia c | 100.0 | |
| d1nxca_ | 467 | Class I alpha-1;2-mannosidase, catalytic domain {M | 100.0 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 100.0 | |
| d1w79a1 | 467 | D-alanyl-D-alanine carboxypeptidase Dac {Actinomad | 100.0 | |
| d1gc5a_ | 467 | ADP-dependent glucokinase {Archaeon Thermococcus l | 100.0 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 100.0 | |
| d1w79a1 | 467 | D-alanyl-D-alanine carboxypeptidase Dac {Actinomad | 100.0 | |
| d1po5a_ | 465 | Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus | 100.0 | |
| d1po5a_ | 465 | Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus | 100.0 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 100.0 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 100.0 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 100.0 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 100.0 | |
| d1h80a_ | 464 | iota-carrageenase {Alteromonas sp., atcc 43554 [Ta | 100.0 | |
| d1h80a_ | 464 | iota-carrageenase {Alteromonas sp., atcc 43554 [Ta | 100.0 | |
| d1gnxa_ | 464 | Beta-glucosidase A {Streptomyces sp. [TaxId: 1931] | 100.0 | |
| d1gnxa_ | 464 | Beta-glucosidase A {Streptomyces sp. [TaxId: 1931] | 100.0 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 100.0 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 100.0 | |
| d3czha1 | 463 | Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapie | 100.0 | |
| d3czha1 | 463 | Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapie | 100.0 | |
| d2b7oa1 | 462 | Probable DAHP synthetase AroG, phenylalanine-repre | 100.0 | |
| d2b7oa1 | 462 | Probable DAHP synthetase AroG, phenylalanine-repre | 100.0 | |
| d1j3ua_ | 462 | L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T | 100.0 | |
| d1j3ua_ | 462 | L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T | 100.0 | |
| d1wcga1 | 462 | Thioglucosidase {Cabbage aphid (Brevicoryne brassi | 100.0 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 100.0 | |
| d1wcga1 | 462 | Thioglucosidase {Cabbage aphid (Brevicoryne brassi | 100.0 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 100.0 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 100.0 | |
| d2p3ya1 | 461 | Hypothetical protein VPA0735 {Vibrio parahaemolyti | 100.0 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d2p3ya1 | 461 | Hypothetical protein VPA0735 {Vibrio parahaemolyti | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1ra6a_ | 461 | Viral RNA polymerase {Poliovirus type 1, strain Ma | 100.0 | |
| d1ra6a_ | 461 | Viral RNA polymerase {Poliovirus type 1, strain Ma | 100.0 | |
| d1vdka_ | 460 | Fumarase {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d7reqb1 | 460 | Methylmalonyl-CoA mutase beta subunit, domain 1 {P | 100.0 | |
| d1vdka_ | 460 | Fumarase {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 100.0 | |
| d7reqb1 | 460 | Methylmalonyl-CoA mutase beta subunit, domain 1 {P | 100.0 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 100.0 | |
| d1tf4a1 | 460 | Endo/exocellulase:cellobiose E-4, N-terminal domai | 100.0 | |
| d1xr7a_ | 460 | Viral RNA polymerase {Human rhinovirus 16, HRV-16 | 100.0 | |
| d1xr5a_ | 460 | Viral RNA polymerase {Human rhinovirus 14, HRV-14 | 100.0 | |
| d1tf4a1 | 460 | Endo/exocellulase:cellobiose E-4, N-terminal domai | 100.0 | |
| d1xr7a_ | 460 | Viral RNA polymerase {Human rhinovirus 16, HRV-16 | 100.0 | |
| d1xr5a_ | 460 | Viral RNA polymerase {Human rhinovirus 14, HRV-14 | 100.0 | |
| d1w7ca1 | 460 | Lysyl oxidase PplO, domain 3 {Yeast (Pichia pastor | 100.0 | |
| d1w7ca1 | 460 | Lysyl oxidase PplO, domain 3 {Yeast (Pichia pastor | 100.0 | |
| d1k62b_ | 459 | Argininosuccinate lyase/delta-crystallin {Human (H | 100.0 | |
| d1jswa_ | 459 | L-aspartate ammonia lyase {Escherichia coli [TaxId | 100.0 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 100.0 | |
| d1yfma_ | 459 | Fumarase {Baker's yeast (Saccharomyces cerevisiae) | 100.0 | |
| d1k62b_ | 459 | Argininosuccinate lyase/delta-crystallin {Human (H | 100.0 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 100.0 | |
| d1jswa_ | 459 | L-aspartate ammonia lyase {Escherichia coli [TaxId | 100.0 | |
| d1yfma_ | 459 | Fumarase {Baker's yeast (Saccharomyces cerevisiae) | 100.0 | |
| d3ejna1 | 459 | Uncharacterized protein BF3025 {Bacteroides fragil | 100.0 | |
| d3ejna1 | 459 | Uncharacterized protein BF3025 {Bacteroides fragil | 100.0 | |
| d2bdea1 | 458 | Cytosolic IMP-GMP specific 5'-nucleotidase {Legion | 100.0 | |
| d3gcba_ | 458 | Bleomycin hydrolase {Baker's yeast (Saccharomyces | 100.0 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1w5da1 | 458 | Penicillin-binding protein DacC {Bacillus subtilis | 100.0 | |
| d2bdea1 | 458 | Cytosolic IMP-GMP specific 5'-nucleotidase {Legion | 100.0 | |
| d1w5da1 | 458 | Penicillin-binding protein DacC {Bacillus subtilis | 100.0 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d3gcba_ | 458 | Bleomycin hydrolase {Baker's yeast (Saccharomyces | 100.0 | |
| d1ntha_ | 457 | Monomethylamine methyltransferase MtmB {Archaeon M | 100.0 | |
| d1ntha_ | 457 | Monomethylamine methyltransferase MtmB {Archaeon M | 100.0 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1miob_ | 457 | Nitrogenase iron-molybdenum protein, beta chain {C | 100.0 | |
| d1miob_ | 457 | Nitrogenase iron-molybdenum protein, beta chain {C | 100.0 | |
| d1wp1a_ | 456 | Outer membrane protein OprM {Pseudomonas aeruginos | 100.0 | |
| d1wp1a_ | 456 | Outer membrane protein OprM {Pseudomonas aeruginos | 100.0 | |
| d2ex2a1 | 456 | DD-carboxypeptidase DacB {Escherichia coli [TaxId: | 100.0 | |
| d1fuoa_ | 456 | Fumarase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 100.0 | |
| d2ex2a1 | 456 | DD-carboxypeptidase DacB {Escherichia coli [TaxId: | 100.0 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 100.0 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 100.0 | |
| d1fuoa_ | 456 | Fumarase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 100.0 | |
| d1dzla_ | 455 | Papillomavirus L1 protein {Human papillomavirus ty | 100.0 | |
| d1dzla_ | 455 | Papillomavirus L1 protein {Human papillomavirus ty | 100.0 | |
| d1tj7a_ | 455 | Argininosuccinate lyase/delta-crystallin {Escheric | 100.0 | |
| d1tj7a_ | 455 | Argininosuccinate lyase/delta-crystallin {Escheric | 100.0 | |
| d1ua4a_ | 454 | ADP-dependent glucokinase {Archaeon Pyrococcus fur | 100.0 | |
| d1g87a1 | 454 | Endo/exocellulase:cellobiose E-4, N-terminal domai | 100.0 | |
| d1ua4a_ | 454 | ADP-dependent glucokinase {Archaeon Pyrococcus fur | 100.0 | |
| d1g87a1 | 454 | Endo/exocellulase:cellobiose E-4, N-terminal domai | 100.0 | |
| d1k0ga_ | 453 | P-aminobenzoate synthase component I {Escherichia | 100.0 | |
| d2cb5a_ | 453 | Bleomycin hydrolase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1k0ga_ | 453 | P-aminobenzoate synthase component I {Escherichia | 100.0 | |
| d2cb5a_ | 453 | Bleomycin hydrolase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d2o6ia1 | 453 | Hypothetical protein EF1143 {Enterococcus faecalis | 100.0 | |
| d2o6ia1 | 453 | Hypothetical protein EF1143 {Enterococcus faecalis | 100.0 | |
| d1x9da1 | 453 | Class I alpha-1;2-mannosidase, catalytic domain {H | 100.0 | |
| d2ij2a1 | 453 | Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: | 100.0 | |
| d2bg1a1 | 453 | Penicillin-binding protein 1b, transpeptidase doma | 100.0 | |
| d1x9da1 | 453 | Class I alpha-1;2-mannosidase, catalytic domain {H | 100.0 | |
| d2ij2a1 | 453 | Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: | 100.0 | |
| d2bg1a1 | 453 | Penicillin-binding protein 1b, transpeptidase doma | 100.0 | |
| d1lsha3 | 452 | Lipovitellin-phosvitin complex; beta-sheet shell r | 100.0 | |
| d1lsha3 | 452 | Lipovitellin-phosvitin complex; beta-sheet shell r | 100.0 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 100.0 | |
| d1tyea_ | 452 | Integrin alpha N-terminal domain {Human (Homo sapi | 100.0 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 100.0 | |
| d1tyea_ | 452 | Integrin alpha N-terminal domain {Human (Homo sapi | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1ilea3 | 452 | Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop | 100.0 | |
| d1j5sa_ | 451 | Uronate isomerase TM0064 {Thermotoga maritima [Tax | 100.0 | |
| d2i7ta1 | 451 | Cleavage and polyadenylation specificity factor su | 100.0 | |
| d1l2la_ | 451 | ADP-dependent glucokinase {Archaeon Thermococcus l | 100.0 | |
| d2i7ta1 | 451 | Cleavage and polyadenylation specificity factor su | 100.0 | |
| d1j5sa_ | 451 | Uronate isomerase TM0064 {Thermotoga maritima [Tax | 100.0 | |
| d1l2la_ | 451 | ADP-dependent glucokinase {Archaeon Thermococcus l | 100.0 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 100.0 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 100.0 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d1u2xa_ | 450 | ADP-specific phosphofructokinase {Pyrococcus horik | 100.0 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 100.0 |
| >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta-prime domain: RNA-polymerase beta-prime species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=115215.12 Aligned_cols=1 Identities=100% Similarity=0.603 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~i~i~lASpe~Ir~Ws~GeV~kpeTinYrT~KPE~dGLFcerIFGP~kd~eC~CGKyk~~~~~g~vC~~CgVevt 80 (1504)
T d1smyd_ 1 KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVT 80 (1504)
T ss_dssp CCCCCEEEEECCCHHHHHHHEEEECCSCCCBCTTSSSBCSSSSSCHHHHCCSSSSSCSSCSCCSSSSSSCCCSSSCCCCS
T ss_pred CCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCEECCCCCCEEC
T ss_conf 98555379984488999874475638987656577899887853410008883766728776652519977799986877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~s~vRR~RmGhIeLa~PV~HiWy~k~~PS~i~~lL~~~~k~lE~v~Y~~~yiv~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (1504)
T d1smyd_ 81 KSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYREL 160 (1504)
T ss_dssp STHHHHHCEEEEEEEEEEECGGGTSSSSCHHHHHTTSCTTHHHHHHHTSCCCEECSCCCSCSSSSCCTTCBCCHHHHHHH
T ss_pred CCCHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCHHHHHHEEEECCEEEECCCCCCCCCCCHHHHCCCCHHHHHHH
T ss_conf 30167653587003687434374588605999980999888251012001687457855456673254222549999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1504)
T d1smyd_ 161 RYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEI 240 (1504)
T ss_dssp HTCSCEECCCCSTTTHHHHHTGGGTBSCCCCTTEECCSSSCCEECSCSCEEECCCCSSCCCSCCTTTTTTTGGGTSSSCT
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 64012101233213444200245430022211344310024443333333355655443210002444444442011556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1504)
T d1smyd_ 241 LAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQ 320 (1504)
T ss_dssp TTTSTTTTCC----------------------------------------------------------------------
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHCCHHHHHHHHHHH
T ss_conf 65420001110001013566555321122101222221101244344422122012210010000000001233444444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1504)
T d1smyd_ 321 VEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVY 400 (1504)
T ss_dssp ------------------------------------------CCCCCSSCCCSSCCBTTBCSCCCCCCCEEEECSEEESS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 33332100112222221035410012333443454200000121000024766643333210000123210012332334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~g~r~~~~d~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1504)
T d1smyd_ 401 PFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEM 480 (1504)
T ss_dssp CCCCTTSSCCSCCSSSCCCSCCSSCCCCSSCCEEEEETTTTEEEEECCCCCCEECSHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 32121111347622401321012321003565556778888886512201444455899999987410356677888764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~f~~~~~rPe~mil~~lPVpP~~~RP~v~~~~~~~~~ddlt~~~~~II~~N~~Lk~~~~~~ 560 (1504)
T d1smyd_ 481 KHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQG 560 (1504)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHHTTSCCGGGGEEEEEEECCSTTSCEEECSTTCEEECTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 02046788999998999998876599857858631458997778718968986667730589999999989999998759
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ap~~~i~~~~~~LQ~~V~~l~dn~~~g~~~~~~~~~rplksi~~rLkGK~GRfR~NLmGKRVDfSgRSVIspDP~L~l~E 640 (1504)
T d1smyd_ 561 APEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQ 640 (1504)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTSSCCCBCSTTCCCBCCCHHHHHHTTTTHHHHHTTCEEESSEEEEEEEECTTCCTTE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 95778999999999999999743466887546666876521888860225601024566645654775143899865200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 vGvP~~mA~~Lt~P~~v~~l~~~~~~~~ik~~~~~i~~~~~~~~~v~~Vlrhli~GD~VL~NRQPTLHR~SImAh~~~l~ 720 (1504)
T d1smyd_ 641 CGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLV 720 (1504)
T ss_dssp EBCBHHHHHHHTHHHHHHHHHHSTTCSSHHHHHHHHHSGGGCCTHHHHHHHHHHSSCCEEEECSSCCSGGGEEEEEECCB
T ss_pred CCCHHHHHHHCCCCEEEEHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHEEEECCCEEEECCCCCCCCCEEEEEEEEEC
T ss_conf 46758898839520777717664887774177764310221231001021013559888746888636151057888970
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~gkTiRLnp~vC~pyNADFDGDEMNvHvPQS~eAraEa~~LM~~~~nilsP~~G~PIi~~iQD~ilG~ylLT~~~~~~k~ 800 (1504)
T d1smyd_ 721 EGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKG 800 (1504)
T ss_dssp SSSSEEECSGGGTTTTCCSSSCEEEEECCCSHHHHHHHHHHSBSTTCCBCSSSSSBSSCCCSHHHHHHHHHSCCCCCCCC
T ss_pred CCCEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHEEEEEEECCCCC
T ss_conf 78436624212455557887746898657888899999998626356633899981442005655232012442034456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~~~~f~~~~e~l~a~~~~~i~l~~pi~~k~k~l~tGkq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~tt~G~i~ 880 (1504)
T d1smyd_ 801 AGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRIL 880 (1504)
T ss_dssp SCCCTTSCSHHHHHHHHHHHTTSSCSSCCCSSCCHHHHHCEESSHHHHHHHHHTTSSCTTSCCEEEETTEEECCCHHHHH
T ss_pred CEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 31572679999864140531457885323455555622343046664310035776564334543447863447787255
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 ~~~~~~~~v~~~~~~~~~~~~~~~~~k~~l~~LI~~i~~~yG~~~t~~fLd~lk~Lg~~~l~~~GfSiGI~Di~~~~~k~ 960 (1504)
T d1smyd_ 881 FARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKK 960 (1504)
T ss_dssp HHHHHHHHSSCHHHHHHSCCTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCCGGGSCCCTHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 15555444353312311221344556762788999999996959899999999999999987567753224334687888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 961 ~~I~~a~~~v~~i~~~~~~G~lt~~er~~~v~~~~~~~~~~v~~~~~~~L~~~~p~N~l~~Mv~SGAKGS~~NIsQl~G~ 1040 (1504)
T d1smyd_ 961 QYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGL 1040 (1504)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHSSSSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCC
T ss_conf 99999998889999987547674068899999999999998755566545423888745887505666698999877356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1041 rGL~~~PsG~~ie~pI~sSF~eGLtP~EFFFHtMGGREGLIDTAVKTA~SGYLqRRLVKvlEDl~V~~dd~~~~~~~~i~ 1120 (1504)
T d1smyd_ 1041 RGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVP 1120 (1504)
T ss_dssp CCCCBCSSSCBCSSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHTTTTCBCCCSCCSCCCCEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEE
T ss_conf 24235898755577654550012878999851478762056554054654101477898732523777513554756998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1121 ~~~~~e~~~~l~~~~~~d~~~~~~~r~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~v~vrs~ltc~~~~gvc 1200 (1504)
T d1smyd_ 1121 LFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVC 1200 (1504)
T ss_dssp CEECTTSSSCCEECCHHHHHHHHTTCBBSSCEECSSCEECTTCBCCHHHHHHHHHHHHHSSCSCCEECCGGGCSSTTBCC
T ss_pred EEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHH
T ss_conf 76377433003454201045554412556667641521202430544169999988986286687315754266576689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1201 ~kcyg~~la~~~~V~pGEaVGiIAAQSIGEPgTQMTLnTFH~aGVag~~nIT~GvPRl~EIi~a~kpk~~~iisei~g~v 1280 (1504)
T d1smyd_ 1201 QKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAVISEIDGVV 1280 (1504)
T ss_dssp HHHHCSCSSSSSCCCSSCCHHHHHHHHHHHHHTTSCCSCTTCSCSSTTCCCCCHHHHHHHHHTTCCCTTBCCBCSSCEEE
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCEE
T ss_conf 99877778608908998878787745368337767786554034677776057770079887415789986488625669
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1281 ~i~~~~~~~~v~i~~~~~~~~~~ip~~~~l~V~~gd~V~~g~~l~~g~i~p~~iL~~~g~~~~~~~lv~eiq~vyr~qgv 1360 (1504)
T d1smyd_ 1281 RIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGV 1360 (1504)
T ss_dssp EECCCSSCCCEEEECSSCEEEECCCTTCCCCCCTTCEECTTCBCSSSBCCHHHHHHHHCHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCEEEEECCCEEECCCEECCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 99854771699985798079998489986897489999469872158999899988509999999999987787763475
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1361 ~i~dKhievi~rqml~~v~i~d~gdt~~~~ge~v~~~~ie~~~~~~~~e~~~~~t~~g~llgITr~gl~~~s~Ls~ASFe 1440 (1504)
T d1smyd_ 1361 KLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQ 1440 (1504)
T ss_dssp CCCHHHHHHHHHHHTCEEEESSCSSSCSSCCEEHHHHHHHHHHHHHTSCSCCCCCEEECCCCHHHHHHTCSCHHHHTTST
T ss_pred EECCCCEEHHHHHHCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCEECEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 76355010787752122699968975202555455564999999999809982224518860030722243799883024
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------~ 1717 (1815)
.
T Consensus 1441 eT~~vL~~AAi~g~~D~l~GvsEnVI~G~liP~GTG~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 1504 (1504)
T d1smyd_ 1441 NTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA 1504 (1504)
T ss_dssp THHHHHHHHHHHTCEEECCSHHHHHHTTCCCSSSTTCTTTSSCEEEEHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHCHHHHHHHHHHCC
T ss_conf 1779999999846977676800877277976677794477667751443301057778775229
|
| >d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta-prime domain: RBP1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=110976.41 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~p~~~i~~i~f~~~s~eeIr~~S~~ei~~~~~~~~~~~~p~~~Gl~d~rlG~~~~~~~C~tC~~~~~~CpGHf 80 (1449)
T d1twfa_ 1 VGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHF 80 (1449)
T ss_dssp CCCSCCCSCBCCCCEEECCBCCHHHHHHTCCCCCCCSCCSCTTSCCSCCSSSSCSSSCCCTTCCCSSSCCCCTTSCCCCC
T ss_pred CCCCCCCCCCCEECEEEEEECCHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99878867656406679992589999985356980778562899999999976663389998699989998774999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 GhIeL~~PV~h~~f~~~~~~~L~~~C~~C~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1449)
T d1twfa_ 81 GHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQL 160 (1449)
T ss_dssp CCEEEEEEEECGGGHHHHHHHHHHBCTTTCCBSCCTTSHHHHHHHTCCSHHHHHHHHHHHHTTCCBCCSEECCSSCTTSC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH
T ss_conf 75672662543899999999999852105778516638999988753056655678998742314300001001325666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~~~~~l~~~~~~~~p~~~~l~~lpV 240 (1449)
T d1twfa_ 161 VSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPV 240 (1449)
T ss_dssp EECCSCCCBCCCCEECSSCEEEEECSSSSCTTSCSCEEEEECHHHHHHHHTTSCHHHHHHTTCBTTTBCGGGGEEEEECC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHEEEEEEEC
T ss_conf 52378776774343334777778877532034453543148999999999738886898747886789867887662336
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~P~~~RP~~~~~~~~~~~~dlt~~~~~Ii~~n~~l~~~~~~~~~~~~~~~~~~~LQ~~v~~~~dn~~~~~~~~~~~~~~~ 320 (1449)
T d1twfa_ 241 PPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRP 320 (1449)
T ss_dssp CCTTTSCCCCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHCCCSSCCCCCSSCTTCC
T ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCC
T ss_conf 99876871694898626786899999999999999999873995778999999999999984355656884000466777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~k~i~~~L~gK~GrfR~nl~GKRVd~s~RsVI~pdp~l~~~evGvP~~~A~~Lt~pe~v~~~n~~~l~~~v~ng~~~~pg 400 (1449)
T d1twfa_ 321 VKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG 400 (1449)
T ss_dssp CCCSTTSCTTTTTTSSGGGTTCSCCSEEEEEEEECTTSCTTEEEEEHHHHTTCEEEEECCTTTHHHHHHHHHHTTTSSSC
T ss_pred CCCHHHHHCCCHHHHHHHCCCCCCCCCCCEEECCCCCCCEEECCCHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCCCCC
T ss_conf 62066675161044321126553366653045258753100121189999618978254089999999999708744776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 a~~~~~~~g~~~~l~~~~~~~~~~l~~g~~V~r~l~~gd~Vl~NRqPtLHr~si~a~~~~v~~~ktirl~~~vc~~yNAD 480 (1449)
T d1twfa_ 401 AKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNAD 480 (1449)
T ss_dssp EEEEECTTCCEEETTSCTTTTCCCCCTTCEEEEECCTTCEEEEECSSCCSGGGEEEEEEEEESSSSEEECGGGHHHHTCC
T ss_pred CCCEECCCCCEEEEECCHHHHHHHCCCCCEEEEEEECCEEEEECCCCCHHHHCCCCCEEEEECCCEEEECCCCCCCCCCC
T ss_conf 20000046726988511122211036663899997247068954764133311012246861485478521101111455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 FDGDeMnvhvPqs~~A~aEa~~Lm~~~~nilsp~~G~pi~~~~QD~~lg~y~LT~~~~f~~~~~~~~~~~~~~~~~~~~~ 560 (1449)
T d1twfa_ 481 FDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIP 560 (1449)
T ss_dssp SSSCEEEEECCCSHHHHHHHHHHTBGGGGSEETTTTEESCCCCHHHHHHHHHHHSTTCEEEHHHHHHHHHHSTTCCSCCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 45654789716888899999998641325346667862431021304231201136445789999999973545465446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~p~~~~~~~~~tgkqi~s~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~g~l~~g~l~k~~~g~~~~~li~~i~~~~G~~~ 640 (1449)
T d1twfa_ 561 TPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQV 640 (1449)
T ss_dssp CCSBCSSSCEEEHHHHHHHHSCTTCCEEECCTTCCTTCTTCCSEEEETTEEEESCCCHHHHSSCTTSHHHHHHHHHCHHH
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEECCEEEECCCHHHHCCCCCCCCCCCCCCCCCHHH
T ss_conf 87077632012564689997268730232157862115677659987786664310264416543452000000003799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~l~~~~~l~~~~l~~~Gfs~gi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~ 720 (1449)
T d1twfa_ 641 CAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRF 720 (1449)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBCCCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999888778999998652100521212442046888888888766578899999876641356872789999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~~~~~~~~~~~~~~~~~~~N~~~~M~~SGakGs~~n~~Qi~g~~Gqq~~~g~ri~~~~~~r~lp~f~~~~~~~~~~GfI~ 800 (1449)
T d1twfa_ 721 LNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVE 800 (1449)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHTSSCCHHHHHHHHSCCEECCBTTBSCCCCBTTBSSTTSCTTCCSTTTTTEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998766440255267641211457831468887665332015753554666666666788999813267603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~sf~~GL~p~Eyf~h~~~gReGLiDTAvkTa~sGYl~RrLvk~ledv~v~yD~tvr~~~g~IiQf~YGeDg~d~~~~e~~ 880 (1449)
T d1twfa_ 801 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQ 880 (1449)
T ss_dssp SCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECTTSCEECTTCCEEESSGGGTTBCGGGEEEE
T ss_pred CHHHHHHCCHHEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 23554112021254312302113332025464088999999975575997468667689559999975755431178875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~i~~~~~~~l~~~r~~l~~~~~~~~~~~~~p~~~~ 960 (1449)
T d1twfa_ 881 SLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIR 960 (1449)
T ss_dssp ECGGGSSCHHHHHHHHCCCTTCTTTSCCTTTBTTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEESCHH
T ss_pred ECCEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 31424252487665500000465444575676545777411888888789999998878889987157543435760099
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 1040 (1449)
T d1twfa_ 961 RIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQA 1040 (1449)
T ss_dssp HHHHHHHHHTTCCTTSCBCCCHHHHHHHHHHHHTTCCSCCCCSHHHHHHHHHTTHHHHHHHHHHSCHHHHHHTSCCCHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHCCCCCCEEEEEECCCCCHHHHHHHCCCCHHH
T ss_conf 99986455410255764445489999988888764301014311223330154200222001432023434443668999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1041 ~~~~~~~~~~ky~~slv~pGEaVGiiAAQSIGEP~TQmTLnTFH~AG~~~~nvT~GiPRl~EIl~ask~iktp~~~v~l~ 1120 (1449)
T d1twfa_ 1041 FDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1120 (1449)
T ss_dssp HHHHHHHHHHHHHHHBCCTTCCHHHHHHHHHHHHHTTCCC----------CCSCCHHHHHHHHTTTCSSCSSCEEEEEBC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHEEEECCCCCCCEEEEEC
T ss_conf 98899888888766455136751212122216613355554322112443001355043332222002567862157740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1121 ~~~~~~~~~~k~~~~~i~~~~l~~vv~~~~v~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~ilrl~l~~~~ 1200 (1449)
T d1twfa_ 1121 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAA 1200 (1449)
T ss_dssp SSSSSCHHHHHHHHHHHSCEEGGGTEEEEEEEECCCSSSCSSGGGHHHHHTSSCC----------CCCSEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHEEEEEECCCEEEEEEEEECCCCCEEEEEEECCEEEEEEEECCCHHEEEECCCCCCEEEEEECHHH
T ss_conf 22103599988665314663001046645999737773389987513436777842512202301357723899971555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1201 ~~~k~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~l~~~~v~Gi~~I~r 1280 (1449)
T d1twfa_ 1201 MNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIER 1280 (1449)
T ss_dssp HHHTTCCHHHHHHHHHHHHGGGEEEEECCTTSSSCEEEEEEC----------CCTTHHHHHHHHHHHHHCEEESCTTCCC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCEEE
T ss_conf 14678877887899998608985899468886447885366775321000365668999987741338808707888479
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1281 v~i~~~~~~~~~~~~~~~~~~~~vl~teG~nl~~~l~~~~iD~~~~~sNdI~dil~~lGIEAar~~ii~EI~~V~~~~Gi 1360 (1449)
T d1twfa_ 1281 VVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGS 1360 (1449)
T ss_dssp EEEEEEEEEEECTTSSEEEEEEEEEEEESCCHHHHTTSTTBCTTTCBCSCHHHHHHHHCHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEECCCCEEECCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99962465341788737258709998683878888606991642074086999999772999999999999999986595
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1361 ~Id~rHi~LIad~MT~~G~~~~i~R~gi~~~~~S~l~~aSFEeT~~vL~~AAi~g~~D~L~G~senIi~G~~ip~GTG~f 1440 (1449)
T d1twfa_ 1361 YVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAF 1440 (1449)
T ss_dssp CCCHHHHHHHHHHTTTBSSCCCSSSCSSSCSSCCTTSSCCSSCSHHHHHHHHHHTCEECCCSHHHHHHTTCCCSSGGGSS
T ss_pred EECHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCCHHHEECCCCCCCCCCCC
T ss_conf 88799999999997758857101189814698589887006439999999996399142788078702689889865162
Q ss_pred --------C
Q ss_conf --------9
Q 000235 1717 --------A 1717 (1815)
Q Consensus 1717 --------~ 1717 (1815)
-
T Consensus 1441 dll~d~~~l 1449 (1449)
T d1twfa_ 1441 DVMIDEESL 1449 (1449)
T ss_dssp EEEECSCCC
T ss_pred EEEECHHHC
T ss_conf 888665319
|
| >d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId: 10891]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Reovirus polymerase lambda3 species: Reovirus [TaxId: 10891]
Probab=100.00 E-value=0 Score=96757.28 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~alsG~~pltd~iFe~Aa~~~~~~pRS~~Y~lLD~i~Fs~~~v~~iP~~Iy~~~~~s~y~~i~~~n~v 80 (1264)
T d1muka_ 1 SSMILTQFGPFIESISGITDQSNDVFEDAAKAFSMFTRSDVYKALDEIPFSDDAMLPIPPTIYTKPSHDSYYYIDALNRV 80 (1264)
T ss_dssp CTHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHHSCHHHHHHHHHTSCCCGGGCCCCCGGGTCCCCGGGGEEECTTCCE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCCEE
T ss_conf 95146420368898548876606799998877530508778988603866775122589400258873774466355428
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 rr~t~~~pdDvyvpN~~i~~ll~pl~tip~YG~L~~~Ie~~A~~g~~sAR~Astfykia~SQARQVK~~~~rfl~~LLl~ 160 (1264)
T d1muka_ 81 RRKTYQGPDDVYVPNCSIVELLEPHETLTSYGRLSEAIENRAKDGDSQARIATTYGRIAESQARQIKAPLEKFVLALLVA 160 (1264)
T ss_dssp EECCSSCTTCCSCCCCCCGGGEEECSSCTTEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHTCBSSCHHHHHHHHHHH
T ss_pred EECCCCCCCCEECCCCCCHHHCCHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 72576798754316886153234222167655106634234002671467888898787876544068989999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~a~p~v~~~~~~d~~~~p~~~~s~aL~~i~qI~q~~~~~~~~~aP~L~v~sG~~W~~~P~~~~~v~~LltDLiNLAI~~~ 240 (1264)
T d1muka_ 161 EAGGSLYDPVLQKYDEIPDLSHNCPLWCFREICRHISGPLPDRAPYLYLSAGVFWLMSPRMTSAIPPLLSDLVNLAILQQ 240 (1264)
T ss_dssp HTTCSCEETTTTEECCCCCGGGCHHHHHHHHHHHHHHTTCSCCCSEEECSSCEEEECCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 30788888546789889996658128999999998127876668548953761685187754323089999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~t~~sp~L~~~av~v~l~AA~s~sY~h~lL~~KsiFP~~slhsMyr~~~gG~~P~ieW~EPRS~Y~F~~~Gv~~l~~~~~ 320 (1264)
T d1muka_ 241 TAGLDPSLVKLGVQICLHAAASSSYSWFILKTKSIFPQNTLHSMYESLEGGYCPNLEWLEPRSDYKFMYMGVMPLSAKYA 320 (1264)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHSSCHHHHHHHHTTHHHHTTGGGCCSSCCEEEEEEEEECSSGGGCBEEEEEEEECCGGGS
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEEEECCCCCC
T ss_conf 75488088887789887752374057899875032621238999871478767752003766654279963453244656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~aPs~d~~a~~l~~~ygl~dv~~~i~~m~~~~~~H~~dsvrfVRD~ma~tSGmylvRqPT~sVL~EYsQ~P~Ik~PIP~ 400 (1264)
T d1muka_ 321 RSAPSNDKKARELGEKYGLSSVVGELRKRTKTYVKHDFASVRYIRDAMACTSGIFLVRTPTETVLQEYTQSPEIKVPIPQ 400 (1264)
T ss_dssp CCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHTCCEESHHHHHHHHHHHTSSCCCBCCCCHHHHHHHHSSCCCCCSSCCCG
T ss_pred CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCH
T ss_conf 67998637899998861678889999987404765664136889888875266068538608999974359876788982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 s~WtgpiGn~ryl~d~~~~pa~~Ly~tW~~AA~~va~dp~t~DPl~QaImrsQyVTaRGGSgaaLk~aL~~~~v~LP~f~ 480 (1264)
T d1muka_ 401 KDWTGPIGEIRILKDTTSSIARYLYRTWYLAAARMAAQPRTWDPLFQAIMRSQYVTARGGSGAALRESLYAINVSLPDFK 480 (1264)
T ss_dssp GGEEEEETTEEEECTTCCSTHHHHHHHHHHHHHHHHHCGGGGCHHHHHHHHHTTCSSSCCCHHHHHHHHHTTTCCCCCCT
T ss_pred HHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 32378766347605333356899999999999998509765587899987620531578861889999987360167889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 g~~VK~ssKIyQaAQ~A~~pF~~l~~aI~a~vsmgirNQVQRR~RsIMPlnv~QQ~vSapHTL~AnYIN~HMNlStTSGS 560 (1264)
T d1muka_ 481 GLPVKAATKIFQAAQLANLPFSHTSVAILADTSMGLRNQVQRRPRSIMPLNVPQQQVSAPHTLTADYINYHMNLSPTSGS 560 (1264)
T ss_dssp TCCSCSSSHHHHHHHHTTSCHHHHGGGGGSCEECEEEEEBTEEEEEECBCCHHHHHHHHHHHHHHHHHHHHTSBCCCCCS
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 97345778899898870685156679887767788788876355333676545765156446788888876066777774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 aV~dKViPL~lYAStPP~~~vNvDIkACDASITy~yFLsvI~gAmHeG~~~~~~~~~FMgVPsSi~~d~~~~~~~~srpi 640 (1264)
T d1muka_ 561 AVIEKVIPLGVYASSPPNQSINIDISACDASITWDFFLSVIMAAIHEGVASSSIGKPFMGVPASIVNDESVVGVRAARPI 640 (1264)
T ss_dssp SGGGSCHHHHHHHHSTTCEEEEEEEETHHHHSCTTTHHHHHHHHHHHHTHHHHTTCCBTTBCCEEEEECCSSSCCEEEEE
T ss_pred CEEEEEEEEEEECCCCCCCEEEEEEHHCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCC
T ss_conf 02101341256526897535751000033230099999999988750101478887625898123012335677556763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 SGlQ~M~QhLa~lY~~GF~Y~V~D~FS~GN~Ft~~TtTFPSGSTaTSTEHTANNstMm~~FL~v~~P~h~~s~~lkr~~k 720 (1264)
T d1muka_ 641 SGMQNMIQHLSKLYKRGFSYRVNDSFSPGNDFTHMTTTFPSGSTATSTEHTANNSTMMETFLTVWGPEHTDDPDVLRLMK 720 (1264)
T ss_dssp CHHHHHHHHHHHHHHHCEEEEEECSSSTTCEEEEEECCCCSBSSSHHHHHHHHHHHHHHHHHHTHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 57999999999999668736705777898743344556789874554200256358999999853853358878999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~mtIQrnYVCQGDDG~lii~~~~a~kis~e~~~e~l~~l~~Yg~~FGW~YDId~s~~AEYLKLy~l~GcRIPN~SRHP~v 800 (1264)
T d1muka_ 721 SLTIQRNYVCQGDDGLMIIDGTTAGKVNSETIQNDLELISKYGEEFGWKYDIAYDGTAEYLKLYFIFGCRIPNLSRHPIV 800 (1264)
T ss_dssp TCCTTTTEEEETTEEEEEECCBTTBSCCHHHHHHHHHHHHHHHHTTTCEEEEECSSCEEETTEEEETTEEECCGGGSCSS
T ss_pred HCCHHCCEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 41210052651587048627733466798999999999998521138345325588199999999816757887679987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 GKE~As~~t~EiwPslidi~~G~f~NGV~D~l~Wr~WlRfsWA~ac~~Sr~~~~~g~s~~~~QYP~WsFVY~GlPpi~~~ 880 (1264)
T d1muka_ 801 GKERANSSAEEPWPAILDQIMGVFFNGVHDGLQWQRWIRYSWALCCAFSRQRTMIGESVGYLQYPMWSFVYWGLPLVKAF 880 (1264)
T ss_dssp BCCCCSSSCCCCTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSEEEEEETTEEEEEECCHHHHHHTTCCCSSCT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 63347887666457899998764311322343299999999999999717888778743200262001232168840057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 G~~P~i~S~yMP~GD~gmfsil~~~R~l~t~~~~~~~~p~~~~~~v~g~aD~~~l~~~~~vY~GY~~AQ~pR~P~~s~~~ 960 (1264)
T d1muka_ 881 GSDPWIFSWYMPTGDLGMYSWISLIRPLMTRWMVANGYVTDRCSTVFGNADYRRCFNELKLYQGYYMAQLPRNPKKSGRA 960 (1264)
T ss_dssp TCCTTCBCTTCCSHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTTEEECHHHHHHHTTHHHHHHHHTSCSSCC-----
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99974343146887416999998778988752015778766887754557707788666566657887576899888776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 961 a~~~sveq~t~aLs~YL~~dp~Lk~RV~~Gr~~W~~~~~~~~~~~PSL~DVp~kW~~a~reA~~p~~s~i~~M~~~l~ra 1040 (1264)
T d1muka_ 961 ASREVREQFTQALSDYLMQNPELKSRVLRGRSEWEKYGAGIIHNPPSLFDVPHKWYQGAQEAAIATREELAEMDETLMRA 1040 (1264)
T ss_dssp ---CHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHTBTTBSCCCCGGGHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 79799999999999887408899999874357798614677889972420645777500014579868999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1041 ~r~~~~~FSkLLe~Yl~V~~~l~~p~~~avDp~vP~~AG~dp~N~dp~~K~~slGpi~qsTrkYF~~tLFv~rtVSGLDV 1120 (1264)
T d1muka_ 1041 RRHSYSSFSKLLEAYLLVKWRMCEAREPSVDLRLPLCAGIDPLNSDPFLKMVSVGPMLQSTRKYFAQTLFMAKTVSGLDV 1120 (1264)
T ss_dssp HHSCCSCCCHHHHHHTTEEEEEEEECCCSSCTTCCSBTTBSTTSHHHHHHHHHHCBCCBCHHHHHGGGCSCSCCCTTSCH
T ss_pred HHCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHEEEEEECCCCCH
T ss_conf 72453558999987643678516886657699986415778777886057754064067789875541122100046547
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1121 eaVDaaLLRl~~LgA~~~a~~A~L~~iGms~sEA~~iA~~I~l~d~q~VQlaRvVnLsvP~sWMtldfd~~i~~h~~~~~ 1200 (1264)
T d1muka_ 1121 NAIDSALLRLRTLGADKKALTAQLLMVGLQESEADALAGKIMLQDVNTVQLARVVNLAVPDTWMSLDFDSMFKHHVKLLP 1200 (1264)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTCCHHHHHHHHHHHHHCCCCHHHHHGGGTCCCCGGGTTBCHHHHHHHSEECSC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHEEECCCCCHHEECCCHHHHHHHCCCCC
T ss_conf 88899999998608988999999975356467798887675223113544533041246830302250566776404579
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------~ 1717 (1815)
.
T Consensus 1201 ~~i~~~st~~~~~~~W~~~IL~~L~a~~aMt~~Gpv~~~yv~~i~Gg~~sl~~~fr~WMRae~r 1264 (1264)
T d1muka_ 1201 KDGRHLNTDIPPRMGWLRAILRFLGAGMVMTATGVAVDIYLEDIHGGGRSLGQRFMTWMRQEGR 1264 (1264)
T ss_dssp TTSCCTTTCCCTTCTTHHHHHHHHHHHHHHHBSSSCEEEEEEEETTHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf 9877755457754546999999974455343224510247752147288899999999885259
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=92328.36 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~ 80 (1207)
T d1u6gc_ 1 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ 80 (1207)
T ss_dssp CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 96169999986679887299999999999872301445768899999999999679987999999999999997676866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~ 160 (1207)
T d1u6gc_ 81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 160 (1207)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999998568963265999999999999663200231127889999999998763477778999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~ 240 (1207)
T d1u6gc_ 161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 240 (1207)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 75676687799999999988089998999999999999998779987999999999987059988999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~ 320 (1207)
T d1u6gc_ 241 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 320 (1207)
T ss_dssp HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 76154677799999999988258617778999999999998674654455999999999987407300034678877655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~ 400 (1207)
T d1u6gc_ 321 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 400 (1207)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 54011013566788875220133899999999998689888999999999999999998459854899999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~ 480 (1207)
T d1u6gc_ 401 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 480 (1207)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 30321255515488876302699999876999999999864886567888999999999972257777667567899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~ 560 (1207)
T d1u6gc_ 481 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560 (1207)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 76026416888999999999987226788999987633468888712308899999999998898750001102554478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~ 640 (1207)
T d1u6gc_ 561 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKID 640 (1207)
T ss_dssp HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 89999999999987313101788989999998988765565888888877788874230457999999999987313214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~ 720 (1207)
T d1u6gc_ 641 LRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 720 (1207)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 78999888889877501443889999999999999845421006777667776324443440788999999988888626
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i 800 (1207)
T d1u6gc_ 721 PSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCV 800 (1207)
T ss_dssp GGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 33446678888999999860823555469999999999986066654449999999875125430345788999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l 880 (1207)
T d1u6gc_ 801 AALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSI 880 (1207)
T ss_dssp HHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99998632667999999999884342259999999999999998525311599999999980899889999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 ~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~ 960 (1207)
T d1u6gc_ 881 SVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP 960 (1207)
T ss_dssp HHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 97628887599999872473589999999999998545554687899999999988179718799999999998870278
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 961 ~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~ 1040 (1207)
T d1u6gc_ 961 ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRD 1040 (1207)
T ss_dssp GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99999999985799999999999999999986655467899999999999867999899999999999999848698999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1041 ~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d~~di~~~~ 1120 (1207)
T d1u6gc_ 1041 LLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLT 1120 (1207)
T ss_dssp GHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999851256430345058951105885899999999999999875502589999999985356548899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1121 ~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1200 (1207)
T d1u6gc_ 1121 FLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQIS 1200 (1207)
T ss_dssp HHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSSSSCCCCCHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999869387899999999999999701667350430167799999999999999973898545837999999987
Q ss_pred ------C
Q ss_conf ------9
Q 000235 1717 ------A 1717 (1815)
Q Consensus 1717 ------~ 1717 (1815)
.
T Consensus 1201 ~~~~~~~ 1207 (1207)
T d1u6gc_ 1201 SNPELAA 1207 (1207)
T ss_dssp HHHHHTC
T ss_pred HCHHCCC
T ss_conf 3913129
|
| >d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta domain: RBP2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=92326.02 Aligned_cols=1 Identities=0% Similarity=-2.022 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~d~w~~i~~~f~~~~Lv~~qidSFn~Fi~~gi~~Ii~~~~pi~~~~~~~~~~~~~~~~~~~~l~f~~i~i 80 (1207)
T d1twfb_ 1 FEDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYV 80 (1207)
T ss_dssp CCCTTCCCCTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 98667988878889879998689986089899999999878799998509757631555555446788569999989998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~kP~~~e~~g~~~~l~P~EcR~r~lTYs~~l~v~i~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~v~iG~IPIMv~S~ 160 (1207)
T d1twfb_ 81 TKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSK 160 (1207)
T ss_dssp EEEEECCSSSCCEECCHHHHHHTTCCCEEEEECCEECCCCC-------------------------CCEEEEEECCTTST
T ss_pred CCCEEECCCCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEEEEECCEEECCC
T ss_conf 38837707886265698999840995131799999999974035665411100023455553156208997788780888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~C~L~~~~~~~l~~~gEc~~D~GGYFIING~EKVIi~Q~r~~~n~~~v~~~~~~~~~~~~~~irS~~~~~~~~~~~~~~~ 240 (1207)
T d1twfb_ 161 NCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVK 240 (1207)
T ss_dssp TSGGGTCCHHHHHHTTCCTTCCCCSEEETTEEEEECEEEEECSSCCEEEECCTTSSEEEEEEEECCCSSSCCCCCEEEEE
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCEEEECCEEEEEEEEEECCCCEEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEE
T ss_conf 54489969899987289977898179989999999999746997699997479993699999999927997343799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~i~~~~~~~~~~IPl~illrALG~~sD~eI~~~i~~~~~~~~~~~~l~~~~~~~~~~~t~e~al~yig~~ 320 (1207)
T d1twfb_ 241 LYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRR 320 (1207)
T ss_dssp EESCSSCSSCCEEEECTTCSSCEEHHHHHHHTTCCSHHHHHHHHCCCTTCHHHHHHHHHHHHHTTTCCSHHHHHHHHHHT
T ss_pred EEECCCCCCEEEEEEEEHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98718865369999951010453188889873885104346440467301678999888876301046688999998763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~iL~~~llpHl~~~~~~~~~K~~~L~~mi~kll~~~~g~~~~dd~D~~~nkrv~~~G~Ll~~~f 400 (1207)
T d1twfb_ 321 GTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLF 400 (1207)
T ss_dssp TSCTTSCHHHHHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 12558874426899999987530123465432025678889999988777651446776345541004542789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~it~~i~~~~~TGn~~~~~~~~~~~~G~sq~l~r~n~l~~lSh~Rr 480 (1207)
T d1twfb_ 401 KTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 480 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCC--------CCCCTHHHHHHHHHHHHHCCCC---------CCCEEECCCSSHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHC
T ss_conf 99999988888764001112233567345332670779999987507644344554434302223330479899886441
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 v~~~~~~~~k~~~~R~Lhps~~G~iCPveTPEG~~~GLv~~La~~a~i~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 560 (1207)
T d1twfb_ 481 TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDA 560 (1207)
T ss_dssp EECCC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCHHHHHHHHHTTCEEGGGCCGGGCTTC
T ss_pred CCCCCCCCCCCCHHHHCCHHHCCCEEEEECCCCCCCCCEECCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEECCCCCC
T ss_conf 46776555555315333664454210024789875343213421465303664202567751358632024420105653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~V~~nG~~~G~~~~~~~l~~~lr~~R~~g~i~~~~s~~~~~~~~~i~i~td~Gr~~rPlfi~~nd~~~~~~~~~mqrq~ 640 (1207)
T d1twfb_ 561 TRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGH 640 (1207)
T ss_dssp EEEEETTEEEEEESCHHHHHHHHHHHHHHTSSCTTCEEEEETTTTEEEEECCSCCEEEEEEEEECCCTTSSCEESCCHHH
T ss_pred CEEEEEEEEEEEECCHHEEEHHEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCCCCEEECCHHHHCCCCEEEEHHH
T ss_conf 10332012789970010110003564541676623444320345532899447655677344405223045443556766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 v~~l~~~e~~~v~~~~e~~~~~~~~~~~~~g~ieyid~~E~~~~~Ia~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1207)
T d1twfb_ 641 IAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATT 720 (1207)
T ss_dssp HHHHHHHHHCC---------CCCHHHHHHTTSEEEEEHHHHTTCCEESSGGGGCC---------CCCTTSCCCCCCCCSC
T ss_pred HHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEECCHHCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHEEEECCCCC
T ss_conf 76541320112556631112125410045771355400004638999623324422355445544552132011024554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~th~Ei~p~~ilg~~as~iPf~~hNqSpRn~yq~qm~KQa~G~~~~~~~~r~D~~~~~l~~pQ~Plv~t~~~~~~~~~e~ 800 (1207)
T d1twfb_ 721 FTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFREL 800 (1207)
T ss_dssp CCEECSCGGGGSCTTGGGSSSGGGSCHHHHHHHHHHGGGBCBCSCTTTTTCCCSEEEEESSCBCCSEECTTHHHHTTTTS
T ss_pred CCCCCCCCCEEEEEECCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCEEECCCHHHHHHHCC
T ss_conf 32222366127753120687312344564011034774567721134423303554067417872250020011122115
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 p~G~N~iVAvmsy~GYN~EDAiIiNk~si~rG~f~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ld~dG 880 (1207)
T d1twfb_ 801 PAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDG 880 (1207)
T ss_dssp CCCEEEEEEECBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEEECCCCSCTTCCCEESCCCCSSSCBCCSSCGGGCCTTS
T ss_pred CCHHCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 20005289998045765554432356663203121223578998821366632211456544554333211121065212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 i~~~G~~v~~gdilvgk~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~V~~v~~~~~~~~~~~~kv~i~~~R~p~iG 960 (1207)
T d1twfb_ 881 LIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIG 960 (1207)
T ss_dssp BCCTTCEECTTCEEECEECCCC-------------CCBBCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEEEECCCTT
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCHH
T ss_conf 01332114689531345410478601210011122345256882379973789999720256420124999987316215
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 961 DKfasRhGqKGv~s~i~p~eDMPf~~dG~~pDiI~NP~g~PSRMtiGql~E~~~gk~~~~~g~~~d~t~F~~~~~~~~~~ 1040 (1207)
T d1twfb_ 961 DKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISK 1040 (1207)
T ss_dssp CEEECTTSCEEEEEEEECTTTSCEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHHHHCSCEECCSSSSCCHHHHHH
T ss_pred HHHHHCCCCCCEEEEEECHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 56642257751344341366399488999861887898676667199999998778887349855558879965899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1041 ~L~~~g~~~~G~e~ly~G~tG~~~~~~i~~G~~yy~rL~HmV~DK~~~Rs~Gp~~~lT~QP~~Gr~~~GG~R~GEME~da 1120 (1207)
T d1twfb_ 1041 LLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDC 1120 (1207)
T ss_dssp HHHTTTSCTTSEECEECTTTCCBCSSCEEEEEEEEEEBSSCGGGTCEEECCCC----------------CCCCCHHHHHH
T ss_pred HHHHCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHHH
T ss_conf 99986999899989888999988146089865475431335252657644289976256999865467884204688899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1121 l~a~Gaa~~L~e~l~~~SD~~~~~vc~~cg~~~~~~~~~~~~~~c~~c~~~~~i~~~~iPy~fk~l~~EL~sm~i~~~l~ 1200 (1207)
T d1twfb_ 1121 MIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLY 1200 (1207)
T ss_dssp HHHHTCHHHHHHHHCCSSCCCEEEEESSSCSSCCEEETTTTEEEBTTTTBSSSEEEEECCHHHHHHHHHHHHTTBCCEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99975999999986556885405300267745787415435306157878887361578889999999998788846999
Q ss_pred ------C
Q ss_conf ------9
Q 000235 1717 ------A 1717 (1815)
Q Consensus 1717 ------~ 1717 (1815)
-
T Consensus 1201 ~~~~~~~ 1207 (1207)
T d1twfb_ 1201 TDRSRDF 1207 (1207)
T ss_dssp SCSSCCC
T ss_pred ECCCCCC
T ss_conf 5676649
|
| >d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex virus 1 [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Viral ssDNA binding protein superfamily: Viral ssDNA binding protein family: Viral ssDNA binding protein domain: Infected cell protein 8, ICP8 species: Herpes simplex virus 1 [TaxId: 10298]
Probab=100.00 E-value=0 Score=85783.46 Aligned_cols=1 Identities=100% Similarity=0.835 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~v~ap~GP~gyvY~~~~~~~~~eels~L~~~~~~s~v~i~PLL~gLTVE~~F~~nVkav~~~~~~g~~~~~~s~kLt~s 80 (1122)
T d1urja_ 1 TTIKVPPGPLGYVYARACPSEGIELLALLSARSGDSDVAVAPLVVGLTVESGFEANVAVVVGSRTTGLGGTAVSLKLTPS 80 (1122)
T ss_dssp CCBCCCEECSEEEEEEECCSSTHHHHHHHSBCBTTCSCEEEECCBTTTBCTTCCCEEEEEEEEEEC-----CEEEEEEEE
T ss_pred CEEECCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCEECCCCCCCEEEEEECCCCCCCCEEEEEEEECC
T ss_conf 90333788779999976787778999997467999971774102585246887312566430266884653578875025
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~f~p~vfvFHn~~~i~p~~~~p~L~~LC~eaR~~FG~~~f~p~~~~~~~~t~~~~lC~~lg~dp~~~~~~vVvtegFKE~ 160 (1122)
T d1urja_ 81 HYSSSVYVFHGGRHLDPSTQAPNLTRLCERARRHFGFSDYTPRPGDLKHETTGEALCERLGLDPDRALLYLVVTEGFKEA 160 (1122)
T ss_dssp EBCSEEEEEECGGGSCCSBCCCCHHHHHHHHHHHHTCCCCCCCGGGGGGCCCHHHHHHHHTCCTTSEEEEEEEBTTTHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHEEEEEEECHHHHHH
T ss_conf 56862799979840676356889899999999975977678986556687887886332089977978999972557889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 lY~g~lv~~~~~~~~V~I~~~~~~rIPLYp~~LF~~d~~r~~~~pf~~~~~~~~e~~~~~~~Fyn~~Ls~~L~~~v~t~~ 240 (1122)
T d1urja_ 161 VCINNTFLHLGGSDKVTIGGAEVHRIPVYPLQLFMPDFSRVIAEPFNANHRSIGEKFTYPLPFFNRPLNRLLFEAVVGPA 240 (1122)
T ss_dssp HHTTCEEECGGGCEEEEETTEEEEEEEEEEGGGGSTTCCSCCSSTTCTTCTTSCTTCCCCCBCCCHHHHHHHHHHTHHHH
T ss_pred HHCCCEEEECCCCEEEEECCEEEEEECCCCHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 87167577026636999988768980788989838752000047432222234433345767666789999999887457
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 aqaLRvr~v~~li~a~~~q~~~D~~~~akL~~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~m~~d~a~s~~~ 320 (1122)
T d1urja_ 241 AVALRSRNVDAVARAAAHLAFDENHEGAALPADITFTAFEASQGKTPRGGRDGGGKGAAGGFEQRLASVMAGDAALALES 320 (1122)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHCTTCCSCCSCTTCCEECC-------------------CCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHEEECCHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 66002234999999999854221033032277632414553446776544333332223304567899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~s~ye~~p~d~~~WPif~~~et~~drl~aL~~~~a~la~hV~A~vFS~NSvLY~t~V~~~~~~~~~~~~~~~~~rf~ 400 (1122)
T d1urja_ 321 IVSMAVFDEPPTDISAWPLFEGQDTAAARANAVGAYLARAAGLVGAMVFSTNSALHLTEVDDAGPADPKDHSKPSFYRFF 400 (1122)
T ss_dssp HHHTSCCSSCCCBGGGCGGGSSTTSSSTTHHHHHHHHHHHHHHHHHHHHCTTBTTTEEEEEECCCC----CCSCCTTSEE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 75200345787773227740477898999999999999888786621002773589862034678898777761467899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~gl~~~~~~~~d~dg~~v~~~~g~p~~~~~g~~~~ft~~HLAyAc~fsPqLLAr~~~YL~rc~~~~~~~~~~~~~~~y 480 (1122)
T d1urja_ 401 LVPGTHVAANPQVDREGHVVPGFEGRPTAPLVGGTQEFAGEHLAMLSGFSPALLAKMLFYLERCDGAVIVGRQEMDVFRY 480 (1122)
T ss_dssp EEECTTTTTSCEECTTSCBCSTTTTCCCCCSSCSCCCCCHHHHHHHTTTCHHHHHHHHHHHTTCCCCSCC----CCHHHH
T ss_pred HHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 97184001563311367885577888776678888663999999997259999999999999755455578898628888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 V~~a~~s~~~C~lC~g~~~~~C~~T~f~Rlr~R~P~v~~~~Rr~p~V~t~~s~~ynD~D~LGnfa~f~~l~r~d~~~~~~ 560 (1122)
T d1urja_ 481 VADSNQTDVPCNLCTFDTRHACVHTTLMRLRARHPKFASAARGAIGVFGTMNSMYSDCDVLGNYAAFSALKRADGSETAR 560 (1122)
T ss_dssp HHTTTTSCCSCSSCCTTTTTTCHHHHHHHTGGGCCCCCCCSCCCEEEEEECCCSCCBCSTTCSCC---------------
T ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 64035888760014999862357889998874089987556789889981156640431104655445555556666765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~Ty~~~~~r~~~~L~~~g~~~~~~~~~~g~~~~~i~~~~~F~~~~~~i~~~Vd~e~~kf~~~l~e~r~~~~Re~i~ 640 (1122)
T d1urja_ 561 TIMQETYRAATERVMAELETLQYVDQAVPTAMGRLETIITNREALHTVVNNVRQVVDREVEQLMRNLVEGRNFKFRDGLG 640 (1122)
T ss_dssp ----CCHHHHHHHHHHHHHHTTSCCTTCTTCCTTHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 56776388899999999986474447788665543236568899999999999999999999999998745767255540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~h~~~l~~nPya~a~cPvl~~lyyRs~l~IlQdlAL~~c~~y~~dnp~~g~w~~~hfQ~v~~~f~~~~~~kGfLt~k~ 720 (1122)
T d1urja_ 641 EANHAMSLTLDPYACGPCPLLQLLGRRSNLAVYQDLALSQCHGVFAGQSVEGRNFRNQFQPVLRRRVMDMFNNGFLSAKT 720 (1122)
T ss_dssp TCEEEEEEECCTTSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHTTTTSSSEEEEE
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECEE
T ss_conf 52258873588744677899999999999999998766223489717850137899999999999876675475444314
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~kv~~~e~~~~~~~~~~a~~~~~~~~~~e~~l~r~~v~~~k~~rIKNRiiFsg~~~~~s~a~~~r~~~~~~~f~k~~k~~ 800 (1122)
T d1urja_ 721 LTVALSEGAAICAPSLTAGQTAPAESSFEGDVARVTLGFPKELRVKSRVLFAGASANASEAAKARVASLQSAYQKPDKRV 800 (1122)
T ss_dssp EEBCCC---CCCBCCTTTCSSSCCBTTCCCEESCCEEEEEEEEEEEEESCC-------------------CCCBCCSSCC
T ss_pred EEEEECCCCCCCCCCHHCCCCCCCCCEEEEEEEEEEECCCHHHEEECCEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 67873153101476000004784540136767776621215415624120378986400000000556556650665546
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~il~Gpl~flL~~~H~~LFP~~k~~~~~~~s~l~fW~~~~~nqlP~~~~~~e~~e~~~fv~~~S~~y~e~n~idv~P~~l 880 (1122)
T d1urja_ 801 DILLGPLGFLLKQFHAAIFPNGKPPGSNQPNPQWFWTALQRNQLPARLLSREDIETIAFIKKFSLDYGAINFINLAPNNV 880 (1122)
T ss_dssp CGGGSTTHHHHHHTHHHHSTTCCCTTCSSCCHHHHHHHHHHTCSCSSCSCTTHHHHHHHHHHHHHHHHHHCCCCSCCCSH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 74447199999999998689988787888768999999985569987774648999999985214520026000686139
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 ~~ya~~rl~N~iL~~cG~~qfyi~tl~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 960 (1122)
T d1urja_ 881 SELAMYYMANQILRYCDHSTYFINTLTAIIAGSRRPPSVQAAAAWSAQGGAGLEAGARALMDAVDAHPGAWTSMFASCNL 960 (1122)
T ss_dssp HHHHHHHHHHHHHHHTTCCSBCCCEEEEEEEEEESCSSSGGGGGGCSCCSTTHHHHHHHHHHTGGGCTTCCEEEEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf 99999999889998768864110335555404557888545563002577550268999999860677741566630036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 961 ~r~V~~~RpiVtv~~~I~KYtG~~Gn~~vFQ~GnlGyf~G~gv~r~L~~~~~~rr~v~atp~vg~l~k~s~~~~~~~e~~ 1040 (1122)
T d1urja_ 961 LRPVMAARPMVVLGLSISKYYGMAGNDRVFQAGNWASLMGGKNACPLLIFDRTRKFVLACPRAGFVCAASSLGGGAHESS 1040 (1122)
T ss_dssp HHHHHHTCCEEEEEEEEEEC--------CCEEEEEECCSSGGGTCTTCCCCTTEEEEEEECCBTTTBCCCCH--------
T ss_pred HHHHHCCCCEEEEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCHHH
T ss_conf 78886479748987688876323578745651432011268755666555550028995454251552145677510689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 1041 i~~~v~~il~~~~~~v~~~Vv~elvk~lG~~~~~lt~DD~~f~~~d~~l~~~~~~~~~~~~~~~~~~Ws~e~a~~~l~e~ 1120 (1122)
T d1urja_ 1041 LCEQLRGIISEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMELTARALERGNGEWSTDAALEVAHEA 1120 (1122)
T ss_dssp -HHHHHHHTTSCCSCHHHHHHHHHHTTSSGGGGGCCHHHHHHHSSCHHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999974799718999999998604244689888999984729999999999999986258987599999998752
Q ss_pred -C
Q ss_conf -9
Q 000235 1717 -A 1717 (1815)
Q Consensus 1717 -~ 1717 (1815)
.
T Consensus 1121 e~ 1122 (1122)
T d1urja_ 1121 EA 1122 (1122)
T ss_dssp C-
T ss_pred CC
T ss_conf 19
|
| >d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase family: RNA-polymerase beta domain: RNA-polymerase beta species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=85538.06 Aligned_cols=1 Identities=0% Similarity=-0.993 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~p~Lv~~Qi~Sfn~Fi~~~~~~~~~~~~gl~~~~~~~~pi~~~~~~~~~~~L~f~~~~~~~P~~~p 80 (1119)
T d1smyc_ 1 MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPFPQ 80 (1119)
T ss_dssp CCEEECCCCCCCSCCCCTTHHHHHHHHHHTCCSSCTTSSCCCHHHHHHHHHCCCCCCCSSSCCCCEEEEEEECCCCSSCH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCEECCCCCCCEEEEEEEEEEECCCCCCH
T ss_conf 97555467776789997789999999999876772132113058988763088123677776499998888981898999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~EcR~r~~TYs~~l~v~i~~~~~~~~~~~~~~v~iG~iPiM~~SGYFIInG~ErVii~Q~~~spn~~~~~~~~~~~~~~~ 160 (1119)
T d1smyc_ 81 DECREKDLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIA 160 (1119)
T ss_dssp HHHHHTTCCCEECCEEEEEECCSSSCCCCCCCCCCCCEECCCSSSCEECSSSEEEECEEEEECSSEECCCCSSSSSCCCC
T ss_pred HHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCEECCCCEEEECCEEEEEEEEEECCCCEEEEECCCCCCCEEE
T ss_conf 99985099601137999999999865699977999877889999569981708789989743798899946887887899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~IPi~illrALG~~~d~i~~~~~~~~el~~~~~~~~~~~~~~~~al~~~~~ 240 (1119)
T d1smyc_ 161 SIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFT 240 (1119)
T ss_dssp EECCSSSSSCCBEEEEETTTEEEEESSSSCCCHHHHHHHHTCCHHHHHHHTSSSCGGGGGTSSCHHHHTCHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCCEEEEEECCEEECHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99998689875999990898899998590776999999868998999998556189999887544421899999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~t~~~al~~i~~~f~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~ll~l~~g~~~~ 320 (1119)
T d1smyc_ 241 LLRPGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGH 320 (1119)
T ss_dssp HSSSCCCSCCTTHHHHHTTSTTTTCCSSTTTSSHHHHHHHSCSCCSTTTTCCCSSSCCCCTTHHHHHHHHHHHTSSCSSC
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 74568898699999977431255644441046679999996033125444434544011889999999999987068854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~Dd~D~~~nKRv~laG~Ll~~lfr~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~sq~~~~~~~ 400 (1119)
T d1smyc_ 321 EVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNP 400 (1119)
T ss_dssp CCCCTTSTTTEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSTTSCCSHHHHHHHHHHHHTCTTEEECCCSSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 32057777567888756799999999999887766544333013357855611153199999876445886651221442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ls~ls~lrr~~s~~~g~~~r~~k~~~~R~LhpSqWG~ICPveTPEG~~CGLVknLAl~~~v~~~~~~~~~~~~~~~~~v~ 480 (1119)
T d1smyc_ 401 LSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRRVVGGVVT 480 (1119)
T ss_dssp HHHHHHHTCEESCCSSSSCCSSCCTTTSSCCTTCSSSSCSSCSCSSSSSSSEECCBTTCEECSSSCEEBCCEECCTTBCC
T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCEEC
T ss_conf 25785335577404566554567875422366563514011047876335433654224557788755613677375870
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~d~~r~l~ 560 (1119)
T d1smyc_ 481 DEVVYMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALM 560 (1119)
T ss_dssp SCBCCBCHHHHHTSCEECSCSCBSSSBBCCSSEEEECSSCEEEECTTTCCEECCCGGGGSBTTTTTCTTGGGBCHHHHHH
T ss_pred CEEEECCCCCCCCEEEEEECEEECCCCCCEEEEEEEECCCEEEECCCCCEECCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 20698244101523577602375277310047998614844785620010010144111035665343123476530100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~li~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~a~~ipy~~~n~~~~n~~~~~~q~ 640 (1119)
T d1smyc_ 561 GSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQR 640 (1119)
T ss_dssp HHHHHHTBCCCSSCCCCSEECSCHHHHHHHTTCSBCCSSSEEECCCCSSBCCEEETTTEEECCBCCCSCCCTTSBCCCCC
T ss_pred CCCCCCCCCCEECCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 44431353001214464243351102343211357640364587640543799726686211046663443245785277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 p~~~~~~~~~~~~~l~~~~~~~~~~~p~G~NaiVAv~sytGYn~EDAiIiNkssidRG~~~s~~~k~y~~~~~~~~~~~~ 720 (1119)
T d1smyc_ 641 PRVVVGQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPE 720 (1119)
T ss_dssp BCCCSSCCBCTTCCSBCCTTBSSSSBCSSEEEEEECSCCSSTTCSSEEEEETHHHHTTCSCEEEEEEEEEEEECCTTCCC
T ss_pred CCCCCCCEEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHCCCCCEEEEEEEEEEEEECCCCCC
T ss_conf 62013635644745346733355424475313899861543112233440403434366541224577766420457873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~~~~~~~~~~~~~~~~Ld~dGi~~~G~~v~~gdili~k~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~~g~v 800 (1119)
T d1smyc_ 721 RITRDIPHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV 800 (1119)
T ss_dssp BCCSCCTTSCSTTTGGGTTTSBCCTTCBCCTTCEEECCEECSSSSSCCHHHHHHHHHHHSCSCCCEECCEECCSSCCCEE
T ss_pred EECCCCCCCCHHHHHHCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEE
T ss_conf 12035767676667526535883789886799779998346777778857754320036545516654322478989889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~~v~~~~~~~~~~~~~~~~~~~vkv~~r~~R~p~iGDKfssRHGQKGv~g~i~~~eDMPft~~Gi~PDiIiNPhg~PSRM 880 (1119)
T d1smyc_ 801 VRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRM 880 (1119)
T ss_dssp EEEEEECSSCSSCCCCTTEEEEEEEEEEEEECCCTTCEEECTTSCEEEEEEEECTTTSCBCSSSCBCSEEECSTTTTTTT
T ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHCCCCCCCEEEECHHHCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 99999840543333577864699999965630423500331036776523565544176445895025886265430116
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 TiG~liE~~~gk~~~~~g~~~d~t~F~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 960 (1119)
T d1smyc_ 881 NLGQILETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPE 960 (1119)
T ss_dssp BTHHHHHHHHHHHHHHTTCEEECCSSSSCCHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHTTTSSCTTSCHH
T ss_pred CHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 48889999887787633860630677887578999999998775314322234464521678888776415677788838
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 961 ~~~~~~~~~G~e~my~G~TG~~~~~~If~G~~yYqrL~HmV~DK~haRs~Gp~~~lTrQP~~GRsr~GGlR~GEMErd~L 1040 (1119)
T d1smyc_ 961 EQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWAL 1040 (1119)
T ss_dssp HHHHHHHHTTEECCBCTTTSCBCSSCEEEEEEEEEEBCCCGGGSCEEESSCCBCSSSCCBCCCSSSCCCEEECHHHHHHH
T ss_pred HHHHHCCCCCCEEEECCCCCCEECCEEEEEECHHHCCCHHHCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88741568999898789999983781789856110160353757665233999453089999654778862016676899
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 1041 iahGas~~L~erl~~~SD~~~~~~~~~~~~~~~~~i~~v~iPyafKlL~qEL~sm~i~~~l~~~~~~~~~~~~~~~~~~ 1119 (1119)
T d1smyc_ 1041 EAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIFEGLASKR 1119 (1119)
T ss_dssp HHTTCHHHHHHHHTTTTTCHHHHHHHHHHHHHTCCCCCCCCCHHHHHHHHHHHHSSCEEEEECSSSCCCCSSTTTSSCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHCCCCCC
T ss_conf 9998999999972545666666137877747899878789985799999999878787599836898636311367689
|
| >d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Respiratory nitrate reductase 1 alpha chain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=82073.84 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~we~~yr~~w~~Dkvvrsth~vNCtg~C~~~vyVkdG~V~~~~g~~d~P~t 80 (1074)
T d1y5ia2 1 SKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRT 80 (1074)
T ss_dssp CHHHHGGGTGGGEEEEETTTTEEEECCCCGGGHHHHHHHCCSEEEEECCCSSSSCCCCEEEEEETTEEEEEEECCCSCCC
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCCCC
T ss_conf 90665543014777664677553015888688887644688607971689997267986999989999998778999877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~g~lp~~epR~C~RG~s~~~~~YsP~RlkyPl~R~~~~~~w~~~~~~~~dp~~aw~~i~~~~~k~~~~~g~RG~G~fvrI 160 (1074)
T d1y5ia2 81 RPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRS 160 (1074)
T ss_dssp CTTSCCCTTCCCHHHHTGGGGGTSTTBCCSCEEEHHHHHHHHHHHTTCSSHHHHHHHHHTCHHHHHHHHTTTTSSCEEEC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 77666677371806344188756932226881706676544311111234023322210121111234454678827995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 SWDEAld~IAakl~~~~~kyGpd~i~~fs~~~a~s~~sy~~~~Rf~~liG~~~~s~~~~~cd~p~as~~~~G~~~~~~e~ 240 (1074)
T d1y5ia2 161 SWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPES 240 (1074)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCGGGEEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCTHHHHHHSCSCCCCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCH
T ss_conf 89999999999999999975988299981786251788999999999719980689875205899999882188888998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~D~~nA~~II~wGsN~~~t~~~~a~~i~eAr~~GaKvVvVDPr~t~ta~~AD~WLpirPGTD~ALalAM~hvIl~E~~~D 320 (1074)
T d1y5ia2 241 ADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLD 320 (1074)
T ss_dssp HHHTTCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHTSSEEECCCTTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHCCEEEEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 78971978999788967877699999999998799799989998658999754069899968999999999999853333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~dyv~~yTd~PfLV~~d~~~~~~~~G~fLrasDl~~~~~~~~~~~~k~~v~D~~~~~~~p~g~~g~rw~~~~~w 400 (1074)
T d1y5ia2 321 NPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKW 400 (1074)
T ss_dssp SCCHHHHHHHHHHBSTTBEEEEEECSSSEEEEEECBGGGBTTGGGCCSSGGGCBCEEBTTSCEECBTTSGGGTSSSCSCC
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCC
T ss_conf 44213778876003651002344455543444202100113333434554433156637787504577667655643330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 nl~~~~~~~g~~~~~~l~~~~~~d~~~~v~~p~f~~~~~~~~~~~~~~~~~~r~vp~~~v~l~dG~~~~v~TvFdll~a~ 480 (1074)
T d1y5ia2 401 NLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLAN 480 (1074)
T ss_dssp SCSSBBTTTCCBCCBCCCCTTSCSEEEEEEEECCTTCCCTTSCCCCCCSEEEEEEEEEEEEBTTSCEEEEEEHHHHHHHH
T ss_pred CHHHCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 02211344554345310003555532000345556654444454444431124555112332678731246099999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~v~r~~~~~~~~~~~d~~~~yTPewae~ITGVpae~I~~lArefA~~a~~t~grs~I~~G~G~n~~~ng~~~~RAi~~L 560 (1074)
T d1y5ia2 481 YGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINM 560 (1074)
T ss_dssp TTBCCSSCCTTSBSSTTSCCTTCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTSCEEEEECHHHHTSTTHHHHHHHHHHH
T ss_pred HCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHCHHHHHHHHHHHHHHH
T ss_conf 33343445421778776652099999998879499999999999985145668977999284012102479999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~LtGniG~~GGG~~~~~gq~~~~p~~g~~~~a~~~d~~~ppr~~~~ts~~y~~~~qwrye~~~~~~~~sp~~~~~~~~~ 640 (1074)
T d1y5ia2 561 LIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTG 640 (1074)
T ss_dssp HHHTTCTTSTTCEEEECSSCCCCSSHHHHHHHHHTTTTCSCCEEECHHHHHHHHTTGGGGCCCCSGGGSCTTSCGGGSCS
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99966788999604676676677786664544556776678666778303221021124445565333577565544445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~D~~~~a~r~gwlPs~P~~~~npl~~~~ea~~~g~~~~~~~~~~Lk~g~l~~a~e~pd~~~~~pr~~~vw~~N~l~ss 720 (1074)
T d1y5ia2 641 HLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSS 720 (1074)
T ss_dssp CHHHHHHHHHHTTSSCCSSCBSSCTTSHHHHHHHTTSCHHHHHHHHHHHTSSCBGGGCTTSSSSSCCEEEEESCCTTTTT
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCHHEEECCCHHHHC
T ss_conf 41456677775046656632356736778999872796266556766346501133245777787540202323154302
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~kg~ey~lk~llg~~~~~~~~d~~~~~~~~~~~~~w~~~~a~~KLDllV~~D~~mt~Ta~yADIVLPaATwyEk~Dl~~t 800 (1074)
T d1y5ia2 721 GKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTS 800 (1074)
T ss_dssp CSSHHHHHHHTTCSCCCCCSCCTTTTTCCCCSSSCCCSSCCCCCCSEEEEEESBCCHHHHTCSEEEEBCCTTSSCEEECC
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCEEECCCCCCCCCCCEEC
T ss_conf 35786038888437830137320000123312578989989758996999958769647648287568872425781322
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~~h~~v~~~~~AV~P~gEaksDweI~~~LAkrl~e~a~~~~~~~~d~~~~pl~~d~~~e~~~~~~~~~w~~~~~~~~pg~ 880 (1074)
T d1y5ia2 801 DMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGK 880 (1074)
T ss_dssp SSSSEEEEECCSSCCSTTCBCHHHHHHHHHHHHHHHTTTTCCEEEEEEEECCBTTSGGGCCCSSSCCCGGGTSSCCCBTT
T ss_pred CCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 78641456630459976788899999999999998631237885422116444688577458776554445764567888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 t~p~~~~v~rdy~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~il~~~~ 960 (1074)
T d1y5ia2 881 TAPHIMVVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAP 960 (1074)
T ss_dssp TBCEEEEEEEEGGGHHHHHTBCCTHHHHTCEEETTEEECCHHHHHHHHHHHCBCCSSTTTTSBBCCSHHHHHHHHHHHCT
T ss_pred CCCCCEEEECCCHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 78873568315277999976338305545777767655808999999972797766554798435779999999997197
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 961 ~tng~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~y~~~~~n~~~~~p~~tltg 1040 (1074)
T d1y5ia2 961 ETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSG 1040 (1074)
T ss_dssp TTBHHHHHHHHHHHHHHHSSCCGGGTGGGTTCBCCHHHHHHSCEECCCCTTSSSCCCSSSCCCTTHHHHHHCCCCSSTTS
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 65608799999999876286457653545566066888740872110488666789999112787240011678768677
Q ss_pred ---------------------------------C
Q ss_conf ---------------------------------9
Q 000235 1717 ---------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------~ 1717 (1815)
-
T Consensus 1041 r~~~y~dh~~~~~~ge~l~~~~p~~~~~~~~~~~ 1074 (1074)
T d1y5ia2 1041 RQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVI 1074 (1074)
T ss_dssp SBCCCCCSHHHHHTTCSSCCCCCCCCCCCSTTTT
T ss_pred CEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 7422426499998476665458998865544349
|
| >d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Reovirus inner layer core protein p3 superfamily: Reovirus inner layer core protein p3 family: Phytoreovirus core domain: RDV p3 species: Rice dwarf virus [TaxId: 10991]
Probab=100.00 E-value=0 Score=73860.81 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~SvVSRvplPvSf~~~~dv~klFdIipi~~GSt~~Ivd~Pqv~F~i~y~~~iyddfmci~h~~AfEPsltmHRv~~ifS~ 80 (967)
T d1uf2a_ 1 QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYEPSLTMHRVRVIYSM 80 (967)
T ss_dssp CCCCCSCSSCCEEEEGGGSCCCEEEEEEEECCSSSCCSSCEEEEEEEECSCTTHHHHCTTSCTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHEEEEEECCCCCEEECCCCEEEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 97432341441236588888764002352166324533784589876131233345544254335705889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 l~kYc~smiseVPt~s~~v~~~pVk~vtmskfgDRnMd~lAe~L~~e~ev~~Aq~~nr~~YvR~sa~~vP~~FgDDL~~a 160 (967)
T d1uf2a_ 81 LNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDALAEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPA 160 (967)
T ss_dssp HHHTTTEEEEECCEEEEEETTEEEEEECGGGSGGGCHHHHHTTSSSHHHHHHHHHHHHHHSEEEECSSCSSCCCCCCCTT
T ss_pred HHHHHHHHHCCCCCHHHEECCCCEEEEEHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 99999998636883130213563379866750676689998753405788877888888986603777871446779735
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 vrER~nlYhrY~VPfh~iELaLy~lA~~lL~~QYCHPtvvy~yl~~RAPpFL~v~Dqv~l~m~sAG~G~LmPRPVmelLD 240 (967)
T d1uf2a_ 161 VRERANLYHRYSVPYHQIELALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQLLD 240 (967)
T ss_dssp TSCCGGGEEEEEESSCHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTCCTTEEECHHHHHHHHSCCTTEEEECCCCCCCC
T ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 43132432133136628999999999988764114669999999852998288630888988745786425710787710
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Y~LVY~SPLALnnLasrL~skIs~~l~mrmvteVq~~lse~~~vSS~vsn~ass~i~~mNv~GVetla~fiarS~LNPNi 320 (967)
T d1uf2a_ 241 YDLVYMSPLALNNLASRLLRKISLHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFIAQSMLNPNI 320 (967)
T ss_dssp GGGGGGCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHTCCTTCCCHHHHHTTSCCHHHHHHHHHHHHHTTTCTTT
T ss_pred HHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 22202486777679999997643510134599999779988543345678057788761033278999999998518851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 sYa~Is~LtldaF~dFiYG~CLlL~QA~~PPSAi~A~~Ri~InNrlAYFLiryia~qaty~RL~aN~vip~~~n~d~Wqs 400 (967)
T d1uf2a_ 321 SYGMISGLTLDCFSNFIYGACLMLFQALIPPSALTARQRLDINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQS 400 (967)
T ss_dssp EEEEESCCCTTGGGSHHHHHHHHHHTTTSCGGGBCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTTSSCCTTCTTTSSC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHEE
T ss_conf 35775133077777678889999998527868765676763655889999998558524878864376467334223110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~rD~LvAIY~NLl~ge~rl~nli~~YfRg~~p~~v~~i~iPA~qTsYginEtr~iSaPYLFGapIn~maPD~RL~~yK~ 480 (967)
T d1uf2a_ 401 NGRDVLVAIYNNLLPGELVLTNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAPYLFGAPINMLAPDARLSTYKR 480 (967)
T ss_dssp CSCCHHHHHHHTCCTTCHHHHHHHHHHTTTCCHHHHTCEEECGGGSTTCCCEEGGGTTTSTTCCCGGGCCBCGGGHHHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCCHHCCCHHHHCCCCHHHHHHHH
T ss_conf 56202388875025333489999999973698777765126503212565533334651321662553197204777752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~LnLPpRSPILitn~eg~Nvisl~Nl~~K~d~I~a~YlngFv~~pp~WiRNa~sNtAlL~kf~d~vsNl~gIyEavLaNt 560 (967)
T d1uf2a_ 481 DLALPDRSPILITTVEGQNSISIENLRHKTGLIRAMYLNGFVTQPPAWIRNANSNTALLSRFLDATPNLLGIYEAILANT 560 (967)
T ss_dssp HHTCCSCCCBCCSCEETTTEECCHHHHHHHHHHHHTTSSCCSSCCTHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHTTH
T ss_pred CCCCCCCCCCEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 36899989700046555762018776778889999997265679879986155238999998850302789999999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 YaNAvNvYCDsvYra~iPlnWk~~~~i~PkD~lF~vFGi~P~Yql~~eavPDFFAGsEDILILQLirAvy~~lsn~lG~~ 640 (967)
T d1uf2a_ 561 YANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGRN 640 (967)
T ss_dssp HHHHSBSSCCCCCCTTSCGGGSEEEEECGGGHHHHHHHBCCCSSCCCCCCCCBTTTTHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCCCCCCCCCCCCEEEEEEECCHHEEEEEEECCHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 66554321143205899633154244071243676640240311135546311158640359999999999987562698
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 Pt~~FhlEeV~k~iseiVSil~~~kiDV~~YFTdsmrS~tFsKp~WdrFirR~v~~~LPpLY~~I~~Q~~~vynym~qm~ 720 (967)
T d1uf2a_ 641 PADIFHLEEVFKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRLPNLYSVIMTQADHVYNYMTQLT 720 (967)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHTSCCCHHHHTBSSSSCCCBCHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 46640299999999999999863200158862367654655717799998777765478499999999999999999666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~i~PI~D~FYivrNsG~vaRGS~~piiAatsiy~Nq~~v~~~I~df~~a~~Lrl~~rRVDNtS~t~~l~dmFy~LssIsS 800 (967)
T d1uf2a_ 721 HIIPITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVDNTSYTDSLSDMFNGLRSISS 800 (967)
T ss_dssp GGSSEESCEEEESCCCEECTTCCSSEEEESSCCGGGEEEEEEECSHHHHHHHHTCEEECSSSCEEEHHHHHHHTSCCCCH
T ss_pred HHCCCCCEEEEEECCCEEECCCCCCEEEEEHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 56020225999713654622787764552012111020133224279888778878750564310148998622333137
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~EFVRS~rGrs~~~~~~v~aIkVNMrAry~L~i~tE~G~~skpp~ikK~M~sDf~sfl~sh~~~p~pPi~tiPItIgLnn 880 (967)
T d1uf2a_ 801 SEFVRSVNGRSVFTEGRIDAIKVNMRAKFDLQFITEEGGYSKPPNVKKLMFSDFLSFLDSHKSDYRPPLLTVPITIGLNN 880 (967)
T ss_dssp HHHHCEETTEECCCSCCEEEEEECCCEEEEEEEEEECSCCSSCCCCCCCCHHHHHHHHHHSTTCSSCCCEEEEEEEEEEC
T ss_pred HHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCC
T ss_conf 77776305864530124434886404668899995268757880277888999999998536888997289756761364
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 881 lGettSt~~RmrS~~vDEYFk~y~GAQviiP~d~v~~e~~gsf~eLrn~f~g~Vv~Rdkpw~iw~~v~a~YvpiGnH~V~ 960 (967)
T d1uf2a_ 881 LGETNSNTLRMRSEAIDEYFSSYVGAQILVPINVVDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIPIGVHGVR 960 (967)
T ss_dssp TTSCCCCCCCSCHHHHHHHHGGGCCCSEECCGGGCCCEEESSHHHHHHHSCEEEEEESSCCEECCCCCBCEEECSSCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCHHHHHHHHCCCEEEECCCEEEECCCCEEEEEECCCCEE
T ss_conf 23334321021057788999874275499860155533203399999872685588327524304653357861676335
Q ss_pred ------C
Q ss_conf ------9
Q 000235 1717 ------A 1717 (1815)
Q Consensus 1717 ------~ 1717 (1815)
+
T Consensus 961 lDP~g~~ 967 (967)
T d1uf2a_ 961 LDPNGDQ 967 (967)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
T ss_conf 0898999
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=73210.86 Aligned_cols=1 Identities=0% Similarity=-0.627 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~d~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~ 80 (959)
T d1wa5c_ 1 MSDLETVAKFLAESVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 (959)
T ss_dssp CCHHHHHHHHHHHTTSGGGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 97199999999878996899999999999770998999999998358999999999999999999985564344579999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~ 160 (959)
T d1wa5c_ 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRS 160 (959)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998379699999999999999987684025799999999857999999999999999999998765132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (959)
T d1wa5c_ 161 DELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYL 240 (959)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 54776799999999999999999999997635241999999999999999999997752046999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~ 320 (959)
T d1wa5c_ 241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (959)
T ss_dssp SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 00553135801455502899999999999999999858989999999999999999988335552899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~ 400 (959)
T d1wa5c_ 321 RIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIF 400 (959)
T ss_dssp TSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 51789988720467888999999988567877898775063877787740000021778999999999975341126889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~ 480 (959)
T d1wa5c_ 401 LAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK 480 (959)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999751468762167788999999999863126666552123043499999999999973688750999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~ 560 (959)
T d1wa5c_ 481 YIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560 (959)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99877741267889999999998727996158999999999999866003320010328877756999999999999861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~ 640 (959)
T d1wa5c_ 561 GSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD 640 (959)
T ss_dssp CCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 22025678899999999999998798888899999999999999985684236789999999999998428135999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 720 (959)
T d1wa5c_ 641 SMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLV 720 (959)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHH
T ss_conf 99999999984331647899999999998747786688999999986378887761189999999999972878644628
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~~l~~~~~~l~~~~~~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (959)
T d1wa5c_ 721 PVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIH 800 (959)
T ss_dssp HHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 79999999877983068999999999997851446768999999999998704608999999999999998719999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 880 (959)
T d1wa5c_ 801 FIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYV 880 (959)
T ss_dssp HHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCSTTCSCCSCC
T ss_pred HHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 99984321589999999973141039999999999999998658861425799999999999998762654332013201
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~l~~ 959 (959)
T d1wa5c_ 881 DLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQLTQENQVKLNQLLVG 959 (959)
T ss_dssp -----CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHHHHHGGGSCHHHHHHHHHHHC-
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf 1144564223120256799866343697445776522999999999999875977899999973999999999998569
|
| >d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate carboxylase domain: Phosphoenolpyruvate carboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=71448.95 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~D~~llg~ll~vi~e~~G~~~~~~vE~iR~ls~~~r~~~~~~~~~~L~~~l~~L~~~~~~~v~RAFs~~f~L~NiAE~ 80 (936)
T d1jqoa_ 1 IEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEE 80 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 92488889889999998507899999999999999987248878899999999779989999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~rr~R~~~~~~~~~~~~g~~~~~~sl~~al~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrTvL~~~r~I~ 160 (936)
T d1jqoa_ 81 VQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKNARIR 160 (936)
T ss_dssp HHHHHHHHCC-----------------CHHHHHHHHHTTSCCCHHHHHHHHHTCEEEEEEECCTTCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 89999999987521455555666765649999999998659899999999835956677556998872688999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~lL~~ld~~~lt~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~~l~y~~~sl~~avP~l~~~l~~al~~~~~~~ 240 (936)
T d1jqoa_ 161 NCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINE 240 (936)
T ss_dssp HHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99998653669858899999999999999857531024799869999999999885058778999999999998647774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~irfGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~~~~~~~~l~~~~~~~~ 320 (936)
T d1jqoa_ 241 RLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKV 320 (936)
T ss_dssp CCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 56667772035313444798998879899999999999999999999999999970852020133157899998656566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~EPyR~~L~~i~~RL~~t~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~la~~ 400 (936)
T d1jqoa_ 321 TKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADG 400 (936)
T ss_dssp CTTCSSSCSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCSTTSCCSHHHHHHHHHHHHHHHHHTSCCTTTTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 77767898751763288999999999999999999987514667777323457779999999999999987386333453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~L~~Lir~V~~FGfhLa~LDIRQ~S~~H~~ai~el~~~~g~~~y~~~~e~~r~~~L~~eL~~~rpl~~~~~~~~~e~~~~ 480 (936)
T d1jqoa_ 401 SLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADV 480 (936)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEECCHHHHHHHHHHHHHHHTSCCSTTSCHHHHHHHHHHHHHCCSCCCCTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 46899999997164211356642148999999999986578773337868889999998557888888641003469999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 l~~~~~i~~~g~~aig~YIISmt~s~sDvL~V~lLak~~g~~~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l~~~ 560 (936)
T d1jqoa_ 481 IGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGK 560 (936)
T ss_dssp HHHHHHHHHSCSTTEEEEEETTCCSTHHHHHHHHHHHHTCCSSCCCEEEEECSHHHHHTHHHHHHHHHTCHHHHHHHTSE
T ss_pred HHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCC
T ss_conf 99999998517000132031157867889999999997199888773630334999984299999998382888743104
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 QeVMlGYSDS~KDgG~laa~W~ly~Aq~~L~~v~~~~gv~l~~FHGRGGsvgRGGGPt~~ai~sqP~gs~~g~ir~TeQG 640 (936)
T d1jqoa_ 561 QQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQG 640 (936)
T ss_dssp EEEEEESTTHHHHSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGGGTCCCHHHHHHTSCTTSCTTEEEEEEEH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 27775355554225788888899999999999999839638997067886556789768899858898857745887521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 EvIs~ky~~~~~a~~~Le~~~aa~l~~~~~~~~~~~~~~~~~~~~ls~~s~~~Yr~lv~~~p~F~~yf~~aTPi~ei~~l 720 (936)
T d1jqoa_ 641 EVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRM 720 (936)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSCCGGGGGG
T ss_pred EEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 01465216888999999999999996035887789723789999999999999987562797389999987157777545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 nIGSRPa~R~~~~~l~dLRAIPWVfsWtQ~R~~lPgWyG~GsAl~~~~~~~~~~~~~l~~my~~wpfF~~~l~n~~m~la 800 (936)
T d1jqoa_ 721 NIGSRPAKRRPGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFA 800 (936)
T ss_dssp CCSCCC--------CTTCCSHHHHHHHHHTTCCHHHHTTHHHHHHHHHHHCTTHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 68899754778999655676723778988653226875157999999861745599999999709399999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 K~d~~ia~~Y~~l~~d~~~~~~~~~i~~E~~~t~~~~l~it~~~~Ll~~~p~l~~si~~R~py~~pL~~~Qv~lL~r~R~ 880 (936)
T d1jqoa_ 801 KGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRIRD 880 (936)
T ss_dssp TCCHHHHHHHHHHTSCSTTHHHHHHHHHHHHHHHHHHHHHHTCSSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31899999999857887799999999999999999999981984142169689999998837888999999999999872
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
.
T Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~tingIAaGlrnTG 936 (936)
T d1jqoa_ 881 PNFKVTPQPPLSKEFADENKPAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG 936 (936)
T ss_dssp TTCCCCCCCCCSCC-------CTTTTTSSSCSSCTTHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 33344443200000000000123430365321135679999999999999815388
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=67737.44 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~p~~~~l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~ 80 (888)
T d1qbkb_ 1 YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 80 (888)
T ss_dssp CCSHHHHTTHHHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999869999999999976397999999999999997739989999999997457999899999999999999870023
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~ 160 (888)
T d1qbkb_ 81 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 160 (888)
T ss_dssp STTTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998299889999999999999987182112999999999867999899999999999999986887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l 240 (888)
T d1qbkb_ 161 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVML 240 (888)
T ss_dssp HHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 60778887999999999998638888999999998777887403889999999999888760793067799999999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 320 (888)
T d1qbkb_ 241 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 320 (888)
T ss_dssp SCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 98767888998887899999862898689999889999999971645899999999999999987421268899885546
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l 400 (888)
T d1qbkb_ 321 EEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLL 400 (888)
T ss_dssp SCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65442142577778899999999987401112102310344544300113369999999876676512999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 480 (888)
T d1qbkb_ 401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 480 (888)
T ss_dssp HHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87512205689999999864355557877421203556799984269989999999999999999866541565545558
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~ 560 (888)
T d1qbkb_ 481 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 560 (888)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99998842898789998999999999875531135799999999999860037799999999999998623101336799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 640 (888)
T d1qbkb_ 561 QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMI 640 (888)
T ss_dssp HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999999999751210688999999999999986787765699999999988998999999874162011000688999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~ 720 (888)
T d1qbkb_ 641 VALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFI 720 (888)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999888998730566666658569999999967997689999999988778751687787799999999987386778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~ 800 (888)
T d1qbkb_ 721 SVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR 800 (888)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999987798650599999999998769986378999999999999987979888649999999999726
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~ 880 (888)
T d1qbkb_ 801 NIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKE 880 (888)
T ss_dssp TSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH
T ss_conf 37981899999999999999784988877999999997037997899999999999999876927599999759999999
Q ss_pred -------C
Q ss_conf -------9
Q 000235 1717 -------A 1717 (1815)
Q Consensus 1717 -------~ 1717 (1815)
-
T Consensus 881 ~l~~~y~~ 888 (888)
T d1qbkb_ 881 RLAAFYGV 888 (888)
T ss_dssp HHHHHCC-
T ss_pred HHHHHHCC
T ss_conf 99986292
|
| >d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: T7 RNA polymerase domain: T7 RNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Probab=100.00 E-value=0 Score=67278.98 Aligned_cols=1 Identities=100% Similarity=0.503 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rQ~~LE~ea~~~g~~R~r~~~e~~~~rg~~s~~~~g~~li~~~l~~l 80 (882)
T d1mswd_ 1 NTINIAKNDFSDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKM 80 (882)
T ss_dssp CCCCCCCCCCGGGSCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96641324014677741780456665448999999999999999999999999999996377667789999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~I~~~~~~~~~~~G~~~~~~~yL~~l~pe~lA~Itik~~ld~l~~~~~~~~t~va~~IG~AVE~E~r~~~~~~~~~~~ 160 (882)
T d1mswd_ 81 IARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDEARFGRIRDLEAKH 160 (882)
T ss_dssp HHHHHHHHHHHHHSCSCCCTTTTTTTSSCHHHHHHHHHHHHHHHHHHCSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 99999999998722487516789885599789999999999998647998749999999999999999999999867687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~k~~~~~~~k~~~~~~kk~~~~~~~~~~~~~~~~~~~~w~~W~~~~r~kVG~~Lle~l~e~tg~~~~~~~~~~~~~k~~ 240 (882)
T d1mswd_ 161 FKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDS 240 (882)
T ss_dssp HHHHTSHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC--------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
T ss_conf 87751899998751799999999998988875212565667668777998999999999987488434113566446767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~v~~t~~~~~~l~~~~~~~~~~~P~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~aLN 320 (882)
T d1mswd_ 241 ETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPEVYKAIN 320 (882)
T ss_dssp CEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSSTTHHHHTTTCCCHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCHHHHHHCCCCCHHHHHHHHH
T ss_conf 61346699999999667688752721254457995287788598430577751010243076664044433378999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~LQst~wrIN~~vLdv~~~~~~~~~~~~~~iP~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~r~~~~~~ 400 (882)
T d1mswd_ 321 IAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 400 (882)
T ss_dssp HHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98158837579999999999852798634567665454687655443688999999998899999999987688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 l~~A~~~~~~~~fy~P~~~DfRGR~Y~~~~ln~qg~D~~rsLl~Fa~~~~l~~~g~~wL~i~~An~~g~dK~s~~~r~~w 480 (882)
T d1mswd_ 401 LEQANKFANHKAIWFPYNMDWRGRVYAVSMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPERIKF 480 (882)
T ss_dssp HTTTSSSSSCSCBBCCEEEETTSCEEESSSSCTTSCHHHHHHEEESSCEECHHHHHHHHHHHHHHHTTCCSSCHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999837998366421110466556688788776625432442067872561158899998872267302318889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~i~~~~~dp~~~~~w~~a~~p~qfla~c~e~~~~~~~~~~~~s~lpv~~D~scnG~Qh~aal~~d~~~a~~vNL 560 (882)
T d1mswd_ 481 IEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYAGVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNL 560 (882)
T ss_dssp HHHTHHHHHHHHHCHHHHCGGGGSSSHHHHHHHHHHHHHHHHHCTTCEECCCEEEECSCHHHHHHHHHHTCTTHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHHCCC
T ss_conf 99768999865308400035661754479999999999987547854224501112674288899998508888986189
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~p~~~p~DvY~~va~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~Rk~vK~~vMT~~YG~ 640 (882)
T d1mswd_ 561 LPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAYGS 640 (882)
T ss_dssp SCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHHHHHHHHHTTCCCHHHHHHHHHGGGGTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHCCCEEEEECCC
T ss_conf 98998765899999999999987653266311111111111000110011217789998612331333203505653264
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 t~~g~~~qi~~~l~~~~~~~~~~~~~~~~~~~~~yla~~i~~~i~~~~~~a~~~m~wl~~~a~~i~~~~~~~~~~~~~~~ 720 (882)
T d1mswd_ 641 KEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRK 720 (882)
T ss_dssp CHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCEECTTTCCEEEC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 20018999999876530023545442214689999999999998885220899999999999999975224445677437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~~pv~W~TP~G~pV~Q~Y~k~~~~~v~t~l~~~~~~~~~~~~~~~~~~d~~Kq~~a~~PNfIHSlDAshm~~t~~~~~~~ 800 (882)
T d1mswd_ 721 RCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEK 800 (882)
T ss_dssp CCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98179899999989888627870899998626157886630588888795675135694888889999999999999985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 801 ~g~~~fa~VHDsf~tha~dv~~m~~~lRe~Fv~ly~~~~~l~~~~~~~~~~~~~~~~~~~p~~P~~G~lDl~~V~~S~Yf 880 (882)
T d1mswd_ 801 YGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDILESDFA 880 (882)
T ss_dssp TCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTTCTTCCCCCCCCCCCSCCGGGGGTCSSC
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 79997888721778772059999999999999998478599999999998704120024899999998388886479677
Q ss_pred -C
Q ss_conf -9
Q 000235 1717 -A 1717 (1815)
Q Consensus 1717 -~ 1717 (1815)
.
T Consensus 881 Fs 882 (882)
T d1mswd_ 881 FA 882 (882)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate carboxylase domain: Phosphoenolpyruvate carboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=67135.54 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~Lr~dvr~Lg~lLg~vi~~~~G~~~~~~vE~iR~~s~~~r~~~~~~~~~l~~~l~~L~~~~~~~v~RaFs~~f~L~N 80 (880)
T d1jqna_ 1 QYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLAN 80 (880)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 95478899999999999999986589999999999999998653784419999999977998999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 iAE~~~~~r~~~~~~~~~~s~~~~~~~l~~~~~i~~~~i~~~L~~~~i~pVlTAHPTEa~RrsvL~~~~~I~~lL~~~d~ 160 (880)
T d1jqna_ 81 TAEQYHSISPKGEAASNPEVIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQLDN 160 (880)
T ss_dssp HHHHHHHHCTTTTCTTCTHHHHHHHHHHHTCTTCCHHHHHHHHHTCCEEEEECCCTTCCBSSCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999874103468626999999998735989999999996097857556798877068999999999999998665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~e~~~~~~~l~~~i~~LW~T~e~R~~KPtv~DE~~n~l~y~~~sl~~avP~l~~~l~~al~~~~~~~~~~~~~~i 240 (880)
T d1jqna_ 161 KDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVPNYLRELNEQLEENLGYKLPVEFVPV 240 (880)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHCCCBCSSCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCCTTCCCE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 67885879999999999999986677645589999999999998778899998878999999999873687676655533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~fGSWIGGDRDGNP~VTaevT~~al~~~r~~~l~~Y~~~l~~L~~~LS~s~~~~~l~~~~~~~~~~EpyR~~l~~i~~rL 320 (880)
T d1jqna_ 241 RFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELLALVGEEGAAEPYRYLMKNLRSRL 320 (880)
T ss_dssp EEEECTTTBCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCTTSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 14578777778988778999999999999999999999999999998652412889998755222608999987798999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~t~~~~~~~l~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~g~~~ia~~~L~~Lir~V~~FGfhLa~LDIRQ~S~vH~ 400 (880)
T d1jqna_ 321 MATQAWLEARLKGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHT 400 (880)
T ss_dssp HHHHHHHHHHHTTCCCCCCSSCCCCHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHTTTTSSEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 98899998663144568824211687989888999999999748515555578999999997273200302431069999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~al~ei~~~~g~~dY~~l~e~~r~~~L~~el~~~rpl~~~~~~~s~~~~~~l~~~~~i~~~g~~~i~~yIISmt~s~sDv 480 (880)
T d1jqna_ 401 EALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDV 480 (880)
T ss_dssp HHHHHHHHHHTSCCGGGSCHHHHHHHHHHHHHCSSCCSCSSCCCCHHHHHHHHHHHHHHHSCTTSEEEEEEETCCSHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCHHH
T ss_conf 99999998503467000385678999987324677787754454578999999999999818553012000045770049
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 L~V~~Lak~~G~~~~l~IvPLFETi~DL~~a~~il~~ll~~p~yr~~l~~~qeVMlGYSDS~KDgG~laa~w~ly~aq~~ 560 (880)
T d1jqna_ 481 LAVHLLLKEAGIGFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDA 560 (880)
T ss_dssp HHHHHHHHTTTCCSCCCEEEEECSHHHHHHHHHHHHHHHHSHHHHHHTTTEEEEEECHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999829986544151440098898439999999648899998622153331335444315688877999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 L~~~~~~~gv~l~~FhGRGGsvgRGGGp~~~ai~aqp~g~~~g~ir~TeQGE~is~ky~~~~~A~~~Le~~~~a~l~~~~ 640 (880)
T d1jqna_ 561 LIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANL 640 (880)
T ss_dssp HHHHHHHHTCEEEEEECSSTGGGSCHHHHHHHHHTSCTTTTTTCEEEEECGGGHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999974983798606787656678967789985678773676333202799998169989999999999999998734
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~~~~~~~~~~~~~ls~~s~~~yr~l~~~~~~f~~yf~~~tPi~~~~~l~iGSRP~~R~~~~~~~~LRAIPwvf~W~Q 720 (880)
T d1jqna_ 641 LPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQ 720 (880)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSCHHHHHHSSCSSCC------CCGGGSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHH
T ss_conf 89877621489999999998899999865159405668998515742032566752034789999555357873021342
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~r~~lp~w~G~GsAl~~~~~~~~~~~l~~my~~wpfF~~~l~n~~m~lak~d~~ia~~Y~~l~~d~~~~~~~~~i~~e~~ 800 (880)
T d1jqna_ 721 NRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQE 800 (880)
T ss_dssp TTCCGGGTTTHHHHHHHHHTTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 44625799857999999986470899999998095899999999999980289999999873588879999999999999
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 801 ~t~~~~l~i~~~~~ll~~~p~l~~si~~R~p~~~pL~~~Qv~lL~r~R~~~~~~~~~~~~l~~~l~~tingIaaglrnTG 880 (880)
T d1jqna_ 801 EDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKEGQEPDPRVEQALMVTIAGIAAGMRNTG 880 (880)
T ss_dssp HHHHHHHHHTTCSSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998729840521597999999988788889999999999998715566754346789999999999999701388
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=66815.65 Aligned_cols=1 Identities=100% Similarity=0.004 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~ 80 (876)
T d1qgra_ 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
T ss_conf 97899999885929899999999999998607157999999998448999999999999999875305620015553033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~i~~~~k~~ik~~ll~~l~~~~~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~ 160 (876)
T d1qgra_ 81 LAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 35999999999999999866970889999999999999877734638999999998659999689999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~ 240 (876)
T d1qgra_ 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240 (876)
T ss_dssp SCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 77887788899999999998717574579999999999878887310125778999999999998259988999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (876)
T d1qgra_ 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (876)
T ss_dssp HHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999996999888788799999998734533899999999999988889999987337887531699999999998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~ 400 (876)
T d1qgra_ 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88776578887430023543313999999999999987366653556789998602513788899999887666432298
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~ 480 (876)
T d1qgra_ 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 89899999999999861578608999999889999998131110177766679999988269879999999878899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 560 (876)
T d1qgra_ 481 AYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQ 560 (876)
T ss_dssp HHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88877777888766688888879999999999987532322767799999998754203667788899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~ 640 (876)
T d1qgra_ 561 VLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp HHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 98776640134316889999999999999999970602356657999999999986378886358999999999998722
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i 720 (876)
T d1qgra_ 641 GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDI 720 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 10677799899999999818885899999999999999872776542699999999998187668899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 800 (876)
T d1qgra_ 721 ALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSF 800 (876)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99970865878999999999998624676515689999999999999999999984223211124499999999899999
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 801 i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~~~~~ 876 (876)
T d1qgra_ 801 IDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQA 876 (876)
T ss_dssp HHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998648877899999999999999999777899988468089999999871998789999999999999744689
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=65658.47 Aligned_cols=1 Identities=0% Similarity=-1.192 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 M~~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~ 80 (861)
T d2bpta1 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 98899999999985598999999999999998744716899999999976999989999999999998511450223567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~ 160 (861)
T d2bpta1 81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG 160 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 76667329999999999999998839988999999999999999767767638899999998569995899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (861)
T d2bpta1 161 YMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240 (861)
T ss_dssp HHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99988347788889889999999999873334789999999999999999876767766654477776798856998999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (861)
T d2bpta1 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999887789999999989999999873275499999999999999999988999998620367899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~ 400 (861)
T d2bpta1 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP 400 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999988730244401477888899998887760331466541111354200177788888998999988410
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l 480 (861)
T d2bpta1 401 DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINL 480 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 26668887899999998873376205666898899999998130100477620456899860246708999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 560 (861)
T d2bpta1 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560 (861)
T ss_dssp HHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98752302211468875478899998742123489999999989999998688889999999999999999999888654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i 640 (861)
T d2bpta1 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETF 640 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11667767999999999999999861536579999999999751001588365887899999888877457899999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~ 720 (861)
T d2bpta1 641 SPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY 720 (861)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 05999873799889999999999999997578727119999999999857888889999999999999999987988999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~ 800 (861)
T d2bpta1 721 LNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR 800 (861)
T ss_dssp HHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999999998576777541899999999999999999999998457777899889999999999970776587799999
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------~ 1717 (1815)
-
T Consensus 801 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (861)
T d2bpta1 801 AAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLSL 861 (861)
T ss_dssp HHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999877435578888419999999999828322499999999999999777278
|
| >d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId: 40051]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Reovirus inner layer core protein p3 superfamily: Reovirus inner layer core protein p3 family: Orbivirus core domain: BTV vp3 species: Bluetongue virus, strain 1 [TaxId: 40051]
Probab=100.00 E-value=0 Score=64454.85 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 vd~~~pDi~~I~~~ik~L~~er~yrI~~~Pp~syR~i~~QS~~r~~rVd~~~EriS~vG~~~~~~~p~~~~~~vl~rV~~ 80 (845)
T d2btva_ 1 VDFTVPDVQQILDDIKALAAEQVYKIVKVPSTSFRHIVTQSRDRVLRVDTYYEEMSQVGDVITEDEPEKFYSTIIKKVRF 80 (845)
T ss_dssp CCCCCCSSSHHHHHHHGGGGCCCCEEESSCCCCCEEECCSCSSCEEEECSHHHHHHSSSCCCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCEEEEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99774239999998998764457456416874023576025435898317999987405666657889999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ird~GsFIL~d~pT~~~~G~EV~~~daLGvd~~~~l~~L~a~~r~~vq~~l~~~iI~N~~~~~~~vD~~~~Am~D~vYrV 160 (845)
T d2btva_ 81 IRGKGSFILHDIPARDHRGMEVAEPEVLGVEFKNVLPVLTAEHRAMIQNALDGSIIENGNVATRDVDVFIGACSEPIYRI 160 (845)
T ss_dssp HHHHHCEEEESCCEEEETTEEEECGGGSSCCCTTSTTTSCHHHHHHHHHHHTTCBCBCCCSSSSCEEEEECCCCHHHHHH
T ss_pred HHHCCCEEEECCCCCCCCCCEEECCHHCCEECHHCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCHHHHHH
T ss_conf 97378668716985442774641520041221111355882557899998765477156445662023212477079999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 H~~L~~yIe~~Q~~~~R~s~~WL~~lg~~Kri~~~~~~LTD~~~~dtiyils~~LP~np~vIW~VPRc~i~NL~mn~Al~ 240 (845)
T d2btva_ 161 YNRLQGYIEAVQLQELRNSIGWLERLGQRKRITYSQEVLTDFRRQDMIWVLALQLPVNPQVVWDVPRSSIANLIMNIATC 240 (845)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEECCGGGCCSGGGGEEECCCSCSSCCHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf 99999889751389999999999997652275447777531367865899972379998627756655516788888762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~P~g~yi~pn~ri~siTit~rIt~~~pFs~l~~~tpT~~qm~DVrkIylaLmfPnQiilDik~~pgh~vDp~~r~vaGv~ 320 (845)
T d2btva_ 241 LPTGEYIAPNPRISSITLTQRITTTGPFAILTGSTPTAQQLNDVRKIYLALMFPGQIILDLKIDPGERMDPAVRMVAGVV 320 (845)
T ss_dssp CCEEEEECCCHHHHHHHTSCSSSCCCGGGGGGCCCCHHHHHHHHHHHHHHHTSCSSEEBCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCEEEEEEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 88414735888325899875452368589863899716778899999998837875899568998754478999999887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 G~lmFtyGPr~fNIT~~~A~~lD~al~d~l~~my~~r~~i~~g~sg~PLDF~iG~~~yDcn~lr~dp~TG~GynGw~~~d 400 (845)
T d2btva_ 321 GHLLFTAGGRFTNLTQNMARQLDIALNDYLLYMYNTRVQVNYGPTGEPLDFQIGRNQYDCNVFRADFATGTGYNGWATID 400 (845)
T ss_dssp HHHHSCCCSSCCCBCHHHHHHHHHHHHHHHTTCCSSCCCEECCSSCSTTCCEETTTTEEGGGGSCCTTTCCSSSSSSSCC
T ss_pred HHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCE
T ss_conf 62011017752335666789999999999998743761430588999803885375456777536965477745644320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 v~~r~ptPY~HV~R~i~Y~g~ds~eiidp~~~g~~~~y~~~~em~~~L~aaG~~qe~~Yl~~m~p~h~vRFA~inqiINr 480 (845)
T d2btva_ 401 VEYRDPAPYVHAQRYIRYCGIDSRELINPTTYGIGMTYHCYNEMLRMLVAAGKDSEAAYFRSMLPFHMVRFARINQIINE 480 (845)
T ss_dssp EECCSCCSSCSCCCEECGGGCCCCSCCCSTTTSSSCCCSHHHHHHHHHHHHSCHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCCCHHEEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01158999710346888448880763486455998653899999999998361889999998516889999998888737
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 dllSaFSlPD~~F~~l~~~~~~~~~~~~~PvvLdvS~~SIw~aF~~rf~pt~rs~~l~~aPliESvyas~LS~mkl~~~~ 560 (845)
T d2btva_ 481 DLHSVFSLPDDMFNALLPDLIAGAHQNADPVVLDVSWISLWFAFNRSFEPTHRNEMLEIAPLIESVYASELSVMKVDMRH 560 (845)
T ss_dssp TSCSTTSCCHHHHHHHHHHHHHCCCCSCCCEECCCCTTHHHHHHTCEEEEEECCTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77753689478999987663111147899869984499999998750787678556664068899998788999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 l~~f~~~~p~~~~~~~~~~~Wkavl~~~Pe~ik~i~dL~~~~~Fi~~~Di~~Wi~~~~~q~Sl~~~l~~~AW~~a~d~~~ 640 (845)
T d2btva_ 561 LSLMQRRFPDVLIQARPSHFWKAVLNDSPEAVKAVMNLSHSHNFINIRDMMRWVLLPSLQPSLKLVLEEEAWAAANDFED 640 (845)
T ss_dssp HHHHHHHSTTTCSSCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHTTSSTT
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99998758430024888999999971385889999976545032049999988618044468999999999987389878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 iMlt~~VYihr~~iPeP~iDDi~~Frre~~y~TNm~~~~Pp~~~~v~~s~~~a~l~A~~G~fk~aiR~iLD~g~~Ir~G~ 720 (845)
T d2btva_ 641 LMLTDQVYMHRDMLPEPRLDDIERFRQEGFYYTNMLEAPPEIDRVVQYTYEIARLQANMGQFRAALRRIMDDDDWVRFGG 720 (845)
T ss_dssp TTBCSCEEEEEEECCCCCCSSGGGGGSCTTCCBSCBSSCCCGGGEEEECHHHHHHHHHTTCHHHHHHHHHHTCCEEEECC
T ss_pred HCEEEEEEEECCCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 01542589970579999832699998645021013568997674110489999977046558999999854798699642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~LR~v~~~~fes~Pp~eil~~LPf~Y~~~e~~Gl~~~tv~~~~~~t~y~liYnv~~~~~PD~~v~~nP~~~mt~i~i~~~ 800 (845)
T d2btva_ 721 VLRTVRVKFFDARPPDDILQGLPFSYDTNEKGGLSYATIKYATETTIFYLIYNVEFSNTPDSLVLINPTYTMTKVFINKR 800 (845)
T ss_dssp CCCEEEEEEESSCCCHHHHSCCSEEEEEECCTTTCEEEEEECCEEEEEEECCCCCTTCCTGGGCCSSCCEEEEEEBCSSC
T ss_pred EEEEEEEEECCCCCCHHHHHHCCCEECCCCCCCCCEEEEEECCCEEEEEEEEECCCCCCCHHHHHCCCCCEEEEEECCCC
T ss_conf 53106898136799687896389320552237853289996042389999995477889516662377632579970677
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000235 1717 --------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------~ 1717 (1815)
-
T Consensus 801 ~v~rV~~~~aL~vvnR~~v~yK~KvRimDlT~aL~~G~qlA~Pt~ 845 (845)
T d2btva_ 801 IVERVRVGQILAVLNRRFVAYKGKMRIMDITQSLKMGTKLAAPTV 845 (845)
T ss_dssp CSEEECSTTSGGGGCSEEEEECTTSEEECCGGGGGCEEECCCCCC
T ss_pred CEEEECCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCHHCCCCC
T ss_conf 524423210899988888874534289887887650000116889
|
| >d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Glycogen phosphorylase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=0 Score=62817.48 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~y~al~~~vrd~l~~~w~~t~~~~~~~~~k~vyYlS~Efl~ 80 (824)
T d2gj4a1 1 QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYM 80 (824)
T ss_dssp CCGGGCCCCHHHHHHHHHHHHHHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHC
T ss_conf 95656567778999999999999998627892559989999999999999999999999999851598379997410204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Gr~L~nnl~nlg~~~~~~~al~~~g~~l~~i~~~E~da~LGnGGLGrLAgd~LkSaAdLglP~~G~GL~Y~~GyF~Q~I~ 160 (824)
T d2gj4a1 81 GRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIC 160 (824)
T ss_dssp ECCHHHHHHHHTCHHHHHHHHHHTTCCHHHHHTTSCCEEECCSHHHHHHHHHHHHHHHTTCCEEEEEECCSBCSCEEEEE
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEE
T ss_conf 36578898867878999999998099999998537787788851899999999999868989699970707888499987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 dG~Q~E~~d~w~~~~~Pwe~~r~~~~~~v~f~g~v~~~~~~~~w~~~~~V~avpydv~i~g~~~~~vn~lRlW~a~~~~~ 240 (824)
T d2gj4a1 161 GGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPND 240 (824)
T ss_dssp TTEEEEECCCTTTTCCTTCEECGGGCEEEEESCEEEECSSSEEEESCEEEEEEEEEEEEECSSSSCEEEEEEEEEECCC-
T ss_pred CCEEEECCCCCCCCCCCCEEECCCCEEEEECCCEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEECCCCC
T ss_conf 99378768864567997234025524687337656533765544475589998666689603676068999885136732
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 f~~~~~~~G~~~~~lld~~~~eni~~~ly~~d~ly~G~~lRl~Qqy~l~~~g~~~ilr~~~~~~~~~~~~~~~~~~~~~~ 320 (824)
T d2gj4a1 241 FNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPD 320 (824)
T ss_dssp ---------CHHHHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----------CGGGHHH
T ss_pred CCCCCCCCCCHHHHHHHHCCHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCC
T ss_conf 33010026858888774210005310168865666766888999999898899999999975156643334454223252
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~vihlNegHpa~ai~ElmR~l~d~~gl~~d~A~e~v~~~~~fTtHTpvpag~E~f~~~l~~~~lpr~~~ii~ei~~~fl 400 (824)
T d2gj4a1 321 KVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFL 400 (824)
T ss_dssp HEEEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11320257731748999999999860999999999864018888336866751850799999985877655536679999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~d~~~~~~l~ii~e~~~~~~~Ma~Lal~~S~~vNGVSklH~ev~~~~~~~~~~~~~p~ki~~iTNGV~~rrW 480 (824)
T d2gj4a1 401 NRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRW 480 (824)
T ss_dssp HHHHHHSTTCHHHHHHHCSEECSSSCEEEHHHHHHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCC
T ss_pred HHHHHHCCCCHHHHHHCCCCCCCCCCEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCC
T ss_conf 99998789968888531121135885535999999864267889999999999764356566787240266475157611
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 l~~~np~L~~l~~~~ig~~w~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ldp~~lfd~~arRfh 560 (824)
T d2gj4a1 481 LVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIH 560 (824)
T ss_dssp CCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCC
T ss_pred HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECH
T ss_conf 31169779998775434432259899999887389899999999999982899999999983877896411013100002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 eYKRq~Ln~~~i~~ly~rlk~~~~~~~~P~q~IFaGKAhP~d~~gK~iIk~I~~va~~in~dp~~~~~lkVvFlenY~v~ 640 (824)
T d2gj4a1 561 EYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVS 640 (824)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCCHH
T ss_conf 33334566765899998765345678887499980788976388999999999999987418112153448870787669
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 lA~~li~g~Dvwln~p~~~~EASGTSgMK~alNGal~lstlDGwnvEi~~~vg~~N~~~fG~~~~ev~~~~~~~y~~~~~ 720 (824)
T d2gj4a1 641 LAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEY 720 (824)
T ss_dssp HHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCHHHH
T ss_conf 99975114344131899973457750458997598356356635899998647566798179715555776557898999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 y~~~~~l~~v~d~i~~~~~~~~~~~~f~~l~~~l~~~D~y~v~~Df~~y~~~q~~v~~~Y~d~~~W~~~~~~nia~~g~F 800 (824)
T d2gj4a1 721 YDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKF 800 (824)
T ss_dssp HHHCHHHHHHHHHHHHTTTCTTSTTTTHHHHHHHHHCCTTCTGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCGGG
T ss_pred HHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 75399999999985026678887046788999885377045541289999999999986319999999999998658980
Q ss_pred -----------------------C
Q ss_conf -----------------------9
Q 000235 1717 -----------------------A 1717 (1815)
Q Consensus 1717 -----------------------~ 1717 (1815)
+
T Consensus 801 ssdR~i~eY~~~iw~~~P~~~~~p 824 (824)
T d2gj4a1 801 SSDRTIAQYAREIWGVEPSRQRLP 824 (824)
T ss_dssp BHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 728899999997019730789998
|
| >d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Formate dehydrogenase N, alpha subunit species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=62268.00 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~k~v~s~C~~C~~gCgi~v~v~~dg~~~~~~kiv~ieGdpd~Pvn~G~lC~KG~a~~~~vy~pdRL~~PL~ 80 (817)
T d1kqfa2 1 QARNYKLLRAKEIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYVNSENRLRYPEY 80 (817)
T ss_dssp CCCCCTTTTSEEEEEECSSBTTCCEEEEEEESCSCTTSCCEEEEEEECTTCTTTTTCCCHHHHTTHHHHTCTTBCCSCEE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEECCCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCCCHHCCCEE
T ss_conf 98767011573870699788057983999966871432314999678998886683788857767997659754049879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 R~rG~g~w~~ISWDEAld~IA~klk~ird~~g~e~~~~g~~~~~~~~~~~~~s~~~~ne~~~l~~kf~~~lGt~nid~~a 160 (817)
T d1kqfa2 81 RAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQA 160 (817)
T ss_dssp ECTTCSSCEECCHHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGG
T ss_pred EECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 71699986573799999999999999987633202356632233443346862687838999999999972999658887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~C~~~~~~gl~~~~G~g~~t~~~~D~~nad~Ili~G~Npae~hp~~~~~~~~a~k~~GaklIvVDPR~t~tAa~AD~wl 240 (817)
T d1kqfa2 161 RVCHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYA 240 (817)
T ss_dssp GGTTHHHHHHHHHHHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEE
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEECCCHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHC
T ss_conf 65378999999987458988888778614867999357703118325556777763158740331021235665400112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 pIRPGTD~All~gmi~~Iie~~l~d~efv~~~Tna~~lv~~d~~f~dg~f~g~d~~~~~~d~~sw~~~~~~~g~~~~d~t 320 (817)
T d1kqfa2 241 PIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLDENGYAKRDET 320 (817)
T ss_dssp CCCTTCHHHHHHHHHHHHHHTTCSCHHHHHHHBSTTBBBCTTCCEETTEETTEETTTTEECCTTSSBCBCTTSSBCBCTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 66446658999999999998798559999987165300001112111343442055543201331001244554234432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~vf~lLk~~~~~yTpE~va~itGvp~e~I~~lA~~~a~~~~~~k~~~i~~~~G~tqh~~G~~~ira~~~L~lL~G 400 (817)
T d1kqfa2 321 LTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLG 400 (817)
T ss_dssp SCSTTBHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEESHHHHSSTTHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 23300489999999885799999761399899999999999975234651588604553437775188999999999735
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 niG~~GgGv~~lrG~~nvqG~~d~g~l~~~lpgy~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~k~~~ 480 (817)
T d1kqfa2 401 NMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSLMKSFY 480 (817)
T ss_dssp CTTCTTCSEEECCCBTTHHHHHHTTCSTTEEGGGEECCBTTCCSHHHHHHHHSCCCSSSSCCCGGGGHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 57888860467524567556524254777788766687144200344202357543331102443236302367766422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 g~~a~~e~~~g~~~lp~~~~~~~~~~~~~~~~~G~ik~l~v~g~NP~~s~pn~~~~~~aL~kLd~lVv~D~f~tETA~fa 560 (817)
T d1kqfa2 481 GDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSKLKYMVVIDPLVTETSTFW 560 (817)
T ss_dssp GGGCCGGGGGGGGGSCCBSSCCCHHHHHHHHHTTCCCEEEEESCCHHHHSSSHHHHHHHHTTCSEEEEEESBCCTTTTTT
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCHHHHCCCHHHHHHHHHCCCEEEEEECCCCHHHHHH
T ss_conf 21011333048666765446666999997664487259999478988808787899999966991999617768567765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~~~~~~divLPaa~~~Ek~Gt~tns~r~vq~~~kav~P~Geak~D~~I~~~La~rl~~l~~~~~g~~~~ 640 (817)
T d1kqfa2 561 QNHGESNDVDPASIQTEVFRLPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVE 640 (817)
T ss_dssp SCCGGGGCCCGGGCCCEEEEEEBCCGGGSCEEEECTTCEEEEECCCSCCSTTCBCHHHHHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 42455344565444443499368865446761353787555002551887788579999999999999999864698635
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~~~w~y~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~g~~~~~~~~l~~dgt~~~~~~iy~g~~~~~~~~~~~r 720 (817)
T d1kqfa2 641 PLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYTGSWTEQGNQMANR 720 (817)
T ss_dssp HHHHSCCCCSSTTSCCHHHHHHHHHCEESSCEECTTSCEEECTTCBCSCGGGCCSSSSEECSCGGGTTSEETTEEGGGCB
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 66358768999888999999987689613334356674314777656777986578885312078853447545602038
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~~~~~~~~~~~~~w~~~wp~n~r~~ynr~s~~~~g~p~~~~~~~~~w~~~~w~~~d~~d~~~~~~~~~~~~f~~~~~g~~ 800 (817)
T d1kqfa2 721 DNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMG 800 (817)
T ss_dssp CCCCTTSSSCCTTBSEETTTTCSSTTGGGGBCTTSCBSSTTSCCEEECSSSEEESSCCSSCSCCTTSSCCSCTTSTTSSB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCE
T ss_conf 98875656788882320542001232102579999989987864887798176458899989999899999277766636
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000235 1717 ----------------A 1717 (1815)
Q Consensus 1717 ----------------~ 1717 (1815)
.
T Consensus 801 ~~~~~~~~~~gp~p~~y 817 (817)
T d1kqfa2 801 RLFAINKMAEGPFPEHY 817 (817)
T ss_dssp CSSCTTCSTTCSSCCCC
T ss_pred EEECCCCCCCCCCCCCC
T ss_conf 44448877789999989
|
| >d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Tungsten containing formate dehydrogenase, large subunit species: Desulfovibrio gigas [TaxId: 879]
Probab=100.00 E-value=0 Score=61882.73 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~k~t~SvC~~C~~gCgi~v~v~~kdGkvv~IeGdpd~PvN~G~lC~KG~s~~~~vy~pdRL~~PL~R~rG~ 80 (812)
T d1h0ha2 1 ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEGSLCAKGASTWQLAENERRPANPLYRAPGS 80 (812)
T ss_dssp CCCCCTTTTSEEEEEECSSBTTCCEEEEEECTTTCCEEEEEECTTCTTTTTCCCHHHHTHHHHHSCTTSCSSCEEECTTC
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCCCCCCCCEEECCCC
T ss_conf 98776777760886886988057986999995589999988289887558388886775799764976146887730699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 g~w~~ISWDEAld~IA~klk~ird~~~~~~~~~g~~v~~~~~i~~~gs~~~~ne~~~l~~kf~~~lGt~ni~~~~~iC~~ 160 (812)
T d1h0ha2 81 DQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARICHS 160 (812)
T ss_dssp SSCEECCHHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTH
T ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 98456489999999999999999975321246653224676058874277672889999999998299975888874358
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~gl~~tfG~g~~tn~~~Di~nad~Il~~G~Npae~~p~~~~~i~~a~~rGaklIvVDPR~t~TAa~AD~wipIrPGT 240 (812)
T d1h0ha2 161 ATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGS 240 (812)
T ss_dssp HHHHHHHHHHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEECCCTTC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHCCHHHHCCCCC
T ss_conf 99999999828898887888873173899862554222256778888765023452002564342013200344317895
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 D~All~gmi~~Il~~~l~d~dfv~~yTna~~lv~~~~~~~~glf~g~d~~~~~~d~~~w~~~~d~~g~~~~d~~~~~~~~ 320 (812)
T d1h0ha2 241 DIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNPKRDETLKHPRC 320 (812)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHBGGGBBBCTTCCEETTEETTEETTTTEECGGGGCBCBCTTSCBCBCTTSCSTTB
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 39999987899987587257999987275200144532013333022224433211001211112467443432124304
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 vf~~Lk~~~~~yTpe~va~itGVp~e~I~~vA~~~a~~~~~~~~~~i~~g~G~tqh~~g~~~ira~~~L~lLlGniG~pG 400 (812)
T d1h0ha2 321 VFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAG 400 (812)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHGGGSTTCCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTCSSSTT
T ss_pred HHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999874799999885499899999999999984688883799936643445417799999999999858946689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 GGi~~lrG~~nvqG~~d~g~~~~~lPgy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~k~~~~~a~~~ 480 (812)
T d1h0ha2 401 GGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWPDADLN 480 (812)
T ss_dssp CSEEECCSBTTHHHHHHTTCBTTEETTTEECCBTTCCSHHHHHHHHCCCCCCTTCCCGGGGHHHHHHHHHHHHCTTSCHH
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 61111468777767501022666786544665444430566654126433453101223356303578888644554322
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~lp~~~~~~~~~~~~~~~~~~~G~ik~l~~~g~NP~~s~pn~~~~~~aL~kLd~lVv~D~~~teTA~fad~~~~~~ 560 (812)
T d1h0ha2 481 EAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETGSFWRGPDMDP 560 (812)
T ss_dssp HHHHHSCCBCTTCCCSHHHHHHHHHTTCCCEEEEESCCHHHHSBSHHHHHHHHTTCSEEEEEESSCCTTTTGGGSTTCCG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCCCC
T ss_conf 12475666566788659999987655994699994889787385889999999779918999466583477652346665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~i~~~divLPaa~~~Ek~Gt~tNs~r~vq~~~kav~P~gear~D~~I~~~La~rL~~l~~~~~~~~~~~i~~~~w~y~~ 640 (812)
T d1h0ha2 561 KKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWV 640 (812)
T ss_dssp GGCCCEEEEEEBCCGGGCCEEEECTTCEEEEECCSSCCCTTCBCHHHHHHHHHHHHHHHHHHSCTTCCHHHHHSCGGGGB
T ss_pred CCCCCCEEEECCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCC
T ss_conf 44555459989998655688753686614532346699401579999999999999999862888450346646843135
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~~~~~~~~~~~~ng~~~~d~~~~~~~~~~g~~~~~~~~l~~dg~t~~~~~~y~g~~~~~~~~~~~r~~~~~~~~~~~ 720 (812)
T d1h0ha2 641 NDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKI 720 (812)
T ss_dssp CTTSCBCHHHHHHHHHCBBSSCEEETTEEECTTCBCSCGGGCCTTSCBCCSSGGGTTSEETTEEGGGCBCCCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 77798899999998559704667765531466888665143157876011046886035876522214788887765555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 ~~~~~~~~~wp~n~r~~ynr~s~d~~g~p~~~~~~~~~w~~~~~~w~~d~~d~~~~~~~~~~~~~~~f~~~~~g~~~~~~ 800 (812)
T d1h0ha2 721 GLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFIMKPEGYAYLYG 800 (812)
T ss_dssp TCCTTBSEETTTTCSSTTGGGGBCTTSCBSCGGGCSEEEETTTTEEEESCCSSCSCCTTCTTTCCCSCTTSSSSCBCSSC
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECC
T ss_conf 56689756375300133112136888998898877589888788302238998989999986789883777777563457
Q ss_pred -----------C
Q ss_conf -----------9
Q 000235 1717 -----------A 1717 (1815)
Q Consensus 1717 -----------~ 1717 (1815)
.
T Consensus 801 ~~~~~gp~p~~y 812 (812)
T d1h0ha2 801 PGREDGPLPEYY 812 (812)
T ss_dssp TTSTTCSSCCCC
T ss_pred CCCCCCCCCCCC
T ss_conf 998789999989
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=0 Score=61662.67 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~e~~~~~d~~~l~~rq~aFGyt~Ed~~~il~PMa~~g~EpigSMG~DtPLAvLS~~~r~l~~YFkQ~FAQVTNPPID~i 80 (809)
T d1ofda2 1 FAEKTLFNDAQTVLQQQAAFGYTAEDVEMVVVPMASQGKEPTFCMGDDTPLAVLSHKPRLLYDYFKQRFAQVTNPPIDPL 80 (809)
T ss_dssp CCCSCSCSCHHHHHHHHHHTTCCHHHHHHTHHHHHHHSSCCEECSCCCSCCTTTCSSCCCGGGGEEECCCCSSSCCCCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCHH
T ss_conf 99755578989999999982899999999999998558851045877747672369988851004536564788986677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 RE~~VmSl~~~lG~~~Nil~~~~~~~~~l~l~sPiLs~~el~~i~~~~~~~~~i~~~f~~~g~~~L~~aL~~l~~ea~~A 160 (809)
T d1ofda2 81 RENLVMSLAMFLGKRGNLLEPKAESARTIKLRSPLVNEVELQAIKTGQLQVAEVSTLYDLDGVNSLEDALTNLVKTAIAT 160 (809)
T ss_dssp TTGGGCBCCEEESCCCCSSSCCGGGGCEEEESCSBCCHHHHHHHHHSSSCEEEEECEEECSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 76424315541158877899997777869979970699999999728996279867851775078999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 V~~G~~ilILSDR~~~~~i~~~~~~IP~lLAv~AVH~~Lir~gLR~~~sLVveSGe~revHh~A~LiGyGA~AVnPYLA~ 240 (809)
T d1ofda2 161 VQAGAEILVLTDRPNGAILTENQSFIPPLLAVGAVHHHLIRAGLRLKASLIVDTAQCWSTHHFACLVGYGASAICPYLAL 240 (809)
T ss_dssp HHTTCSEEEEESSGGGCCCCTTEEECCHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCSHHHHHHHHHTTCSEEECHHHH
T ss_pred HHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 97799489970666555457774423299999999999997287740134442488887777698871438877689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 eti~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ny~kAi~kGLLKIMSKMGISTl~SYrGaqiFEaIGLs~evvd~~F~gt~ 320 (809)
T d1ofda2 241 ESVRQWWLDEKTQKLMENGRLDRIDLPTALKNYRQSVEAGLFKILSKMGISLLASYHGAQIFEAIGLGAELVEYAFAGTT 320 (809)
T ss_dssp HHHHHHHSCHHHHHHHTTSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCCEEESSBCHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCC
T ss_conf 99999863112333332167666899999999999999999999977333453232010010100424788999864110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 SrI~Gigl~~I~~e~~~rh~~a~~~~~~~L~~gG~y~~R~~GE~H~~nP~~i~~LQ~avr~~~~~~~~n~~~~Y~~y~~~ 400 (809)
T d1ofda2 321 SRVGGLTIADVAGEVMVFHGMAFPEMAKKLENFGFVNYRPGGEYHMNSPEMSKSLHKAVAAYKVGGNGNNGEAYDHYELY 400 (809)
T ss_dssp CTTCCBCHHHHHHHHHHHHHHHC----CCCCCCSSSSCCTTSSCCSCCHHHHHHHHHHHHHC------------CHHHHH
T ss_pred CHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 01057789999999999997640222477666665355326655689989999999988865420244677789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~lR~Ll~~k~~~~pIpldeVEp~~~I~k~f~~~aMS~GslS~~a~~ala~aa~~~G~~~ntGEGG~~~~~ 480 (809)
T d1ofda2 401 RQYLKDRPVTALRDLLDFNADQPAISLEEVESVESIVKRFCTGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVR 480 (809)
T ss_dssp HHHHHTCCSCSGGGGEEECCSSCCCCGGGSCCHHHHHTTEECCCBCTTTSCHHHHHHHHHHHHHHTCBCEECTTCCCGGG
T ss_pred HHHHHCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCEE
T ss_conf 99986178025787754302579987443321654212202455554455689999999999971865337888888456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~i~q~asgrfGv~~~~l~~~~~ieIK~~QGAKPG~GG~Lpg~KVt~~IA~ 560 (809)
T d1ofda2 481 YLTLDDVDSEGNSPTLPHLHGLQNGDTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVSEYIAM 560 (809)
T ss_dssp GSCCCCCCTTSCCTTSTTCCSCCTTCCCCCSEEEECTTCTTCCHHHHHHCSEEEEECCCTTSTTSCCEECGGGCCHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCHHHCCHHHHH
T ss_conf 53267643325765432234655788773456752200258775552254327898721455665521343104788881
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~R~~~~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~ 640 (809)
T d1ofda2 561 LRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPL 640 (809)
T ss_dssp HHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEH
T ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCH
T ss_conf 11789998878988788888999999999999971799965999955437089998776347988998378876654667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~ 720 (809)
T d1ofda2 641 SSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPV 720 (809)
T ss_dssp HHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHCCCCCCC
T ss_conf 78860885489999999999997699874499981898889999999982889266748999998789967627998998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 721 GIaTqd~~l~~~~~~~~~~v~n~~~~~~~e~~~~~a~~G~~s~~elvGr~dll~~~~~~~~~~~~~l~~~~ll~~~~~~~ 800 (809)
T d1ofda2 721 GVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGRTDLLKVRSDVQLSKTQNLTLDCLLNLPDTKQ 800 (809)
T ss_dssp SSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTCGGGEEECSSCCCSSSSCCCCHHHHCCCCCSS
T ss_pred CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHCCCCCCHHHCCCCHHHHHCCCCCCC
T ss_conf 41478988984476727999999999999999999997699978934747654104432313224878799836898545
Q ss_pred --------C
Q ss_conf --------9
Q 000235 1717 --------A 1717 (1815)
Q Consensus 1717 --------~ 1717 (1815)
+
T Consensus 801 ~~~~~~~~p 809 (809)
T d1ofda2 801 NRQWLNHEP 809 (809)
T ss_dssp CCGGGCCCS
T ss_pred CCCCCCCCC
T ss_conf 875546897
|
| >d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Maltodextrin phosphorylase (MALP) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=60654.85 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~~~~vrd~l~~~w~~~~~~~~k~v~Y~S~Efl~Gr~l~n~l~n 80 (796)
T d1l5wa_ 1 SQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLN 80 (796)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTCSSGGGCCHHHHHHHHHHHHHHHHHTSCCCCCCSSCCEEEEECSCCCCCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHCCHHHHHHHHH
T ss_conf 99877899999999999999837897777989999999999999999999861146875699980012045556878885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 lgi~~~~~~al~~lg~~~~~~~~~E~d~~LgnGGLG~LAgd~lkSaadLglP~vGvGLlY~~GyF~Q~i~dG~Q~E~~d~ 160 (796)
T d1l5wa_ 81 LGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDD 160 (796)
T ss_dssp HTCHHHHHHHHHTTTCCHHHHHTTCCCCCCCCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCC
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCEEEECCCC
T ss_conf 78789999999980999999985576888888538999999999999689797999707178885999989978777998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 w~~~~~P~~~~~~~~~~~v~~~g~v~~~~~w~~~~~V~a~~~d~~v~g~~~~~v~~LrLw~a~~~~~~~~~~~~~~d~~~ 240 (796)
T d1l5wa_ 161 WHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLR 240 (796)
T ss_dssp CCGGGCTTCEECGGGCEEEEESCEECTTSCEECSEEEEEEEEEEEEECSSSCCEEEEEEEEEECSSCCCHHHHHTTCTTG
T ss_pred CCCCCCCEEECCCCCEEEEEECCEEEECCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHH
T ss_conf 66689961652566138984136895237404752899886354664046886268884203467654422455666788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~n~~~~r~IT~~LY~~D~~~~gkelRl~Qe~~l~~~g~~~l~r~~~~~~~~~~~~~~~~vihlNEgHpafai~El~R~ 320 (796)
T d1l5wa_ 241 AEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRV 320 (796)
T ss_dssp GGHHHHHHHGGGTCSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHEEEEEESSTTTTHHHHHHHH
T ss_pred HHHCHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf 87551656133557489985320388999988863205799999987653899577230354650362277789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~d~~gl~~~~A~e~vr~~~~fTtHTpvpag~e~fp~~li~~~l~~~~~~i~~i~~~fl~~~~~~~~~d~~~~~~~~~~~ 400 (796)
T d1l5wa_ 321 LIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVH 400 (796)
T ss_dssp HHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHCSEE
T ss_pred HHHHCCCCHHHHHHHHHCEEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHC
T ss_conf 98722898999999752517874157864532662799999983889877767659999999987899588885202210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~Ma~LAl~~S~~vNGVSklH~ev~~~~~~~~~~~~~p~~i~~ITNGVh~~~Wl~~~n~~L~~l~~~~ig~~w~~~~ 480 (796)
T d1l5wa_ 401 DKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDL 480 (796)
T ss_dssp TTEEEHHHHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCH
T ss_conf 66632699999860466799999999999875331255687664344566157788743278999998764565213477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~l~~~~~~~~d~~~~~~l~~~k~~~K~~L~~~i~~~~g~~ldp~~LtigfaRRfa~YKR~~L~~~~i~~l~~~l~~~~~ 560 (796)
T d1l5wa_ 481 DQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQ 560 (796)
T ss_dssp GGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88998886368799999999999999999999999852963585651403434544431453035359999999850864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~Pvq~IfaGKAhP~d~~gK~iIk~I~~va~~in~dp~~~~~~kVVFlenYdv~lA~~lv~g~DVwln~p~~p~EASG 640 (796)
T d1l5wa_ 561 ADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASG 640 (796)
T ss_dssp CCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCHHHHHHHHCCCCHHHHCCCCCCCCCC
T ss_conf 57786599974888983178999999999999986178554363338980787568999874401265409998734578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 TSgMKaalNG~lnlstlDGw~vE~~~~vg~eN~f~fG~~~~ev~~~~~~~y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~ 720 (796)
T d1l5wa_ 641 TGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDK 720 (796)
T ss_dssp SHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTTTTCT
T ss_pred CHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCH
T ss_conf 26779998597166046644798888637453688068667778877547786887622999999999863278788985
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 721 ~~f~~l~~~l~~~~~D~y~~~~df~~y~~~q~~v~~~Y~d~~~W~~~~~~nia~~g~FssdR~i~eYa~~iw~~~~ 796 (796)
T d1l5wa_ 721 HAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR 796 (796)
T ss_dssp TTTHHHHHHTSTTTCCTTCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHCGGGBHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 7899999987432797045451189999999999986309999999999997379975728789999999747689
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=100.00 E-value=0 Score=60503.32 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~d~veDl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy 80 (794)
T d2mysa2 1 DAEMAAFGEAAPYLRKSEKERIEAQNKPFDMNPPKYDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPY 80 (794)
T ss_dssp CCSTTSSTTSHHHHCCCTTTTHHHHSSCCCCCCTTSSSCSBGGGCSCCCHHHHHHHHHHTTTTTCCEEECSSCEEEECCS
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEEECCC
T ss_conf 95177620057775053766656515887899863347631007887988999999999976899624578889997899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 k~l~ly~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~~~~~~~~~~~~~ 160 (794)
T d2mysa2 81 KWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKEE 160 (794)
T ss_dssp SCCGGGCTTHHHHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHHHHTCCCC-----
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88999999999997089889999808999999999998749980799971798878999999999999870778775311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~~ylLEksRv~~~~~gErnfHIFY 240 (794)
T d2mysa2 161 QSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAERSYHIFY 240 (794)
T ss_dssp ------CCHHHHHHHHHHHHHHHHEECCSSCSSEECSEEEEEEEECSSSSEEECCEEEECCCGGGGTCCCTTCCCBHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEEEECCCCCEEEEEEEEEECCCCEEEECCCCCCCHHHHH
T ss_conf 13555674999999762699985487556668720111013667779997866899998537853773476544199999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 qll~g~~~~~~~~~~l~~~~~~y~yl~~~~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~i~~ilaaILhLGni~f~~~ 320 (794)
T d2mysa2 241 QIMSNKKPELIDMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTGAVMHYGNLKFKQK 320 (794)
T ss_dssp HHTTCSSHHHHHHHTCCSCGGGCGGGCSSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99839999999986268987772331799804699776999999999999809999999999998888751011167524
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~a~LLgi~~~~L~~~L~~~~~~~~~e~i~~~l~~~~a~~~rdalaK~LY~~LF~wiV~~IN~~l 400 (794)
T d2mysa2 321 QREEQAEPDGTEVADKAAYLMGLNSAELLKALCYPRVGVGNEAVTKGETVSEVHNSVGALAKAVYEKMFLWMVIRINQQL 400 (794)
T ss_dssp TTSCCEEESCSSHHHHHHHHHTCCHHHHHHHHHSCBCCCSSSCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77421223663799999988197988953041056898336650463889999889998999999999999998766320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQq~f~~~~F~~Eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~kp 480 (794)
T d2mysa2 401 DTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKP 480 (794)
T ss_dssp CCSSCCCEEEEEEEEECCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSTHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 66777651789853255554456638899999999999999999999989999975487765677779879999998485
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~Gil~lLdee~~~~~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ 560 (794)
T d2mysa2 481 MGIFSILEEECMFPKATDTSFKNKLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNETVIG 560 (794)
T ss_dssp TSHHHHHHHHTTCTTCCHHHHHHHHHHHHBTTBSSEECCCCC---CCCSEEEECSSCEEEECCSSHHHHHHCCCCHHHHH
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEHHCCHHHHCCCCCCHHHHH
T ss_conf 32799998861476651889999999873578856368875678788716898307636044126577555844379999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~Tv~~~fr~sL~~L~~~L~~t~~hFIRCIKPN~~k~p~~Fd~~ 640 (794)
T d2mysa2 561 LYQKSSVKTLALLFATYGGEAEGGGGKKGGKKKGSSFQTVSALFRENLNKLMANLRSTHPHFVRCIIPNETKTPGAMEHE 640 (794)
T ss_dssp HHHTCSSHHHHHHTSCC--------------------CCSHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHH
T ss_conf 99867988999866402443335667768777787524089999999999999875689868886468865587643569
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~V~~QLr~~GvLE~vri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~iGkTKVFlr~ 720 (794)
T d2mysa2 641 LVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKA 720 (794)
T ss_dssp HHHHHHHHHSHHHHHHHHTTSCCCEEEHHHHHHHHGGGTTTC------CCTTHHHHHHTTSSSCCSSSEEEETTEEEECT
T ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEECC
T ss_conf 99999986278999999966898636499999999985834244556689999999999966978135871797598674
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 721 ~~~~~LE~~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~~~rl~~ki~pll~ 794 (794)
T d2mysa2 721 GLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK 794 (794)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 39999999999999999999999999999999999999999999999999999999823699999998664119
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=100.00 E-value=0 Score=60117.23 Aligned_cols=1 Identities=0% Similarity=-1.192 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~ 80 (789)
T d1kk8a2 1 MNIDFSDPDFQYLAVDRKKLMKEQTAAFMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRR 80 (789)
T ss_dssp CCCCCSCGGGTTTCCCSSSSCC--CCCCCCCGGGTTCSBGGGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSC
T ss_pred CCCCCCCCCCCEEEECHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCC
T ss_conf 98667798766676244440560223436985235863100689999899999999998689963718888999889988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 l~iy~~~~~~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~~~~ 160 (789)
T d1kk8a2 81 LPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEAS 160 (789)
T ss_dssp CSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC-----
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89999999999708987899983899999999999971899479997089998799999999999987156666554345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGk~~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~gErnfHIFY~l 240 (789)
T d1kk8a2 161 DKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQI 240 (789)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHH
T ss_conf 55556399999987689985535678898964772356798988999774540278648775046326544206999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~G~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~ 320 (789)
T d1kk8a2 241 CSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPR 320 (789)
T ss_dssp TSCSSGGGHHHHTCCSCGGGCTTTCSSCSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC---
T ss_pred HCCCCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 82897999998379982544576539983668865699999999998753998999999998889875104403541587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~a~LLgi~~~~L~~~l~~~~~~~~~e~i~~~l~~~~a~~~rdalaK~lY~~LF~wIV~~IN~~L~~ 400 (789)
T d1kk8a2 321 EEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDT 400 (789)
T ss_dssp -CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54221488689999998849997774203167777606674433799899999999999999999999999876643077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~Y~~EgI~~~~i~~~~n~~~~~~l~~~~~G 480 (789)
T d1kk8a2 401 KAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMG 480 (789)
T ss_dssp CCCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHSTTS
T ss_pred CCCCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 77765278873025423047686999999999999999998999999999998617785578757888999998708744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ll~lLdee~~~~~~td~~~l~kl~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~l~~ 560 (789)
T d1kk8a2 481 ILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVA 560 (789)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEECCCHHHHHHHHHHHHHHH
T ss_conf 78898765157888778999999987447775535888655544688843675168854521457587603044599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~Tv~~~Fr~sL~~L~~~L~~t~~hFIRCIKPN~~k~p~~Fd~~~V~ 640 (789)
T d1kk8a2 561 LLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVL 640 (789)
T ss_dssp HHHTCSSHHHHHHTCC------------------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHH
T ss_pred HHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 99957659999985273223445677788777753089999999999999875479769994277554687565879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~QLr~~Gvle~vrirr~Gyp~R~~f~eF~~ry~~L~~~~~~~~~~~~k~~~~~il~~~~~~~~~~qiGkTkVFlr~~~~~ 720 (789)
T d1kk8a2 641 HQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLG 720 (789)
T ss_dssp HHHTTSSSCC-----CCCSCEEEEHHHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHH
T ss_pred HHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEECCCEEEECHHHHH
T ss_conf 99986264999999975787405499999999876834001567888999999999669881208843887997761999
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 721 ~LE~~r~~~l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~~~~~l~~kv~pll 789 (789)
T d1kk8a2 721 NLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 789 (789)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 999999999999999999999999999999999999999999999999999980369999998855579
|
| >d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium butyricum [TaxId: 1492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PFL-like glycyl radical enzymes superfamily: PFL-like glycyl radical enzymes family: PFL-like domain: Glycerol dehydratase DhaB1 species: Clostridium butyricum [TaxId: 1492]
Probab=100.00 E-value=0 Score=59888.67 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~t~Ri~~l~~~~~~~~p~i~~era~l~Te~~ke~~g~p~~irrAka~~~il~~~~i~I~d~ElIVG~~t~~~~ 80 (786)
T d1r9da_ 1 ISKGFSTQTERINILKAQILNAKPCVESERAILITESFKQTEGQPAILRRALALKHILENIPITIRDQELIVGSLTKEPR 80 (786)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHCCCBBCCHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSCCCCCTTCSSCCCSSSSTT
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCC
T ss_conf 98778998889999999986579844299999999999974999799999999999984598411899978656789877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~Pe~~~~~~~~el~~~~~r~~d~f~i~~e~~~~~~ei~~yW~gkt~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~g 160 (786)
T d1r9da_ 81 SSQVFPEFSNKWLQDELDRLNKRTGDAFQISEESKEKLKDVFEYWNGKTTSELATSYMTEETREAVNCDVFTVGNYYYNG 160 (786)
T ss_dssp BBCCCTTTCCHHHHHHTTTGGGCSSSCCBCCHHHHHHHHHHHHHTTTCSHHHHHHHHSCHHHHHHHTSSSEECHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCEECCCCCCCC
T ss_conf 40178625789999999876156778787898899999986266558959899988489999999967940057744256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~Gh~~~dY~~vl~~G~~gii~~~~~~l~~~~~~~~~~~~k~~fy~a~~i~~~a~~~~a~Rya~~a~e~A~~e~d~~rk~E 240 (786)
T d1r9da_ 161 VGHVSVDYGKVLRVGFNGIINEAKEQLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRKAE 240 (786)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 67686886999998899999999999862467883578899999999999999999999999999999874548999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 L~~iA~~~~~vp~~pp~tf~EAlQ~~wf~~l~~~~e~ng~~~s~GRlDq~L~Pyye~D~~it~eeA~ELl~~~~iK~~~~ 320 (786)
T d1r9da_ 241 LNEIAKICSKVSGEGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQYMYPYYENDKNITDKFAQELIDCIWIKLNDI 320 (786)
T ss_dssp HHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHCCCSCBCCBSHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHTTTB
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999997346456875799999999999999998637777688616888899998427889999999999899970552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~r~~~~~~~~~G~~~~~~~~iGG~~~dG~da~n~ls~l~L~a~~~l~~~~Pnltvr~~~~~P~~fl~~a~e~~~~G~g 400 (786)
T d1r9da_ 321 NKVRDEISTKHFGGYPMYQNLIVGGQNSEGKDATNKVSYMALEAAVHVKLPQPSLSVRIWNKTPDEFLLRAAELTREGLG 400 (786)
T ss_dssp CCCCCTTHHHHSCSSCCCCEEEECCBCTTSCBCCCHHHHHHHHHHHHHCCSCSEEEEEECTTCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 24546323202588874224888460798875668889999999986389999679997899999999999999755798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~P~~~NDd~~i~~l~~~G~~~edA~dY~~~GCve~~~~Gk~~~~~~~~~~Nl~k~le~aLn~G~d~~~~~~~~~~~~~~~ 480 (786)
T d1r9da_ 401 LPAYYNDEVIIPALVSRGLTLEDARDYGIIGCVEPQKPGKTEGWHDSAFFNLARIVELTINSGFDKNKQIGPKTQNFEEM 480 (786)
T ss_dssp CCEEEEHHHHHHHHHHTTCCHHHHHTCEEETTTEEECTTSEECCTTSEEEEHHHHHHHHHTTTBCSSSBCSCCCCCGGGC
T ss_pred CCEEECCHHHHHHHHHCCCCHHHHHCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 22021779899999976998788720334653045668776664741461299999999841767686658788995544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~sfee~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~p~p~~S~l~~~Cie~gkd~~~GGa~Yn~~~~~~~Gla~~~DSL~ 560 (786)
T d1r9da_ 481 KSFDEFMKAYKAQMEYFVKHMCCADNCIDIAHAERAPLPFLSSMVDNCIGKGKSLQDGGAEYNFSGPQGVGVANIGDSLV 560 (786)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHTSTTHHHHTCCTTTTCSSEEEECEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHCCHHHCCCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 89999999999999999999999987999999986720687500302185083354077632677754012999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 AIKklVfdek~~t~~el~~al~~nf~g~e~lr~~~~~~PKyGNddd~aD~ia~~i~~~~~~~v~~~~~~~g~~~~~~~~s 640 (786)
T d1r9da_ 561 AVKKIVFDENKITPSELKKTLNNDFKNSEEIQALLKNAPKFGNDIDEVDNLAREGALVYCREVNKYTNPRGGNFQPGLYP 640 (786)
T ss_dssp HHHHHTTTSCSSCHHHHHHHHHTTTTTCHHHHHHHHTSCCTTSCCHHHHHHHHHHHHHHHHHHTTCBCTTSCEECCBBCC
T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECEEC
T ss_conf 99887530355659999999723654289999984469988899837899999999999999972778889843202314
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~s~~v~~G~~tgATPDGR~aG~pla~G~sP~~G~D~~GptA~l~Svakl~~~~~~~G~~~n~k~~p~~l~~~~g~~~l~~ 720 (786)
T d1r9da_ 641 SSINVYFGSLTGATPDGRKSGQPLADGVSPSRGCDVSGPTAACNSVSKLDHFIASNGTLFNQKFHPSALKGDNGLMNLSS 720 (786)
T ss_dssp TTHHHHHHHTCCCCTTSCCTTCCCCCTTSCCTTTCCSCHHHHHHHHTTSCTTTCTTCBCCEEEECGGGGCHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHCCCCHHHHHHH
T ss_conf 45777445771249897778798999999888988755899999775257133789765435867044259633999999
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------------~ 1717 (1815)
-
T Consensus 721 lir~yf~~gg~hiq~Nvvd~etL~dAqk~PE~Y~~LiVRVaGYsa~Fv~L~~~~QdeII~RTehe~ 786 (786)
T d1r9da_ 721 LIRSYFDQKGFHVQFNVIDKKILLAAQKNPEKYQDLIVRVAGYSAQFISLDKSIQNDIIARTEHVM 786 (786)
T ss_dssp HHHHHHHTTCCEEEEEECCHHHHHHHHHCGGGGTTCEEECSSSEEEGGGSCHHHHHHHHHSCCBCC
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHCHHHCCCEEEEECCEEHHHHHCCHHHHHHHHHHHCCCC
T ss_conf 999999749927999946899999999595336982899473631363199999999999854579
|
| >d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Avian infectious bursal disease virus [TaxId: 10995]
Probab=100.00 E-value=0 Score=58968.03 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~liPk~~~P~~dp~~~~~~~A~~L~en~yr~lrPraiP~~e~~et~~~~p~l~~m~~~~~~~l~~tvsvP~Gt~~~iPkY 80 (774)
T d2pgga1 1 LLIPKVWVPPEDPLASPSRLAKFLRENGYKVLQPRSLPENEEYETDQILPDLAWMRQIEGAVLKPTLSLPIGDQEYFPKY 80 (774)
T ss_dssp CCSCCCCCCCCCTTCSHHHHHHHHHHTTCCBCCCCCEECCEEEEHHHHCGGGHHHHSSTTCCSCSEEEESCCSSEECCCB
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC
T ss_conf 97787778976865386999999985572342576788553246722101368888663223565142157875436554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 yP~hkp~~~~~~~~ppditllkql~y~~l~~~~~~e~~~~~~~llr~~i~~~~ygsGs~~Gq~~Rl~amkeVAtGrnpNK 160 (774)
T d2pgga1 81 YPTHRPSKEKPNAYPPDIALLKQMIYLFLQVPEANEGLKDEVTLLTQNIRDKAYGSGTYMGQATRLVAMKEVATGRNPNK 160 (774)
T ss_dssp CCCCSSCSSCTTSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78877775667889701778987688862068888678999999999998740267623669999998777750779899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~p~~~GyT~e~va~~ld~tlPi~pP~~dd~p~~~L~~~ls~~l~yt~~~s~~~~~~dyLP~it~kSsaGlP~igktKge~ 240 (774)
T d2pgga1 161 DPLKLGYTFESIAQLLDITLPVGPPGEDDKPWVPLTRVPSRMLVLTGDVDGDFEVEDYLPKINLKSSSGLPYVGRTKGET 240 (774)
T ss_dssp CGGGTTCCHHHHHHHHHHHSCCCCSSCSSSCCCCBTSCGGGGEEECSCSSSSCCEEECCCCCCTTSBCCGGGTTCBGGGG
T ss_pred CHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCH
T ss_conf 85663778999999999647788987788877663436688863377545655553237641032037997424436623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~al~~~d~flr~vs~~lkega~t~~s~~~~l~~~l~dywylscGlLFPK~ERY~~~~w~tKTRnIWSAp~pTHLlls~ 320 (774)
T d2pgga1 241 IGEMIAISNQFLRELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLLFPKAERYDKSTWLTKTRNIWSAPSPTHLMISM 320 (774)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSSCSSCHHHHHHHHHHHTGGGGEEEEEECCEEEEGGGTTTCCCEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 78899988899999999986133445781899999999888887530036402330676654313002577527787664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 iS~p~m~~s~nni~n~~~tpSLykFnPf~GGm~~iv~~iL~~~~~~~lvYADNiYI~~~ntWYSIDLeKGEANcTp~haq 400 (774)
T d2pgga1 321 ITWPVMSNSPNNVLNIEGCPSLYKFNPFRGGLNRIVEWILAPEEPKALVYADNIYIVHSNTWYSIDLEKGEANCTRQHMQ 400 (774)
T ss_dssp HHHHHHTTCCCSTTTSTTCCBCTTCCSTTTHHHHHHHHHHSSCCSEEEEETTEEEEEETTEEEEEEETTGGGGCCHHHHH
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCEEEECCCCEEEEECCCCCCCCCHHHHH
T ss_conf 15302104733011577985000568866528889887528998469997243798127747986543566568889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 a~~yyLLTRGWs~~G~P~fN~TWAt~am~~aP~mvVdsscllmNlQ~kt~GQGSGNawTFLnNHllStivv~kw~~~g~P 480 (774)
T d2pgga1 401 AAMYYILTRGWSDNGDPMFNQTWATFAMNIAPALVVDSSCLIMNLQIKTYGQGSGNAATFINNHLLSTLVLDQWNLMRQP 480 (774)
T ss_dssp HHHHHHHHHHSEETTEECBCHHHHHHHHHTHHHHHBSCEEEEBTEEEECCSBCTTSTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999997267768985635889999983186136422676520455678888873679999889999999999982799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~P~~~ef~~le~~tGInfKiEr~i~~l~~kl~ea~~~A~~Gyla~g~eP~~~~ptVelDlLGWsatyS~~~~~fvPvLd~ 560 (774)
T d2pgga1 481 RPDSEEFKSIEDKLGINFKIERSIDDIRGKLRQLVLLAQPGYLSGGVEPEQSSPTVELDLLGWSATYSKDLGIYVPVLDK 560 (774)
T ss_dssp CTTSHHHHTHHHHHTCCEEEEEEESSHHHHHHHHHHHCCSBTTBBSCCCSSCCCCEEEEETTEEEEECTTTSSEEEEECH
T ss_pred CCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCEECCCCH
T ss_conf 99952778799872876164102542799999999724875226888878899702443012045544331501024567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ERL~~SaAypkg~enktl~~k~gaeqayk~vryeAlrmVGgwnyPli~~a~~~~~~~~r~~l~~kg~~l~~~~~~w~~~s 640 (774)
T d2pgga1 561 ERLFCSAAYPKGVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYPLLNKACKNNAGAARRHLEAKGFPLDEFLAEWSELS 640 (774)
T ss_dssp HHHHHHHHSCCCC---------CHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHTTTCCHHHHGGGGGGGS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 77776521688987500003612899999999999999624564889999998789999999862688266899887515
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 eFge~~e~~sl~~~vt~q~l~~ln~~~p~~~p~v~~~~~t~~l~~v~~a~~~g~~k~~~~~~g~~~~~~~~srl~~~~r~ 720 (774)
T d2pgga1 641 EFGEAFEGFNIKLTVTSESLAELNKPVPPKPPNVNRPVNTGGLKAVSNALKTGRYRNEAGLSGLVLLATARSRLQDAVKA 720 (774)
T ss_dssp TTGGGTGGGCCCSCCSHHHHHHHHSCCCCCCCCCSSCCCTTCHHHHHHHHHTSCCCCTTHHHHHHHHHHHHBCTTCHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 34565407814422137899984089999998877755430189999987505436863222422223078899999998
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000235 1717 -----------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------~ 1717 (1815)
-
T Consensus 721 ~~~a~~~~~s~~d~~~~dw~~rt~~~~~~~~~~~~~~~~~~sal~e~~~al~~~ 774 (774)
T d2pgga1 721 KAEAEKLHKSKPDDPDADWFERSETLSDLLEKADIASKVAHSALVETSDALEAV 774 (774)
T ss_dssp HHHHHHHHHHSCSCTTSCHHHHHHHHHHHHHHTTCBCBTTBCHHHHHHHHHHCC
T ss_pred HHHHHCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 987414333676654342655226799999999999999899999987676319
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=100.00 E-value=0 Score=58740.40 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~q~aFGyt~Ed~~~il~pMa~~g~EpiGSMG~DtPlAvLS~~~r~l~~YFkQ~ 80 (771)
T d1ea0a2 1 TTHLDELVKTASLKGEPSDMDKAELRRRQQAFGLTMEDMELILHPMVEDGKEAIGSMGDDSPIAVLSDKYRGLHHFFRQN 80 (771)
T ss_dssp CBCTTHHHHHHHHTTCCCCCCTHHHHHHHHTTTCCHHHHHTTTHHHHHHSSCCEECSCCCSCCGGGCSSCCCGGGTEEEC
T ss_pred CCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCHHHCCCC
T ss_conf 91176545224666798889989999999983899999999999998558863056887726561269988740214557
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 FAQVTNPPID~iRE~~VmSl~~~lG~~~Nil~~~~~~~~~l~l~sPILs~~e~~~i~~~~~~~~~~id~~f~~~~g~~~L 160 (771)
T d1ea0a2 81 FSQVTNPPIDSLRERRVMSLKTRLGNLGNILDEDETQTRLLQLESPVLTTAEFRAMRDYMGDTAAEIDATFPVDGGPEAL 160 (771)
T ss_dssp CCCSSSCCCCTTTTGGGCCCCEEESCCSCTTCCSGGGSCSEEESCSBCCHHHHHHHHHHHGGGEEEEECEEESTTCTTHH
T ss_pred CCCCCCCCCCHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCHHHH
T ss_conf 56568898667775512315312479988899985679979928985489999999716899738999898577884899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~AL~~l~~eA~~AV~~G~~ilILSDr~~~~~~~~IP~LLAv~aVHh~Lir~gLR~~~sIIveSGeare~Hh~A~LiGyG 240 (771)
T d1ea0a2 161 RDALRRIRQETEDAVRGGATHVILTDEAMGPARAAIPAILATGAVHTHLIRSNLRTFTSLNVRTAEGLDTHYFAVLIGVG 240 (771)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTTCBTTEEECCHHHHHHHHHHHHHTTTCGGGCEEEEECSSCCSHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHEEECC
T ss_conf 99999999999999848992899823456642003678999888999999718775321677500355145504101025
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 A~AV~PYLa~e~i~~~~~~~~~~~~~~~~a~~ny~kAi~kGLlKIMSKMGIStl~SY~GaqiFEaiGLs~~vi~~~F~gt 320 (771)
T d1ea0a2 241 ATTVNAYLAQEAIAERHRRGLFGSMPLEKGMANYKKAIDDGLLKIMSKMGISVISSYRGGGNFEAIGLSRALVAEHFPAM 320 (771)
T ss_dssp CSEEECHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHTTSCCEEESSBCHHHHHHHSSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
T ss_conf 22248389999999987544135788999999999999999999987733323557777665300452267786416887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~Sri~Gigl~~i~~e~~~rh~~A~~~~~~~L~~gG~y~~r~~GE~H~~nP~~i~~LQ~A~r~~~y~~yk~y~~~i~~~~~ 400 (771)
T d1ea0a2 321 VSRISGIGLNGIQKKVLEQHATAYNEEVVALPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSYTTFKKYSEQVNKRPP 400 (771)
T ss_dssp CCSSCCBCHHHHHHHHHHHHHHHHSSCCSSCCCCCSSSCCSSSSCCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 87646668789999999999986134556678887256411797546788999999999850999999999999972436
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~LR~Ll~~~~~~~pI~i~eVE~~~~I~k~f~isaMSfGALS~~A~~aLa~ga~~~g~~~ntGEGG~~~~~~~~~~~~~~ 480 (771)
T d1ea0a2 401 MQLRDLLELRSTKAPVPVDEVESITAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDN 480 (771)
T ss_dssp CSGGGGEEECCSSCCCCGGGSCCHHHHHTTEEEEECCBTTBCHHHHHHHHHHHHHTTCEEECCTTCCCGGGSSBCTTSCB
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCHHHCCCCCCCCC
T ss_conf 78987676426899965444532222100302365345555799999999999961976563799988555012689864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~i~q~asgrfG~~~~~l~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA~~R~~~~G~~~iSP~~h~di~siedL~~ 560 (771)
T d1ea0a2 481 WNSAIKQVASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQ 560 (771)
T ss_dssp CCCSEEEECSSCTTCCHHHHTSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCSSHHHHHH
T ss_pred CCCCCCEECCCCCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 33210045577677697884333116776403455565430340227899997638999988557877888999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr 640 (771)
T d1ea0a2 561 LIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLR 640 (771)
T ss_dssp HHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999962799987999877674899999987358988997168876666667776068737999999999999976998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n~~~~~ 720 (771)
T d1ea0a2 641 HRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFL 720 (771)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCEEECCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf 75399970898889999999983789167769999996289851436998998430689889854667389999999999
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000235 1717 --------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------~ 1717 (1815)
.
T Consensus 721 ~~e~~~~~~~~G~~s~~~lvG~~dll~~~~~~~~~~~~ldl~~~l~~~~pg 771 (771)
T d1ea0a2 721 AEEVREILAGLGFRSLNEVIGRTDLLHQVSRGAEHLDDLDLNPRLAQVDPG 771 (771)
T ss_dssp HHHHHHHHHHHTCSCSGGGTTCGGGEEEC--------CCCCHHHHCCSSCC
T ss_pred HHHHHHHHHHHCCCCHHHHCCCHHHHHHCCCCHHHHHCCCCHHHHCCCCCC
T ss_conf 999999999975899889446354310155333444117806754779999
|
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=57882.67 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~k~~~~~~pkl~d~~~~g~~~~~~~~l~~~EGdSA~~~~~~g~~~~~rd~~~v~plrGK~lN~~~~~~~~~~~n~ei~~l 80 (760)
T d1bjta_ 1 RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAI 80 (760)
T ss_dssp CCCCCCSCTTCBCCTTTTSGGGGGCEEEEEESHHHHHHHHHHHHHHCSSSEEEEEEECCCCSCCC------CCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHCHHHHHH
T ss_conf 97646899876110003799831108999656375232337663216655788533872030236988888618999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~lG~~~~~~~~~~~~lrY~~i~imtDaD~DG~hI~~Lll~ff~~~~p~l~~~~g~i~~~~~Pl~~~~~~~~~~~~~~~ 160 (760)
T d1bjta_ 81 KKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAF 160 (760)
T ss_dssp HHHHTCCSSBCCSCSSSSSCSEEEEEEC-----CCHHHHHHHHHHHHBTTTTTSTTSEEECCCCSEEEEECSSCCEEEEE
T ss_pred HHHHCCCCCCCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCEEEE
T ss_conf 99978998988786001777867999889887047999999999986589724289899996893899846887503542
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 y~~~e~~~~~~~~~~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~F~k~~~d~RKewl~~~~ 240 (760)
T d1bjta_ 161 YNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYE 240 (760)
T ss_dssp SSHHHHHHHHHHTTTTSCEEECCCCCCSTTHHHHHHHHHHHHHHHHHHHHHCC---------------------CCCCSC
T ss_pred CCHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 02236889998706765542100466444560134777536000131157646125789999985224622789876224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~v~~~~~yhHGe 320 (760)
T d1bjta_ 241 PGTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGE 320 (760)
T ss_dssp C---------------CCTHHHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHHHHTCCSCEEHHHHHHHHHHHHTCCSSS
T ss_pred CCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 22112445465009999988899977887761387044223688899999998736898776032105244530577897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~sl~~aiv~maQ~f~gsnn~~ll~~~G~fGsr~~~g~~~AA~RYietrLs~~~~~lf~~~D~~~l~~~~~dg~~iEP~~y 400 (760)
T d1bjta_ 321 QSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWY 400 (760)
T ss_dssp CCHHHHHHHHHCCSTTSCSSCSEEEESCCCCTTTTSTTCCCGGGCEEEECTTHHHHSCGGGGGGSCEEEETTEEEEESCC
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEECCCCC
T ss_conf 51367899997454304536534046886666789985267889986477888877302566610035688860475410
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~piiP~lLvNGs~GIatG~aT~IPphNp~eVi~~i~~~i~~~~~~~~~P~~~Gf~G~i~~~~~g~~~~~g~~e~~~~~~I 480 (760)
T d1bjta_ 401 LPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVL 480 (760)
T ss_dssp CCSSCHHHHTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCCCCCCBCCTTCCSEEEEEETTEEEEECEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEE
T ss_conf 46789999755101236552056764578899999998387033214887455542100234332699999864278749
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~ITELP~gvwt~~~~E~i~~ll~~~~K~~~~i~d~~d~s~~~Vr~vI~lk~~~~~~~~~~~l~k~~kL~~s~s~~Nm~l~ 560 (760)
T d1bjta_ 481 EITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAF 560 (760)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHSCCTTSCCCCCEEEECCSSSCCEEEECCHHHHHHHHHHCHHHHTTCEEEEECTTEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 99814411002469999999874023467631000025666531699843420000011135553100102212015687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 d~~g~i~k~~sl~eIL~~f~~~Rle~y~kRk~~~l~~l~~el~~l~~k~rFI~~vi~~~I~I~~~~kdeIi~~L~~~~~~ 640 (760)
T d1bjta_ 561 DPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFP 640 (760)
T ss_dssp CTTSCEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCTTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCC
T ss_conf 68886311123999999999999999866899999999999999885999998754102430058789999999967994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~~~~~~ydYLL~MrL~~LT~eei~kL~~E~~~ 720 (760)
T d1bjta_ 641 RFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQE 720 (760)
T ss_dssp EECTTCCEECSCC-----------------------------------CTTTCBSHHHHTSCGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 24455543202303566766543100111110000012345554201001356788998586888779999999999999
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------9
Q 000235 1717 ---------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------~ 1717 (1815)
.
T Consensus 721 l~~Ei~~L~~~t~~~lW~~DL~~l~~~y~k~~~~~~e~R~ 760 (760)
T d1bjta_ 721 KETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARG 760 (760)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999977899999999999999999999997654349
|
| >d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PFL-like glycyl radical enzymes superfamily: PFL-like glycyl radical enzymes family: PFL-like domain: Pyruvate formate-lyase, PFL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=57804.37 Aligned_cols=1 Identities=0% Similarity=-0.094 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (759)
T d1h16a_ 1 SELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVAST 80 (759)
T ss_dssp CCCCHHHHHHTTTCCCSGGGTSCCHHHHHHHHCCCCCSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHTSCSEEEEEEECC
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 90578899883468888786657489999966978879611113967889999999999999999868916720888876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~yi~~~~e~ivg~qt~~p~~~~~~p~gg~~~~~~~~~~~g~~~d~~~~~~~~~~~kt~~~~vf~~~~~e~~~~r 160 (759)
T d1h16a_ 81 ITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCR 160 (759)
T ss_dssp SSSSCCCCSCTTTCSSCCCSSSSTTEEEECGGGCSHHHHHHHHHTTCCCCHHHHHHHHHTSCCHHHHHHHHCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
T ss_conf 13479985068777775017896223257866089999999998188888558888687522352034121799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~i~tgl~d~yG~G~ii~DY~rv~~~Gid~li~ek~~~~~~~~~~~~~~~~~e~~ir~~eeiaeq~~~l~~l~~ma~~~ 240 (759)
T d1h16a_ 161 KSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKY 240 (759)
T ss_dssp HHTSSCSCTTSSBCCCCCCCTHHHHHHCHHHHHHHHHHHHHTTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCEEECCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76945438742688887067599998607999999999887420444304013999999999999999899999999983
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~PA~tf~EAlQ~~wf~~la~~~E~ng~a~S~GR~DqyL~PyyerDl~~G~lTeeeA~ELi~~f~iKl~~v~~~rt 320 (759)
T d1h16a_ 241 GYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRT 320 (759)
T ss_dssp TCCCSSCCCSHHHHHHHHHHHHHHHHHHCCBSCCCCBSCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95867887669999999999999999862543357763257789999979876998999999999999998438342337
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~fsG~~~~~~~~IGG~~~dG~d~vn~lS~~~Lea~~~l~~~~ePnLtvr~~~~~Pe~f~~~a~~v~~g~~~p~~~ 400 (759)
T d1h16a_ 321 PEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYE 400 (759)
T ss_dssp HHHHHHSCSSCCCCEEEEECBCTTSCBCCCHHHHHHHHHHHHSCCCSCSEEEEEECTTSCHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHEEECCCCEEEEE
T ss_conf 66544245777531488606379888556688999999999837888996699988889999998656572489714686
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 NDd~~~p~~da~dY~i~gCve~~~~Gk~~~~~~a~~NlaK~LE~aLN~G~D~~~g~q~gp~~~~~~~~~~~feev~e~~~ 480 (759)
T d1h16a_ 401 NDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMD 480 (759)
T ss_dssp EHHHHHHHHTCSCEEEETTTEEEETTTEEEEEEEEEEHHHHHHHHHTTTBCTTTCCBCSCCCCCCCSSSCCHHHHHHHHH
T ss_pred CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 55102143234892103233578689647436556359999999985693744465556766887443127999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~l~~~~~~~v~~~n~i~~~h~~~~~~~~~sal~d~~v~r~~~~g~aGls~vaDSLaAIK~~~~k~~~de~~~al~~~~e 560 (759)
T d1h16a_ 481 HFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIE 560 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHTTSCSSCEEEEEEEEECHHHHHHHHHHHHHSEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999887799999873186438771017402068632046399999999999987679689999998875500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 g~~PKyGNDDd~vD~ia~~i~~~~~~~i~~~~~~rg~~~~~~~ltitsnV~~G~~tGATPDGR~AG~Pla~G~sP~~G~D 640 (759)
T d1h16a_ 561 GEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRD 640 (759)
T ss_dssp SCCCCTTSCCHHHHHHHHHHHHHHHHHHHTSCCGGGCEEEEEECCTTHHHHHHHTCCCCTTSCCTTCCCCSTTCCSTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77999989980688999999999999996457889983005565501036422632559896738797899999888977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~GptA~l~SvaKl~~~~~~~G~~~n~k~~P~~l~~~~~~~~~nL~~ll~tYf~~~~~~~GG~HiqfNVvd~etL~dAqk 720 (759)
T d1h16a_ 641 QKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAME 720 (759)
T ss_dssp CSCHHHHHHHHHTSCGGGCTTEECCEEEECHHHHCSSHHHHHHHHHHHHHHHHCCBTTBCCCCEEEEEECCHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHCCCCEEEEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 73789999877638832257876764444576617971167899999999985546557866769997288999999995
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000235 1717 --------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------~ 1717 (1815)
-
T Consensus 721 ~PEkY~dLiVRVaGYSa~Fv~L~~e~QdeII~RT~he~~ 759 (759)
T d1h16a_ 721 NPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM 759 (759)
T ss_dssp CGGGCTTCEEECSSSEEEGGGSCHHHHHHHHTSCCBCCC
T ss_pred CHHHCCCEEEEECEEEHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf 965379818995818565410999999999998541459
|
| >d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Photosystem I subunits PsaA/PsaB superfamily: Photosystem I subunits PsaA/PsaB family: Photosystem I subunits PsaA/PsaB domain: Apoprotein a1, PsaA species: Synechococcus elongatus [TaxId: 32046]
Probab=100.00 E-value=0 Score=56583.45 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~v~~~~~~~~~~~w~kpghFs~~Lak~P~TTtwIW~lhA~AHDFesh~~~~e~l~~KiFssHfghLaiIflW~sG~~F 80 (743)
T d1jb0a_ 1 RVVVDNDPVPTSFEKWAKPGHFDRTLARGPQTTTWIWNLHALAHDFDTHTSDLEDISRKIFSAHFGHLAVVFIWLSGMYF 80 (743)
T ss_dssp CCCEEESCSCCCTTTTTSTTTTCGGGTTCCSBTHHHHHHHHTTTCGGGTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_conf 91016788877866715888645655349986423220026622322467719999999998632589999999701401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 HgA~fsNye~Wl~DP~hv~P~Ah~VWP~~GQ~~lna~~gg~~~gv~itSGlfq~W~a~Gi~t~~qLy~~ai~~lila~l~ 160 (743)
T d1jb0a_ 81 HGAKFSNYEAWLADPTGIKPSAQVVWPIVGQGILNGDVGGGFHGIQITSGLFQLWRASGITNEFQLYCTAIGGLVMAGLM 160 (743)
T ss_dssp HHHHSCCHHHHHHCTTTSCCEECCCCCCTTGGGGSEEEETTEEEEECCSCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHCCCCCCCCCCEECCCCCHHHHHCCCCCCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 11010449998518555685521426534657764123478767423201688899817763999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 L~aGw~H~hk~~P~l~wfkn~eS~lnHHL~gL~Gl~SlaWaGHliHVaiP~~r~~~~g~~~~~~~~Ph~~~l~~~~~~~l 240 (743)
T d1jb0a_ 161 LFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSLAWAGHQIHVSLPINKLLDAGVAAKDIPLPHEFILNPSLMAEL 240 (743)
T ss_dssp HHHHHHHHHTEEECHHHHTCHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHHHHTTTCCSTTSCCTTHHHHCHHHHHHS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHEEECCHHHCCCCCCCCCCCCCCCHHHCCHHHHHCC
T ss_conf 99998763313538899973455543257788703166530302013130430677773764479987475597876233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 yp~~~~~~~~gl~pfft~nw~~ys~~LTF~GGl~P~TgsLwLTDiAHHHlAIaVlFIiAGHmYrtn~GIGHsikeIl~~h 320 (743)
T d1jb0a_ 241 YPKVDWGFFSGVIPFFTFNWAAYSDFLTFNGGLNPVTGGLWLSDTAHHHLAIAVLFIIAGHMYRTNWGIGHSLKEILEAH 320 (743)
T ss_dssp STTSCCCSCC---CTTTTCGGGGTTTSCCCCSCCTTTSSCCHHHHHHHHHHHHHHHHHHTTCBCCSSSCSBCHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
T ss_conf 74432122356555404636653233203677787767617888888899999999987453100445441389998613
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~p~~g~gh~Gly~~~~~S~H~QL~lnLA~lGs~silVAqHmYamPpYpyla~Dy~Tq~sLftHH~wIggflivGAfAH~ 400 (743)
T d1jb0a_ 321 KGPFTGAGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAQHMYAMPPYPYLATDYPTQLSLFTHHMWIGGFLVVGGAAHG 400 (743)
T ss_dssp CCSSSTTTTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 68888876426999877566677788887602158999887504887510111002467766678777666630210011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 aIF~VRDYdp~~n~~nvL~RvL~hrdaIISHLsWV~lfLGfHs~GLYiHNDtm~AfGrPed~FsD~aI~lePVFAQwIQ~ 480 (743)
T d1jb0a_ 401 AIFMVRDYDPAMNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYVHNDTMRAFGRPQDMFSDTGIQLQPVFAQWVQN 480 (743)
T ss_dssp HHHHHHTCCGGGGSSSHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGSBSTTSBCCCCHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCHHHHCCCCCEEECHHHHHHHHH
T ss_conf 15664125721242309999987688898878899987520101113323067641882552476532413599999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~s~~~~g~~~~v~~~~~~~~i~lG~~DFlVHH~iA~~iH~T~LIL~KG~L~ARgSkL~PDK~~~ 560 (743)
T d1jb0a_ 481 LHTLAPGGTAPNAAATASVAFGGDVVAVGGKVAMMPIVLGTADFMVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANL 560 (743)
T ss_dssp HHHHTBTTTBTTCSSCSCTTSSSCCEEETTEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCTTHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHC
T ss_conf 65532377785422443301487748877800224435571578888887642120010110000111234336731203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 Gf~fpCDGPGRGGTC~iSaWD~~yL~~FWm~Ntis~v~F~f~WK~~s~~~g~~~~~g~v~~~~~g~F~~ss~~i~GWlRd 640 (743)
T d1jb0a_ 561 GFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSWKMQSDVWGTVAPDGTVSHITGGNFAQSAITINGWLRD 640 (743)
T ss_dssp CSSCCCSCSCTTCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECTTCCEEETTTTCHHHHTTSHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHH
T ss_conf 87677788888875656247889999999852341489986130233210211356633430454312353145567999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 yLW~~ssqvi~~Y~~~Ls~~~~~FL~aH~vWA~~fMFL~S~RGYWQELIEsivwaH~k~~~a~~i~P~ALSI~Q~R~VGl 720 (743)
T d1jb0a_ 641 FLWAQASQVIGSYGSALSAYGLLFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIIQGRAVGV 720 (743)
T ss_dssp THHHHTHHHHHCTTSTTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCCSSBCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH
T ss_conf 99985899986148610799999999999999989987517626999999999985027665556531423214467889
Q ss_pred ----------------------C
Q ss_conf ----------------------9
Q 000235 1717 ----------------------A 1717 (1815)
Q Consensus 1717 ----------------------~ 1717 (1815)
.
T Consensus 721 ~Hf~~G~I~t~~aF~iar~~~~g 743 (743)
T d1jb0a_ 721 AHYLLGGIATTWAFFLARIISVG 743 (743)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99988589999999999985269
|
| >d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Monomeric isocitrate dehydrogenase domain: Monomeric isocitrate dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=100.00 E-value=0 Score=56362.05 Aligned_cols=1 Identities=100% Similarity=0.936 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~p~IiyT~tDEAPaLAT~SlLPIi~aF~~~agi~ve~~DISLAgRIla~Fpe~L~~~Q~~~D~La~LGel~~~p~ANII 80 (740)
T d1itwa_ 1 STPKIIYTLTDEAPALATYSLLPIIKAFTGSSGIAVETRDISLAGRLIATFPEYLTDTQKISDDLAELGKLATTPDANII 80 (740)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHCGGGSCTTTCCCCHHHHHHHHTTSTTCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHCCCCCCEE
T ss_conf 99706895276268777776789999963140874762005599999983644277642587089998887379887766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 KLPNISASiPQL~aaI~ELQ~kGy~lPdYPe~p~tdeEk~ikarY~kv~GSAVNPVLREGNSDRRap~aVK~yAkknPHs 160 (740)
T d1itwa_ 81 KLPNISASVPQLKAAIKELQQQGYKLPDYPEEPKTDTEKDVKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHK 160 (740)
T ss_dssp ECCCCCBCHHHHHHHHHHHHHTTCCCCCCCSSCCSHHHHHHHHHHHHHSBSCSHHHHCCBCEEEECCHHHHHHHHHSCCC
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 57866556699999999999669999999999998689999999977403445822104776432368999999859775
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 MG~Ws~dSkthVa~M~~GDF~~nEkS~t~~~a~~~~Ief~~~~G~~tvLK~~l~l~~GEVIDAt~MS~kaL~~Fl~eqI~ 240 (740)
T d1itwa_ 161 MGAWSADSKSHVAHMDNGDFYGSEKAALIGAPGSVKIELIAKDGSSTVLKAKTSVQAGEIIDSSVMSKNALRNFIAAEIE 240 (740)
T ss_dssp CCCCCTTCCCEEECCSSSSHHHHCEEEECCSSEEEEEEEEETTSCEEEEEEEEEECTTCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHH
T ss_conf 78998877724775368997677445763588548999985899789852335467784776455309999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 dAK~~gVLfSLHLKATMMKVSDPIIFGHaVkvffkdvFeKh~~~l~~lGvn~nnGlgdl~~ki~~Lp~~~r~eI~adi~~ 320 (740)
T d1itwa_ 241 DAKKQGVLLSVHLKATMMKVSDPIMFGQIVSEFYKDALTKHAEVLKQIGFDVNNGIGDLYARIKTLPEAKQKEIEADIQA 320 (740)
T ss_dssp HHHHHTCEEEECBCTTTSTTHHHHHHHHHHHHHTHHHHHHTHHHHHHTTCCGGGCHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 66305702210333331136762588999999999999998999997398856688999999871575279999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~P~lAMVdSdkGITNLHVPSDVIIDASMPAmIR~~GkmW~~dg~~~DtkavIPD~sYA~vY~~~I~~ck~~GafDP 400 (740)
T d1itwa_ 321 VYAQRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGPDGKLHDTKAVIPDRCYAGVYQVVIEDCKQHGAFDP 400 (740)
T ss_dssp HHHHSCCBCEEETTTTEETTTCTTTSBHHHHHHHHHHTTTEEECTTSSEEEEEEECCSHHHHHHHHHHHHHHHHHCSCCT
T ss_pred HHHHCCHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98839314213345575446788643664662698745222238999921034743663037899999999997299995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~tmGsV~NVGLMAqKAEEYGSHdkTFe~~~~G~v~vv~~~G~vl~eh~Ve~GDIwR~cq~kd~~I~dWvkLav~ra~~t~ 480 (740)
T d1itwa_ 401 TTMGSVPNVGLMAQKAEEYGSHDKTFQIPADGVVRVTDESGKLLLEQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATN 480 (740)
T ss_dssp TTCCCCCEEECCTTTCGGGGCGGGEEECSSSEEEEEEETTCCEEEEEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHC
T ss_conf 10201441364326805308789871058980899994798699999970697577404751579999999999999729
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~pavFWLd~~RaHD~~lI~kV~~yL~~~dt~gldi~Im~p~~A~~~sl~r~~~G~dtIsvTGNVLRDYlTDLFPILElGT 560 (740)
T d1itwa_ 481 TPAVFWLDPARAHDAQVIAKVERYLKDYDTSGLDIRILSPVEATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGT 560 (740)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHHHTTSCCTTCCEEEECHHHHHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCHHCCCH
T ss_conf 97489866766548999999999863438998873530599999999998726997477544038877742020312330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 SAKMLSIVpLm~GGgLFETGAGGSAPKhvqQ~~~E~hLrWDSLGEflAla~sLe~la~~~~n~ka~vla~~Ld~At~~~L 640 (740)
T d1itwa_ 561 SAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKIL 640 (740)
T ss_dssp SSSSEEEEEBTTSCEEEESCSSCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 35455403552697346338998616899999862851035088899999999999863499288999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~ksPsrkvge~DnRgSHfylalyWA~ala~q~~d~~l~~~F~~~a~~l~~ne~~I~~el~~~qG~~~digGYy~pd~~ 720 (740)
T d1itwa_ 641 DNNKSPARKVGEIDNRGSHFYLALYWAQALAAQTEDKELQAQFTGIAKALTDNETKIVGELAAAQGKPVDIAGYYHPNTD 720 (740)
T ss_dssp HTTCSCCSSSSSCCHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSSCCCCSCSSSCCHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 56999876679987872169999999999984687899999999999999975999999999636986467877579989
Q ss_pred -------------------C
Q ss_conf -------------------9
Q 000235 1717 -------------------A 1717 (1815)
Q Consensus 1717 -------------------~ 1717 (1815)
.
T Consensus 721 k~~~~MrPS~t~N~ii~~~a 740 (740)
T d1itwa_ 721 LTSKAMRPSATFNAALAPLA 740 (740)
T ss_dssp HHHHHHCCCHHHHHHTTTCC
T ss_pred HHHHHCCCHHHHHHHHHHHC
T ss_conf 99876096589999998509
|
| >d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Photosystem I subunits PsaA/PsaB superfamily: Photosystem I subunits PsaA/PsaB family: Photosystem I subunits PsaA/PsaB domain: Apoprotein a2, PsaB species: Synechococcus elongatus [TaxId: 32046]
Probab=100.00 E-value=0 Score=56273.11 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 at~fp~fs~~la~~PTTt~iW~~~a~aHDFesh~~~~ee~l~rKIFssHFGhLaiIflWlSG~~FHgA~fsNye~Wl~dP 80 (739)
T d1jb0b_ 1 ATKFPKFSQDLAQDPTTRRIWYAIAMAHDFESHDGMTEENLYQKIFASHFGHLAIIFLWVSGSLFHVAWQGNFEQWVQDP 80 (739)
T ss_dssp CBSCSTTCHHHHTCCBTHHHHHHHHHTTCGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHCT
T ss_pred CCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCC
T ss_conf 98766433444269952245444066223224578427889999998742478999999711200000002399885186
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~v~P~A~~VWdP~~GQ~~lna~~~gG~~~~v~It~SG~fq~W~a~Gi~t~~~Ly~~ai~~lila~l~L~aGw~H~h~k~ 160 (739)
T d1jb0b_ 81 VNTRPIAHAIWDPQFGKAAVDAFTQAGASNPVDIAYSGVYHWWYTIGMRTNGDLYQGAIFLLILASLALFAGWLHLQPKF 160 (739)
T ss_dssp TTCCCEEEECCCTTCCHHHHHHHSCTTCSSCEEECCSCHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTSGGG
T ss_pred CCCCCCCCEECCCCCCHHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 66787650541664560765300456776772564512747788717653899999999999999999997776444101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 aP~l~wfkn~eS~lnHHL~gL~Gl~SlaWaGHliHVaiP~~~~~~~g~d~~~~~~P~p~gL~pff~~nw~~y~~~~~~~~ 240 (739)
T d1jb0b_ 161 RPSLSWFKNAESRLNHHLAGLFGVSSLAWAGHLIHVAIPESRGQHVGWDNFLSTMPHPAGLAPFFTGNWGVYAQNPDTAS 240 (739)
T ss_dssp CCCHHHHTCHHHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHTTCCCCTTTGGGSCSSTTCSHHHHTTCGGGGGSSCCCTT
T ss_pred CCHHHHHHCHHHHHHHHHHHHHHCCHHHHCCEEEEEEHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 52658875617777777889871024432353678741133377766486326899946669054311765578854444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~f~~~~ga~s~~LTF~GGl~P~TgsLwLtDiAHHHlAiaVlFIiaGHmYrTn~GiGHsikeIl~~h~~~~~~~~g~~~~ 320 (739)
T d1jb0b_ 241 HVFGTAQGAGTAILTFLGGFHPQTESLWLTDMAHHHLAIAVLFIVAGHMYRTQFGIGHSIKEMMDAKDFFGTKVEGPFNM 320 (739)
T ss_dssp CCTTSSTTCCCCSSCCCCSCCTTTCSCCHHHHHHHHHHHHHHHHHHTTSBCCTTSCSBCHHHHHHCCCBTTBCCSSGGGC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 11003300111000124787887676316878889999999999873554213354411899987513688877777777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 gh~Gly~~l~~S~H~QL~lnLA~lGs~silVAqHmYamPpYpyla~DY~Tq~sLftHH~wIggflivGAfAHaaIF~VRD 400 (739)
T d1jb0b_ 321 PHQGIYETYNNSLHFQLGWHLACLGVITSLVAQHMYSLPPYAFIAQDHTTMAALYTHHQYIAGFLMVGAFAHGAIFLVRD 400 (739)
T ss_dssp CCTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 76304553122089999999987123599999885038886200000103576556777776666302000012677621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 Ydp~~n~~NvL~RvL~hrdaIISHLsWV~lfLGfHsfGLYIHNDtm~AfGrPe~~I~lePVFAQwIQ~~~~~~~y~~~~l 480 (739)
T d1jb0b_ 401 YDPAQNKGNVLDRVLQHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPVFAQFIQAAHGKLLYGFDTL 480 (739)
T ss_dssp CCSGGGTTSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGSCCBCCHHHHHHHHHTTCGGGCCCCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 57200223299999876889999899999875200011255441777518943111003499999998654223565422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~s~a~~a~~~~~~~~~~g~l~ai~~~~~~~~l~lG~aDFlVHH~~A~~iHvT~LIL~KG~L~AR~SrL~PDK~~~G 560 (739)
T d1jb0b_ 481 LSNPDSIASTAWPNYGNVWLPGWLDAINSGTNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFG 560 (739)
T ss_dssp TSSTTSHHHHTTTTCCCCSHHHHHHHHHSSSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCTTGGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCC
T ss_conf 46788655421245675214764476257755344567705788988988643578898875434303564566233158
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 f~FpCDGPGRGGTC~iSaWD~~~L~~FWm~N~is~v~F~f~WK~~~~w~g~~~~F~~ss~~i~GWlRdyLW~~ssqvi~~ 640 (739)
T d1jb0b_ 561 YAFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHLGVWEGNVAQFNESSTYLMGWLRDYLWLNSSQLING 640 (739)
T ss_dssp SCCSCSCSGGGCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTSHHHHHHHTHHHHTTTGGGS
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECEEHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHC
T ss_conf 65677788878755560788899999997130208999996410120132455554045021036999999867999743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 Y~~~g~~~Ls~~~~~FL~aH~vWA~~fMFL~S~RGYWQELIEsivwaH~k~~~a~~i~~~~~P~ALSI~QgR~VGl~Hf~ 720 (739)
T d1jb0b_ 641 YNPFGTNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFS 720 (739)
T ss_dssp EETTEECTTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSTTGGGCCCSSBCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHH
T ss_conf 68556560469999999879999999999861552799999999997502675434422678614351022456789998
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000235 1717 ------------------A 1717 (1815)
Q Consensus 1717 ------------------~ 1717 (1815)
-
T Consensus 721 ~G~I~t~~aF~ia~t~~~~ 739 (739)
T d1jb0b_ 721 VGYILTYAAFLIASTAAKF 739 (739)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 8589999999999863169
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=100.00 E-value=0 Score=55572.26 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~np~~l~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~~iYT~~G~iLiaiNP~~~~~~y~~~~~~~y~~~~~~~~~PHif~v 80 (730)
T d1w7ja2 1 RNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAV 80 (730)
T ss_dssp CCCGGGTTCSSSTTCSCCSHHHHHHHHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHH
T ss_pred CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 99521158534322898998999999999866179605648888999789988899998999997089868899839999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 A~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l~~~s~~~~~~~~~~~i~~~n~ileaFGnAkT~~N~NSSRfgk 160 (730)
T d1w7ja2 81 AEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGK 160 (730)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEE
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 99999999970898079997179998799999999999997289865439999998879999852666578998665004
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~l~f~~~g~i~ga~i~~ylLEksRv~~~~~~ErnfHIFY~ll~g~~~~~~~~l~l~~~~~~~yl~~~~~~~~~~~~d~ 240 (730)
T d1w7ja2 161 YIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDA 240 (730)
T ss_dssp EEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHH
T ss_pred EEEEEECCCCCEEEEEEEECCCCCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCCEECCCCHH
T ss_conf 33555437897799999974555650342168887630099987589889999818998465235316897200785639
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~f~~~~~al~~lG~~~ee~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (730)
T d1w7ja2 241 KEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLAT 320 (730)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEEC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECEEEEEECCCCCEEECCCHHHHHHHHHHHCCCHHHHHHHHHEEEEEE
T ss_conf 99999999998769999999999999999865221689863886414317879999999861999899887663225761
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiv~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINy~NEkLq 400 (730)
T d1w7ja2 321 ATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQ 400 (730)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 15345333108999999999999999999999999987540675311112410103687666745499998764089999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~f~~~~F~~e~~~y~~EgI~~~~i~~~dN~~~l~Li~~~~gil~lLdee~~~~~~td~~~l~kl~~~~~~~~~~~~~~~ 480 (730)
T d1w7ja2 401 QQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPR 480 (730)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHSTTSHHHHHHHHHTSTTCCHHHHHHHHHHHHTTTCTTEECCT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99998878999999985588776667578704776660455578776775268887668899999997457875567898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~Ssn~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (730)
T d1w7ja2 481 LSNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAK 560 (730)
T ss_dssp TCSSEEEEECSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSSCSHHHHTTC----------------------------
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88885599974886105200008753310459999999967872899998512000234433454445543345555444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~tv~~~fr~sL~~L~~~L~~t~~hFIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~vrir~~Gyp~R~ 640 (730)
T d1w7ja2 561 ARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRW 640 (730)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCC
T ss_conf 56665445667739999999999999998377985789879887668777687999999987467999999965898605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~f~eF~~RY~~L~~~~~~~~~~k~~~~~lL~~l~~~~~~~~iGkTkVFlr~~~~~~LE~~r~~~l~~~~~~iQ~~~R~~l 720 (730)
T d1w7ja2 641 TYQEFFSRYRVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWL 720 (730)
T ss_dssp EHHHHHHHHGGGSCGGGCCSCHHHHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 39999999998777777888878999999997699945588359879980489999999999999999999999999999
Q ss_pred ---------C
Q ss_conf ---------9
Q 000235 1717 ---------A 1717 (1815)
Q Consensus 1717 ---------~ 1717 (1815)
+
T Consensus 721 ~Rk~~~r~r~ 730 (730)
T d1w7ja2 721 MRKKYMRMRR 730 (730)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHCC
T ss_conf 9999998619
|
| >d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prismane protein-like superfamily: Prismane protein-like family: Acetyl-CoA synthase domain: Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit species: Moorella thermoacetica [TaxId: 1525]
Probab=100.00 E-value=0 Score=55507.45 Aligned_cols=1 Identities=0% Similarity=-1.026 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~d~~~~~ai~~gk~~~~l~~~~~~G~~~~~~~ae~~l~~ai~~~g~d~~V~fP~TaY~LPviy~~tG~kv~tL~dl~ 80 (729)
T d1oaoc_ 1 MTDFDKIFEGAIPEGKEPVALFREVYHGAITATSYAEILLNQAIRTYGPDHPVGYPDTAYYLPVIRCFSGEEVKKLGDLP 80 (729)
T ss_dssp CCTGGGGGTTCSCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCTTCSSSSHHHHHHTCCCCCBGGGHH
T ss_pred CCCHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEHHHHH
T ss_conf 96567654301247887079999997156889999999999999984899844699861023024651472331266579
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~l~~~~~~~~~~~~l~~al~aG~at~~aaE~iEalky~~~~p~e~~~~~p~~G~~~D~iiR~~Gv~lVdG~iPG~Avi~ 160 (729)
T d1oaoc_ 81 PILNRKRAQVSPVLNFENARLAGEATWYAAEIIEALRYLKYKPDEPLLPPPWTGFIGDPVVRRFGIKMVDWTIPGEAIIL 160 (729)
T ss_dssp HHHHHHHHHCCSSCSHHHHHHHHHHHHHHHHHHHHHHGGGCBTTBCSSCTTCCSSCCHHHHHHTHHHHTTTSSCCEEEEE
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEE
T ss_conf 99999986466665543367778899999999999997407876777778730666628899729752058877069995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 G~ap~~e~a~~iv~elq~k~l~~fl~g~iieql~e~gvk~G~d~r~vP~G~~ts~iha~~~A~Raal~FGgv~pGd~~~~ 240 (729)
T d1oaoc_ 161 GRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEENVKLGIDYIAYPLGNFTQIVHAANYALRAGMMFGGVTPGAREEQ 240 (729)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHTTCCCBGGGTEEEEESGGGGHHHHHHHHHHHHTTTCCCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEECCCEEEEECCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 58998689999999998668679870029999997193425616887347503674312588876566279883326789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~Y~~~Rv~AFV~alg~~dd~~~A~~aGai~~GfPvItd~~ipe~~~~p~~~~~~~~~d~iv~~alE~RgiKv~i~~i~i 320 (729)
T d1oaoc_ 241 RDYQRRRIRAFVLYLGEHDMVKTAAAFGAIFTGFPVITDQPLPEDKQIPDWFFSVEDYDKIVQIAMETRGIKLTKIKLDL 320 (729)
T ss_dssp HHHHHHHCCEEEEEESSCCHHHHHHHHHHHHHTCCEEESSCCCGGGCBTTTEEECCCHHHHHHHHHHHHTCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99999888999987178446674410455531875633687864333566122566688999877875383689973577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Pv~~~pafEGErIRk~dm~vE~GG~k~~~~ELV~~~~~~eIEDgkI~viGPdi~~meeG~~~Plgi~v~VaG~~mq~D~E 400 (729)
T d1oaoc_ 321 PINFGPAFEGESIRKGDMYVEMGGNRTPAFELVRTVSESEITDGKIEVIGPDIDQIPEGSKLPLGILVDIYGRKMQADFE 400 (729)
T ss_dssp SSCBSGGGGGCCCCGGGEEEEEETTTSCEEEEEEECCGGGCCTTCEEEESCCGGGSCTTEECCEEEEEEEECTTCCGGGH
T ss_pred CCCCCCCCCCCEECCCCEEEECCCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHCCCCCCCCEEEEEEECCHHCCHHHH
T ss_conf 60025444653542477589908987652799996373514456489968874534767766539999832800041478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 pVlERriH~~~Ny~eG~mH~~QRd~~WiRISK~a~~kGf~l~hiG~vl~~~~k~efp~ivdk~qVti~Td~~~V~~~~~~ 480 (729)
T d1oaoc_ 401 GVLERRIHDFINYGEGLWHTGQRNINWLRVSKDAVAKGFRFKNYGEILVAKMKEEFPAIVDRVQVTIFTDEAKVKEYMEV 480 (729)
T ss_dssp HHHHHHHHHHHHTBTTEEEEEETTEEEEEEEHHHHHHTCCTHHHHHHHHHHHHHHSBTTBSEEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCEEEEECCCCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHH
T ss_conf 89999999998750516983477628999617898669857779999999998776756556899998499999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 A~~~Y~~RD~R~~~ltDE~VD~FYsC~LCQSFAPsHVCvVtPeR~gLCGAisWlD~kAa~eidP~Gp~qpI~Kge~lD~~ 560 (729)
T d1oaoc_ 481 AREKYKERDDRMRGLTDETVDTFYSCVLCQSFAPNHVCIVTPERVGLCGAVSWLDAKASYEINHAGPNQPIPKEGEIDPI 560 (729)
T ss_dssp HHHHHHHHHHHHHTCCTTTCSEEEEECGGGGTSTTCCEEEBTTBCCTTSCCCHHHHHHHHHHCTTSSCCEEECCSEEETT
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCCEEEEECCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999877787622873676204410545214887148968986655450141030545304998988446666643655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~Gey~gVNe~v~k~S~g~~e~v~lyS~~~~PmTSCGCFE~I~~~iPe~nGi~iV~Rey~G~TP~Gm~FstlAg~~gGG~Q 640 (729)
T d1oaoc_ 561 KGIWKSVNDYLYTASNRNLEQVCLYTLMENPMTSCGCFEAIMAILPECNGIMITTRDHAGMTPSGMTFSTLAGMIGGGTQ 640 (729)
T ss_dssp TTEEHHHHHHHHHHTTTSCCCCCTTCSSSSCCCCCSCCSEEEEEEGGGTEEEEEETTCCSCCTTSCCHHHHHHHHCTTCC
T ss_pred CCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 57240588999985278568999998427887674126656210214755799826768889888725776535589744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~pGF~Gi~~~y~~S~KFl~adGG~~RiVWMPk~LKe~~~~~l~~r~~~~~ip~d~~DkIAdE~~~~~~eel~~FL~e~~H 720 (729)
T d1oaoc_ 641 TPGFMGIGRTYIVSKKFISADGGIARIVWMPKSLKDFLHDEFVRRSVEEGLGEDFIDKIADETIGTTVDEILPYLEEKGH 720 (729)
T ss_dssp CTTEEEECGGGGGSTTTTGGGTGGGGEEECCHHHHHHHHHHHHHHHHHTTSCTTHHHHSBCTTTCSSHHHHHHHHHHHTC
T ss_pred CCCCEEEEHHHCCCCCCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 77730300533167311324788256787809999998888776677633877777541575456898999999975699
Q ss_pred --------C
Q ss_conf --------9
Q 000235 1717 --------A 1717 (1815)
Q Consensus 1717 --------~ 1717 (1815)
-
T Consensus 721 Pal~mdp~m 729 (729)
T d1oaoc_ 721 PALTMDPIM 729 (729)
T ss_dssp GGGGSCCCC
T ss_pred CEEECCCCC
T ss_conf 664226789
|
| >d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Transhydroxylase alpha subunit, AthL species: Pelobacter acidigallici [TaxId: 35816]
Probab=100.00 E-value=0 Score=55399.25 Aligned_cols=1 Identities=0% Similarity=-0.760 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~gc~~~v~V~dG~vv~i~~~~~~~~~~~~~~~~~~rG~~~~p~~~G~~C~kG~~~~~~~y~pdRl~~Pl 80 (728)
T d1vlfm2 1 MGEVVRLTNSSTGGPVFVYVKDGKIIRMTPMDFDDAVDAPSWKIEARGKTFTPPRKTSIAPYTAGFKSMIYSDLRIPYPM 80 (728)
T ss_dssp CCCCEEEEECCTTCCEEEEEETTEEEEEECCBCCTTTSCCCCCEEETTEEECCCSBCCCCHHHHTTHHHHTCTTBCCSCE
T ss_pred CCCEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 99628862148888279999999999998247787656554332246887798766753753430177646944324881
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 kR~g~~~~g~~~~~~RG~g~~~~~~~~~w~~ISWdEAld~Ia~kl~~i~~~yGp~si~~~~~~~~~~g~~~~~~~~~~rf 160 (728)
T d1vlfm2 81 KRKSFDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRF 160 (728)
T ss_dssp EETTCCTTSCCCGGGTTHHHHTTCGGGGEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEECCSCCCSCTTTSTTTHHHHH
T ss_pred EEEECCCCCCCCHHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 86106666665611125565465778958982699999999999999999759864998357543334166899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~d~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~ 240 (728)
T d1vlfm2 161 MNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPEQYDLLEDGLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKD 240 (728)
T ss_dssp HHHHCCEEEECCCTTTHHHHHTHHHHHCCGGGTTCCCCTTHHHHHHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHH
T ss_pred HHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEECCCCCHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99728720469986213444200144323544078876686165541340565304671313564302678888888871
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~GaKlVvVDPr~t~ta~~~AD~wipirPGTD~AL~lam~~~Ii~~~l~D~~fl~~~t~g~~~~~~~l~~~~~~~~~tpE~ 320 (728)
T d1vlfm2 241 LGVDFVFIDPHMNHTARLVADKWFSPKIGTDHALSFAIAYTWLKEDSYDKEYVAANAHGFEEWADYVLGKTDGTPKTCEW 320 (728)
T ss_dssp TTCEEEEECSBCCHHHHHHCSEEECCCTTCHHHHHHHHHHHHHHHTCSCHHHHHHHEESHHHHHHHHTTTTTSCCCCHHH
T ss_pred CCCEEEEECCCCCCCHHHHHCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 79749998888775344431131256643207999999999998788433211000204899999985033324457555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~itGV~~~~I~~~A~~~a~~~~~~~~~g~~~~~~~~~~~~g~~~~rai~~L~~l~G~~~~ggg~~~~~~~~~~~~~~~ 400 (728)
T d1vlfm2 321 AEEESGVPACEIRALARQWAKKNTYLAAGGLGGWGGACRASHGIEWARGMIALATMQGMGKPGSNMWSTTQGVPLDYEFY 400 (728)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHSCEEEEETTTTSCCGGGSBTTHHHHHHHHHHHHHHTTTTSTTCEECCSSSCCCCCTTSC
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32205988999999999986479679996144454321023367889999999886087768863334677766555556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (728)
T d1vlfm2 401 FPGYAEGGISGDCENSAAGFKFAWRMFDGKTTFPSPSNLNTSAGQHIPRLKIPECIMGGKFQWSGKGFAGGDISHQLHQY 480 (728)
T ss_dssp CCCGGGCTTSCCTTTSGGGTTHHHHHCCSSSCCCCCCSSSSTTSCEEEGGGHHHHHHHSCEEEECCSSCCSSTTGGGCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 64312368766556555554321012456445676001474244305400136776256456777665554055555310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~Ik~l~~~~~Np~~~~~~~~~~~~~l~~~~ldfvV~~D~~~teTa~~ADvVLP~~~~lE~~d~~~~~~~~~~ 560 (728)
T d1vlfm2 481 EYPAPGYSKIKMFWKYGGPHLGTMTATNRYAKMYTHDSLEFVVSQSIWFEGEVPFADIILPACTNFERWDISEFANCSGY 560 (728)
T ss_dssp EESCTTCCCCCEEEEESCCHHHHSSSTHHHHHHTTCTTCCEEEEEESBSCTTGGGCSEEEEBCCGGGSCEEEETTCCBTT
T ss_pred CCCCCCCCCEEEEEEECCCHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCC
T ss_conf 23334677738999907871104633679999862578648999502357517646615666543331253136664442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~i~~~~~~v~P~gEak~d~~I~~~LA~rlG~~~~f~~~~~~~~~~~~~~~~~~~~~~~t~e~l~~~g~~ 640 (728)
T d1vlfm2 561 IPDNYQLCNHRVISLQAKCIEPVGESMSDYEIYRLFAKKLNIEEMFSEGKDELAWCEQYFNATDMPKYMTWDEFFKKGYF 640 (728)
T ss_dssp BTTGGGGSSSCEEEEECCCSCCSTTCBCHHHHHHHHHHHTTCHHHHHTTCCHHHHHHHHHHTSSGGGTCCHHHHHHHCEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCE
T ss_conf 12454114532798644674897567789999999999828966489998899999999860247778999999855988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~TpSGKiE~ys~~l~~~~~~~~~~~~~~~lp~y~p~~e~ 720 (728)
T d1vlfm2 641 VVPDNPNRKKTVALRWFAEGREKDTPDWGPRLNNQVCRKGLQTTTGKVEFIATSLKNFEEQGYIDEHRPSMHTYVPAWES 720 (728)
T ss_dssp ECCCCTTSCCCCTTHHHHTTSCCCSSCSCSCGGGSBTTBSCSSTTSSEESBCHHHHHHHHTTCCCTTSCSBCCCCCCTTS
T ss_pred ECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 66777442210245655302223573237655555668878899830898608988642048877789999986899988
Q ss_pred -------C
Q ss_conf -------9
Q 000235 1717 -------A 1717 (1815)
Q Consensus 1717 -------~ 1717 (1815)
-
T Consensus 721 ~~~yPl~~ 728 (728)
T d1vlfm2 721 QKHSPLAV 728 (728)
T ss_dssp TTTCGGGG
T ss_pred CCCCCCCC
T ss_conf 88999889
|
| >d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Malate synthase G family: Malate synthase G domain: Malate synthase G species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=55275.68 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 t~ri~~~~L~V~~~L~~Fi~~e~lpgt~i~~~~FW~g~~~iv~~l~P~N~~LL~kR~~lQ~~ID~Wh~~~~~~~~d~~~Y 80 (726)
T d1n8ia_ 1 TDRVSVGNLRIARVLYDFVNNEALPGTDIDPDSFWAGVDKVVADLTPQNQALLNARDELQAQIDKWHRRRVIEPIDMDAY 80 (726)
T ss_dssp CCEEEETTEEEEHHHHHHHHHTTSTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred CCCEEECCCEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 98278579265389999986052899998989999879999999696779999999999998999998288888899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 k~FL~eIGYLv~e~~dF~I~T~nVD~EIa~iaGPQLVVPv~NARyALNAANARWGSLYDALYGTD~I~e~~g~~~~~~Yn 160 (726)
T d1n8ia_ 81 RQFLTEIGYLLPEPDDFTITTSGVDAEITTTAGPQLVVPVLNARFALNAANARWGSLYDALYGTDVIPETDGAEKGPTYN 160 (726)
T ss_dssp HHHHHHTTSSCCCCCCCCCCCCSCCHHHHTCCCCEEEEETTCHHHHHHHHGGGEEEHHHHHHSSTTSCCCTTCCCCSSCC
T ss_pred HHHHHHCCCCCCCCCCCEEECCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999729645789984443276787787167972788634178887656545788888751546457788754234433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 p~RG~kVI~~ar~fLD~~~PL~~~s~~dv~~~~i~~~~l~~~~~~~~~~L~~~~qf~G~~g~~~~p~~ill~~n~LHiei 240 (726)
T d1n8ia_ 161 KVRGDKVIAYARKFLDDSVPLSSGSFGDATGFTVQDGQLVVALPDKSTGLANPGQFAGYTGAAESPTSVLLINHGLHIEI 240 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHSCBSSSCGGGCCEEEEETTEEEEECSSCEECBSSGGGEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCCHHHHHHCCCCCCCCHHHEEEECCCCCCHHHHHHHHCCCEEEE
T ss_conf 78999999999999998557688855425385777881365540445566885681533277653055899868817999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~id~~~~iG~~d~Agi~Di~lESA~ttImDcEDSVAaVDaeDKv~~YrNWLGLmkG~L~~~f~K~gk~~~R~Ln~Dr~y~ 320 (726)
T d1n8ia_ 241 LIDPESQVGTTDRAGVKDVILESAITTIMDFEDSVAAVDAADKVLGYRNWLGLNKGDLAAAVDKDGTAFLRVLNRDRNYT 320 (726)
T ss_dssp EECTTSTTGGGSTTCEEEEEEECCSEEEEESSTTCCCCSHHHHHHHHHHHHHHHHTCCBC----------CBCCCCEEEE
T ss_pred EECCCCCCCCCCCCCCHHEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEE
T ss_conf 98778653456867640101200022200455333417838899999999999862456641206611446654564446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~G~~~~L~grsl~LvrnVghlmt~~ail~~dG~eipegi~Da~~t~l~a~hdl~~~~~n~~~~nSr~gsiY~~~PKm~ 400 (726)
T d1n8ia_ 321 APGGGQFTLPGRSLMFVRNVGHLMTNDAIVDTDGSEVFEGIMDALFTGLIAIHGLKASDVNGPLINSRTGSIYIVKPKMH 400 (726)
T ss_dssp CTTSCEEEECSSCEEEEECCCSSCEEEEEEETTCCEEEHHHHHHHHHHHHHGGGGSCCC-----CCCSSSCEEEEECSCC
T ss_pred ECCCCEEEECCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCC
T ss_conf 25897567436415888536664247521226677374304389999999999987146541333147886269840336
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~Ea~~~n~lF~~~E~~LgLp~~TIK~~vmiEt~~asf~meEiLyeLRdhivgLN~GrWDytfS~Ikt~~~~~~~vRk~ 480 (726)
T d1n8ia_ 401 GPAEVAFTCELFSRVEDVLGLPQNTMKIGIMDEERRTTVNLKACIKAAADRVVFINTGFLDRTGDEIHTSMEAGPMVRKG 480 (726)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCTTCEEEEEEECSHHHHTTHHHHHHHTTTTEEEEEECHHHHHHHHHHHTGGGCCBCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHCCEEEEECCCHHHCCCHHHHHHHCCHHHHHH
T ss_conf 88999999999999998728676765888731201132679999999751076446362230235777655313154432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 v~m~~pfm~AY~~~~v~~~~~~Gm~a~~~i~k~~~a~~~~ma~v~~dK~re~~aG~DgaWVahP~la~l~a~~f~~~~~~ 560 (726)
T d1n8ia_ 481 TMKSQPWILAYEDHNVDAGLAAGFSGRAQVGKGMWTMTELMADMVETKIAQPRAGASTAWVPSPTAATLHALHYHQVDVA 560 (726)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHTTCTTTSEEEECCCCCTTCHHHHHHHTTHHHHTTCSEEEESSHHHHHHHHHHHHHSCHH
T ss_pred HHCCHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 20030679999998412254436654577656633483899999998872101588310345862445667888740231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~q~~l~~~~~~~~~d~l~ip~~~~~~~~~~~I~~elrnNi~v~L~Yv~~Wl~qGvGcs~Vpdi~~~gLMED~ATaeISr 640 (726)
T d1n8ia_ 561 AVQQGLAGKRRATIEQLLTIPLAKELAWAPDEIREEVDNNCQSILGYVVRWVDQGVGCSKVPDIHDVALMEDRATLRISS 640 (726)
T ss_dssp HHHHHHTTCCCCCHHHHTCCCBCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECTTCCEEEECHHHHHHHH
T ss_pred HHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 14455421331011022357522257898477899999625899999999980797855776666656237789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~qIwqWl~HGv~t~eqv~~~l~~ma~~vd~qn~~d~~y~~ma~~~~~s~af~aa~~lv~~g~~qp~gytep~lh~~r~~~ 720 (726)
T d1n8ia_ 641 QLLANWLRHGVITSADVRASLERMAPLVDRQNAGDVAYRPMAPNFDDSIAFLAAQELILSGAQQPNGYTEPILHRRRREF 720 (726)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHCC----CCCCCSCGGGCHHHHHHHHHHHTGGGSGGGCSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999997578789999999999999875324798434232236453689999999996488799875448899999999
Q ss_pred -----C
Q ss_conf -----9
Q 000235 1717 -----A 1717 (1815)
Q Consensus 1717 -----~ 1717 (1815)
+
T Consensus 721 k~~~~~ 726 (726)
T d1n8ia_ 721 KARAAE 726 (726)
T ss_dssp HHHHHC
T ss_pred HHHCCC
T ss_conf 874039
|
| >d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Anthrax protective antigen superfamily: Anthrax protective antigen family: Anthrax protective antigen domain: Anthrax protective antigen species: Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
Probab=100.00 E-value=0 Score=54952.78 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~GLlGyYF~g~dF~~l~~~t~~~~~n~~~~~~~~d~l~~~~~~~qSVRWtG~I~p~etGeYtF~tssDdgvrL~IDG 80 (722)
T d1acca_ 1 SSSQGLLGYYFSDLNFQAPMVVTSSTTGDLSIPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDD 80 (722)
T ss_dssp CCCCSCEEEEESSTTSCSEEEEEECSSSBCCBCGGGCTTSCGGGGSCCEEEEEEEEECSSCEEEEEEETTGGGEEEEETT
T ss_pred CCCCCEEEEECCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCEEEEECC
T ss_conf 98886289845898768844312435474454256655566678846889999978479885189997069967999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~VIdnw~~~~~V~LekGk~Y~IrIEY~~~~~~~~~~~lkL~W~~~~~~k~~Ip~~aL~~P~~~~~~s~~~~~~a~~~~~ 160 (722)
T d1acca_ 81 QEVINKASNSNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTSAGP 160 (722)
T ss_dssp EEEEC----CCCEEECTTCEEEEEEEEECSCCCSSSBCCBEEEECSSSCEEECCTTTEECCCCSCCCC------------
T ss_pred EEEECCCCCCCEEEEECCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCEECHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89320355531189857978889999862788776402799980698623246065501855456556643457776654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~DtDnDgI~n~~E~nGyTI~v~n~~s~a~~w~d~~ea~~G~~K~vSnP~~a~T~GDPyTD~ekvag~~d~ans~~t~N 240 (722)
T d1acca_ 161 TVPDRDNDGIPDSLEVEGYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARH 240 (722)
T ss_dssp -CCCTTSSSSCHHHHHHCEEEEECSSCEEEEECCHHHHHTTTCCCBCCCTTCSSTTSSSSCHHHHHHTCSCTTSCGGGGS
T ss_pred CCCCCCCCCCCCHHHCCCCEEEEECCCCEEECCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 45565566651113126965775046630320467213116335441476545678987621301004467666831138
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 PlVAayPsV~V~m~~lilS~~~~it~~~g~s~S~s~s~s~s~s~T~t~~~g~s~~a~~s~~~~s~sVSagys~S~t~Tva 320 (722)
T d1acca_ 241 PLVAAYPIVHVDMENIILSKNEDQSTQNTDSETRTISKNTSTSRTHTSEVHGNAEVHASFFDIGGSVSAGFSNSNSSTVA 320 (722)
T ss_dssp TTBCCCCCEEEEEEEEEEEECC------------CEEEEEEEEECCCCBC----------------CBCCCCCCEEEEEE
T ss_pred CCEECCCCCCEEEEEEECCCCEEEECCCCCCCCCCEEECCCCCEEECCCEEEEEEEECCCCCCCEEEEECCCCCCEEEEE
T ss_conf 51312786511344653033211321577643375542332313201312256777303467764799622677137540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~s~s~~~~~dWst~~~inta~aa~~n~nv~Y~N~GTa~~~~v~p~~~~~l~~~~~i~ti~a~~~~~~~~l~p~~~yp~ 400 (722)
T d1acca_ 321 IDHSLSLAGERTWAETMGLNTADTARLNANIRYVNTGTAPIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPS 400 (722)
T ss_dssp ECCSCSSCC--------CCCTTCCEEEEEEEEEEECSSSCBCSCCCCEEEEETTTEEEEEECCCTTCCSSCBCTTEEESC
T ss_pred CCCCEECCCCCCCCCCEEECCHHHCEEEEEEEECCCCCCCCEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 22312010256556540262412005740267647774100412671589946994688987214411034388875776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~ia~nt~d~f~s~~i~ln~~ql~~l~~~~~l~let~q~~g~~~~~~~~~~~~~~~~~~~w~~~~~~i~~~ta~i~~ 480 (722)
T d1acca_ 401 KNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDTDQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIF 480 (722)
T ss_dssp TTSCCEESSCSSCTTSCCEEECHHHHHHHHHHCEEEEEECCCCCEEEEEETTTTEEEEEEEEEHHHHHHHHHHHEEEEEE
T ss_pred CCCCCEEEECCCCCCCCEEECCHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHCCEEEEEE
T ss_conf 78884243040016773133378999987569956986034344058996379715430377623566653311469999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~e~rvaa~~~~~p~dkt~p~ltl~ealk~a~~~~~~~g~l~~~~~~i~~~~~~~d~~t~~~~~~ql~~~~~~~ 560 (722)
T d1acca_ 481 NGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIAFGFNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATN 560 (722)
T ss_dssp CTTTSSCEEEEEECBCCC----CCSCCCBHHHHHHHHHCCBCTTSCCEETTEEGGGEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred ECCCCCEEEEEEECCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCEEEECCEEEEEEEEEECHHHHHHHHHHHHCCCCCC
T ss_conf 67998514688861589996772587540999998643761248746777824227899973668999999986156653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~vkl~~~mn~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~n~~~~~s~y~~~~~~~~g~~ 640 (722)
T d1acca_ 561 IYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLK 640 (722)
T ss_dssp TGGGGGGCBCBTTCEEEEEETTSEECTTCCEEECCHHHHHHTTCCEEEECSSEEEECCCHHHHHTEEEEEEEEECTTSCE
T ss_pred CHHHHHCEEECCCCEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCC
T ss_conf 01001030204774599973348876889621541565433344535026566775344529999743225430356610
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~vy~~~~e~~~i~~~~~~~~~~~~~~~~~~~s~k~~~ 720 (722)
T d1acca_ 641 EVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNPNYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYE 720 (722)
T ss_dssp EETTCSTTCCCCEEECTTSCEEEESSTTTTTSCCCCSSTTCEEEEEEEEGGGCCCSCCSSSCCSSTTCCCEEEEEEEHHH
T ss_pred CCCCCEEEEECCHHHHCCCEEEEECCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHEEEEECEEE
T ss_conf 22440245513022212543870330048666458857999578999984133227543677025555443110000043
Q ss_pred -C
Q ss_conf -9
Q 000235 1717 -A 1717 (1815)
Q Consensus 1717 -~ 1717 (1815)
.
T Consensus 721 ~~ 722 (722)
T d1acca_ 721 IG 722 (722)
T ss_dssp HC
T ss_pred CC
T ss_conf 59
|
| >d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PFL-like glycyl radical enzymes superfamily: PFL-like glycyl radical enzymes family: B12-dependent (class II) ribonucleotide reductase domain: B12-dependent (class II) ribonucleotide reductase species: Lactobacillus leichmannii [TaxId: 28039]
Probab=100.00 E-value=0 Score=54868.52 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~l~~~~~~~~~~~~~p~~~~l~~~v~~rtYaR~~~e~~~rEtW~etv~R~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 80 (721)
T d1l1la_ 1 EISLSAEFIDRVKASVKPHWGKLGWVTYKRTYARWLPEKGRSENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAE 80 (721)
T ss_dssp CCCCCHHHHHHHHHHCCCCCCTTHHHHHHTTTCCEETTTTEECCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 94268999997621579997876206998840453787888067899999997526766377654024442235699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~k~lPsgR~L~~aGt~~~~~~~~~~~NC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~lm~G~Gv 160 (721)
T d1l1la_ 81 RLYKLIYGLGATPSGRNLWISGTDYQRRTGDSLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGV 160 (721)
T ss_dssp HHHHHHHTTSEEECHHHHHHTTSHHHHTSTTTTCCEEEEECSCEECCSCSCCCTTSCSSCEETTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCCCCCHHHHHHCCCHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 99999967816897367887687355437761243267631521123212210000123445554479999985668975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 Gf~v~~~~i~~lp~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~DSrEGW~~a~~~ll~~~~~~~~ 240 (721)
T d1l1la_ 161 GFSVARSNISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQDADSIYYRLPDTREGWVLANALLIDLHFAQTN 240 (721)
T ss_dssp EEECCHHHHTTSCCCCCCCEEEEECCTTSTTHHHHHHTTCBCTTTCCCCTTCEEEECCSSHHHHHHHHHHHHHTTSGGGC
T ss_pred CEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 14357675134898766665310013455556643100233332112466630466176788999999999998632555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~g~~v~~DfS~IRP~Gs~Ikg~gG~ASGpvp~~~l~d~~~~~i~~~~grrl~~~~~~di~~~i~~~v~~g~vrrsa~i 320 (721)
T d1l1la_ 241 PDRKQKLILDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGNVRRSAEL 320 (721)
T ss_dssp TTCCCEEEEECTTSCCTTCBCTTSSSBCCCSHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHTTC----CEE
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCC
T ss_conf 55677238986536778885556677675426799998766677231478653310121254353554202102212010
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~dd~~~~~~k~~~~~~~~~~~~~~n~~~~~~a~el~~~i~~~~~~sGEPGi~f~d~a~~~~~~n~~~~~~~~~~i~ 400 (721)
T d1l1la_ 321 ALGSNDDQDFISMKQDQEKLMHHRWASNNSVAVDSAFSGYQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGIDGDVE 400 (721)
T ss_dssp EEEETTCHHHHHGGGCHHHHHHTGGGEEEEEEECTTCCCHHHHHHHHHHHSCCEEEEHHHHHHCSSGGGCCCTTTTTTEE
T ss_pred CCCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 00473189999874021000100013567422100101389999999863634565678898751311357777667433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~tNPCgEi~L~~~~~CNL~sInL~~~~~~~~~~~~~~~~a~~~~~~v~~~~~~~~~~~~~~~~~R~iGlGv~GlaD~l~~ 480 (721)
T d1l1la_ 401 GTNPCGEISLANGEPCNLFEVFPLIAEEQGWDLQEVFALAARYAKRVTFSPYDWEISREIIQKNRRIGISMSGIQDWLLT 480 (721)
T ss_dssp EECTTCCSEEETTCBCCEEEECHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHCCCEEEECSHHHHHHH
T ss_pred ECCCHHHCCCCCCCCCEEHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 10534430445666310101020011011788889999999998764301112378899877502311574317579987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Gi~r~~~~ttiaPTGTiS~i~g~SsGI 560 (721)
T d1l1la_ 481 RLGNRVVTGFKDDFDPETHEAIKVPVYDKRAIKMVDQLYKAVVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGM 560 (721)
T ss_dssp HHSSCSEEEEEEEECTTTCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCEEBCCCHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCCCC
T ss_conf 35817789999999999999724445241067899988533578899999985898634246666888615677745666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 eP~~a~~y~R~v~~~~~dpl~~~l~~~g~~~e~~~~~~~~~vv~~p~~~~~~~~~~f~ta~di~~~~hl~~~a~~Q~~wv 640 (721)
T d1l1la_ 561 HFHYGAYLIQRIRFQDSDPLLPALKACGYRTEADIYTENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWS 640 (721)
T ss_dssp CCBSCSEEEEEEEEETTCTHHHHHHHTTCEEEECSSSTTEEEEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 85524304787504777768999998289626775258873573444576311346257686999999999999521322
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 641 d~~iSkTin~p~~e~~~v~~yl~~~~~g~kGitvl~y~d~sy~qaP~e~i~~e~y~~~~~~~~~~~~~~~~~~~~d~~~l 720 (721)
T d1l1la_ 641 DNAVSCTITFQDSEGDQVESLLRQYRFITKSTSLLPYFGGSLQQAPKEPIDKETYEKRSQEITGNVEEVFSQLNSDVKDL 720 (721)
T ss_dssp SSCBCCEEEECGGGGGGHHHHHHHTTTTCSEEEEEECCCCCCTTCSEEECCHHHHHHHHHHCCSCHHHHHHHHHHHSTTC
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 56374689878854999999999875588179997256997668996827899999999766762787887761465467
Q ss_pred C
Q ss_conf 9
Q 000235 1717 A 1717 (1815)
Q Consensus 1717 ~ 1717 (1815)
-
T Consensus 721 ~ 721 (721)
T d1l1la_ 721 E 721 (721)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Malate synthase G family: Malate synthase G domain: Malate synthase G species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=54812.19 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~i~~~~L~V~~~L~~Fi~~e~lpgtgi~~~~FW~gf~~iv~~l~P~N~~LL~kR~~lQ~~ID~WH~~~~~~~~d~~~Yk 80 (720)
T d1d8ca_ 1 QTITQSRLRIDANFKRFVDEEVLPGTGLDAAAFWRNFDEIVHDLAPENRQLLAERDRIQAALDEWHRSNPGPVKDKAAYK 80 (720)
T ss_dssp CEEEETTEEEEHHHHHHHHHHTHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSCHHHHH
T ss_pred CEEEECCCEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 91554683653899999870438999989899998799999986978899999999999999999985889878989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~FL~~IGYL~~e~~dF~I~T~nVD~EIa~iaGPQLVVPv~NARyALNAANARWGSLYDALYGTD~I~e~~~~~~~Ynp~R 160 (720)
T d1d8ca_ 81 SFLRELGYLVPQPERVTVETTGIDSEITSQAGPQLVVPAMNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDPQR 160 (720)
T ss_dssp HHHHHHTSSCCCCSCCCCCCCCCCHHHHTCCCCEEEEETTCHHHHHHHHGGGEEEHHHHHHTSSSSCCSSCCSSSCCHHH
T ss_pred HHHHHCCCCCCCCCCCEEECCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 99997395457899854332777988871669827886340687766554458888988745665677787654110889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 G~kVI~~ar~fLD~~~PL~~~s~~dv~~~~v~~~~L~~~~~~g~~~~L~~~~qfvGy~g~~~~p~~ill~nn~LHiei~i 240 (720)
T d1d8ca_ 161 GEQVIAWVRRFLDESLPLENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVGYRGDAAAPTCILLKNNGLHIELQI 240 (720)
T ss_dssp HHHHHHHHHHHHHHHSCBSSSCGGGEEEEEEETTEEEEEETTSCEECBSSGGGEEEEESCTTSCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEE
T ss_conf 99999999999997556478777751230035980589843554434125021799814666651034776877999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 d~~~~iG~~d~agi~Di~lEsAittI~D~EDSVAaVDaeDKv~~YrNWLGLMkGdL~~~f~K~gk~~~R~Ln~Dr~y~~~ 320 (720)
T d1d8ca_ 241 DANGRIGKDDPAHINDVIVEAAISTILDCEDSVAAVDAEDKILLYRNLLGLMQGTLQEKMEKNGRQIVRKLNDDRHYTAA 320 (720)
T ss_dssp CTTSTTGGGCTTCEEEEEEECCCEEEEESSTTCCCCSHHHHHHHHHHHHHHHHTCCC-----------CCCCCCEEEEET
T ss_pred CCCCCCCCCCCCCCHHEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCEEECC
T ss_conf 57883235786651211432564001003464234882788999999999999887665544784520121588626656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~G~~~~L~GRsLmlvRNVGHLMt~~aild~~g~eipEgilDa~~T~lia~hdl~~~~nSr~gsiYivkPKm~g~~E~~~~ 400 (720)
T d1d8ca_ 321 DGSEISLHGRSLLFIRNVGHLMTIPVIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAFA 400 (720)
T ss_dssp TSCEEEECCSCEEEEECCCSSCEEEEEECTTSCEEEHHHHHHHHHHHHHHHHHHHCSSCSSSCEEEEECSCCSHHHHHHH
T ss_pred CCCCEEEECCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 66705864445799863665020002561677704124467899999999998863145777636984665685888899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 nd~F~~~E~~LgLp~~TIK~tvmiEt~~asfnm~EiIyelrdh~~gLN~GrwDy~fs~Ikt~~~~~~~i~~d~~k~~~~~ 480 (720)
T d1d8ca_ 401 NKLFTRIETMLGMAPNTLKMGIMDEERRTSLNLRSCIAQARNRVAFINTGFLDRTGDEMHSVMEAGPMLRKNQMKSTPWI 480 (720)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEEEECSHHHHHTHHHHHHTTTTTEEEEEECHHHHHHHHHHHTGGGSCBCCGGGGGGCHHH
T ss_pred HHHHHHHHHHEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCHH
T ss_conf 99999741100423786689985211051551999999998544201044165314488876502654550365500108
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~aY~~~~v~~g~~Ch~rG~~aIGggmaa~P~~ma~m~~dK~~e~~aG~dgaWVahP~la~lha~~f~~v~v~~~Q~~~~~ 560 (720)
T d1d8ca_ 481 KAYERNNVLSGLFCGLRGKAQIGKGMWAMPDLMADMYSQKGDQLRAGANTAWVPSPTAATLHALHYHQTNVQSVQANIAQ 560 (720)
T ss_dssp HHHHHHHHHHHHHTTCTTTSEEEEEECCCTTCHHHHHHHTHHHHHTTCSEEEESSHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999998752787745665676238730235777875201457632123588632033332110153045666640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~lddll~iP~~~~~~~s~~~t~~gl~nNiqviL~Yv~~Wl~qG~GcskVpdI~n~gLMEDaATaeISr~qI 640 (720)
T d1d8ca_ 561 TEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGYVVRWVEQGIGCSKVPDIHNVALMEDRATLRISSQHI 640 (720)
T ss_dssp SCGGGGHHHHHHHHTSCCBCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCEECTTSCEECCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 33333321003332145656788999899999999623799999999981698854676666755146778899999999
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 641 wqWl~HGV~t~eqV~~~~~~ma~~vd~qn~~d~~y~~ma~~~~~s~af~aa~dlv~~g~~qp~gytep~lh~~r~~~k~~ 720 (720)
T d1d8ca_ 641 ANWLRHGILTKEQVQASLENMAKVVDQQNAGDPAYRPMAGNFANSCAFKAASDLIFLGVKQPNGYTEPLLHAWRLREKES 720 (720)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTTTCTTCCCCTTCTTTCHHHHHHHHHHHTGGGSGGGCSHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99997588779999999999999875324798434232236233799999999996488799875438899999985229
|
| >d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane beta-barrels superfamily: Porins family: Ligand-gated protein channel domain: Ferric enterobactin receptor FepA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=54330.21 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~e~VvVTa~~~~~~~~~v~~i~~~~i~~~~~~~~~~~~l~~~pGv~v~~~~~~g~~g~~~~i~iRG~~~~~~~v~vDG~~ 80 (714)
T d1fepa_ 1 DDTIVVTAAEQNLQAPGVSTITADEIRKNPVARDVSKIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILIDGKP 80 (714)
T ss_dssp CCCCCCCHHHHHTTSTTEEEEEHHHHHHSCCSSCTHHHHTTSTTEEEEESCTTCTTTTCEEEEETTSCGGGEEEEETTEE
T ss_pred CCEEEEEEEEEECCCCCEEEECHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCEEEEECCCCCCCEEEECCEE
T ss_conf 97099936760036897399879999643478889999962898799677667777876628996988887459999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~ie~IeVlkG~~s~~yG~~a~gGvIni~Tk~~~~~~~~~~~~~~~~~~~~~~~ 160 (714)
T d1fepa_ 81 VSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKGSGEWHGSWDAYFNAPEHKEEG 160 (714)
T ss_dssp CCGGGGSCCCTTSCCCSCCSTTSSCGGGEEEEEEEETHHHHTTCTTCSSEEEEEEECCCCSSCEEEEEEEEEEESSTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEECCHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCC
T ss_conf 55744445444455556563255798995489999688444126888618999998999877761477666602322211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (714)
T d1fepa_ 161 ATKRTNFSLTGPLGDEFSFRLYGNLDKTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELE 240 (714)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECCCCTTTTTTTCCCEEGGGTTCCCCCCCEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 11112212246645432100014534335654200135555544110123356622320344454421111124221135
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (714)
T d1fepa_ 241 AGYSRQGNLYAGDTQNTNSDSYTRSKYGDETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHTRNSRIPEGLAGGTEGKFN 320 (714)
T ss_dssp EEEEEEEEECCCSCCCCSSCCHHHHHTTSCCEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCCSCCC-------
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
T ss_conf 66310001211112355443234433211235310134434411000366444443100012344445443334222222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (714)
T d1fepa_ 321 EKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWNQQRMKDLSSNTQALTGTNTGGAIDGVSTTDRSPYSKAEIF 400 (714)
T ss_dssp ----CCCEEEEEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEEECCCCCCCC----------------CCCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 34333210001234211210001223454320110122111123454332223211111123335443334663000000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~y~~~~~~~~~~~~~~~G~R~d~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~p~~~~~~~~~~~~~~~~~~~~~ 480 (714)
T d1fepa_ 401 SLFAENNMELTDSTIVTPGLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQGCYAS 480 (714)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEETTTEEEEEEEEEEEEECSTTEEEEEEEEEEEECCCTTTTCTTCEEECSCCCCE--
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 13120000123211112332321111111112211000123321111122333211224300014543333333321123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~gn~~l~pe~~~~~e~G~~~~~~~~~~~~~~f~~~~~d~i~~~~~~~~~~~~~~~~~~~~N~~~~~~~G~E~~~ 560 (714)
T d1fepa_ 481 AGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGSL 560 (714)
T ss_dssp -----EECCTTCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECSSCSCBCTTSCBEEEEEEEEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEEEEEEEE
T ss_conf 43211012454343310011321112211223223211110210012001135666641001343046745555257999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (714)
T d1fepa_ 561 NVPVSETVMWTNNITYMLKSENKTTGDRLSIIPEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKE 640 (714)
T ss_dssp EEEEETTEEEEEEEEEEEEEEETTTCCCSSCCCSEEEEEEEEEEEETTEEEEEEEEEECCBCCCSBCTTSCBCCGGGGCC
T ss_pred EEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCEE
T ss_conf 99845988999999999843545578756788870899999999769879999999998888513333465555767456
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
=
T Consensus 641 ~~~y~~~dl~~~y~~~~~~~~~~~v~Nl~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGR~~~~~~~~~F 714 (714)
T d1fepa_ 641 ISPYSIVGLSATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYMSVNTHF 714 (714)
T ss_dssp BCCEEEEEEEEEEECSSSEEEEEEEESTTCCCBCCCSCSSCEECTTSSSEECCCTTCCCCBCCCEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEEECCCEEEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC
T ss_conf 18869999899999599869999999496984321466532244456543245554445789979999999989
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=100.00 E-value=0 Score=54185.50 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavN 80 (712)
T d1d0xa2 1 NPIHDRTSDYHKYLKVKQGDSDLFKLTVSDKRRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVN 80 (712)
T ss_dssp CTTTCTTSHHHHHHSCCCCSCCCGGGGCCSCCCCCGGGTTCSBGGGCSSCCHHHHHHHHHHHHHTTCCEEEETTEEEEEC
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEECCHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEEEC
T ss_conf 97552157787689997488745564044422398401497533338989889999999999769995165788799988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 P~k~l~iy~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~~~s~~~~~~~ 160 (712)
T d1d0xa2 81 PFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 160 (712)
T ss_dssp CSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHSCC----
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99989999989999971887688998599999999999997389916999679988889999999999998708886665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRFGk~~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~gErnfHIFYqll~g 240 (712)
T d1d0xa2 161 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAG 240 (712)
T ss_dssp -CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 31499999862068887327676789980341378999976888544303677416784588516655417789999858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~l~~~~~~~yL~~~~~~~~~~~dd~~~f~~~~~al~~lgfs~~e~~~i~~iLaaILhLGNi~F~~~~~~~~ 320 (712)
T d1d0xa2 241 ATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGA 320 (712)
T ss_dssp SCHHHHHHHTCCCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCBCCSSSSC
T ss_pred CCHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCE
T ss_conf 99999997179991320202578972168868399999999999875998999999999999998634625763587640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~i~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~~A~~~rdalaK~LY~~LF~wiV~~IN~~l~~~~~~ 400 (712)
T d1d0xa2 321 VLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERKA 400 (712)
T ss_dssp BCSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCS
T ss_pred ECCCHHHHHHHHHHHCCCHHHHHHHHCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 13887999999998198866753303130340577438841798887888999999999999999999875310667654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~IgiLDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~eq~eY~~EgI~~~~i~~~~dn~~~~~Li~~k~p~Gll~ 480 (712)
T d1d0xa2 401 YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILA 480 (712)
T ss_dssp EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------CHHHHHHHHHCTTTTCHHH
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 22345542653103547699998998889999999988778888887631577765666889588899985568876788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 lLdee~~~~~~td~~~l~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfl~KNrD~l~~~~~~ll~~S~n~~ 560 (712)
T d1d0xa2 481 LLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNV 560 (712)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSCTT
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEECCHHHHHCCCHHHHHHHHHHHHCCCHH
T ss_conf 74787607788848999999877436785524356787741367616556672213888551156799999999777199
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 i~~lf~~~~~~~~~~~~~~~~Tv~~~Fk~sL~~Lm~~L~~t~~hFIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~iri 640 (712)
T d1d0xa2 561 VTKLFNDPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRI 640 (712)
T ss_dssp HHHHHHCHHHHCCC-----CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECSSTTCCTTCCCHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHH
T ss_conf 99984688643446678978609999999999999987288987887868078778666687999999987275999999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 641 rr~Gyp~R~~~~eF~~RY~~L~~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~LE~~R~ 712 (712)
T d1d0xa2 641 TRKGFPNRIIYADFVKRYYLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEARE 712 (712)
T ss_dssp HHTSCCEEEEHHHHHHHHGGGSTTCCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHTSCC
T ss_pred HHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCHHHHHHHHHC
T ss_conf 967898636199999999976778777788889999999997697801288549869973779999987509
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=100.00 E-value=0 Score=54030.64 Aligned_cols=1 Identities=100% Similarity=2.430 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 p~~l~~veDl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHif~vA~~ 80 (710)
T d1br2a2 1 PPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADT 80 (710)
T ss_dssp CGGGTTCSBTTSCSSCSHHHHHHHHHHHHHTTCCEEECSSSEEEECCSSCCTTCCHHHHHHTTTCCGGGSCCCHHHHHHH
T ss_pred CCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 98613575433599999899999999998689930538888999779988999988999998089878899809999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~n~iLeaFGnakT 160 (710)
T d1br2a2 81 AYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKT 160 (710)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC------------------CHHHHHHTTHHHHHHHHHEECC
T ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999983899179997189888899999999999987366777665422234443212299999987789997089766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~ylLEksRv~~~~~~ErnfHIFY~ll~G~~~~~~~~l~l~~~~~y~yL~~~ 240 (710)
T d1br2a2 161 VKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNG 240 (710)
T ss_dssp SSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHTTTTCCCTTTCTTSTTS
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEHHHHHCCCCHHHHHHHHCCCHHHCEECCCC
T ss_conf 89998777422344687589948878999710247445674589985133999881899999986503783435342688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~d~~~f~~l~~Al~~lGf~~~e~~~i~~vlaaILhLGni~F~~~~~~~~~~~~~~~~~~~~a~LLgv~~~~L~ 320 (710)
T d1br2a2 241 HVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFT 320 (710)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCBCC----CCBCSCCHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 74567856799999999999874999999999999999998551424420356665323683899999988568889997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~L~~~~~~~~~e~i~~~l~~~~A~~~rdalak~LY~~LF~wiV~~iN~~l~~~~~~~~~~IgiLDifGFE~f~~NsfEQ 400 (710)
T d1br2a2 321 RSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQ 400 (710)
T ss_dssp HHHHCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CEEEEEEECCCCCCCSSBCHHH
T ss_pred HHHEEEEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHH
T ss_conf 30140379945862311405888899999999999999999999888887466423566414677306743467565999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 LcINy~NE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~~~lie~~~~p~Gil~lLdee~~~p~~td~~~l~kl 480 (710)
T d1br2a2 401 LCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKL 480 (710)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCHHHHHHHHCCSSSCCHHHHHHHHC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99988889999999998888887788760766435665677624567774257886246553354338787648999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~ 560 (710)
T d1br2a2 481 IQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAK 560 (710)
T ss_dssp HHHTTTSTTEEECC-----CEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTC-------------
T ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98717886667775457887048987066378705648876542256999999985886899998522232222000011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~~~~~~~Tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~Gvle~vri~r~ 640 (710)
T d1br2a2 561 MTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQ 640 (710)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHC
T ss_conf 34456777666668887659999999999999987178986887869277778887797999999987277999999966
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 641 Gyp~R~~~~eF~~RY~~L~~~~~~~~~~d~~~~~~~lL~~l~~~~~~~~iG~TkVFlr~~~~~~LE~~R~ 710 (710)
T d1br2a2 641 GFPNRIVFQEFRQRYEILAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERD 710 (710)
T ss_dssp SCCEEEEHHHHHHHHGGGGTTSSCSSCCCHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEECCCHHHHHHHHHC
T ss_conf 8976552999999999768351457788989999999997598953398569869977789999977419
|
| >d1by5a_ f.4.3.3 (A:) Ferric hydroxamate uptake receptor FhuA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane beta-barrels superfamily: Porins family: Ligand-gated protein channel domain: Ferric hydroxamate uptake receptor FhuA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=53021.34 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~a~~~vTatr~~~~~~d~p~sv~vit~~~i~~~~~~~~~d~L~~~pGv~v~~~g~~~~~~~i~iRG~~~ 80 (697)
T d1by5a_ 1 QESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAA 80 (697)
T ss_dssp CCCTTSCCSSSSCCEESTTTSSCEEGGGCSSCEEEEEHHHHHHHCCSSHHHHTTTCTTEECCTTTTCCSSCCCEETTBCC
T ss_pred CCCCCCCCCCEEECEECCEECCCCCHHHCCCEEEEECHHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCCEEEEECCCC
T ss_conf 99887998856722145607898997896935999899999761899899998639997994467888656599938768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~v~iDG~~~~~~~~~~~~i~~~~Ie~IEVlkG~~s~lyG~~a~gGvIni~Tk~~~~~~~~~~~~~~g~~~~~~~~ 160 (697)
T d1by5a_ 81 EGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTG 160 (697)
T ss_dssp TTSCCCEEETTEECCCBTTBCCCCCGGGEEEEEEEESCCHHHHSSCCTTEEEEEEECCCCSSCEEEEEEEEETTTEEEEE
T ss_pred CCCCEEEEECCEECCCCCCCCCCCCHHHCEEEEEEECCHHHCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 88832399899893587665466897895089999688333327888628999998999877851489875024765421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (697)
T d1by5a_ 161 FDFSDSLDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLP 240 (697)
T ss_dssp EEEEEESSSSSSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEECSSTTEEEEEEEEEEEEEECCCCCCBCSBTTTBCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEECHHCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 12245522222222111001124454310012211111111020367532012000002455454101013678634332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (697)
T d1by5a_ 241 NGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADK 320 (697)
T ss_dssp TSCCCCTTCCCSCTTCEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEEEEEEEEEEEETTSGGGTTCHHHHTSCGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 22346743336765333343110134442335464423210101024523323211123346742122211244444311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (697)
T d1by5a_ 321 GHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPVNTDFDFNAKDP 400 (697)
T ss_dssp GSEEEEEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECTTSEEEEESSSCCCCCCCSSCCCT
T ss_pred CCCCCCCCCCCCCCCCCCCEECEECCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 13234421000011245311010023222134310133211310113434320103677652011001355532223323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (697)
T d1by5a_ 401 ANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYS 480 (697)
T ss_dssp TSEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEEEECCTTSEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCEEECCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCCCCCC
T ss_conf 44345433432210011100000146411200110123233344432111233331010033111111132221013432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~e~~~~~e~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~n~g~~~~~G~E~~~~~~ 560 (697)
T d1by5a_ 481 ESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKRP 560 (697)
T ss_dssp EEEECCCCBCTTSCBCCCEEEEEEEEEEEECCSSSCCEEEEEEEEEEEEEEEEECSSCCSCEEEEEEEEEEEEEEEEEEC
T ss_pred CEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEE
T ss_conf 10110222234344443233210000000113343222111123332121112443443100022135788877777887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~ty~~~~~~~~~~~~g~~~~~~P~~~~~~~~~y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~y~~ 640 (697)
T d1by5a_ 561 LSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANSFKVGSYTV 640 (697)
T ss_dssp SSSSEEEEEEEEEEEEEEEECTTTTTCCCTTCCSEEEEEEEEEECCSSTTTTEEEEEEEEEECCEESSTTCCSEECCEEE
T ss_pred ECCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEECCEEE
T ss_conf 45998999999999999953775678874588220899999999447876778999999999705824888888588899
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------~ 1717 (1815)
=
T Consensus 641 ~dl~~~y~~~~~~~~~~~l~l~v~Nl~d~~Y~~~~~~~~~~~~g~gR~~~~~~~y~F 697 (697)
T d1by5a_ 641 VDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 697 (697)
T ss_dssp EEEEEEEETTTTTCTTCEEEEEEESTTCCCCEEEEEETTEEEECCCCEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCCCEEEEEEEEECCCCHHHHCCCCCCCEEECCCEEEEEEEEEEC
T ss_conf 988999993246777659999999588982342463677666889989999999989
|
| >d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neutral endopeptidase (neprilysin)
domain: Neutral endopeptidase (neprilysin)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=52944.89 Aligned_cols=1 Identities=0% Similarity=-1.722 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~vC~s~~C~~~a~~l~~~mn~s~dPCdDFY~yvCg~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 80 (696)
T d1dmta_ 1 GICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQ 80 (696)
T ss_dssp CBCCSHHHHHHHHHHHHHCCTTSCTTTCHHHHHHHHHHHHCCCCTTCSEEEHHHHHHHHHHHHHHHHHSSCCTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 97498899999999998389998813418988476188748899866462679999999999999998666657980999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 k~~~~y~sC~~~~~~~~~~~~~l~~~l~~~~~wp~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~~l~~~~v~~d~~~~~~ 160 (696)
T d1dmta_ 81 KAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVN 160 (696)
T ss_dssp HHHHHHHHHHCHHHHHHTTTHHHHHHGGGGTCCGGGSTTHHHHTTTTCCHHHHHHHHHHHHCCCCSSEEEEEEETTEEEE
T ss_pred HHHHHHHHHHCHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCC
T ss_conf 99999999868486664370689999998078876774022204532259999999998539884212012578556544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~l~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~e~~l~~~~~~~~~~~ 240 (696)
T d1dmta_ 161 HVIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRN 240 (696)
T ss_dssp EEEEEECCCCSSSSGGGGGCSGGGHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCGGGSC
T ss_pred CCEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf 51124687678984888842216799999999999999998635431388989999999999999999987459987723
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~W~~~l~~~~~~~~~~~~~~~~v~v~~~~yl~~L~~ll~~~~~~~l~nYl~~~ 320 (696)
T d1dmta_ 241 DPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWR 320 (696)
T ss_dssp CHHHHCCEEEHHHHHHHSCCCSTTCCCCHHHHHHHHHGGGTCCCCTTCEEEESCHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 36765152029999875141003677789999999987527887887638995818999999999867879999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~m~~~ik~~~~~~ 400 (696)
T d1dmta_ 321 FIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQT 400 (696)
T ss_dssp HHHHHGGGSCHHHHHTTHHHHHHHHCCSSCCCHHHHHHHHHHHHSHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998765217789999998887608866730889999999866888874789987468878999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 l~~~~Wld~~tk~~a~~Kl~~~~~~ig~p~~~~~~~~~~~~~y~~l~~~~~~~~~n~~~~~~~~~~~~~~~l~~~~~~~~ 480 (696)
T d1dmta_ 401 LDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDE 480 (696)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHCEEEEESCTHHHHCHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHHHHHTTTTSBCCTTC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 85045589999999999998644540687010016455433200255775339999999999999999998457678521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~y~~~~n~i~vp~~~l~~p~~~~~~~~~~~~~~lG~~l~~el~~a~d~~~~~~d~~g~~~~w~~~~~~~~ 560 (696)
T d1dmta_ 481 WISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASN 560 (696)
T ss_dssp CSSCSSCSCCEEETTTTEEEEEGGGSSTTTCCTTSCHHHHHHTHHHHHHHHHHGGGSTTGGGBCTTSCBCCCSCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHH
T ss_conf 13575433100371320145548763532368238899987426899999999888753211078875146666788999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~Cl~~qy~~~~~~~~~~~~~n~~~tl~E~iaD~~gl~~a~~ay~~~~~~~~~~~~lp~~~~t~~QLFFi~~a~~~ 640 (696)
T d1dmta_ 561 FKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLDLNHKQLFFLNFAQVW 640 (696)
T ss_dssp HHHHHHHHHHHHHTCEEGGGTTEECCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999851254444675337100153788889999999999999987278755689999885059999999998
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
=
T Consensus 641 C~~~~~~~~~~~~~~~~h~p~~~RvN~~L~n~~eFa~aF~C~~gs~MnP~~kC~~W 696 (696)
T d1dmta_ 641 CGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 696 (696)
T ss_dssp CEEECHHHHHHHHHHCSSCCHHHHHHHHHHTCHHHHHHTTCCTTSTTCCSCCCCCC
T ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCEEC
T ss_conf 70598889998862488880777868787448989986698997999976674259
|
| >d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lipoxigenase superfamily: Lipoxigenase family: Plant lipoxigenases domain: Lipoxigenase, C-terminal domain species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]
Probab=100.00 E-value=0 Score=52487.30 Aligned_cols=1 Identities=0% Similarity=-0.859 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 lp~~tp~~l~~~r~~el~~lrg~g~g~~~~~driydy~~yndlg~pd~~~~~~rp~lgg~~~~pyprr~rtgr~~~~~dp 80 (690)
T d3bnea1 1 VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP 80 (690)
T ss_dssp CGGGSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97426477999999999980799987787621146420015588988897868998889998999998878989988998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~e~r~~~~yvPrde~f~~~k~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~~f~~i~~ly~~g~~~~~~~~~~~~~ 160 (690)
T d3bnea1 81 NTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTIIP 160 (690)
T ss_dssp TSBCCCSSCCCCGGGSCCCSSGGGCHHHHHHHHHHTHHHHHHHHHHTTSSCSSCCSHHHHHGGGTTCEECCHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCC
T ss_conf 86567888877998886602688999999999999877878777731468889998999999986045570245430265
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~W~~D~eFarQ~LaG~NP~~Irr~~e~P~~~~l~~~~~g~~~s~it~~~i~ 240 (690)
T d3bnea1 161 LPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLD 240 (690)
T ss_dssp STTGGGGCEECSSSEEECCCCGGGSSCSSGGGSHHHHHHHHHHSSSTTCCEECCSSSCCCCSCHHHHCCCCCCCCGGGCC
T ss_pred HHHHHHHHHCCCCCEEECCCCHHHHCCCCCCCCHHHHHHHHHCCCCCHHEEECCCCCCCCCCCHHHHCCHHHHHHHHHHC
T ss_conf 89999986146664043698313123542112679999998637895541544546875778977707513456676504
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~G~Tl~~Al~~grLFi~Dy~dl~~~~~~~i~~~~~~~~~A~~~Lffl~~dG~L~PiAIqL~~~~~~~~~~~~~~~VftP 320 (690)
T d3bnea1 241 LDGYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLP 320 (690)
T ss_dssp CTTCCHHHHHHTTCEEEEECHHHHHHHHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEECCCCTTCCCCCCCEEECC
T ss_pred CCCCHHHHHHHCCCEEEEECHHHHCCCCCCCCCCCCCEEECCHHHEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEECC
T ss_conf 57517999997299899944454164212366767744340200105787897650788835789876667877850589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~d~~~~~~~W~lAK~~v~~aD~~~HqlvsHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~ 400 (690)
T d3bnea1 321 AKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINA 400 (690)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHHHHHHHHHHTSST
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 98876643899999999974577888887543335678899999870488657778862045532578889999852088
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 gGiie~~~~~~~~~~el~~~ayk~w~f~~~~lP~dL~~RGv~~~d~~~p~g~~l~ipdYPYrdDgL~iW~AI~~~V~~yv 480 (690)
T d3bnea1 401 NGIAETTFLPSKYSVEMSSAVYKNWVFTDQALPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYV 480 (690)
T ss_dssp TSHHHHHSTTGGGHHHHHHHHHTTCCGGGGSHHHHHHHTTSEEECTTSTTSEEESSSSCHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 87121003674149999999983375655678799997589752345644433567788626659999999999999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~kd~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gfvPN~P~ 560 (690)
T d3bnea1 481 PLYYARDDDVKNDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPT 560 (690)
T ss_dssp GGTCSSHHHHHTCHHHHHHHHHHHHTTTGGGTTCTTSCCCCSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSTTTSCC
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 51169841234679999999998615688777899997778899999999977864317876441253333570789986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~r~~~P~~~~~~~~~~~~~~e~~~L~tLP~~~qa~~~~~~~~~LS~~~~de~yLG~~~~~~~~~D~~~~~a~~~F~~~L 640 (690)
T d3bnea1 561 ASRRLLPEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKL 640 (690)
T ss_dssp CBCCCCCCTTSHHHHHHHHCHHHHHHHHBCCHHHHHHHHHHHHHHTCBCTTCCBTTCCSCTTSCSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 76378999987036666414087898867738999999999999643888754577778755546768999999999999
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1717 -------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------~ 1717 (1815)
.
T Consensus 641 ~~Ie~~I~~RN~~~~~~~nr~g~~~~PY~~L~Ps~~~g~t~~gIPnSIsI 690 (690)
T d3bnea1 641 KEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 690 (690)
T ss_dssp HHHHHHHHHHHHCGGGHHHHTTTTTCCCCTTCSCCCSBSCSCCCBSSCCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999982786434445788788845618898788676878870459
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=100.00 E-value=0 Score=52027.65 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 gv~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~iA~~Ay~~l 80 (684)
T d1lkxa_ 1 GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSM 80 (684)
T ss_dssp CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 96200379999989999999999858991464888799977998899999899998759987889980899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~s~~~~~~~~~i~~~i~~~n~iLeaFGNAkT~~N~NSSRfgk~~~l~f 160 (684)
T d1lkxa_ 81 RQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 160 (684)
T ss_dssp HHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEE
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 97089818999738989989999999999999727999763059999986113654036664657998675024799996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~g~i~ga~i~~ylLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~~~~~~~~y~~l~~~~~~~~~~~dd~~~f~~ 240 (684)
T d1lkxa_ 161 NAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKI 240 (684)
T ss_dssp CTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHH
T ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 47895725898775401430035554345400499998489999998624677620113433799766788676999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~~al~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~l~~~~i~~~ 320 (684)
T d1lkxa_ 241 IVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTG 320 (684)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC----
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHEEEEEEC
T ss_conf 99999976999999999999999998655616753343356764022288799999986459788897766641345421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~i~~~~~~~~A~~~rdalak~LY~~LF~wiv~~IN~~L~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNE 400 (684)
T d1lkxa_ 321 VGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNE 400 (684)
T ss_dssp ------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCEEEEEECCCCCCCSSBCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 56542599826999999999988988999999999997435330788765625898612687678888678888788889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 kLq~~f~~~if~~e~~~Y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~tD~~~l~kl~~~~~~~~~~~ 480 (684)
T d1lkxa_ 401 KLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNPHLQ 480 (684)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHHSSSSTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999877688999986258888778578557899987466309998688753798866899999999835585655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~F~I~H~aG~V~Y~~~gfl~KN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~Tv~~~f~~ 560 (684)
T d1lkxa_ 481 SYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRPEDSKKRPETAGSQFRN 560 (684)
T ss_dssp CTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC-----------CCHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 67667787667772688613674012103387745102109999999748969999856777865557888709999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~L~~L~~~L~~t~~hfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~~~Gyp~r~~~~eF~~ry~~L~~~~~~~~ 640 (684)
T d1lkxa_ 561 AMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYTRFYNRYKMLCKKTWPSF 640 (684)
T ss_dssp HHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCCBSHHHHTTSCSSSCC-----
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99999998727798798887917767888778799999998746899999996689863629999999999680303466
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000235 1717 -------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------~ 1717 (1815)
.
T Consensus 641 ~~~~~~~~~~il~~~~~~~~~~~iG~tkVFlr~~~~~~~lE~~R 684 (684)
T d1lkxa_ 641 NGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKR 684 (684)
T ss_dssp ----CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEECCCEEEECCHHHHHHHHCCC
T ss_conf 89989999999996698801299648669870531799986349
|
| >d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Arsenite oxidase large subunit species: Alcaligenes faecalis [TaxId: 511]
Probab=100.00 E-value=0 Score=51625.27 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~pp~~~~~~~t~C~~C~vgCg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i 80 (679)
T d1g8ka2 1 NDRITLPPANAQRTNMTCHFCIVGCGYHVYKWPELEEGGRAPEQNALGLDFRKQLPPLAVTLTPAMTNVVTEHDGARYDI 80 (679)
T ss_dssp CCBCCCCBTTCEEEEEECSSBTTCCEEEEEEEETTCCCCSSGGGBTTCCCTTSCCCTTSCCCCGGGEEEEECTTSCEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEE
T ss_conf 99768899887078348979727786699965555545544333445543222355422334531124101146864479
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~i~g~~~~p~n~G~lC~kG~~~~~~~y~P~~~~~dRl~~Pl~R~~g~~~~iSWdEAl~~ia~kl~~i~~~~G~~~i~~~~ 160 (679)
T d1g8ka2 81 MVVPDKACVVNSGLSSTRGGKMASYMYTPTGDGKERLSAPRLYAADEWVDTTWDHAMALYAGLIKKTLDKDGPQGVFFSC 160 (679)
T ss_dssp EEEECTTCTTTTTCCCTTGGGGGGGSCCSSSTTTTCCCSCEEECSSSEEECCHHHHHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred EEECCCCCCCCCCEECHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98658999877875287367579987388867512204880813994788899999999999999999861975589961
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~g~~~~~~e~~~~~~k~~~~~~gt~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~Di~~ad~il~~G~Np~~~~p~~~ 240 (679)
T d1g8ka2 161 FDHGGAGGGFENTWGTGKLMFSAIQTPMVRIHNRPAYNSECHATREMGIGELNNAYEDAQLADVIWSIGNNPYESQTNYF 240 (679)
T ss_dssp CCCSSTTCSHHHHHHHHHHHHTTTCCCCEEETTBSSSCCTTHHHHHTTCCSCCSCHHHHHHCSEEEEESCCHHHHSHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCHHHHCCCCC
T ss_conf 25676763279999988887763177754543334531788999995279888998896157616885788688487530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~gaklVviDPr~t~ta~~Ad~~~~~~~~~wl~irPGtD~Al~~am~~~ii~~~~~ 320 (679)
T d1g8ka2 241 LNHWLPNLQGATTSKKKERFPNENFPQARIIFVDPRETPSVAIARHVAGNDRVLHLAIEPGTDTALFNGLFTYVVEQGWI 320 (679)
T ss_dssp HHTHHHHHHTTTHHHHHHHCTTCCCCCCEEEEECSSCCHHHHHHHHHHCGGGEEEECCCTTCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 01336777788999999886421257987999948987056532134444445244357831899999888999976995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 D~~fv~~~t~Gfde~~~~~~~tpe~aa~itGV~~e~I~~~A~~~a~~~~~~~~~~~~~~~g~G~~~~~~g~~~~~a~~~L 400 (679)
T d1g8ka2 321 DKPFIEAHTKGFDDAVKTNRLSLDECSNITGVPVDMLKRAAEWSYKPKASGQAPRTMHAYEKGIIWGNDNYVIQSALLDL 400 (679)
T ss_dssp CHHHHHHHEECHHHHHHHTCCCHHHHHHHHCCCHHHHHHHHHHHHSCCTTSCCCCEEEEECHHHHTSTTHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEECCCHHHHHHHHHHH
T ss_conf 32332012102455555655429999875388899999999998763022245630476320112125268899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~ltGnig~~G~g~~~~~g~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~ 480 (679)
T d1g8ka2 401 VIATHNVGRRGTGCVRMGGHQEGYTRPPYPGDKKIYIDQELIKGKGRIMTWWGCNNFQTSNNAQALREAILQRSAIVKQA 480 (679)
T ss_dssp HHHTTCSSSTTCCEEECCSBCBCCEECCCSCSSCCCHHHHHHTTCCSEEEEESCCHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98649861268766663223433578666655644301222355676776508984345775057888764200155554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 i~~~np~~~~p~~~~~~~al~~~~~fVV~~D~~~teTa~~ADvVLPaa~~~E~~gt~~n~e~~v~~~~~~v~P~gear~d 560 (679)
T d1g8ka2 481 MQKARGATTEEMVDVIYEATQNGGLFVTSINLYPTKLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPPGTAMAD 560 (679)
T ss_dssp HHTCSSCCHHHHHHHHHHHHTTTCCEEEEEESSCCGGGGTCSEEEEBCCBTTBCEEEECTTCEEEEECCCSCCSTTCBCH
T ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHCEECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCH
T ss_conf 31567536680188999998626836998512588467751064566653334735864886189756655893003789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~I~~~La~rlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~e~l~~~g~~~~~~ 640 (679)
T d1g8ka2 561 CLIAARIANALRDMYQKDGKAEMAAQFEGFDWKTEEDAFNDGFRRAGQPGAPAIDSQGGSTGHLVTYDRLRKSGNNGVQL 640 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHTCSCCCSSHHHHHHHTGGGTTCTTCCCCEETTGGGGGGCCHHHHHHHGGGCEES
T ss_pred HHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf 99999999986032311550333212205888998999999999844478755564456554657899998647887668
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000235 1717 --------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------~ 1717 (1815)
.
T Consensus 641 P~~~~~~~~~~~g~~~l~~dg~F~TpsGK~~f~~~~w~~ 679 (679)
T d1g8ka2 641 PVVSWDESKGLVGTEMLYTEGKFDTDDGKAHFKPAPWNG 679 (679)
T ss_dssp SCCEEETTTEEECCSCSCTTSCCSSTTSSEECCCCCCCC
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEECCCCC
T ss_conf 999866666689974562899889989857899348789
|
| >d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prismane protein-like superfamily: Prismane protein-like family: Carbon monoxide dehydrogenase domain: Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit species: Moorella thermoacetica [TaxId: 1525]
Probab=100.00 E-value=0 Score=51177.45 Aligned_cols=1 Identities=100% Similarity=1.799 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~e~~~~~~t~dpa~~~m~~~~~~~g~~t~~dR~~~q~p~C~fg~~G~CCr~C~~GPCri~~~ 80 (673)
T d1oaoa_ 1 PRFRDLSHNCRPSEAPRVMEPKNRDRTVDPAVLEMLVKSKDDKVITAFDRFVAQQPQCKIGYEGICCRFCMAGPCRIKAT 80 (673)
T ss_dssp CCCSSTTCCSSCCSCCSSSSTTCSCCBCCHHHHHHHHHHHHHTCCCHHHHHHHHCSCCHHHHTTCEECSSTTCCEECCCS
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96200333467543402305433467899799999999998399711016664399999888886103579899748999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~rGVCG~dad~ivaRnlLr~~a~G~Aah~~HaR~~~~~L~~~~~g~~~~~~I~d~~KL~~~a~~~gi~~eg~~~~e 160 (673)
T d1oaoa_ 81 DGPGSRGICGASAWTIVARNVGLMILTGAAAHCEHGNHIAHALVEMAEGKAPDYSVKDEAKLKEVCRRVGIEVEGKSVLE 160 (673)
T ss_dssp SSTTSBCTTCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCSCHHHHHHHHHHTTCCCTTCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 89998713588988999999999999889999999999999999986377867633678999999998198856888899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~A~~~a~~~l~d~~~~~~~~~~~~~~~~a~~~r~~~w~~lgi~p~gi~~ei~~~l~~t~tg~d~D~~~l~~~~lr~Glad 240 (673)
T d1oaoa_ 161 LAQEVGEKALEDFRRLKGEGEATWLMTTINEGRKEKFRTHNVVPFGIHASISELVNQAHMGMDNDPVNLVFSAIRVALAD 240 (673)
T ss_dssp HHHHHHHHHHHHHHCCTTSCCCHHHHTTSCHHHHHHHHHTTCCCSSHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999871435453046887524676799999738885218999999999983289999999999999988766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~g~~l~~~~~d~lfG~P~p~~v~~nlGvlk~~~vnIlV~GH~p~l~~~iv~~~~el~~~ak~~gakGInv~G~cCTg~E 320 (673)
T d1oaoa_ 241 YTGEHIATDFSDILFGTPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEIIVQAAREMEGEAKAAGAKGINLVGICCTGNE 320 (673)
T ss_dssp HHHHHHHHHHHHHHHCCCCCEEEEESGGGCCTTSEEEEEESSCHHHHHHHHHHHHHTHHHHHHTTCSCEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH
T ss_conf 68999999878875589987277057753478986699989983478999999999999999747995499976256887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ml~r~g~p~~gn~~~qE~~l~tGaiD~ivvd~qCi~P~l~~~a~~y~trlitT~~~a~~pGa~hi~~~~~~a~e~a~~ii 400 (673)
T d1oaoa_ 321 VLMRQGIPLVTSFASQELAICTGAIDAMCVDVQCIMPSISAVAECYHTRIITTADNAKIPGAYHIDYQTATAIESAKTAI 400 (673)
T ss_dssp HHHHHCCCEEECGGGHHHHHTTSCCSEEEECSSSCCTTHHHHHTTSSCEEEECBTTBCCTTSEECCCCGGGHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf 76406997156468778986479975399746679998467898628857985674687998660687210778899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~Aie~f~~R~~~~~~v~IP~~~~~~~~GFs~e~i~~~lgg~~~~~~~~~lidaI~~G~IrGvv~ivGC~n~k~~~d~~~ 480 (673)
T d1oaoa_ 401 RMAIEAFKERKESNRPVYIPQIKNRVVAGWSLEALTKLLATQNAQNPIRVLNQAILDGELAGVALICGCNNLKGFQDNSH 480 (673)
T ss_dssp HHHHHHHHHHHTSSSCCCCCCCCEEEEECCCHHHHHHHHHTTCSSCTHHHHHHHHHTTSSCEEEEECCCCCTTSCBTHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHH
T ss_conf 99998654314556877778766527850079999998378865344589999997488873899965899998774179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 v~lakeLik~D~lVLt~GC~a~~~~k~GL~~~e~a~~~aG~gL~~v~~~l~~~~g~~~gIPpVL~~GsCvD~~r~~~ia~ 560 (673)
T d1oaoa_ 481 LTVMKELLKNNVFVVATGCSAQAAGKLGLLDPANVETYCGDGLKGFLKRLGEGANIEIGLPPVFHMGSCVDNSRAVDLLM 560 (673)
T ss_dssp HHHHHHHHHTTEEEEEEHHHHHHHHHHTTTCGGGHHHHCCHHHHHHHHHHHHHTTCSSCCCSEEEEESGGGHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 99999755589899834077777775578885666554041078898875430466579997511224671799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 aLA~~lg~din~LP~~~~apew~eqKAvai~~~~lalGI~~~lGp~ppv~gS~~v~~~L~e~~~~~~gg~~~ve~Dp~~~ 640 (673)
T d1oaoa_ 561 AMANDLGVDTPKVPFVASAPEAMSGKAAAIGTWWVSLGVPTHVGTMPPVEGSDLIYSILTQIASDVYGGYFIFEMDPQVA 640 (673)
T ss_dssp HHHHHHTSCGGGSCEEEEETTCCSHHHHHHHHHHHHTTCEEEESSCCSCTTCHHHHHHHHTHHHHHTSCEEEECSSHHHH
T ss_pred HHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHH
T ss_conf 99998589954587357651478899999999999829818889999766677899999986675327379966899999
Q ss_pred --------------------------------C
Q ss_conf --------------------------------9
Q 000235 1717 --------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------~ 1717 (1815)
.
T Consensus 641 a~~~~~~i~~kR~~Lgi~~~~~~~~~~~~~~~~ 673 (673)
T d1oaoa_ 641 ARKILDALEYRTWKLGVHKEVAERYETKLCQGY 673 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 999999999999984997888887530463149
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=0 Score=51018.11 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (671)
T d1r6va_ 1 SKAKDLASLPEIKSQGYHILFGELRDGEYTEGKILVGYNDRSEVDKIVKAVNGKVVLELPQIKVVSIKLNGMTVKQAYDK 80 (671)
T ss_dssp CCCSCSTTCCBCCCCCCCCCBCCCCTTSBCTTEEEEEESSHHHHHHHHHHHTCEEEEEEGGGTEEEEECSSCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCEEEEEECCCCEEEEECCCHHHHHHHHH
T ss_conf 95011244765455124655312445675797499998985379999986487799870465259997472048899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaV 160 (671)
T d1r6va_ 81 IKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAV 160 (671)
T ss_dssp HTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEE
T ss_pred HHHHCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCEEEE
T ss_conf 98736888559876616750232345778510111343444566676764445676852459538788448999978999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 iDtGvd~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~~~g~~GvAp~a~l~~~rv~~~~~~~~~ 240 (671)
T d1r6va_ 161 VDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKDGKGIVGVAPGAKIMPIVIFDDPALVGG 240 (671)
T ss_dssp EESCCBTTSGGGTTTBCCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCSSSSCCCSCTTSEEEEEESBCCHHHHCT
T ss_pred ECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 83883879954637765686654457788887576558997550012244034441453067636888873045566687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~ 320 (671)
T d1r6va_ 241 NGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALD 320 (671)
T ss_dssp TSBCCHHHHHHHHHHHHHTTCSEEEECEEBSCCCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 77354799999988998579829953344666783777999999860373999982589876665876688448998863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~a~fS~~g~~~dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~ 400 (671)
T d1r6va_ 321 YYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPN 400 (671)
T ss_dssp EETTEEEECSSSCCCTTEEEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCEEEECCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78985114431689997149735778575347887544456665421258980664257778789999999999988889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 lt~~~v~~~L~~tA~~~~~~g~~~~~G~G~vna~~Av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (671)
T d1r6va_ 401 AKPWQIRKLLENTAFDFNGNGWDHDTGYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYA 480 (671)
T ss_dssp CCHHHHHHHHHHHCBCSSSSSCBTTTBTCBCCHHHHHHCCCCSSSEEEEEEEEEECTTSCSBCTTEEEEEECSSSCCEEE
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEE
T ss_conf 99999999999529157888988874327417999951757888874211588706877525654311366157714787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~g~~~~~~~~~gt~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 560 (671)
T d1r6va_ 481 KTGPDGIARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPDATQLNVNFNSTLQV 560 (671)
T ss_dssp ECCTTSEEEEEEEECEEEEEEEEEECCCSCCSCTTTSCCCCCSCSSCSCGGGCCEEEEEEEEEBTTBCEEEEECCCCEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCE
T ss_conf 41788537887538961799995787454201214676545522677630224411430201035665123574133301
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~i~~ng~~ip~~~~~~~ 640 (671)
T d1r6va_ 561 KFSTNLSTLKDPQFVVVDPLLRGVYGRVAYARNQTYDLSLLSGQISFGIQTLLPAATDITIQGTVTLNGEDIPVYGVLKA 640 (671)
T ss_dssp EECCCCTTSSSCEEEEECTTCSCEEEEEECCTTCEEECTTCEEEEEEEEECSSCCSSCEEEEEEEEETTEEEEEEEEECT
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEECEEEECCCEECCCCCCCCCCCCEEEECCCCCCCCCEECC
T ss_conf 02675443456655212443244144432256876530001104521741113566674100048871664631120047
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
+
T Consensus 641 g~t~~~~~~~gg~~~~~~~~~~~~~~~~~g~ 671 (671)
T d1r6va_ 641 GTTWTIIDDFGGLNLGTDSQPIYVWWTIFGQ 671 (671)
T ss_dssp TCSEEEEBTTSSCBSSCSSSCCBCCEEEECC
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 7047761368864557777732204888159
|
| >d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Periplasmic nitrate reductase alpha chain species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=0 Score=50939.86 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~kwv~t~C~~C~~~C~i~v~v~dGkvvri~g~~~~p~n~G~lC~KG~~~~~~~y~pdRl~~Pl~R~g~~~~rg~g~f~~i 80 (670)
T d1ogya2 1 IRWSKAPCRFCGTGCGVMVGTRDGQVVATHGDTQAEVNRGLNCVKGYFLSKIMYGEDRLTTPLLRMKDGVYHKEGEFAPV 80 (670)
T ss_dssp CEEEEEECSSCSSCCEEEEEEETTEEEEEEECTTCTTTSSCCCHHHHGGGGSTTBTTCCCSCEESCSSSCCCTTCCCEEC
T ss_pred CCEECCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEE
T ss_conf 96769368997047982999999999998788999867756088787689976699613588197889886888977992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 SWDEAld~iA~kl~~i~~~~G~~si~~~~~g~~~~~~~~~~~~~~~~~~gt~n~~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (670)
T d1ogya2 81 SWDEAFDVMAAQAKLVLKEKAPEAVGMFGSGQWTIWEGYAASKLMRAGFRSNNLDPNARHCMASAATAFMRTFGMDEPMG 160 (670)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCGGGEEEEECTTSCHHHHHHHHHHHHTTSCCCCEEETHHHHTHHHHHHHHHHHSSCSCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 69999999999999999974988799981785206889999999997279986478764443167787642124688768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~D~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~~g~kiividpr~t~ta~~Ad~~l~irPGTD~Al~la~~~vii~~ 240 (670)
T d1ogya2 161 CYDDFEAADAFVLWGSNMAEMHPILWSRLTDRRLSHEHVRVAVLSTFTHRSSDLSDTPIIFRPGTDRAILNYIAHHIIST 240 (670)
T ss_dssp CTTHHHHCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGSCSEEEECCTTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHCCCEEEEECCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 88787517328998127235276157666676653011232222232324443232000168871688999999999976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~l~D~~fv~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~fe~l~~~~~~ytpe~aa~itGV~~~~I~~~A~ 320 (670)
T d1ogya2 241 GRVNRDFVDRHTNFALGATDIGYGLRPEHQLQLAAKGAADAGAMTPTDFETFAALVSEYTLEKAAEISGVEPALLEELAE 320 (670)
T ss_dssp TCCCHHHHHHHEEEEECCSSCCTTCCTTSHHHHSCTTCSSCSCCCBCCHHHHHHHHHTSCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 88257999975244323233233457124555542145654555765499999998728999999987979888799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~a~~~~~~~~~~g~g~~~~~~g~~~~~ai~~L~~ltG~~g~~Gg~~~~~~g~~~~~g~~~~~g~~~~~l~~~~~~~~~~ 400 (670)
T d1ogya2 321 LYADPDRKWMSLWTMGFNQHVRGVWANHMVYNLHLLTGKISEPGNSPFSLTGQPFACGTAREVGTFAHRLPADMVVTNPE 400 (670)
T ss_dssp HTTSTTSCEEEEESHHHHSSTTHHHHHHHHHHHHHHHTCCSBTTBEEEECCCSTTTTTTHHHHTCSTTEETTTEESSCHH
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98625685799852434301127899999999998629643588552246775256776223586654332234568878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~~~Np~~~~p~~~~~~~~~~~~~l~fvVv~D~~~teTa~ 480 (670)
T d1ogya2 401 HRAHAEEIWKLPAGLLPDWVGAHAVEQDRKLHDGEINFYWVQVNNNMQAAPNIDQETYPGYRNPENFIVVSDAYPTVTGR 480 (670)
T ss_dssp HHHHHHHHTTCCTTCSCCSCCCCHHHHHHHHHHTSCCEEEEESCCHHHHSTTCCCCCHHHHHCTTCEEEEEESSCCHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 88999985158643362201106888888863587642588448837742001399999853787169993168996301
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~ADiVLPa~t~~E~~g~~~~~~~~~~~~~k~v~P~geak~d~~I~~~LA~rlg~~~~~~~E~~~~~~~~~g~t~~e~l~~ 560 (670)
T d1ogya2 481 AADLVLPAAMWVEKEGAYGNAERRTHFWHQLVEAPGEARSDLWQLMEFSKRFTTDEVWPEEILSAAPAYRGKTLFEVLFA 560 (670)
T ss_dssp TSSEEEEBCCGGGSCEEEECTTSEEEEECBCSCCSTTCBCHHHHHHHHHTTCCHHHHSCHHHHHHCSSSSSCCTTTTTTC
T ss_pred CCEEEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHC
T ss_conf 06399827741234773412686289963056897456739999999998669914428999972812069978999740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~g~~~~~~~~~~~~~~~~~~~~~~~f~t~~g~~e~~~~~~~~~g~~~~~~~~~~~~~g~~wP~~~~~~t~~~~~~~~~~~ 640 (670)
T d1ogya2 561 NGSVDRFPASDVNPDHANHEAALFGFYPQKGLFEEYAAFGRGHGHDLAPFDTYHEVRGLHWPVVEGEETRWRYREGFDPY 640 (670)
T ss_dssp SSSSSCSBSSSSCSSSBCHHHHSSSBCHHHHHHHHHHTTSSSSSCCCCCTTHHHHSSCEESCCBTTBCCSSSSBBTTBTT
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 59662135765675545531014787887751158687650169988753446650797899889987653323566754
Q ss_pred -----------------------------C
Q ss_conf -----------------------------9
Q 000235 1717 -----------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------~ 1717 (1815)
+
T Consensus 641 ~~~~~~~~~~~~~dg~a~~~~~~~~~p~e~ 670 (670)
T d1ogya2 641 VKPGEGLRFYGKPDGRAVILGVPYEPPAES 670 (670)
T ss_dssp SCSSCSBCCTTSSSCCEEEEECCCCCCSSC
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 567767653438998669986899899889
|
| >d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=50563.91 Aligned_cols=1 Identities=0% Similarity=-1.192 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~w~~tPe~i~~~~~~~i~~~~~~id~I~~~~~~~~Tfen~i~~ld~~~~~l~~~~~~~~~l~~v~~d~ 80 (665)
T d1i1ip_ 1 MSSYTAAGRNVLRWDLSPEQIKTRTEQLIAQTKQVYDTVGTIALKEVTYENCLQVLADIEVTYIVERTMLDFPQHVSSDR 80 (665)
T ss_dssp CCTTCCTTTCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCTTTTHHHHHHHHHHHHHHHHHHHSHHHHCSCH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 98657787886877688899999999999999999999974898999999999999997779999999999987059999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~r~a~~~~~~~l~~~~~~i~~n~~Ly~~l~~l~~~~~~~~L~~E~~rlle~~l~df~~sG~~L~~~~r~r~~~l~~els 160 (665)
T d1i1ip_ 81 EVRAASTEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKRMS 160 (665)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSCTTSSCHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999986368999999999973866446999999999999999997588899678899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~l~~~F~~nl~~~~~~~~~~~~~L~Glp~~~~~~~~~~~~~~~~itl~~p~~~~~l~~~~~~~lR~~~~~a~~~r~~~~N 240 (665)
T d1i1ip_ 161 ELCIDFNKNLNEDDTSLVFSKAELGALPDDFIDSLEKTDEDKYKVTLKYPHYFPVMKKCCVPETRRKMEMAFHTRCKQEN 240 (665)
T ss_dssp HHHHHHHHHHHHCCCEEEECTGGGTTCCHHHHHTSCBCSSSCEEEESSHHHHHHHHHHCCCHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCHH
T ss_conf 88999999751201452056766337987999999871688716644666642155426757899999998732242026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~l~~il~lR~e~A~LLGf~s~A~~~L~~kMA~spe~V~~FL~~L~~~~~p~a~~E~~~L~~~~~~~~~~~~~~~~~~l 320 (665)
T d1i1ip_ 241 TAILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFILSLKKKECEERGFEYDGKI 320 (665)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 79999999999989986388979999887650376788999999999971444699999999998776553377765666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~pWD~~Yy~~k~r~~~~~~d~~~l~~YFpl~~vl~gl~~l~~~Lfgi~~~~~~~~~~wh~dV~~~~v~d~~~~~~lG~~Y 400 (665)
T d1i1ip_ 321 NAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSFEQVPDAHVWNKSVSLYTVKDKATGEVLGQFY 400 (665)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHGGGCBHHHHHHHHHHHHHHHHTEEEEECTTCCCSSTTCEEEEEEETTTCCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 73317888888776421233101245563788999999999998500345555677760402699998425644045687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 lDl~~R~~K~~~a~~~~~~~~~~~~~~~~q~P~~~lv~Nf~~p~~~~p~lls~~ev~TLFHEfGHalH~lls~~~y~~ls 480 (665)
T d1i1ip_ 401 LDLYPREGKYNHAACFGLQPGCLLPDGSRMMSVAALVVNFSQPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFS 480 (665)
T ss_dssp EECSCCTTSCCSCEEEEEECCCBCTTSCBCCEEEEEECCCCCCCTTSCCBCCHHHHHHHHHHHHHHHHHHHCCCSSGGGS
T ss_pred EECCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 76266854467786764025732356565531677752036898999774445668646988899998864155656455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 Gt~v~~DfvE~pSql~E~~~~~~~vL~~~a~h~~tge~lp~~l~~~~~~~~~~~~~~~~~~ql~~a~~D~~lH~~~~~~~ 560 (665)
T d1i1ip_ 481 GTNVETDFVEVPSQMLENWVWDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNATLDA 560 (665)
T ss_dssp TTCSCTTTTHHHHHHHHGGGGCHHHHHHHCCCTTTCCCCCHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHTTTCSSCCH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 66652565555689998720788999854136667766889999989877558789999999999998999847898646
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~F~Hl~~gY~A~YYsYlws~vlaad~~~~~f~~~~~~n~~~G~~~r~~iL~~Ggs~ 640 (665)
T d1i1ip_ 561 ASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSL 640 (665)
T ss_dssp HHHHHHHHHHHTSSCCCTTCCGGGGCTTTSSSCTTCTTHHHHHHHHHHHHHHHTHHHHCTTCHHHHHHHHHHTTTTTTSS
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 89999999985289999998888858301279541529999999999999999997679999999999999861066984
Q ss_pred ------------------------C
Q ss_conf ------------------------9
Q 000235 1717 ------------------------A 1717 (1815)
Q Consensus 1717 ------------------------~ 1717 (1815)
-
T Consensus 641 ~~~~~~~~f~GR~p~~~a~l~~~gl 665 (665)
T d1i1ip_ 641 DGMDMLQNFLQREPNQKAFLMSRGL 665 (665)
T ss_dssp CHHHHHHHHHSSCCCSHHHHHHHTC
T ss_pred CHHHHHHHHCCCCCCHHHHHHHCCC
T ss_conf 6999999854999983799986779
|
| >d1hhsa_ e.8.1.6 (A:) dsRNA phage RNA-dependent RNA-polymerase {Bacteriophage PHI-6 [TaxId: 10879]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: dsRNA phage RNA-dependent RNA-polymerase domain: dsRNA phage RNA-dependent RNA-polymerase species: Bacteriophage PHI-6 [TaxId: 10879]
Probab=100.00 E-value=0 Score=50493.70 Aligned_cols=1 Identities=100% Similarity=2.330 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~~ap~f~~sd~~~~~lf~nn~~~q~~~~~~~~~~~~E~~~g~~S~DP~~L~Fq~els~~l~~~~p~~~d~~G~v~~nGl 80 (664)
T d1hhsa_ 1 PRRAPAFPLSDIKAQMLFANNIKAQQASKRSFKEGAIETYEGLLSVDPRFLSFKNELSRYLTDHFPANVDEYGRVYGNGV 80 (664)
T ss_dssp CCCCCEEETTSHHHHTTSCSSHHHHHHHHCCCCCCCCEEETTEETTCHHHHHHHHHHHHHHHHHSCCCBCTTSCBCTTCC
T ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99788888603789998625176652443776656465516722548389999999999876416853100133015621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~tnF~~mr~v~g~pm~P~t~p~~dn~k~~~d~~La~G~~~~r~~li~ra~~~l~f~~~kP~~lki~k~SsTG~P~~tnD~ 160 (664)
T d1hhsa_ 81 RTNFFGMRHMNGFPMIPATWPLASNLKKRADADLADGPVSERDNLLFRAAVRLMFSDLEPVPLKIRKGSSTCIPYFSNDM 160 (664)
T ss_dssp CSCSGGGCEEEEEECBSCCCCCSBCHHHHHHTTCCSSCSSHHHHHHHHHHHHHHHSSCCCCCEEEETTCCCCTTTCCCCH
T ss_pred EECCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCH
T ss_conf 01344035217735576546651003343213334798767899999999999986158522004788877998766588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~K~~~a~~~~~~~~~~g~l~~kg~y~~af~~~d~~g~yY~~y~~q~s~aitl~p~~r~qV~Kpgkvrd~e~a~~~~~~g 240 (664)
T d1hhsa_ 161 GTKIEIAERALEKAEEAGNLMLQGKFDDAYQLHQMGGAYYVVYRAQSTDAITLDPKTGKFVSKDRMVADFEYAVTGGEQG 240 (664)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHCCCSCEEEEEEEECCCCEEEETTTTEEEECCCEEECHHHHHTTTSSS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCCCCEEEEHHHCCCCCCEECCCHHHHHCCCCCCCCHHHHHCCCCCC
T ss_conf 89999999998545133334423414665653024652576513216667144651554431754102257663256456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~l~~aSkd~~~~k~~~G~~vpdgf~A~RrRta~Agp~t~n~piq~~A~g~r~~~~e~Ya~TwH~~~~~~k~~kv~~~~~~ 320 (664)
T d1hhsa_ 241 SLFAASKDASRLKEQYGIDVPDGFFCERRRTAMGGPFALNAPIMAVAQPVRNKIYSKYAYTFHHTTRLNKEEKVKEWSLC 320 (664)
T ss_dssp CEEECBCBCTHHHHHHCCCCCTTCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHTTHHHHCCCSHHHHHHHHHTCSEE
T ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCE
T ss_conf 40146788753010037656650888878765058614136189999999999999988775268378778766226606
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~DVS~~Dt~f~~~~idli~del~~mg~a~~~~~yf~t~lrlpv~v~a~Gpd~g~~L~gDp~npql~~G~~Sg~~ft~L 400 (664)
T d1hhsa_ 321 VATDVSDHDTFWPGWLRDLICDELLNMGYAPWWVKLFETSLKLPVYVGAPAPEQGHTLLGDPSNPDLEVGLSSGQGATDL 400 (664)
T ss_dssp EEEEESSHHHHCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTSCCEEECCSBTTBCCEEESCTTSCCCBCSSCTTSTTHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99513212477738999875588876212199999984200265101588987655143698885543478663207899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 mg~~~~vi~ytvm~ld~~~~~~~a~ikdlpsa~~~md~~l~G~~~~~~~nkgDD~m~~~~r~r~~~~~~~lf~~~ke~~~ 480 (664)
T d1hhsa_ 401 MGTLLMSITYLVMQLDHTAPHLNSRIKDMPSACRFLDSYWQGHEEIRQISKSDDAMLGWTKGRALVGGHRLFEMLKEGKV 480 (664)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGCSSHHHHHHHHHHHHTTCSSEEEEEETTEEEEEECSSTTHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 88888610010122044246788876413103446678873794233123787310001027641667999999860797
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~Ki~~E~G~~F~G~Vl~~~~~~~~~~~~~v~~I~t~~~~~fcpErSv~sg~~~R~~r~rpfp~l~w~~~~~~~~a 560 (664)
T d1hhsa_ 481 NPSPYMKISYEHGGAFLGDILLYDSRREPGSAIFVGNINSMLNNQFSPEYGVQSGVRDRSKRKRPFPGLAWASMKDTYGA 560 (664)
T ss_dssp CSCSSSCEEECSSCEETTEEEECCTTCCGGGCEEEECHHHHHHHHHSCSSCCCTTCSCGGGSSSSCGGGHHHHHHHHHTT
T ss_pred CCCCCEEEEHHHCCEEEEEEEEECCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 77741576532276344314564266784214544567789987418521245553024431499835787754776435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~P~~g~vl~vIe~~~~~~~g~syRa~r~~~~~vd~lal~~~~~~~~~~~~~~~l~~~d~~vL~DP~km~~kwt~~eI~~~ 640 (664)
T d1hhsa_ 561 CPIYSDVLEAIERCWWNAFGESYRAYREDMLKRDTLELSRYVASMARQAGLAELTPIDLEVLADPNKLQYKWTEADVSAN 640 (664)
T ss_dssp STTHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCTTSCTTCCSTTCCHHHHHHHHCGGGGGTTCCGGGSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCHHHCCHH
T ss_conf 85236599999999887511457776506533454889998750333333233671225562483153211776651878
Q ss_pred -----------------------C
Q ss_conf -----------------------9
Q 000235 1717 -----------------------A 1717 (1815)
Q Consensus 1717 -----------------------~ 1717 (1815)
.
T Consensus 641 V~e~v~~~l~~~~~e~~~~sv~~~ 664 (664)
T d1hhsa_ 641 IHEVLMHGVSVEKTERFLRSVMPR 664 (664)
T ss_dssp HHHHHEEEECHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 999998435599999998841589
|
| >d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Molybdenum cofactor-binding domain superfamily: Molybdenum cofactor-binding domain family: Molybdenum cofactor-binding domain domain: Carbon monoxide (CO) dehydrogenase molybdoprotein species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
Probab=100.00 E-value=0 Score=50407.43 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 vDp~~Al~~~Ap~vh~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~~v~~afa~A~~vve~~y~~~~~~h~~mEp~~~vA~~ 80 (663)
T d1n62b2 1 VDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASM 80 (663)
T ss_dssp CCGGGTTSTTCCCCCGGGTTCCEETTEECSSTTEEEEEEEECHHHHHHHHHHCSEEEEEEEEECCBCCCCSSCCEEEEEE
T ss_pred CCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEEEEECCEEEECCCCCEEEEEE
T ss_conf 99789748999660788776533344555566502567437777899998429989999999187601267687189999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 d~~~g~l~v~~stQ~p~~~r~~iA~~Lglp~~~VrVi~~~vGGgFG~K~~~~~~~~~A~~aa~~~grPVkl~~sR~E~~~ 160 (663)
T d1n62b2 81 DKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLS 160 (663)
T ss_dssp ETTTTEEEEEECCSSHHHHHHHHHHHHCCCGGGEEEECCBCSCCTTTTSSCCHHHHHHHHHHHHHSSCEEEECCHHHHHH
T ss_pred ECCCCEEEEEECCCCHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHC
T ss_conf 78999899997995999999999998798879989996887767988887888999999986440898599978777215
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~R~~~~~~~k~g~d~DG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~~~~~~g~Y~ip~~~~~~~~v~TN~~p~g~a~ 240 (663)
T d1n62b2 161 TTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAY 240 (663)
T ss_dssp HSCEECCEEEEEEEEECTTCCEEEEEEEEEEECCSSCCCCCCTTCTTTTGGGTTTTBCCSCEEEEEEEECCSSCCEESCS
T ss_pred CCCCCCCCCEEEEEECCCCCCCCHHHEEEEECCCCCCCCCCCCCCCHHHCCCCCCCEEEEEEEEEEEEECCCCCCCCCCC
T ss_conf 23456550100102100023410222133201222333346632100001356764156678998776112565444111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Rg~g~~pq~~fa~E~~mD~lA~~Lg~DP~e~R~~N~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (663)
T d1n62b2 241 RCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAK 320 (663)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCGGGCSEECTTSCEECCCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34466735689999989999999740215688873356555764444111158763466789999762467776654544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~g~~~~~~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~~DG~v~v~~g~~d~GqG~~T~~~QiaAe~LGi 400 (663)
T d1n62b2 321 QEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGI 400 (663)
T ss_dssp HHHHHTTSCSEEEEEEEEEEECCBSCCCTTTCEETTEECCEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 55531456566354545887764201000034431136775179999679978775234456787413568999998399
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 p~d~V~v~~~DT~~~p~~~~t~~Sr~t~~~g~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~~~~~~~~~~~~~~~ 480 (663)
T d1n62b2 401 PADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMK 480 (663)
T ss_dssp CGGGEEEECCBTTTSCCCCCSCTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGEEECSSEEEETTEEEEEEEHH
T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEECCCCCCCCHHH
T ss_conf 66543332477887888777664332010145788888899998765456541566333134078367615763301299
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~eVeVD~~TG~v~v~r~~~v~D~G~~iNP~~v~gQieGg~~~G 560 (663)
T d1n62b2 481 ELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEA 560 (663)
T ss_dssp HHHHHHHHSCCTTSCSSCEEEEEECCSSCBCCEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 99998513587668877432122356656666311489999986757489979999995871249899999999899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 iG~AL~Ee~~~d~~G~~~~~~~~~Y~ip~~~DvP~i~v~~~e~~~~~~p~GakGvGE~~~~~~~~Ai~nAI~~A~~~~G~ 640 (663)
T d1n62b2 561 FAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNA 640 (663)
T ss_dssp HHHHHTCCCEECTTCCEESCSTTTSCCCCTTTSCCCEEEECCCCCTTSTTSBCCCTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCEEECCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99998388079989988879942257997021688689999569999997861233643044699999999999983499
Q ss_pred ----------------------C
Q ss_conf ----------------------9
Q 000235 1717 ----------------------A 1717 (1815)
Q Consensus 1717 ----------------------~ 1717 (1815)
-
T Consensus 641 r~~~lP~tpe~v~~~~~~~~~~~ 663 (663)
T d1n62b2 641 GHIQMPHDAWRLWKVGEQLGLHV 663 (663)
T ss_dssp CCCCSCCCHHHHHHHHHHTTTTC
T ss_pred CCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 65669999999999999747999
|
| >d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane beta-barrels superfamily: Porins family: Ligand-gated protein channel domain: Outer membrane transporter FecA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=50246.90 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 av~V~g~~~g~~~~~~~~~~p~sv~vi~~~~i~~~~~~~~~d~L~~~pGv~~~~~~~~g~~~~~~~i~iRG~~~~~~~~~ 80 (661)
T d1kmoa_ 1 ALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRS 80 (661)
T ss_dssp CCCCCCCSSTTCCHHHHHTCSSCEEEEEGGGTGGGTCCSHHHHHTTSTTEECCCSBTTBCSTTSCCCEETTSCCGGGCSS
T ss_pred CEEEEECCCCCCCCCCHHHCCCEEEEECHHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCE
T ss_conf 98999425677763647458813899899999762899999999758987997368877777654399869888778743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~v~iDG~~~~~~~~~~~~~~~~~i~~~~Ie~IEV~kG~~s~~yG~~a~gGvIni~Tk~~~~~~~~~~~~~~~~~~~~~~~ 160 (661)
T d1kmoa_ 81 TVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQN 160 (661)
T ss_dssp EEEETTEECSSSTTTCCCCSSCCCCGGGEEEEEEECSSCTTTSCSSGGGCEEEEEECCCCSSCEEEEEEEEEECTTSSCC
T ss_pred EEEECCEECCCCCCCCCCCCCCCCCHHHCCEEEEEECCHHHCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 69999958457767765333367997895389999688122237888637999997676555553210101112210126
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (661)
T d1kmoa_ 161 NPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYD 240 (661)
T ss_dssp CCEEEEEEEEEEECTTSEEEEEEEEEEEECCSSSSCCEEEEEEEEEEEECSSSSEEEEEEEEEEEEEEECCCCBCHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 74332111221011245310002234422232211111112222111111134542221000001335543223422211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (661)
T d1kmoa_ 241 ADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGIEPRYSQIFMIGPS 320 (661)
T ss_dssp HCSSCCSCTTCEEEEEEEEEEEEEEECSSTTEEEEEEEEEEEEEEEEEEEETTEEEECCEEEEEEEEEEEEEEEEEETTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23432122211221111012121001223344333211000111111123565210011110121223421110124653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~G~R~~~~~~~~~~~~~ 400 (661)
T d1kmoa_ 321 AHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMRFEHIESYQNNAIT 400 (661)
T ss_dssp EEEEEEEEEEEEEEEEEEEEEEETTSSSCCCTTSCEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEETTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 22123210001243445310024445653344422111223432000001100210002322111222222222211112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~p~~~~~y~~~~~~~~~~~~~~~~~~p~~~~~~~~~~n~~l~pe~~~~~e~G~~~~~~~~~~~~~~f~~ 480 (661)
T d1kmoa_ 401 GTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLI 480 (661)
T ss_dssp CCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEECCCGGGHHHHHHTSCCCCEEEEEEEEEEEEECSSEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCCCCCEEEEEEE
T ss_conf 23444442222111000134553211001122221112222111111212344222212022101100354301100026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~n~i~~~~~~~~~~~~~~~~~~g~~~~~g~e~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~g~~l~~~p~~~~~~~~ 560 (661)
T d1kmoa_ 481 NFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGV 560 (661)
T ss_dssp EEEEESSCCSSSCCTTCCEEEEEEEEEEEEEEEGGGTCGGGTTEEEEEEEEEEEEEECSSSTTTTCBCTTCCSEEEEEEE
T ss_pred EEECCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
T ss_conf 75222000001222212111112334431000000134555407999999999889920686568876788511799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~y~~~~~~~~~~~~y~~~~~~~~~n~~~~~~~~~~~~~~~y~~~d~~~~y~~~~~~~~~~~~~~v~Nl~d~~Y~~~~~~~ 640 (661)
T d1kmoa_ 561 DYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDD 640 (661)
T ss_dssp EECCTTEEEEEEEEEECCBCSSTTCCCSCCTTSSSSCBCCEEEEEEEEEEECCTTTTCCEEEEEEESTTCCCCEEEECSS
T ss_pred EEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 99808889999999999887236663233566665313887999989999925888877999999958899610003347
Q ss_pred --------------------C
Q ss_conf --------------------9
Q 000235 1717 --------------------A 1717 (1815)
Q Consensus 1717 --------------------~ 1717 (1815)
=
T Consensus 641 ~~~~~~~~~~R~~~~~~~~~F 661 (661)
T d1kmoa_ 641 NNKGIYAGQPRTLYMQGSLKF 661 (661)
T ss_dssp TTCEEEECCCSEEEEEEEEEC
T ss_pred CCCCEEECCCEEEEEEEEEEC
T ss_conf 874166479979999999989
|
| >d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Molybdenum cofactor-binding domain superfamily: Molybdenum cofactor-binding domain family: Molybdenum cofactor-binding domain domain: Carbon monoxide (CO) dehydrogenase molybdoprotein species: Hydrogenophaga pseudoflava [TaxId: 47421]
Probab=100.00 E-value=0 Score=49946.14 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~eAl~~~Ap~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gd~~~afa~A~~vve~~y~~~~~~h~~mEp~~~vA~~d~~ 80 (657)
T d1ffvb2 1 IDALKPDAPVLREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPI 80 (657)
T ss_dssp HHHTSTTCCCSCGGGTTCCEETTEECSSTTEEEEEEEECHHHHHHHHHHCSEEEEEEEEECCBCCCCSSCCEEEEEEETT
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCEEEEEEEEECCEEEECCCCCEEEEEEECC
T ss_conf 92779999776677776544445766666645653257731099998539989999999798612277787399999789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~g~l~v~~~tQ~p~~~r~~iA~~Lglp~~~VrV~~~~vGGgFG~K~~~~~~~~~a~~aa~~~grPVkl~~sR~e~~~~~~ 160 (657)
T d1ffvb2 81 KGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTA 160 (657)
T ss_dssp TTEEEEEECCSCHHHHHHHHHHHHCCCGGGEEEECCCCSCCTTTTSSCCHHHHHHHHHHHHHTSCEEEECCHHHHHHHSC
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHCCCC
T ss_conf 99899998984999999999999799879989997987656677787888999999997754897699965145203466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~r~~~~~~~k~g~d~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~~~~~~g~Y~ip~~~~~~~~v~TN~~p~g~~~Rgg 240 (657)
T d1ffvb2 161 FARDYHMDGELAATPDGKILGLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYRCS 240 (657)
T ss_dssp EECCEEEEEEEEECTTCCEEEEEEEEEEECCSSCCCCCCTTCTTTTGGGTTTTBCCSEEEEEEEEECCSSCCEESCSSCT
T ss_pred CCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEECCEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 66661158777355789674244565215544323457511456764014563000217999887531366665202112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~g~pq~~fa~E~~mD~lA~~Lg~DP~e~R~~N~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (657)
T d1ffvb2 241 FRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRAD 320 (657)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHBCCGGGCSEECTTSCEECCCCHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 44336799988888777776266899999985221112345555565467762777678899875312222456666532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~G~G~a~~~~~~g~~~~~~~~~~~~~~~~~a~v~i~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~~~V~ 400 (657)
T d1ffvb2 321 PNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQ 400 (657)
T ss_dssp TTCSEEEEEEEEEEECCBCCCCTTTCEETTEESCEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEE
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCEEEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCHHCCE
T ss_conf 36883014323788774113323222210120367279999833641022001234431135688777887188610031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 v~~~DT~~~P~~~gt~~Sr~t~~~g~Av~~Aa~~l~~~l~~~aa~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 480 (657)
T d1ffvb2 401 VEEGDTSTAPYGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQA 480 (657)
T ss_dssp EECCBTTTSCCCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEECSSEEEESSCTTCEEEHHHHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 02688786989776366544122166788777999997665556643456212301154379757864433089999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~eVeVD~~TG~v~V~r~~~~~D~G~viNP~~v~gQieGg~~~GiG~aL~ 560 (657)
T d1ffvb2 481 YHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMG 560 (657)
T ss_dssp HHCCCTTCCSSEEEEEEECCSSCBCCEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40586556677544324689987531489999999982369779809999996575669899999999899999999983
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 Ee~~~d~~G~~~~~~~~~Y~ip~~~d~P~i~v~~~e~~~~~~p~GaKGvGE~~~~~~~~Ai~nAI~~A~~~tG~r~~~lP 640 (657)
T d1ffvb2 561 QQMPFDAQGNLLGNTLMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGVTHLDMP 640 (657)
T ss_dssp CCCCBCTTCCBCSCSTTTSCCCCTTTSCCCEEEECCCCCTTSTTCBCCCTTHHHHHHHHHHHHHHHHHHGGGTCCCCCSC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 96589999978869900166987121788799999558999998875043754021699999999999983198427799
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000235 1717 ----------------A 1717 (1815)
Q Consensus 1717 ----------------~ 1717 (1815)
-
T Consensus 641 ~Tpe~v~~al~~~~~a~ 657 (657)
T d1ffvb2 641 HTSYRVWKSLKEHNLAL 657 (657)
T ss_dssp CCHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHCCCC
T ss_conf 99999999998627689
|
| >d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Neurolysin (endopeptidase 24.16, thimet oligopeptidase)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=49716.70 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~w~~tpe~i~~~~~~~i~~~~~~id~I~~~~~~~~tfen~i~~ld~~~~~l~~~~~~~~~l~~v~~d~~~r~aa~~~~~ 80 (654)
T d1s4bp_ 1 LRWDLSAQQIEERTRELIEQTKRVYDQVGTQEFEDVSYESTLKALADVEVTYTVQRNILDFPQHVSPSKDIRTASTEADK 80 (654)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCTTTTHHHHHHHHHHHHHHHHHHHSHHHHCSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 97746899999999999999999999996799899999999999999887999999999998705999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~l~~~~~~i~~n~~Ly~~l~~l~~~~~~~~L~~E~~r~le~~~~dF~~sG~~L~~~~r~r~~~l~~els~L~~~F~~nl~ 160 (654)
T d1s4bp_ 81 KLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLN 160 (654)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998856799999999998072302599999999999999999818839989999999999999898899999754
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~l~Glp~~~l~~~~~~~~~~~~itl~~p~~~~~l~~~~~~~lRk~~~~a~~~r~~~~n~~~l~~il~lR 240 (654)
T d1s4bp_ 161 EDTTFLPFTLQELGGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKEENSAILKELVTLR 240 (654)
T ss_dssp HCCCEEEECTTTTTTCCTTTTTSSEECTTSCEEEESSHHHHHHHHHHCCCHHHHHHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 53445665365305898799999875026866983376565545421676789999999975026210089999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~e~A~LLGf~s~A~y~L~~kMA~spe~V~~FL~~L~~~~~p~a~~E~~~L~~~~~~~~~~~~~~~~~~l~pWD~~yy~~k 320 (654)
T d1s4bp_ 241 AQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERAVILELKRAECERRGLPFDGRIRAWDMRYYMNQ 320 (654)
T ss_dssp HHHHHHTTCSSHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSCCTTTHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99987059986999978854047468899999999998589999999999999998875227987677773208899866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~r~~~~~~d~~~l~~YF~l~~vl~Glf~l~~~Lfgi~f~~~~~~~~wh~dV~~~eV~d~~~~~~lG~~YlDl~~R~~K~~ 400 (654)
T d1s4bp_ 321 VEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHHEEGASAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYG 400 (654)
T ss_dssp HHHHHTCCCHHHHHTTCBHHHHHHHHHHHHHHHHTEEEEECTTCCCSSTTCEEEEEEETTTCCEEEEEEEECSCCTTSCS
T ss_pred HHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCC
T ss_conf 34201333467663002199999999999999855224524667667876169999987899278999600466844367
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~a~~~~~~~~~~~~~~~~q~Pv~~lvcNf~~p~~~~p~lLs~~ev~TlFHEfGHalH~ll~~~~y~~~sGt~~~~DfvE~ 480 (654)
T d1s4bp_ 401 HAACFGLQPGCLRQDGSRQIAIAAMVANFTKPTADAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSGTHVERDFVEA 480 (654)
T ss_dssp SCEEEEEECCEECTTSCEECEEEEEECCCCCCBTTBCCBCCHHHHHHHHHHHHHHHHHHHCCCSSGGGSTTCSCTTTTTH
T ss_pred CCEECCCCCCEECCCCCCCCCEEEEEEECCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 87230310240225556568768897303788899986204787645887787999887516655513661228888887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 pSql~E~~~~~~~vL~~~a~h~~tge~lp~~l~~~~~~~~~~~~~~~~~~ql~~a~~D~~lH~~~~~~~~~~~~~l~~~~ 560 (654)
T d1s4bp_ 481 PSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADPAEEYARLCQEI 560 (654)
T ss_dssp HHHHHHGGGGSHHHHHHTCCCTTTCCCCCHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 79998754478687742213478789886999999986510878999999999999999984789887699999999972
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~~~F~Hl~~gY~a~YYsYlws~vlaad~~~~~F~~~g~~~~~~G~~~r~~iL~~Ggs~~~~e~~~~f~G 640 (654)
T d1s4bp_ 561 LGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRRFLG 640 (654)
T ss_dssp TSSCCCTTCCGGGGCGGGGTTCTTTTTHHHHHHHHHHHHHHHTHHHHCTTCHHHHHHHHHHTTTTGGGSCHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
T ss_conf 68999999878884751127954150999999999999999999766999999999999997006798379999998459
Q ss_pred -------------C
Q ss_conf -------------9
Q 000235 1717 -------------A 1717 (1815)
Q Consensus 1717 -------------~ 1717 (1815)
-
T Consensus 641 r~p~~~a~l~~~gl 654 (654)
T d1s4bp_ 641 RDPKQDAFLLSKGL 654 (654)
T ss_dssp SCCCSHHHHHHTTC
T ss_pred CCCCHHHHHHHCCC
T ss_conf 99980689986789
|
| >d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B, C-terminal domain {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Molybdenum cofactor-binding domain superfamily: Molybdenum cofactor-binding domain family: Molybdenum cofactor-binding domain domain: Xanthine dehydrogenase chain B, C-terminal domain species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=0 Score=49714.76 Aligned_cols=1 Identities=200% Similarity=3.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 P~v~~~eeAl~~~a~~~~~~~~~~~GDve~afa~A~~vve~~y~~~~~~h~~mEp~~~~a~~~~~~l~v~~~tQ~p~~~r 80 (654)
T d1jrob2 1 PAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQ 80 (654)
T ss_dssp CCCCSHHHHHHHTCBSSSSCEEEEESCHHHHHHTCSEEEEEEEEECCBCCCCSSCCEEEEEEETTEEEEEECCSCHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEEEECCEEEECCCCCEEEEEEECCEEEEEECCCCHHHHH
T ss_conf 96656999941899789998314748999998539989999999898505677687699999799899998996889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~A~~lgl~~~~VrV~~~~vGGgFG~K~~~~~~~~~~aa~~a~~~grPVk~~~sR~e~~~~~~~r~~~~~~~~~~~~~d 160 (654)
T d1jrob2 81 HKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADAS 160 (654)
T ss_dssp HHHHHHHTCCGGGEEEEECCCSCCTTTTSSTHHHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCCBCCEEEEEEEEECSS
T ss_pred HHHHHHHCCCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCEEEEEEEEECCC
T ss_conf 99999969987998999588875887788777289999999999878998999754230014576667899998887378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 G~i~a~~~~~~~~~Ga~~~~~~~~~~~~~~~~~g~Y~~p~~~~~~~~v~tn~~~~ga~Rg~G~~~~~fa~E~~~De~A~~ 240 (654)
T d1jrob2 161 GKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARG 240 (654)
T ss_dssp SCEEEEEEEEEEEEESSCTTHHHHHHHHHHHTTTTBCCSEEEEEEEEEECSSCCCCCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHH
T ss_conf 96889986432025544454576544200025664013236543346641353455210257645431362277777877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 lg~DP~e~R~~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~ 320 (654)
T d1jrob2 241 MGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRT 320 (654)
T ss_dssp TTCCHHHHHHHHBCCCC-----------------CCCCBCTTCCBCCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHTCSS
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 49988999998356851024555677777652025676455573021021589999998736877765555653236876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~g~G~a~~~~~~g~~~~~~~~~~~~a~v~l~~DG~v~v~~g~~d~GQG~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~p~ 400 (654)
T d1jrob2 321 LARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPN 400 (654)
T ss_dssp EEEEEEEEEEEEECSCSSGGGCEEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSCS
T ss_pred CCEEEEEEEEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 53489996776777513576776415999938998899838767898678889999999858962036999426888886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl~~~aA~~l~~~~~~l~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 480 (654)
T d1jrob2 401 TSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYA 480 (654)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEETTEEEETTEEEEHHHHHHHHHHTTCCCEEEEEEE
T ss_pred CCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 65445654422225023332322222232666886099800112028879985774215689999975357744445446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~ga~~~eVeVD~~TG~v~V~r~~~v~D~G~viNP~~v~gQi~Ggi~~GiG~AL~Ee~~~d 560 (654)
T d1jrob2 481 TPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWD 560 (654)
T ss_dssp CCSCEEETTTTEEECCSCEEEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHTTTCCCCBC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEC
T ss_conf 88665442236688755445458999999970579579999999995886569899999999899999999971882799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~G~~~~~~~~dY~ip~~~D~P~i~~v~~~e~p~~~~~p~GakGiGE~~~~~~~~a~~AI~dA~~a~G~~~~~l~~P~TP 640 (654)
T d1jrob2 561 HCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATP 640 (654)
T ss_dssp TTSCBSCCSTTTSCCCCGGGSCSEEEEEEECCCCSSCCGGGBCCCSSGGGGGGHHHHHHHHHHHTTSCSSCCCCCSSCCH
T ss_pred CCCCCCCCCHHHCCCCCCHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 99989889940252987020588237999837999999987413556541120889999999998546666558999899
Q ss_pred -------------C
Q ss_conf -------------9
Q 000235 1717 -------------A 1717 (1815)
Q Consensus 1717 -------------~ 1717 (1815)
.
T Consensus 641 e~v~~al~~~~~~~ 654 (654)
T d1jrob2 641 EAVLAAVRRAEGRA 654 (654)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999866169
|
| >d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Sec1/munc18-like (SM) proteins superfamily: Sec1/munc18-like (SM) proteins family: Sec1/munc18-like (SM) proteins domain: Sly1P protein species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=49636.36 Aligned_cols=1 Identities=0% Similarity=0.171 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~WKvLv~D~~t~~iis~~~~~~~Ll~~gV~lve~i~~~ 80 (653)
T d1mqsa_ 1 KDISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQD 80 (653)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCHHHHHHCCCEEEEECCCC
T ss_conf 98887999999999999628988888752323455555678864699996876689988578999987898799855788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 R~~~~~~~aIyfi~Pt~eni~~l~~d~~~~~Y~~~~l~Ft~~~~~~~le~la~~~~~~~~~~~i~~v~e~~ldfiple~~ 160 (653)
T d1mqsa_ 81 RSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPE 160 (653)
T ss_dssp CCCEEEEEEEEEECSCHHHHHHHHHHHHHTCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECSTT
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEECCCC
T ss_conf 88899999899968989999999998572766739999789999999999985200056102025799981158987699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 lFsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~a~~va~~l~~~l~e~~~~~~~~~~~~ 240 (653)
T d1mqsa_ 161 LFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEIIAEKLGTKLRDFVINTNSSSTST 240 (653)
T ss_dssp EEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSSHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred EEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89844841889863973103566899999999999999982899779958997489999999999999997542014544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~LlIlDR~~DliTPLlhq~TYqaLi~dl~~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~l~~~D~~~~ 320 (653)
T d1mqsa_ 241 LQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWM 320 (653)
T ss_dssp -------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECCCSSCTTHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCHHHH
T ss_conf 45777778876999846765312103521099999999872088699636444456666555653210113676768899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~r~~~f~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~v~~lp~~~~~~~~l~~H~~i~~~l~~ 400 (653)
T d1mqsa_ 321 ENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNIFAALLS 400 (653)
T ss_dssp HHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86256389999999999999999999987430344300102211003999999999748999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~l~~~~~lEq~i~~~~~~~~~l~~i~~~~~~~~~d~lRll~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 480 (653)
T d1mqsa_ 401 QLESKSLDTFFEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINALKY 480 (653)
T ss_dssp HHHTTTCHHHHHHTSCCSSHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 97217889999998998627438899999985326988999999999998716898879999999999755998689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 560 (653)
T d1mqsa_ 481 VYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIMDPL 560 (653)
T ss_dssp HHHHHHHHHHHHHHSCCCCC------------------CHHHHHTTTSSCSSSHHHHHHTCCCCCCCHHHHHHHHHHCST
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCH
T ss_conf 99998876521322223444667652002220120231355567665426788875651076678766100267660620
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVF~vGGvTy~Ei~~l~~l~~~~~~~~~~iiiGsT~iin~~~f 640 (653)
T d1mqsa_ 561 NSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEF 640 (653)
T ss_dssp TSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCEECHHHH
T ss_conf 10012555455455457655678877775568998899999889189999999999985268996799932874049999
Q ss_pred ------------C
Q ss_conf ------------9
Q 000235 1717 ------------A 1717 (1815)
Q Consensus 1717 ------------~ 1717 (1815)
+
T Consensus 641 l~~l~~L~~~~~~ 653 (653)
T d1mqsa_ 641 LNEISRLGASNSS 653 (653)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCC
T ss_conf 9999974799899
|
| >d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltooligosyl trehalose synthase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=100.00 E-value=0 Score=49634.88 Aligned_cols=1 Identities=0% Similarity=-0.627 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~atyrlQ~~~gftF~~~~~~LpYL~~LGVs~IyLsPi~~a~~gS~HGYDv~D~~~Vdp~lGt~edf~~LV~aaH~~Gm 80 (653)
T d1iv8a2 1 MISATYRLQLNKNFNFGDVIDNLWYFKDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYRRLIETAHTIGL 80 (653)
T ss_dssp CTTCEEEECCBTTBCHHHHHHTHHHHHHHTCCEEEECCCEEECTTCSSCCSEEEEEEECTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCC
T ss_conf 97477772168999999999825799877998899796678999999983562824206203999999999999998889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~VIlDiVpNH~g~d~~~~~~~Dvl~~G~~S~y~~~fdi~~~~~~~~~p~lg~~~~~~l~~g~~~~~~d~~~~~~~~~~~~ 160 (653)
T d1iv8a2 81 GIIQDIVPNHMAVNSLNWRLMDVLKMGKKSKYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWK 160 (653)
T ss_dssp EEEEEECCSEEECCTTCHHHHHHHHHGGGSTTGGGBCBCTTCSSEEEEEESSCHHHHHHTTCEEEEECSSCEEEEETTEE
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEECCCCCCEECCCCCCC
T ss_conf 89999798756187523888875301799987501234677777667888865100058875332277883201346655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~P~~~~~~~~~~~~~~q~y~l~~W~~~~~~~rFfdv~~l~~lr~e~p~Vf~~v~~~w~elGVDGfRID~vd~L~dp~~y~ 240 (653)
T d1iv8a2 161 LPLTEVGNDIYDTLQKQNYTLMSWKNPPSYRRFFDVNTLIGVNVEKDHVFQESHSKILDLDVDGYRIDHIDGLYDPEKYI 240 (653)
T ss_dssp EECSCCCSSHHHHHTTSSEEEEETTSCCSBCEETTEEEEEEBCTTSHHHHHHHTTTGGGSCCSEEEETTGGGCSCHHHHH
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 78777676310122102467777788730002256656565460239999999999998399689951801116879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~lr~~~~~~~ivvEkil~~~E~l~~~~~gttgYdf~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~k~~il~~~ 320 (653)
T d1iv8a2 241 NDLRSIIKNKIIIVEKILGFQEELKLNSDGTTGYDFLNYSNLLFNFNQEIMDSIYENFTAEKISISESIKKIKAQIIDEL 320 (653)
T ss_dssp HHHHHHHTTCEEEECCCCCTTCCCCSSSSEESSHHHHHHHHGGGCCCHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99998668977999850688742013655444666266664643430667876766356874267999999999986054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~d~~Rla~~l~~~~~~lr~~la~~pvyr~y~~~~~~~~~~~~~~~~~~~~~~~~~~r~qq~~~p~~ak~~edt~fyr~ 400 (653)
T d1iv8a2 321 FSYEVKRLASQLGISYDILRDYLSCIDVYRTYANQIVKECDKTNEIEEATKRNPEAYTKLQQYMPAVYAKAYEDTFLFRY 400 (653)
T ss_dssp SHHHHHHHHHHHTSCHHHHHHHHHHCCSSCCSTTCCCGGGTTTSHHHHHHHHCHHHHHHHHTTHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 15999999987250255999999529956677773224400567899998618267679997706888733678605553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~rl~~lneVg~~p~~~~~~~~~fh~~~~~r~~p~~~~~~~thdtkr~eD~rarl~~lse~p~~w~~~~~~w~~~~~~~~~ 480 (653)
T d1iv8a2 401 NRLISINEVGSDLRYYKISPDQFHVFNQKRRGKITLNATSTHDTKFSEDVRMKISVLSEFPEEWKNKVEEWHSIINPKVS 480 (653)
T ss_dssp CSSGGGCCTTCCTTCCCCCHHHHHHHHHHHTTCCCEECSCCSSCSSCHHHHHHHHGGGGSHHHHHHHHHHHHHHSCCSSC
T ss_pred CHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 20110110368810027999999999997158874322245401210788999986132669999999999984279999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~q~l~g~wp~~~~~~~~~r~~~~~~ka~reak~~t~w~~p~~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (653)
T d1iv8a2 481 RNDEYRYYQVLVGSFYEGFSNDFKERIKQHMIKSVREAKINTSWRNQNKEYENRVMELVEETFTNKDFIKSFMKFESKIR 560 (653)
T ss_dssp HHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHTSSCCSSSCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 72579999988606888878789999999999999874456887898989999999999997267789999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~g~~n~l~q~~l~~~~pgvpd~yqg~e~wd~slvdpdnrrpvd~~~r~~~l~~~~~~~~~~~~~~~~g~~k~~~~~~~l 640 (653)
T d1iv8a2 561 RIGMIKSLSLVALKIMSAGIPDFYQGTEIWRYLLTDPDNRVPVDFKKLHEILEKSKKFEKNMLESMDDGRIKMYLTYKLL 640 (653)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEETTTTSCCCCCSTTGGGCCCCHHHHHHHHHTCSSCCTHHHHCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 88999899999999758999826677464534366998889998599999986134231444136787478999999999
Q ss_pred ------------C
Q ss_conf ------------9
Q 000235 1717 ------------A 1717 (1815)
Q Consensus 1717 ------------~ 1717 (1815)
.
T Consensus 641 ~~r~~~~~~f~~g 653 (653)
T d1iv8a2 641 SLRKQLAEDFLKG 653 (653)
T ss_dssp HHHHHTHHHHHHS
T ss_pred HHHHHCHHHHCCC
T ss_conf 9988697854479
|
| >d1m1ca_ e.42.1.1 (A:) L-A virus major coat protein {Saccharomyces cerevisiae virus L-A [TaxId: 11008]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: L-A virus major coat protein superfamily: L-A virus major coat protein family: L-A virus major coat protein domain: L-A virus major coat protein species: Saccharomyces cerevisiae virus L-A [TaxId: 11008]
Probab=100.00 E-value=0 Score=49496.73 Aligned_cols=1 Identities=0% Similarity=-0.594 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ml~fv~~~~~~~~~~l~~~~~~~gt~~~~~r~r~dfk~d~~~~~r~~~~~Q~~T~~G~~~~~f~~~~S~ldGi~K~yLTl 80 (651)
T d1m1ca_ 1 MLRFVTKNSQDKSSDLFSICSDRGTFVAHNRVRTDFKFDNLVFNRVYGVSQKFTLVGNPTVCFNEGSSYLEGIAKKYLTL 80 (651)
T ss_dssp CHHHHTTTTTTSCCEECCCCCSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEECBCCCEEEEECCCCCCTTSBGGGBCS
T ss_pred CCCHHHCCCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCEEEECEEEECCCCEECCCCEEEECCCCCCHHHCCCCCCCC
T ss_conf 92210001656665521463268604552013530101655640112211453532672244066632011004520144
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 dg~i~~dni~~elk~~~G~~~n~i~~H~~~v~~w~WyDNHVsLLvNmLRlYhL~~L~E~g~l~~g~~p~YdDGHv~i~l~ 160 (651)
T d1m1ca_ 81 DGGLAIDNVLNELRSTCGIPGNAVASHAYNITSWRWYDNHVALLMNMLRAYHLQVLTEQGQYSAGDIPMYHDGHVKIKLP 160 (651)
T ss_dssp SSSBCHHHHHHHHHHTSSCCHHHHHHHHHHTSSCCCCCBCHHHHHHHHHHHHHHHHHHTTCCCCCCCCCEECSSEEECCC
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
T ss_conf 53301778999998614976431332024202440103359999999999999866630674346765213874798458
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~i~~~~~~~~~swP~~~~~~~yP~w~~~~ef~P~~d~p~iDlrgLt~~Ea~~VL~McseW~~~TnfklDf~~P~La~kI 240 (651)
T d1m1ca_ 161 VTIDDTAGPTQFAWPSDRSTDSYPDWAQFSESFPSIDVPYLDVRPLTVTEVNFVLMMMSKWHRRTNLAIDYEAPQLADKF 240 (651)
T ss_dssp CSSCTTTSCSSCCCSSCTTTSCCCBCCEECCSSCSSSSCEEECTTSCHHHHHHHHHHTSCBCCCSSBGGGCCBCCSCSBC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHH
T ss_conf 76777766511258863100138762100011566688457635797788889999864223567742323587787888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~yr~~~~i~~~~~W~~g~~t~~~~~~P~s~viwsALrKYV~~NrLY~qF~tA~~liAq~Mls~~P~TaEg~sWL~h~~eV 320 (651)
T d1m1ca_ 241 AYRHALTVQDADEWIEGDRTDDQFRPPSSKVMLSALRKYVNHNRLYNQFYTAAQLLAQIMMKPVPNCAEGYAWLMHDALV 320 (651)
T ss_dssp EEECSSCCCTTHHHHHTCSCTTTSCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCEECCSSTGGGGTTTSCCEE
T ss_pred HHHCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEE
T ss_conf 76447898513332156301677789843889999999986133888999999999998522376403345344203322
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 nLP~fgSvRGrYpfL~sgeaa~i~~~al~dW~~~ia~P~llF~y~l~~s~a~niGlavR~~~~s~~~~~~~~s~~~~~fl 400 (651)
T d1m1ca_ 321 NIPKFGSIRGRYPFLLSGDAALIQATALEDWSAIMAKPELVFTYAMQVSVALNTGLYLRRVKKTGFGTTIDDSYEDGAFL 400 (651)
T ss_dssp EEECCBCCTTSSTTTTCSCEEEEEHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSSCCCTTTSGGG
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 45631112554433247757664067888899987288999999999998866556544444215643223222333344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~pesfv~savS~atG~d~plngMs~vyv~YP~Ll~td~~~~Vp~~v~e~~gY~iidd~v~~~gvPf~gsPy~~~pia~Fd 480 (651)
T d1m1ca_ 401 QPETFVQAALACCTGQDAPLNGMSDVYVTYPDLLEFDAVTQVPITVIEPAGYNIVDDHLVVVGVPVACSPYMIFPVAAFD 480 (651)
T ss_dssp SHHHHHHHHHHHHHCSEECCCSSSSCEEECGGGSCSSCEEEEECEECCCSCCCCSTTEEEEESCCCCSCTTTTTTCCSSS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEECCCCC
T ss_conf 65776756678750798764556643570544003466336545861777640004743676676589864443224267
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~npy~g~f~i~~p~~~~r~gaiy~~~dAWk~aw~~riaGYdlh~~v~~~~~~~~k~yapn~~sw~~i~~~~~d~~ve~v 560 (651)
T d1m1ca_ 481 TANPYCGNFVIKAANKYLRKGAVYDKLEAWKLAWALRVAGYDTHFKVYGDTHGLTKFYADNGDTWTHIPEFVTDGDVMEV 560 (651)
T ss_dssp SCCTTSSEEEECCCSEECSSEEEEEHHHHHHHHHHHHHTTEEEEECCSSSCCSCSSCCEETTTTEECCCGGGGSSSCCEE
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEECCCCCCEEEEECCCCCCCCCEE
T ss_conf 78864353013781233136623037888888888864155332000014556305644688731552014677642014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~It~~err~~hFi~Lp~f~~P~f~~s~~v~~~~~~t~~~~~~g~~~~a~g~~~~~v~~~~~~~~~~~~~~~~r~~~~i~r 640 (651)
T d1m1ca_ 561 FVTAIERRARHFVELPRLNSPAFFRSVEVSTTIYDTHVQAGAHAVYHASRINLDYVKPVSTGIQVINAGELKNYWGSVRR 640 (651)
T ss_dssp EEEEEEECSSCCSCCCCCSSTTTCCCEEEEEEEEEEEEEETTTEEECCEECCTTTSCCCCTTEEEESCCCTTTTCSCEEC
T ss_pred EEHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEECCCCCCEEECCCCCEEEEECHHHHHHHHHHEEE
T ss_conf 43167775422101402257777763379999610268834776111356530055034104899517788876642365
Q ss_pred ----------C
Q ss_conf ----------9
Q 000235 1717 ----------A 1717 (1815)
Q Consensus 1717 ----------~ 1717 (1815)
+
T Consensus 641 ~~~g~~~vg~t 651 (651)
T d1m1ca_ 641 TQQGLGVVGLT 651 (651)
T ss_dssp CTTCCEECCCC
T ss_pred CCCCCEEEECC
T ss_conf 01583465049
|
| >d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type 2 [TaxId: 10515]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Group II dsDNA viruses VP family: Adenovirus hexon domain: Adenovirus hexon species: Human adenovirus type 2 [TaxId: 10515]
Probab=100.00 E-value=0 Score=49104.96 Aligned_cols=1 Identities=0% Similarity=-0.993 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~Pq~~~~HIaG~daseYLS~~lvqf~~at~syF~l~nKFR~p~vAPT~~VTTerSQRLqlRfvPv~~eDt~~sYk~Rft 80 (646)
T d1p2za1 1 MMPQWSYMHISGQDASEYLSPGLVQFARATETYFSLNNKFRNPTVAPTHDVTTDRSQRLTLRFIPVDREDTAYSYKARFT 80 (646)
T ss_dssp CHHHHHHTTSSSCCHHHHSCHHHHHHHHHHTTTSCCGGGSCCCCCCCCSSSBCCSCCCSEEEECCSEEEECSSEEEEEEE
T ss_pred CCCCHHEEEECCCCHHHHCCHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCEEEEEEE
T ss_conf 98521202412788357538456778774155014565156982388889773043431576746742678732789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 L~VGDnrVLDMgSTYFDIrGvLDRGPSFKPYsGTAYNpLAPK~Apnns~w~~~~~~~~~v~~~~q~~~~~~~~~~~~~n~ 160 (646)
T d1p2za1 81 LAVGDNRVLDMASTYFDIRGVLDRGPTFKPYSGTAYNALAPKGAPNSCEWEQTEDSGRAVAEDEEEEDEDEEEEEEEQNA 160 (646)
T ss_dssp EEECTTCCEEGGGEEEEEEEEEECCTTCBCSSSCSSCTTSCTTCBCSEEECCC---------------------------
T ss_pred EEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCH
T ss_conf 86276503444543323001133799989978765477788789875200235677630102433344223332122220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~T~~~aqap~~g~~it~~Glqig~d~~~~~~~~i~ad~t~qPePQvGe~~w~~~~~~~~gGR~lk~~t~~kPcY 240 (646)
T d1p2za1 161 RDQATKKTHVYAQAPLSGETITKSGLQIGSDNAETQAKPVYADPSYQPEPQIGESQWNEADANAAGGRVLKKTTPMKPCY 240 (646)
T ss_dssp --------EEECCCCEECSCEETTEEBCC---------CCBCCTTTCSCTTCCCSSSSCCCCSSEEEEEECTTSCCCBST
T ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 00035430588406857765454531103333334554223568779898536343455666631247832689986045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 GSYa~Ptn~~GgQs~~~~~~~~~~~~~v~~~ff~n~t~~~~~~~~~~~~~~v~y~E~VnL~~PDTHlVy~p~~~d~~s~~ 320 (646)
T d1p2za1 241 GSYARPTNPFGGQSVLVPDEKGVPLPKVDLQFFSNTTSLNDRQGNATKPKVVLYSEDVNMETPDTHLSYKPGKGDENSKA 320 (646)
T ss_dssp TCEECCSSTTSCCBCCC-------CCCCEEEEECC----------CCCCCEEEEEECBCEECTTEEEEECSSSSCCCCSG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCHH
T ss_conf 35768757768702235566675245321133125553112467766653599845545679986672588854553254
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~l~qqa~pNRPNYIGFRDNFIGLMYYNSggN~GvLagQaSQLNaVVDLQDRNTELSYQylLa~l~dR~rYFsmWNQAVDS 400 (646)
T d1p2za1 321 MLGQQSMPNRPNYIAFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSIGDRTRYFSMWNQAVDS 400 (646)
T ss_dssp GGGCEEEECCCBCEEECGGGTTTBCCSCGGGCCEEEETTTCSBSCCCCTTCCHHHHHHHHHHHHSCTTSCBGGGTBCCCC
T ss_pred HHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 44300258898614562361113476488740210451248748996677740899999988643303445564022213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 YDpdVRIieN~G~Ed~~PnycFpl~G~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Gnv~amEINL~AnLw 480 (646)
T d1p2za1 401 YDPDVRIIENHGTEDELPNYCFPLGGIGVTDTYQAIKANGNGSGDNGDTTWTKDETFATRNEIGVGNNFAMEINLNANLW 480 (646)
T ss_dssp CCHHHHSEECCCCCCCSCEEECCTTSSCSCEEECCEEC----------CCCEECTTSCSCEEECCSSCCCEEECHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCHHCEECCCCCCCEEECHHHHHH
T ss_conf 69985687377615788766307866467766631431576667754302212676110004344571106762878888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 RsFLysNVAlYLPD~yK~tp~nv~~p~n~ntY~YmN~Rvp~~~~vD~~~niGarwS~d~mDnvNPFNHHrN~GL~yRSql 560 (646)
T d1p2za1 481 RNFLYSNIALYLPDKLKYNPTNVEISDNPNTYDYMNKRVVAPGLVDCYINLGARWSLDYMDNVNPFNHHRNAGLRYRSML 560 (646)
T ss_dssp HHHHHHHTGGGSCGGGCBCCSSSCCCSCTTSHHHHHHCBCCGGGGCTTTTTTCEECCHHHHTSCTTSSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 77888777876674454489887789998658874478688771164175445035764556788633355540455664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 LGNgRy~~FhIQVPqKfFAiknLlLLpGtYtYEW~fRKD~NmilQStlGnDLr~dga~i~~~~vnLyasFfPm~hnt~s~ 640 (646)
T d1p2za1 561 LGNGRYVPFHIQVPQKFFAIKNLLLLPGSYTYEWNFRKDVNMVLQSSLGNDLRVDGASIKFDSICLYATFFPMAHNTAST 640 (646)
T ss_dssp HCSSSEEEEEEEECCCCTTTTTCEECSEEEEEEEEEECCHHHHEEESSCCCTTTTTCEEEEEEEEEEEECCCBCHHHHHH
T ss_pred HCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCHHH
T ss_conf 16875201477034488777788748866414788516876786512476534667677777788766506766663889
Q ss_pred -----C
Q ss_conf -----9
Q 000235 1717 -----A 1717 (1815)
Q Consensus 1717 -----~ 1717 (1815)
.
T Consensus 641 Le~mlR 646 (646)
T d1p2za1 641 LEAMLR 646 (646)
T ss_dssp HHHHHT
T ss_pred HHHHHC
T ss_conf 999649
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=0 Score=48861.68 Aligned_cols=1 Identities=100% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~y~~l~~~s~~~~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldr 80 (643)
T d1pg4a_ 1 HKHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDR 80 (643)
T ss_dssp CCBCCCHHHHHHCSSCHHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGG
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHH
T ss_conf 99899789998819999999999999971999999999865058779820156766999877736989713199999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 h~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~ 160 (643)
T d1pg4a_ 81 HLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 160 (643)
T ss_dssp GHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCT
T ss_pred HHHHCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCEEEEECCC
T ss_conf 99749998799997369998569709999999999999999729899999999515444899999999985959993188
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (643)
T d1pg4a_ 161 GFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKA 240 (643)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTS
T ss_pred CCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 89999999999855998999843144313332103447888724455664079996467765564444201334432025
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G 320 (643)
T d1pg4a_ 241 SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACG 320 (643)
T ss_dssp CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTT
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 75457777998883999908875667877998327999999999999619898878999277699888899999999858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~ 400 (643)
T d1pg4a_ 321 ATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGK 400 (643)
T ss_dssp CEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 89999568888799999999999979939980599999998575100245688763799998678999999999998588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~ 480 (643)
T d1pg4a_ 401 EKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERF 480 (643)
T ss_dssp TCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHH
T ss_pred CCCEEEEEECHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHC
T ss_conf 88639972632120665782488766777776630447978999989998988996579999568886555005782234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv 560 (643)
T d1pg4a_ 481 EQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVT 560 (643)
T ss_dssp HHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHHCCCCCCEEECCCEEEECCCCEEEEECCCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEE
T ss_conf 32120268985874878999899209995266418998999998899999998499825699998887999859999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~~~~t~~~p~~l~~~~~~ 640 (643)
T d1pg4a_ 561 LNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEE 640 (643)
T ss_dssp ECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 78999999889999999998538866686489997988879986822899998753784445783335994899999987
Q ss_pred --C
Q ss_conf --9
Q 000235 1717 --A 1717 (1815)
Q Consensus 1717 --~ 1717 (1815)
.
T Consensus 641 ~~~ 643 (643)
T d1pg4a_ 641 KQA 643 (643)
T ss_dssp HHC
T ss_pred HCC
T ss_conf 539
|
| >d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F) {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Processive endocellulase CelF (Cel48F) species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=0 Score=48798.57 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 gp~~~p~~~~~~Y~~rFl~~y~ki~dpanGYFS~~eGIPYHSvETLiVEAPDyGHeTTSEA~SY~lWLEA~yG~~Tgdws 80 (642)
T d1l1ya_ 1 GPTKAPTKDGTSYKDLFLELYGKIKDPKNGYFSPDEGIPYHSIETLIVEAPDYGHVTTSEAFSYYVWLEAMYGNLTGNWS 80 (642)
T ss_dssp CCBCCCCCTTCBHHHHHHHHHHHHHCGGGCSBCTTTCCBCSBSCSCCCSSSSSTTEEEHHHHHHHHHHHHHHHHHHSCCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 98777788882599999999986048777761677797653013577766877750278899999999997450047744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~AW~~mEkyiIP~~~dQP~~s~Ynps~PAtYa~E~~~Ps~YPs~l~~~~~~vG~DPi~~eL~stYGtdiY~MHWL~D 160 (642)
T d1l1ya_ 81 GVETAWKVMEDWIIPDSTEQPGMSSYNPNSPATYADEYEDPSYYPSELKFDTVRVGSDPVHNDLVSAYGPNMYLMHWLMD 160 (642)
T ss_dssp HHHHHHHHHHHHTSCCSTTSTTGGGCBTTBCCCCCCCCSSGGGCSEECCTTTCCCCCCSSHHHHHHHHCSSCCCCCSEEE
T ss_pred HHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 77899998874048876679876677999985147677981119765556877667780789999874754100233341
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 VDN~YGfG~~~~psyINTfQRG~qESvWETvP~Ps~d~fk~Gg~nGfldLFt~d~syakQWkYTnApDADARAVQa~YwA 240 (642)
T d1l1ya_ 161 VDNWYGFGTGTRATFINTFQRGEQESTWETIPHPSIEEFKYGGPNGFLDLFTKDRSYAKQWRYTNAPDAEGRAIQAVYWA 240 (642)
T ss_dssp TTCTTCCSSTTCCEEEECCCSCTTCCSSSCCCEESEECSSSBBTTBTHHHHEECSSCCCEEEEECCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 24433567888873344323577444211389875433101686764222047875765022467886258899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~WAkeqGk~~~is~~~~KAaKMGDyLRYamfDKYFkkIG~~s~~agtGkdSaHYLlsWY~AWGG~~~~~WaWrIGsSh~ 320 (642)
T d1l1ya_ 241 NKWAKEQGKGSAVASVVSKAAKMGDFLRNDMFDKYFMKIGAQDKTPATGYDSAHYLMAWYTAWGGGIGASWAWKIGCSHA 320 (642)
T ss_dssp HHHHHHTTCGGGTHHHHHHHHHHHHHGGGGGBCTTCBCTTCSSCCBCSSSTTBCCSCBSCCEEEEESSSCCEEEECCSEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf 99999738652157889999987888988988999875168888898784058899999997257778982064368645
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 H~GYQNP~AA~aLs~~~~lkPks~ta~~DW~~SL~RQLEfy~WLQS~EG~IAGGATNSw~G~Y~~~P~g~~TFYgM~Yd~ 400 (642)
T d1l1ya_ 321 HFGYQNPFQGWVSATQSDFAPKSSNGKRDWTTSYKRQLEFYQWLQSAEGGIAGGATNSWNGRYEKYPAGTSTFYGMAYVP 400 (642)
T ss_dssp EGGGCCHHHHHHHHHCGGGCCSSSSHHHHHHHHHHHHHHHHHHHBCSSSCBCCEEESSBTTTTBCCCTTCCEETTEEEES
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45554789998860463568799850767999999999999998425655136644677886678999985324500367
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~PVYhDPpSN~WfG~Q~WsmeRvAe~Yy~tGd~~Ak~ildKWv~W~~~~~~~~~~g~f~iPs~L~WsGqPDtWn~s~~gN 480 (642)
T d1l1ya_ 401 HPVYADPGSNQWFGFQAWSMQRVMEYYLETGDSSVKNLIKKWVDWVMSEIKLYDDGTFAIPSDLEWSGQPDTWTGTYTGN 480 (642)
T ss_dssp SCSCBTTBTTCBTHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHTTCEECTTSCEEEEEEEEEESCCCCCCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 76545899877404220218999999987275889999999998886306867998775577761148888778888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~Lhv~V~~~~~DvGva~s~aktL~yYAa~s~~~~~~~d~~a~~~Ak~LLD~~w~~~~~~D~~Gvs~~E~r~DY~Rff~~ 560 (642)
T d1l1ya_ 481 PNLHVRVTSYGTDLGVAGSLANALATYAAATERWEGKLDTKARDMAAELVNRAWYNFYCSEGKGVVTEEARADYKRFFEQ 560 (642)
T ss_dssp TTCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHBCTTSSSBCCCEECGGGGHHHHC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 97389982167643169999999999986427766654678999999999999971335676651576654432231588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 561 ~VYvP~gwtG~mpnGd~I~~g~tF~~iRs~Yk~DP~w~~v~~~l~~G~~P~f~YHRFWaQ~diA~A~~~y~~lf~~~~~~ 640 (642)
T d1l1ya_ 561 EVYVPAGWSGTMPNGDKIQPGIKFIDIRTKYRQDPYYDIVYQAYLRGEAPVLNYHRFWHEVDLAVAMGVLATYFPDMTYK 640 (642)
T ss_dssp BCCCCTTCCEECTTSCEECTTCBGGGGCGGGGGSTTHHHHHHHHHTTCCCEECCCBHHHHHHHHHHHHHHHHHCTTCBCC
T ss_pred CEECCCCCCCCCCCCCCCCCCCEEEECHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 55538986566999873589970434055440699749999998569997146641578889999877787653887778
Q ss_pred -C
Q ss_conf -9
Q 000235 1717 -A 1717 (1815)
Q Consensus 1717 -~ 1717 (1815)
+
T Consensus 641 ~~ 642 (642)
T d1l1ya_ 641 VP 642 (642)
T ss_dssp CC
T ss_pred CC
T ss_conf 98
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=48629.34 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~y~~l~~~Si~~~~~Fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a~~~pd~~Ali~ 80 (640)
T d1ry2a_ 1 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKTPNKKAIIF 80 (640)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTTCTTSEEEEE
T ss_pred CCHHHHHHHHHHCHHHHHHHHHHHHEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98899999997299999999998630671687275346776678778778588997453999999999962989879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~ 160 (640)
T d1ry2a_ 81 EGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRIN 160 (640)
T ss_dssp ECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHH
T ss_pred EECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 83589972687499999999999999898339899899999948989999999875018628606778899999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 240 (640)
T d1ry2a_ 161 DGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSED 240 (640)
T ss_dssp HHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTS
T ss_pred HHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55123321210011002014567777766543024210000013554333334542110000133443222357765455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~ 320 (640)
T d1ry2a_ 241 PLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYP 320 (640)
T ss_dssp CCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSS
T ss_pred CCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf 77899799888999612345654778888888763289834300001560335468999999997198899955887779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te 400 (640)
T d1ry2a_ 321 NYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE 400 (640)
T ss_dssp CTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred CHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99999999997086289717289999985641112337887358999943457689999999860887641785200222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~g 480 (640)
T d1ry2a_ 401 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG 480 (640)
T ss_dssp TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 45422235677767777764432557865899837998525787724899997057875466146977878641368997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 w~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~ 560 (640)
T d1ry2a_ 481 YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTA 560 (640)
T ss_dssp SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC--------
T ss_pred EEECCCCEEECCCCCEEEEECCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCC
T ss_conf 67749820499998789987477889999999988999999984998327999988879898489999997378876633
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 561 ~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~d~~tl~np~~l~~~~~~~~~ 640 (640)
T d1ry2a_ 561 TDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDSVKL 640 (640)
T ss_dssp ----CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHCC
T ss_conf 15789999999999998548887786099996988889985722999999984876545794200598999999997559
|
| >d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Molybdenum cofactor-binding domain superfamily: Molybdenum cofactor-binding domain family: Molybdenum cofactor-binding domain domain: Xanthine oxidase, C-terminal domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=48483.28 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 v~tiedA~~~~~~~~~~~~~~~GDv~~afa~A~~vve~~y~~~~~~h~~mEp~~~vA~~~~~~g~l~i~~~tQ~p~~~r~ 80 (638)
T d1v97a5 1 IITIEDAIKNNSFYGSELKIEKGDLKKGFSEADNVVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQS 80 (638)
T ss_dssp CCSHHHHHHTTCEEEEEEEEEESCHHHHHHHCSEEEEEEEEECCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEEEECCEEEECCCCCEEEEEEECCCCEEEEEECCCCHHHHHH
T ss_conf 93679986468987987766748999998649989999999898613677587499999789997999979818999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~A~~lglp~~~VrV~~~~vGGgFG~K~~~~~~~~~~aa~aa~~~grPVk~~~sR~e~~~~~~~r~~~~~~~~~~~d~dG 160 (638)
T d1v97a5 81 FVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTG 160 (638)
T ss_dssp HHHHHHTSCGGGEEEEECCCSCCTTTTSSTTHHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCCBCCEEEEEEEEECTTS
T ss_pred HHHHHHCCCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCCCCEEEEEEEEEECCC
T ss_conf 99999789889989996987758877786870899999999998699989997556620657898875899887750144
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~i~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~Y~~p~~~~~~~~v~tn~~~~ga~Rg~G~~~~~~a~E~~mD~~A~~l 240 (638)
T d1v97a5 161 TIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTC 240 (638)
T ss_dssp CEEEEEEEEEEEEESSCTTHHHHHHHHHHTTTTTBCCSSEEEEEEEEECSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEECCCCCCCCCCCCHHHHHHCCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 21034577520123346767651000011046640200002443356415566776445666410245778888888742
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 g~DP~e~R~~N~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~~~~~~~ 320 (638)
T d1v97a5 241 GLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFL 320 (638)
T ss_dssp TCCHHHHHHHHBCCTTCBCTTCCBCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHHHCSSEEEEEEEEEEEEEESCSSGGG
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCEEEEEECCCCCC
T ss_conf 88812222220356766543201346777066788875445577777776543013653243640041887641245767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~a~v~i~~dG~v~v~~g~~d~GqG~~T~~aqi~Ae~LGi~~~~V~v~~~dT~~~p~~~gt~gSr~t~~~G~Av~~Aa 400 (638)
T d1v97a5 321 NQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEAC 400 (638)
T ss_dssp CEEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 75422899936997488447655463025679887676525540126642025777898753256202001056999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~l~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~eVeVD~~TG~v~V~ 480 (638)
T d1v97a5 401 QTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLSTTGFYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNL 480 (638)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCEEEEEEECSSCCCBTTTTBSCSCSEEEEEEEEEEEEEETTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEE
T ss_conf 99999999998644477622321120234333123331158763200124667764444337899999996057736888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 r~~~v~D~G~vINP~~v~gQi~Ggi~~GiG~AL~Ee~~~d~~G~~~~~~~~dY~ip~~~dvP~~~~v~~~~~~p~p~~p~ 560 (638)
T d1v97a5 481 RTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIY 560 (638)
T ss_dssp EEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCTTSCBCCCSTTTSCCCCGGGSCSEEEEEECSSCCCTTSGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCC
T ss_conf 99999807856698999999998999999999848867998998987990005598744279715999946899999998
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 561 GaKGvGE~~~~~~~av~~AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPerV~~Al~~~~~~~~~~~~~~~~~~~~~~~ 638 (638)
T d1v97a5 561 ASKAVGEPPLFLGASVFFAIKDAIRAARAQHTNNNTKELFRLDSPATPEKIRNACVDKFTTLCVTGAPGNCKPWSLRV 638 (638)
T ss_dssp GBCCCSSTTGGGGHHHHHHHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHHHHHHSCCTTTTTSCSSCCSTTCCSCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEC
T ss_conf 863462665343277899999999986532114565556448899999999999765775337789898888850009
|
| >d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain {Thauera aromatica [TaxId: 59405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Molybdenum cofactor-binding domain superfamily: Molybdenum cofactor-binding domain family: Molybdenum cofactor-binding domain domain: 4-hydroxybenzoyl-CoA reductase alpha subunit HrcA, C-terminal domain species: Thauera aromatica [TaxId: 59405]
Probab=100.00 E-value=0 Score=48332.68 Aligned_cols=1 Identities=100% Similarity=0.004 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 l~p~eAl~~~ap~vh~~~~~Ni~~~~~~~~GD~~~af~~a~~vve~~y~~~~~~h~~mEp~~~~a~~d~~~~~l~v~~~t 80 (636)
T d1rm6a2 1 MTPKAAMKAGAIALHDDKPNNILREVHAEFGDVAAAFAEADLIREKTYTFAEVNHVHMELNATLAEYDPVRDMLTLNTTT 80 (636)
T ss_dssp CSHHHHHSTTCCCSSTTCTTSEEEEEEEEESCHHHHHHTCSEEEEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECC
T ss_pred CCHHHHHCCCCCEECCCCCCCEEEECCCCCCCHHHHHHHCCEEEEEEEEECCEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf 99789707999740799998188745765689999984399899999997987133677870899997899989999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Q~p~~~r~~iA~~lglp~~~V~V~~~~vGGgFG~K~~~~~~~~~aa~~A~~~grPVk~~~tR~e~~~~~~~r~~~~~~~~ 160 (636)
T d1rm6a2 81 QVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGARTEALHFEIIAGLLARKAKGTVRLLQTREETFIAHRGRPWTEVKMK 160 (636)
T ss_dssp SCHHHHHHHHHHHHTCCGGGEEEECCBCCCCTTTTSSCCHHHHHHHHHHHHHTSEEEEECCHHHHHHHCCCBCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHCCCCCCCCCEEEEEC
T ss_conf 48999999999997898799899979878689898877649999999999739983520340001042467882155211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~g~~~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~g~Y~ip~~~~~~~~v~TN~~~~ga~Rg~G~pq~~~a~E~~~ 240 (636)
T d1rm6a2 161 IGLKKDGKIAALALEATQAGGAYAGYGIITILYTGALMHGLYHIPAIKHDAWRVYTNTPPCGAMRGHGTVDTRAAFEALL 240 (636)
T ss_dssp EEECTTSCEEEEEEEEEEECCSSCTTHHHHHHHHHHTTSSSBCCSCEEEEEEEECCSSSCCCCCSSTTTHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCEEHHHHH
T ss_conf 23445786320356664047865445652221111024663104430377873146875315446753000120014678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 D~lA~~lg~DP~e~R~~N~~~~~~~~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 320 (636)
T d1rm6a2 241 TEMGEELGIDSLKIRQINMLPQIPYVTMYAQRVMSYGVPECLEKVKAASGWEERKGKLPKGRGLGIALSHFVSGTSTPKH 320 (636)
T ss_dssp HHHHHHHTCCHHHHHHHTBCSSSSEECTTCCEECCCCHHHHHHHHHHHHTHHHHTTCSCTTEEEEEEEEEEESSCSSCSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCC
T ss_conf 88888618881037887534200033343333466541778999998632455454300456622432223201356534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~a~a~v~l~~dG~v~v~~g~~d~GqG~~T~~~QiaAe~LGi~~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~g~Av 400 (636)
T d1rm6a2 321 WTGEPHATVNLKLDFDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTFMVGNAS 400 (636)
T ss_dssp CCCCCSEEEEEEECTTCCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTTCHHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 45787631268990699768851544654444310556467773966432321024666454778655665005566788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (636)
T d1rm6a2 401 ISAAEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEVVKAAMVDSGTITVKGTYTCPTEFQGDKKIRGS 480 (636)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEETTEEEETTCSSCCEEHHHHHHHHHTTTCSEEEEEEECCCGGGSCCTTCGGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 98877766667788876406653431002516998588786404899999987405741222000023333454444444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~ga~~~eVeVD~~TG~v~v~~~~~v~D~G~viNP~~v~gQi~Gg~~~GiG~aL~Ee~~~d~G~~~~~~~~~ 560 (636)
T d1rm6a2 481 AIGATMGFCYAAQVVEASVDEITGKVTAHKVWVAVDVGKALNPLAVEGQTQGGVWMGMGQALSEETVYDNGRMVHGNILD 560 (636)
T ss_dssp GTTCCSCEEEEEEEEEEEECTTTCCEEEEEEEEEEECSSCSSHHHHHHHHHHHHHHHHHHHHTCCCCEETTEESCCSTTT
T ss_pred CCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCCHHH
T ss_conf 56786554224589998404675550245899998378566989999999979999999997087481189677799553
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 561 Y~ip~~~d~P~i~v~~~e~~~~~~p~GaKGvGE~~~~~~~~Ai~nAI~~A~G~r~~~lP~tpe~v~~al~~~~~aa 636 (636)
T d1rm6a2 561 YRVPTIVESPDIEVIIVESMDPNGPFGAKEASEGMLAGFLPAIHEAVYEAVGVRATDFPLSPDRITELLDAKEAAA 636 (636)
T ss_dssp SCCCCTTTCCEEEEEEECCCCTTSGGGCCCCSSTTTTTHHHHHHHHHHHHHSCCCCEESCCHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 8598813178858999578999999887704646514479999999998579775768989999999998655249
|
| >d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase {Carboxydothermus hydrogenoformans [TaxId: 129958]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prismane protein-like superfamily: Prismane protein-like family: Carbon monoxide dehydrogenase domain: Ni-containing carbon monoxide dehydrogenase species: Carboxydothermus hydrogenoformans [TaxId: 129958]
Probab=100.00 E-value=0 Score=48095.48 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~s~d~a~~~m~~~~~~~g~~t~~dR~~~q~p~C~fg~~G~CCr~C~~GPCritp~g~~~~~GvCGadadtivARn~l 80 (633)
T d1su7a_ 1 QNLKSTDRAVQQMLDKAKREGIQTVWDRYEAMKPQCGFGETGLCCRHCLQGPCRINPFGDEPKVGICGATAEVIVARGLD 80 (633)
T ss_dssp CTTTBSCHHHHHHHHHHHHHTCCCHHHHHHHHCSCCHHHHHTCEECSSTTCCEECCSSSSSCCSCTTSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98667788999999999980985198888751899998887710114799987588888999863118887699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 r~~a~GaAah~~H~r~~~~~L~~~~~g~~~~~~Ikd~~kL~~~a~~lGi~teg~~~~eiA~~~a~~~l~d~~~~~~~~~~ 160 (633)
T d1su7a_ 81 RSIAAGAAGHSGHAKHLAHTLKKAVQGKAASYMIKDRTKLHSIAKRLGIPTEGQKDEDIALEVAKAALADFHEKDTPVLW 160 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCCCHHHHHHHHHHHTCCCTTCCHHHHHHHHHHHHHHTTSCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99987698999999999999999854878787757699999999982988578888999999999999874344541679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~ap~~r~e~w~~lgi~p~~~~~Ei~e~l~~T~tg~d~D~~~l~~~~lr~glad~~g~~l~~~~~di~fG~P~p~~~~ 240 (633)
T d1su7a_ 161 VTTVLPPSRVKVLSAHGLIPAGIDHEIAEIMHRTSMGCDADAQNLLLGGLRCSLADLAGCYMGTDLADILFGTPAPVVTE 240 (633)
T ss_dssp HHTTSCHHHHHHHHHTTCSCSCHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred HHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 98618888799999849885318999999999984188889999999999988513589999999889855899870552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 v~lGvl~~d~vnIlV~GH~p~l~~~iv~~~~e~~~~ak~~ga~GI~v~G~cCTg~E~l~r~g~p~~~n~~~~E~~~~tGa 320 (633)
T d1su7a_ 241 SNLGVLKADAVNVAVHGHNPVLSDIIVSVSKEMENEARAAGATGINVVGICCTGNEVLMRHGIPACTHSVSQEMAMITGA 320 (633)
T ss_dssp ESGGGCCTTSEEEEEESSCHHHHHHHHHHHHHTHHHHHHTTSSCEEEEEEHHHHHHHHHHHCCCEEECGGGHHHHHHTSC
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf 35553269986699989985178999999899999999747996499986156888762258752338488788646798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 vD~~vvD~qCi~p~l~~~a~~~~t~~I~T~~~a~~pGa~hi~~d~~~~~e~A~~iv~~Aie~f~~R~~~~v~ip~~~~~~ 400 (633)
T d1su7a_ 321 LDAMILDYQCIQPSVATIAECTGTTVITTMEMSKITGATHVNFAEEAAVENAKQILRLAIDTFKRRKGKPVEIPNIKTKV 400 (633)
T ss_dssp EEEEEECSSSCCTHHHHHHHHHCCEEEECBTTBCCTTSEECCCCGGGHHHHHHHHHHHHHHHHHHTTTCCCCCCCCCEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 75499855478998688986208857982675589998743788630889999999999987541477766678876627
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~Gfs~e~i~~~l~~~~~~~~~~plid~I~~G~I~Gvv~vvGC~n~~~~~d~~~~~~akelik~d~lVlttGC~a~~~~~ 480 (633)
T d1su7a_ 401 VAGFSTEAIINALSKLNANDPLKPLIDNVVNGNIRGVCLFAGCNNVKVPQDQNFTTIARKLLKQNVLVVATGCGAGALMR 480 (633)
T ss_dssp EECCCHHHHHHHHHTTCTTCTHHHHHHHHHHTSSCCEEEECSCCCTTSCBTHHHHHHHHHHHHTTCEEEEEHHHHHHHHH
T ss_pred EEEECHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf 74455899998734465445407899999749987389996589988888632999999873589799833067888875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~gl~~~~~~~~~aG~gL~~vc~~lg~~~g~~~~IPpVL~~GsCvDn~ri~~~a~alA~~lg~din~LP~~~~apew~eqK 560 (633)
T d1su7a_ 481 HGFMDPANVDELCGDGLKAVLTAIGEANGLGGPLPPVLHMGSCVDNSRAVALVAALANRLGVDLDRLPVVASAAEAMHEK 560 (633)
T ss_dssp TTTTCGGGHHHHSCHHHHHHHHHHHHHTTCSSCCCSEEEEESSTTHHHHHHHHHHHHHHHTSCGGGSSEEEEETTCCSHH
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHH
T ss_conf 56877667776516238889876233457667899751223457179999999999998589954587301251078899
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 561 Avai~~~~~~lGI~~~lGp~pp~~gS~~v~~~L~e~~~~~~G~~~~ve~Dp~~aa~~i~~~I~~kR~~Lgi~~ 633 (633)
T d1su7a_ 561 AVAIGTWAVTIGLPTHIGVLPPITGSLPVTQILTSSVKDITGGYFIVELDPETAADKLLAAINERRAGLGLPW 633 (633)
T ss_dssp HHHHHHHHHHHTCEEEECSCCTTTTCHHHHHHHHTTTHHHHSCEEEECSSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999998299577899997666889999998645764173798547999999999999999999749999
|
| >d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F) {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Processive endocellulase CelF (Cel48F) species: Clostridium cellulolyticum [TaxId: 1521]
Probab=100.00 E-value=0 Score=47798.56 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 a~~~~~~~Y~~rFl~~y~ki~dpanGYFS~eGiPYHSvETliVEAPDyGHeTTSEA~SY~lWLEA~yG~~Tgdws~~~~A 80 (629)
T d1g9ga_ 1 ASSPANKVYQDRFESMYSKIKDPANGYFSEQGIPYHSIETLMVEAPDYGHVTTSEAMSYYMWLEAMHGRFSGDFTGFDKS 80 (629)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHCGGGCCBCTTSCBCSBSCSSCCSSSSSTTEEEHHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 98876637999999999860587666407778765201467776687775027889999999999746005774577899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 W~~mE~yiIP~~~dQp~ns~~~Ynp~~PAtYa~E~~~Ps~YPs~l~~~~~vG~DPi~~eL~stYGt~diY~MHWL~DVDN 160 (629)
T d1g9ga_ 81 WSVTEQYLIPTEKDQPNTSMSRYDANKPATYAPEFQDPSKYPSPLDTSQPVGRDPINSQLTSAYGTSMLYGMHWILDVDN 160 (629)
T ss_dssp HHHHHHHTSCCTTTSCHHHHTTCCTTSCCCBCCCCSSGGGCSEECBTTSCCCCCSSHHHHHHHHSCSSCCSCBSEEETTC
T ss_pred HHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 99887404787567888764566999985157677980119655567887687807899998638874111455452243
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~YGfG~~g~~t~~psyINTfQRG~qESvWETvP~Ps~d~fk~Gg~nGfldLFt~d~~syakQWkYTnApDADARAvQa~Y 240 (629)
T d1g9ga_ 161 WYGFGARADGTSKPSYINTFQRGEQESTWETIPQPCWDEHKFGGQYGFLDLFTKDTGTPAKQFKYTNAPDADARAVQATY 240 (629)
T ss_dssp SSSCCSTTCSSCSSEEEECCCSCTTCCGGGCCCEESEECSSSBBTTBTGGGTEECSSCCCCEEEEEBCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 33456789999886155432357744421148997444321058787501105787467661203679862588999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 wA~~WAkeqG~~is~~~~KAaKMGDyLRYamfDKYFkkIG~~~~aG~GkdSaHYLlsWY~aWGG~~~~~WaWrIGsSh~H 320 (629)
T d1g9ga_ 241 WADQWAKEQGKSVSTSVGKATKMGDYLRYSFFDKYFRKIGQPSQAGTGYDAAHYLLSWYYAWGGGIDSTWSWIIGSSHNH 320 (629)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHGGGGGBCTTCEETTEEEEECCSGGGBCCSCBSCCEEEEESSSCCEEEECCSEEE
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 99999997482268889999987888988998999886158788888851588999999870577788622642686454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~GYQNP~AA~aLs~~~~lkPks~ta~~DW~~SL~RQlEfy~WLQS~EG~IAGGATNSw~G~Y~~~P~g~~TFYgM~Yd~~ 400 (629)
T d1g9ga_ 321 FGYQNPFAAWVLSTDANFKPKSSNGASDWAKSLDRQLEFYQWLQSAEGAIAGGATNSWNGRYEAVPSGTSTFYGMGYVEN 400 (629)
T ss_dssp GGGCCHHHHHHHHHCGGGCCSSSSHHHHHHHHHHHHHHHHHHTBCSSSCBCCEEESSBTTTTBCCCTTCCEETTEEEESS
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55547899998605624687998507679999999999999984256551366446778866789999853245003677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 PVYhDPpSN~WfG~Q~WsmeRvAe~Yy~tGd~~Ak~ildKWv~W~~~~~~~~~~g~f~iPs~L~WsGqPDtWn~t~~~t~ 480 (629)
T d1g9ga_ 401 PVYADPGSNTWFGMQVWSMQRVAELYYKTGDARAKKLLDKWAKWINGEIKFNADGTFQIPSTIDWEGQPDTWNPTQGYTG 480 (629)
T ss_dssp CSCBTTBTTSBTHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSCEECTTSCEEEEEEEEEESCCCCCCTTTCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65458998774042201189999999971738899999999987752068789986755787612488887778898889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 N~~Lhv~V~~~~~DvGva~s~aktL~yYAa~s~d~~a~~~Ak~LLD~~w~~~~D~~Gvs~~E~r~DY~RFfd~~VYvP~g 560 (629)
T d1g9ga_ 481 NANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSKGISTVEQRGDYHRFLDQEVFVPAG 560 (629)
T ss_dssp CTTCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSEETTEECCEEECTTTTHHHHCBCCCCTT
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEECCCC
T ss_conf 98617999326864416999999999997206646799999999999998358777635776423356645784554898
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 561 wtG~mpnGd~I~~g~tF~~iRs~Yk~DP~w~~v~~~l~~g~~P~f~YHRFWaQ~diA~A~~~y~~Lf~~ 629 (629)
T d1g9ga_ 561 WTGKMPNGDVIKSGVKFIDIRSKYKQDPEWQTMVAALQAGQVPTQRLHRFWAQSEFAVANGVYAILFPD 629 (629)
T ss_dssp CCEECTTCCEECTTCBGGGGCGGGGGSTTHHHHHHHHHTTCCCEEECCBHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCCEEEECHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCC
T ss_conf 657699987358997043405444069957999999847999715764257888999987777754389
|
| >d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aconitase iron-sulfur domain superfamily: Aconitase iron-sulfur domain family: Aconitase iron-sulfur domain domain: Iron-responsive element binding protein 1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=47794.76 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~f~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lP~s~rillEn~lr~~~~~~v~~~~i~~~~~~~~~~~~~~ei~f~p~ 80 (629)
T d2b3ya2 1 SNPFAHLAEPLDPVQPGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKPA 80 (629)
T ss_dssp CCTTGGGEEESCTTSTTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECCS
T ss_pred CCCHHHHHHHCCCCCCCCEEECHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf 98457776310457887537337895515766588429999989887068875799999999723356898874460324
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 rv~lqD~tg~~a~~dlaamrda~~~~g~dp~~i~p~~p~~lviDHsv~~~~~~~~~~~~~n~~~e~~rn~er~~fl~w~~ 160 (629)
T d2b3ya2 81 RVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGS 160 (629)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEECCCCCCHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 03423255753999999879999970799010378986329977876761588802666330134430278888899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~pPg~GI~HQvnlE~la~~v~~~~~~~~pdtlVGtDSHT~~~GalG~lg~GVGg~Eae~amlg~~~~~~vPe 240 (629)
T d2b3ya2 161 QAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQ 240 (629)
T ss_dssp HHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCC
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHHCCCEEEECCC
T ss_conf 88634622135542566778887504653778858731499647886500032005468666999999837907995373
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 vvgv~L~G~L~~gVtakDliL~i~~~L~~~G~vgk~VEF~G~gi~~LS~~dRaTI~NMa~E~GAt~gifp~De~T~~YL~ 320 (629)
T d2b3ya2 241 VIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLV 320 (629)
T ss_dssp EEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHH
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH
T ss_conf 68999994059996650789888788540775518987406611106887865664200213756999750461466444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~tgR~~~~~~~ve~y~~a~~l~~~~~~~d~da~Y~~vieiDLs~veP~VAgP~~P~d~v~l~e~~~~~~~~l~~~~~~~~ 400 (629)
T d2b3ya2 321 QTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKG 400 (629)
T ss_dssp HTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTB
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHCEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 20134111114567777877641102246666764299986668024257899766615887667686664335543201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~l~~g~V~ia~IgSCTN~s~~dl~~AA~lLa~kaV~~Gl~v~p~Vk~~v~PGS~~V~~~ 480 (629)
T d2b3ya2 401 FQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYY 480 (629)
T ss_dssp CCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHH
T ss_conf 21133333333333203632234577477999966778881789999999840255339840553668885360332378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 le~~Gl~~~L~~aGf~i~~~GC~~CiGnsGpl~~~~~~~i~~gdl~~~~V~S~NRNFeGR~g~~~~~~yLaSP~lVaA~A 560 (629)
T d2b3ya2 481 LQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYA 560 (629)
T ss_dssp HHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHH
T ss_pred HHHCCCHHHHHHCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHH
T ss_conf 77677155333100589246430037887887740433104687157665162889886789998986989999999998
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 561 iaG~I~id~~~eplg~~~~G~~V~L~diwPs~~Ei~~~~~~~v~~~~f~~~y~~v~~g~~~W~~l~~p~ 629 (629)
T d2b3ya2 561 IAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPS 629 (629)
T ss_dssp HHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCC
T ss_pred HCEEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf 215455687768776699989773678797879999999854696666899887625781011588999
|
| >d2a3la1 c.1.9.1 (A:212-839) AMP deaminase (AMPD), catalytic domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: AMP deaminase (AMPD), catalytic domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=47713.51 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~kY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (628)
T d2a3la1 1 QPDPIAADILRKEPEQETFVRLNVPLEVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHY 80 (628)
T ss_dssp CCCTTTCCCCCCCCCSCCCCCCCCCCCCCCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------------CCCCCC
T ss_pred CCCCCHHHHHCCCCCHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99983466640583210448887379899889999999999999869975789877866443568999998778753357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~RL~~Le~kf~l~~~lN~~~E~ 160 (628)
T d2a3la1 81 PQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEF 160 (628)
T ss_dssp CCCCCCCCCCCBTTBCCCCCSSCCSSCSCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 89987648997075899960788755565999999999999999999847427889999999999999999984744566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~k~~~~rDfyn~~KVDlHvHlsg~m~~k~LLefIk~k~~~~pd~vv~~~~gk~~TL~evfe~~~l~~~dltvd~L~~~ 240 (628)
T d2a3la1 161 LAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVH 240 (628)
T ss_dssp HHGGGSCSCCTTTSCEEEEEEETTTCSCHHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCCC
T ss_pred HHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHCCC
T ss_conf 76314899863426604520561037698999999999776399846772599615499999854998345770343011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~f~rfD~Fn~kynp~g~~~Lr~~FLktdn~i~G~ylael~kevl~dle~~~vqy~ElR~S~yg~~~~ew~~lA~w~ 320 (628)
T d2a3la1 241 ADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWI 320 (628)
T ss_dssp SCSSCCCCCSSSHHHHCCSSCCHHHHHHSCSSSTTTTTTHHHHHHHHHHHHTTSSSEEEEEEEECCSSSSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 57104555332023346111689999987225653569999999999999998597699999666688807788877899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 v~~~l~s~~~rw~Iqv~rly~~~r~~g~~~sf~~~L~nIF~PLfeatl~p~~~p~L~~fL~~VvGfDlvgdEs~~e~~~~ 400 (628)
T d2a3la1 321 VNNDLYSENVVWLIQLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERRPT 400 (628)
T ss_dssp HTTTCCCSSEEEEEEEECCHHHHTTSSSCSSTHHHHHHHSSHHHHHHHCGGGSTTTHHHHTTEEEEEEESCTTSCCCCCC
T ss_pred HHCCCCCCCCCEEEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHCHHHHHHHCCEEEEEEECCCCCCCCCCC
T ss_conf 87076566765378875552577737843549999999888899986280237799997386689994565343433322
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~p~P~~w~~~~nPp~~Yy~YY~yANl~~LN~lR~~rg~~~~~lrpH~GE~~~~~~l~~alL~adrIgHGv~l~~~p~L 480 (628)
T d2a3la1 401 KHMPTPAQWTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDHLAATFLTCHSIAHGINLRKSPVL 480 (628)
T ss_dssp SSCCCTTTCCSSSCCCHHHHHHHHHHHHHHHHHHHTTTTCCCCEECCCCSSSSCTHHHHHHHHHCSSCSCCGGGGGCHHH
T ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEECCCCHHH
T ss_conf 24798332456779845687889988688899999864788733433457889888999987601545664672699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~l~~~~qI~le~cPlSN~~l~~~~~~hP~~~~~~~Gl~VsLsTDDPl~f~~t~epL~eEY~~aa~~~~Ls~~dl~elAr 560 (628)
T d2a3la1 481 QYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIAR 560 (628)
T ss_dssp HHHHHHHTCCEEECHHHHTTTTCCSTTCSHHHHHHTTCCEEECCBCHHHHCCSSSHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHCCCEEEECCCCHHHCCCCHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99998639549988774211126842390999997799599707996323788653899999999982999999999999
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 561 NSV~~S~f~~~~K~~wlG~~y~~~g~~gNd~~~tnvp~iR~~~R~etl~~E~~~l~~~~~~~~~~~~~ 628 (628)
T d2a3la1 561 NSVYQSGFSHALKSHWIGKDYYKRGPDGNDIHKTNVPHIRVEFRDTIWKEEMQQVYLGKAVISDEVVP 628 (628)
T ss_dssp HHHHHSCCCHHHHHHHSCTTTTBSSGGGCCHHHHCSCHHHHHHHHHHHHHHHHHHTTTCCCCCSBCCC
T ss_pred HHHHHHCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99998189979999871761431588767744167978999999999999999973013686235797
|
| >d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Trimethylamine N-oxide reductase species: Shewanella massilia [TaxId: 76854]
Probab=100.00 E-value=0 Score=47624.72 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~w~~~~~~~~~~~v~V~dG~vv~i~~~~~~~~~~~~~~~~~~~~y~pdRl~~PlkRvg~~~~~~~~~~~~RG~g~~~ 80 (627)
T d1tmoa2 1 NEDEWLTTGSHFGAFKMKRKNGVIAEVKPFDLDKYPTDMINGIRGMVYNPSRVRYPMVRLDFLLKGHKSNTHQRGDFRFV 80 (627)
T ss_dssp CCCCCEEEEETTEEEEEEEETTEEEEEEECTTCSSCCGGGGTHHHHHSCTTBCCSCEEEHHHHHHGGGSCGGGTTSCEEE
T ss_pred CCCCEECCCCCCCEEEEEEECCEEEEEECCCCCCCCCHHHHCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEE
T ss_conf 99856344456411799999999999678888998885560177852290131588186116655655565768789889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~ISWdEAld~ia~kl~~i~~~~G~~si~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 160 (627)
T d1tmoa2 81 RVTWDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLHSSTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYVLGST 160 (627)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHTCGGGEECCCCCCCCSCTTTCHHHHHHHHHHTTCCCBEEECCSSSTTHHHHHHHHTSSC
T ss_pred ECCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf 85599999999999999999859675998344213351566899999998517888646657832243300255422233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~g~~~~~~~d~~~~~~ii~~G~n~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~G~k~IvvDPr~t~taa~~Ad~wlpi 240 (627)
T d1tmoa2 161 EVYAQGTSWPLILEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYV 240 (627)
T ss_dssp CTTSCCCCHHHHHHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEECC
T ss_pred CCCCCCCCCHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCCCCEEEE
T ss_conf 34566778878850465588606512333024556665544057999999997189769996346342001135622530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 rPGTD~AL~lam~~~ii~e~l~D~~fv~~~t~gf~~~~~~~~~~~d~~~~tpe~aa~itGVpa~~I~~~A~~~a~~~~~~ 320 (627)
T d1tmoa2 241 NPQTDVTLMLAIAHEMISKKLYDDKFIQGYSLGFEEFVPYVMGTKDGVAKTPEWAAPICGVEAHVIRDLAKTLVKGRTQF 320 (627)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHHTTTTSCCCCHHHHHHHHTCCHHHHHHHHHHHHHSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 33451999999999999859962001210221278999987666541248987866754898788899999851136412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~g~g~~~~~~g~~~~~a~~~L~~l~G~ig~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (627)
T d1tmoa2 321 MMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGHHYSSIGVPSSGAAAPGAFPRNLDENQKPLFDSSDFKGASS 400 (627)
T ss_dssp EECSGGGSSTTTHHHHHHHHHHHHHHTCTTSTTCEEESCTTSTTTTSCCCCCCCCCCCCSSCCTTCCCSSCCCCCTTSCS
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHH
T ss_conf 46762433036627899999999998850789865678877677777654556777676556644575434100101010
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ik~l~~~~~Np~~~~p~~~~~~eal~~ldfvV~~D~~~t~Ta~~ADiVLP~ 480 (627)
T d1tmoa2 401 TIPVARWIDAILEPGKTIDANGSKVVYPDIKMMIFSGNNPWNHHQDRNRMKQAFHKLECVVTVDVNWTATCRFSDIVLPA 480 (627)
T ss_dssp EEEGGGHHHHHHSTTCEEECSSSEEECCCCCEEEEESCCHHHHSSCHHHHHHHHTTCSEEEEEESBCCHHHHTCSEEEEB
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCC
T ss_conf 25410014632355310445666442573358997447753455447777888736572686244677056522450456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~E~~d~~~~~~~~~~~~~~~~~~i~P~ge~k~d~eI~~~LA~rlG~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (627)
T d1tmoa2 481 CTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFEIFTRFAAVLGKEKEYTRNMGEMEWLETLYNECKAANAGKFEM 560 (627)
T ss_dssp CCGGGSCEEEEECTTTCCEEEEECCCSCCCTTCBCHHHHHHHHHHHTTCHHHHHTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 45100466103666764114664416689767977999999999983896647899887999999999998634687789
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 561 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~p~~~~f~TpSGKiE~ys~~l~~~G~~~l~~~P~~~ep~ 627 (627)
T d1tmoa2 561 PDFATFWKQGYVHFGDGEVWTRHADFRNDPEINPLGTPSGLIEIFSRKIDQFGYDDCKGHPTWMEKT 627 (627)
T ss_dssp CCHHHHHHHCEEECCCCCCCCTTHHHHHCTTTSCCSSSSSSEESSCHHHHTTCCTTSCSSCCCCCCS
T ss_pred CCHHHHHHCCCEECCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 8999998629588878865545244542755798989995299871899877798899998702969
|
| >d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Dimethylsulfoxide reductase (DMSO reductase) species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=0 Score=47237.96 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~c~~~~~~v~v~dG~vv~i~g~~~~p~~~g~~~~~~~~~y~pdRl~~PlkR~~~~~~~~~~~~g~RG~g~~~~ 80 (622)
T d1eu1a2 1 ANGEVMSGCHWGVFKARVENGRAVAFEPWDKDPAPSHQLPGVLDSIYSPTRIKYPMVRREFLEKGVNADRSTRGNGDFVR 80 (622)
T ss_dssp CCEEEEEEETTEEEEEEEETTEEEEEEECTTCSSCCTTHHHHHHTTTSTTBCCSCEEEHHHHHHGGGSCGGGTTSSCEEE
T ss_pred CCCCEEECCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHEECCHHCCCCEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99988852784258999999999998957999986622212087647900413674823375555555667677994798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 iSWdEAl~~iA~kl~~i~~~~Gp~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (622)
T d1eu1a2 81 VTWDEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLE 160 (622)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCGGGEECCCCCCCCCCSSCCHHHHHHHHHHHHTCCBEEESCSSSTTHHHHHHHHTSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCEECC
T ss_conf 35999999999999999998597579971246776488889999999999863877578988552233104553200012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~d~~~~d~il~~G~N~~~t~~~~~~~~~~~~~~~~~~a~~~GakivvvDPr~t~ta~~~ad~~l~irPGTD 240 (622)
T d1eu1a2 161 VYEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVICINPVRTETADYFGADVVSPRPQTD 240 (622)
T ss_dssp TTSCCSCHHHHHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEECCCTTCH
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHCCCCCCCH
T ss_conf 56778887105665413433289877647511135317899999999867995996278766530011000022102211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~Al~la~~~~ii~~~l~D~~fv~~~t~g~~~~~~~~~~~~d~~p~t~e~aa~itGV~a~~I~~lA~~~a~~~~~~~~~~G 320 (622)
T d1eu1a2 241 VALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAAYLTGESDGTPKTAEWAAEICGLPAEQIRELARSFVAGRTMLAAGWS 320 (622)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHEECHHHHHHHHTTTTTSCCCCHHHHHHHHCSCHHHHHHHHHHHHSSCEEEEECSG
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 67878999999984996620111256557889988643123460458899988797999999999997408741133102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~g~~~~rai~~L~~l~G~ig~~Ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 400 (622)
T d1eu1a2 321 IQRMHHGEQAHWMLVTLASMIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDGGKAVEGAAWLSESGATSIPCARVV 400 (622)
T ss_dssp GGSSTTTHHHHHHHHHHHHHHTCTTSTTCEEESCTTSTTTTSCCCSCCCCCCCCCCC---CC-------CCSEEEGGGHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf 46566635889999999996099211797766777777777864346667887855543320333021244320133321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~g~~~~~~~~~~~~~~ik~~~~~~~np~~~~p~~~~~~~al~~ldf~V~~D~~~teTa~~ADvVLP~~~~~E~~~ 480 (622)
T d1eu1a2 401 DMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQWTATARHADIVLPATTSYERND 480 (622)
T ss_dssp HHHHCTTCEEEETTEEEECCCCCEEEEESCCHHHHSSCHHHHHHHGGGCSEEEEEESBCCHHHHTCSEEEEBCCGGGSCE
T ss_pred HHHCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 22118650455544431457546777645873002445888999986304453444554688899887456775134366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~v~~~~~~v~P~gear~d~~I~~~LA~rlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 560 (622)
T d1eu1a2 481 IESVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEFTEGRDEMGWISSFYEAAVKQAEFKNVAMPSFEDFW 560 (622)
T ss_dssp EEEECTTTCCEEEEECCCSCCCTTCBCHHHHHHHHHHHTTCHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 20334453146754000669974676799999999998289766899764999999999988755543588889999998
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------~ 1717 (1815)
.
T Consensus 561 ~~g~~~~p~~~~~~~~~~~~~~~~~~~~~f~TpSGK~E~ys~~l~~~G~~~~p~~P~~~eP~ 622 (622)
T d1eu1a2 561 SEGIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEIYSKNIEKMGYDDCPAHPTWMEPA 622 (622)
T ss_dssp HHCEEECCCSGGGGCCTTHHHHHCTTTSCCSSTTSSEESSCHHHHHHCCTTSCSSCCCCCCS
T ss_pred HCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 56988831699865210776742667798979995389733899866999899999999989
|
| >d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Molybdenum cofactor-binding domain superfamily: Molybdenum cofactor-binding domain family: Molybdenum cofactor-binding domain domain: Quinoline 2-oxidoreductase large subunit QorL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=47177.53 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~gdv~~~fa~a~~vve~~y~~~~~~h~~mEp~~~~A~~d~~~g~l~v~~stQ~p~~~r~~iA~~Lglp~~~Vr 80 (621)
T d1t3qb2 1 VSRTSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIE 80 (621)
T ss_dssp EEEEEEEECCCHHHHHHSSEEEEEEEEECBBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred CCCCCCCCCCHHHHHHCCCEEEEEEEEECCEEEECCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCHHHEE
T ss_conf 97643236268999830998999999989880237778718999978999899997994999999999999789889979
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 V~~~~vGGgFG~K~~~~~~~~~aalaA~~~grPVkl~~sR~E~~~~~~~r~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga 160 (621)
T d1t3qb2 81 VRVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGA 160 (621)
T ss_dssp EECCBCSCCTTTTSSCCHHHHHHHHHHHHHTSCEEEECCHHHHHHHSCBBCCEEEEEEEEECTTCCEEEEEEEEEEECCS
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCCCCCCHHHHCCCCCCCCCEEHHHEEEEECCCC
T ss_conf 99183781787677789999999999998499999996069972558999740100102413567510221044102433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 y~~~~~~~~~~~~~~~~~~~g~Y~ip~~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E~~mD~lA~~Lg~DP~e~R~~N~ 240 (621)
T d1t3qb2 161 YNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNV 240 (621)
T ss_dssp SCCTTTCGGGTHHHHHHTTTTTBCCSEEEEEEEEECCSSSCBCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHTTB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 47777663101133332446652102688754442145566875467774311101579999999985898777777611
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~g~~~~~~~~~~g~~~~~~~~~~~~~~~ 320 (621)
T d1t3qb2 241 VMPEDFPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNEVTGTGTRTLSFLGTPTTTHD 320 (621)
T ss_dssp CCGGGCSEECTTSCEECSCCHHHHHHHHHHHHCHHHHHHHHHHHHTTTEEEEEEEEEEEEEESCCHHHHHHTTCCCCCCB
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEECCCCCCCCCCCCCCCCCE
T ss_conf 67544543222101124563677666677653003433307988633870432210132320012333331357777721
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~a~v~i~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~Lgip~d~V~v~~~dT~~~~~~gt~~Sr~t~~~g~av~~Aa~~~~ 400 (621)
T d1t3qb2 321 SATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVR 400 (621)
T ss_dssp EEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEEECSBTTSCCBCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHH
T ss_conf 69999876642664114443221110157788988615871106444158888888887576875122102321135689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~l~~~aa~~l~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ae 480 (621)
T d1t3qb2 401 ERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAI 480 (621)
T ss_dssp HHHHHHHHHHHTSCGGGEEEETTEEEETTEEEEEEEHHHHHHHHHHCGGGCCTTCCCCCEEEEECCCSSCEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCHHHEEEECCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 99987666540588668598588799867833466578888777634665457766432222346888631002578999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 VeVD~~TG~v~V~~~~~~~D~G~~iNP~~v~gQi~Gg~~~GiG~aL~Ee~~~d~~G~~~~~~~~~Y~ipt~~d~P~i~v~ 560 (621)
T d1t3qb2 481 VEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPDIRIR 560 (621)
T ss_dssp EEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCBCBCTTSCBCCCSTTTSCCCCTTTCCCEEEE
T ss_pred EEEECCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHCCCCCCCCCCCEEEE
T ss_conf 98413443117845779981764359999999999899999999983881799998788899644769872227887999
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------~ 1717 (1815)
+
T Consensus 561 ~ve~~~~~~p~GaKGvGE~~~~~~~~AI~nAi~~A~g~~~~r~~~lP~tpe~v~~al~~~~ 621 (621)
T d1t3qb2 561 HLETPSPLVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVVIETVPITPERIFRSIQERP 621 (621)
T ss_dssp ECCCCCTTSGGGBCCCTTHHHHHHHHHHHHHHHHHHGGGTCCCCEESCCHHHHHHHHHTCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 9726999999887235575402379999999999757768831688989999999974387
|
| >d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prokaryotic type I DNA topoisomerase superfamily: Prokaryotic type I DNA topoisomerase family: Prokaryotic type I DNA topoisomerase domain: DNA topoisomerase III species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=47091.90 Aligned_cols=1 Identities=0% Similarity=-0.694 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 MkLiIaEkPs~Ak~Ia~~Lg~~~~~~~g~~~~g~~~~Vt~~~GHl~~l~~p~~~~~~~~~w~~~~lp~~p~~~~~~~~~~ 80 (620)
T d1i7da_ 1 MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPS 80 (620)
T ss_dssp CEEEEESSHHHHHHHHTTSCSCCEEETTEEEETTTEEEEECSSCSEEECCHHHHCGGGGSCCSTTCSCCCSSCCEEECGG
T ss_pred CEEEEECCHHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 96999777799999999818766368874451897299995776757897000330004776023887875434655732
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~k~~~~lk~l~k~ad~iilAtD~DREGE~Ia~~i~~~~~~~~~~~~~v~R~~f~~iT~~aI~~A~~n~~~~~~~~~l~~ 160 (620)
T d1i7da_ 81 VTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV 160 (620)
T ss_dssp GHHHHHHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCHHHHHTCEECCCSCCSHHHHHHHHTTCEEGGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 78999999999962998998579980433999999999560113677459999631769999999984477332112788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 a~~aR~~~D~liG~~~Sr~~t~~~~~~~~~~~lS~GRVQtPtL~lIveRe~eI~~F~p~~y~~i~~~~~~~~~~~~~~~~ 240 (620)
T d1i7da_ 161 SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIW 240 (620)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCCCCCTTHHHHHHHHHHHHHHHHTCCCCEEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHH
T ss_conf 99876787763374242999998764378764342432451346689889988620444133233576244311245443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~pP~Pf~ts~LQ~~As~~lg~s~~~tm~iAQ~LY 320 (620)
T d1i7da_ 241 QPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLY 320 (620)
T ss_dssp CCCGGGTTTBCTTCCBCCHHHHHHHHHHHSSCEEECCEEEEEEEEECCCCSBCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 11001353101455576899999999874368718987413431037875524699999865431876889999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 e~~glITYpRTDS~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aH~aI~Pt~~~~~~~l~~~e~ 400 (620)
T d1i7da_ 321 ETHKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEA 400 (620)
T ss_dssp HTSCCBSCSSCCCCCBCGGGGGGHHHHHHHHHHHSTTTCCCTTCCTTCCCTTBCGGGCCSSCCBCBCSCCSCCCCCHHHH
T ss_pred HHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHH
T ss_conf 74583120467655685899999999998752134101432123655332124776667754455541221257987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 klY~LI~~r~las~~~~a~~~~t~~~~~~~~~~F~~~g~~i~~~Gw~~v~~~~~~~~~~~~~~lp~l~~g~~~~~~~~~~ 480 (620)
T d1i7da_ 401 KVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDELLCEKGEV 480 (620)
T ss_dssp HHHHHHHHHHHHTTSCCEEEEEEEEEECSTTCCEEECEEEEEECGGGGGSCTTGGGTTCEECCCCCCCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCEECCCCCCC
T ss_conf 99999999998861860420115899984133211146433447600110201342010102021024677400023443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~e~~T~PP~ryTEasLi~~Me~~~k~~~d~~l~~~l~~~~GIGtpaT~a~iI~~L~~R~Yv~~~~k~l~pT~~G~~l~~~ 560 (620)
T d1i7da_ 481 VERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHS 560 (620)
T ss_dssp EEEECCCCCCEEHHHHHHHHHTGGGGCCCHHHHHHHHHTTSSSCTTTHHHHHHHHHHTTSEEESSSEEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHH
T ss_conf 26527998998879999999863203342889976312688886266999999997578699409888033789999999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
+
T Consensus 561 l~~~~~~~~~Ta~~E~~Ld~I~~G~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~cP 620 (620)
T d1i7da_ 561 LPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAP 620 (620)
T ss_dssp SCHHHHSTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTSCSGGGTTCCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCC
T ss_conf 998647875899999999999859988999999999999999999983523330599998
|
| >d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1 [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Viral glycoprotein ectodomain-like superfamily: Viral glycoprotein ectodomain-like family: Glycoprotein B-like domain: Glycoprotein B species: Human herpesvirus 1 [TaxId: 10298]
Probab=100.00 E-value=0 Score=46721.32 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~frVCs~s~g~dlvRF~~~~~Cp~~~~~~~~~EGI~lVyK~NIvPY~FkV~~Y~K~vt~~t~y~g~~~~~it~~~~~r~ 80 (615)
T d2guma1 1 ANFYVCPPPTGATVVQFEQPRRCPTRPEGQNYTEGIAVVFKENIAPYKFKATMYYKDVTVSQVWFGHRYSQFMGIFEDRA 80 (615)
T ss_dssp CCEEECCCCCTTSEEEECCCCCCCCCCCCCCCBCEEEEEEEECCSCEEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEEEEEEECCEEEEEECCCEEEEE
T ss_conf 96268079878568983899879899988844415899990566655878899999999999987588888517464770
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 pvp~~Ei~~~id~~~~C~ss~~~~~n~~~~~aydrD~~n~tv~L~P~~~~t~~~rry~Tt~~~y~~~~~~w~Yrt~TtVN 160 (615)
T d2guma1 81 PVPFEEVIDKINAKGVCRSTAKYVRNNLETTAFHRDDHETDMELKPANAATRTSRGWHTTDLKYNPSRVEAFHRYGTTVN 160 (615)
T ss_dssp ECCHHHHHTTHHHHSEEESEEEEESSSSEEEEEGGGCCCCEEECEECCCCTTCCCEEESCCSCCCCCCCTTSEEEEEEEE
T ss_pred CCCHHHHHHHCCCCCEECCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEECEEEEE
T ss_conf 58779988644566646022589988889999936898507986876789987036895574201687555785605552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 CiV~d~~ARS~yPYd~Fv~atGD~VemSPFy~~~~g~~~e~~~e~~~~f~~~~nY~~~D~~~~~~~~~~~~R~Fl~~~~~ 240 (615)
T d2guma1 161 CIVEEVDARSVYPYDEFVLATGDFVYMSPFYGYREGSHTEHTTYAADRFKQVDGFYARDLTTKARATAPTTRNLLTTPKF 240 (615)
T ss_dssp EEEEEEEEEECTTCSCEEETTSCEECBCTTCCSSTTGGGSCBCSCGGGEEEEEEECCCCC-------CCEEEEEEECSSC
T ss_pred EEEEEEEECCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCEEEEEECCCE
T ss_conf 89999895258981005644788799888546899987654567876279982568998567776788831356765976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 tvsW~~~~k~~s~C~l~~Wk~~~~aIRte~~~SyHF~a~~lTATF~t~~te~~~~~~~~~~Cv~~~a~~~I~~if~~kyN 320 (615)
T d2guma1 241 TVAWDWVPKRPSVCTMTKWQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFARRYN 320 (615)
T ss_dssp EEEEECCCSTTTCCSEEEEEEESCEEEEEETTEEEEEETTTTEEEEEESSCCCGGGBTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 89887425776622341200016888751178168997672478874884146456632103668999999999976530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~THv~~G~~qyY~T~GGliv~wQPl~~~~L~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~si~~AqLQFaY 400 (615)
T d2guma1 321 ATHIKVGQPQYYQANGGFLIAYQPLLSNTLAELYVREHLREQSRKPPNPTPPPPGASANASVERIKTTSSIEFARLQFTY 400 (615)
T ss_dssp TTBCCCSSCEEEEETTTEEEEEEECCBCC--------------------------------CBCCCCCSCCHHHHHHHHH
T ss_pred CCEECCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHH
T ss_conf 00233786689991596899993178347999987654320356788887899875555555640101568999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 D~Lr~~IN~~L~~ia~AWC~~Q~R~~~mW~ElsKINPs~v~SaiygrpVsAr~~GDvisvs~Ci~v~q~sV~i~~smrv~ 480 (615)
T d2guma1 401 NHIQRHVNDMLGRVAIAWCELQNHELTLWNEARKLNPNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQNSMRIS 480 (615)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCEEEEECBSSEEEEECEEECGGGEEECSBCBCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHCCEEEEEEEEEECCCCEEEEECCCCC
T ss_conf 99999999999999999998766789999986368878889998399634324237787520357678727998224468
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~CYsRP~V~F~f~N~s~~~~GQLG~~NEill~~~~~E~C~~~~~~yF~~g~~~~~y~dY~~~~~~~~~~I~~~~Tf 560 (615)
T d2guma1 481 SRPGACYSRPLVSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYSHQLSRADITTVSTF 560 (615)
T ss_dssp TSTTEEESSCEEEECSSTTSCCEEEEECSTTEEESCCCCEEECCSSCEEEEEETTEEEEEETTEEEEEEEGGGSEEECCC
T ss_pred CCCCCEECCCCEEEEEECCCCEEEECCCCCCEEECCCCCEECCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCHHHHHH
T ss_conf 99994744885789984588406742788864642688412467997379998985899984368986242214042336
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------~ 1717 (1815)
.
T Consensus 561 i~Lnlt~len~dF~~lelYs~~E~r~s~v~D~e~i~Re~n~~~~r~~did~~i~~ 615 (615)
T d2guma1 561 IDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLHDLRFADIDTVIHA 615 (615)
T ss_dssp CCCCCCCCCCCCCCCCCSSCHHHHHHHSSSCHHHHHHHHTTHHHHHSCSSCCCCC
T ss_pred HHCCCCEECCCCCEEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4616620036562389986588886638868899988877888766405655329
|
| >d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prismane protein-like superfamily: Prismane protein-like family: Carbon monoxide dehydrogenase domain: Ni-containing carbon monoxide dehydrogenase species: Rhodospirillum rubrum [TaxId: 1085]
Probab=100.00 E-value=0 Score=46319.34 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 et~~dR~~~q~p~C~fg~~g~cC~~C~~GPCrit~~~~~~~~GvCG~~~~t~~ar~~L~~~~~G~Aah~~har~~~~~l~ 80 (610)
T d1jqka_ 1 ETAWHRYEKQQPQCGFGSAGLCCRICLKGPCRIDPFGEGPKYGVCGADRDTIVARHLVRMIAAGTAAHSEHGRHIALAMQ 80 (610)
T ss_dssp CCHHHHHHHHCSCCHHHHHTCEECSSTTCCEECCSSSSSCCBCTTCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96024567518989988778512457999863788889998611188999999999999999989999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~g~~~~~~i~~~~kl~~~a~~~gi~~e~~~~~e~a~~~a~~~l~d~~~~~~~~~~~~~~~~~~~k~~~~~~~lg~~~ 160 (610)
T d1jqka_ 81 HISQGELHDYSIRDEAKLYAIAKTLGVATEGRGLLAIVGDLAAITLGDFQNQDYDKPCAWLAASLTPRRVKRLGDLGLLP 160 (610)
T ss_dssp HHTTTCCTTCCCTTHHHHHHHHHHTTCCCTTTCHHHHHHHHHHHHHHTTTCCCTTSCCHHHHHHSCHHHHHHHHHHTCSC
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 99708888876563999999999749986676789999999999888744566552245777521887899999837774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~ei~~~l~~t~~g~d~d~~~l~~~aL~~G~~~~~~m~l~d~~~~~~fG~P~p~~v~~~lGvl~~~~~nIlV~GH~p 240 (610)
T d1jqka_ 161 HNIDASVAQTMSRTHVGCDADPTNLILGGLRVAMADLDGSMLATELSDALFGTPQPVVSAANLGVMKRGAVNIAVNGHNP 240 (610)
T ss_dssp SCHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEESSCCCCTTEEEEEEESSCH
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEECCCH
T ss_conf 31689999999998258999999999999998765578999999988874599986277146654468886799978970
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~l~~~i~~~~~~~~~~~~~~~~a~GInvyG~cCT~~Eml~~hg~p~~gn~~~~e~~~~tG~~d~iv~d~nCi~p~l~~~a 320 (610)
T d1jqka_ 241 MLSDIICDVAADLRDEAIAAGAAEGINIIGICCTGHEVMMRHGVPLATNYLSQELPILTGALEAMVVDVQCIMPSLPRIA 320 (610)
T ss_dssp HHHHHHHHHHHHTTTHHHHTTCTTEEEEEEEHHHHHHHHHHSCCCEEECSTTTTHHHHTTCCCEEEECSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
T ss_conf 37899998766699999986378972899762557887661487212468998899973899729985777899976788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~y~~rlitT~~~~~~pG~~hi~~d~~~~~~~a~~iI~~Aie~~~~r~~~~~~ip~~~~~~~~GFs~e~vl~~~gg~~~~ 400 (610)
T d1jqka_ 321 ECFHTQIITTDKHNKISGATHVPFDEHKAVETAKTIIRMAIAAFGRRDPNRVAIPAFKQKSIVGFSAEAVVAALAKVNAD 400 (610)
T ss_dssp HTSSCEEEECCTTCCCTTSEECCCCGGGHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCEEEEECCCHHHHHHHHHTTCSS
T ss_pred HHHCCCEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCC
T ss_conf 87389779736546889986447886433778999999999732446887766687765168506899999981687643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~lid~Ik~G~Irgvv~i~GCd~~~~~~d~~~~e~akel~k~D~lVLt~GC~~~~~~~~gl~~~~a~~~~~g~gl~~ 480 (610)
T d1jqka_ 401 DPLKPLVDNVVNGNIQGIVLFVGCNTTKVQQDSAYVDLAKSLAKRNVLVLATGCAAGAFAKAGLMTSEATTQYAGEGLKG 480 (610)
T ss_dssp CTHHHHHHHHHHTSSCEEEEECCCCCTTSCTTHHHHHHHHHHHHTTEEEEEEHHHHHHHHHHTCSSHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCHHHHHHHCCHHHHH
T ss_conf 33078999996488872899966999998763089999998610898998351778787745788824554430222678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 v~~~~g~~~g~~~gIP~vL~~GqC~D~~~~~~ia~~LA~~~g~~vn~LPl~~~a~~w~eQKAvai~l~~l~lGI~~~lGp 560 (610)
T d1jqka_ 481 VLSAIGTAAGLGGPLPLVMHMGSCVDNSRAVALATALANKLGVDLSDLPLVASAPECMSEKALAIGSWAVTIGLPTHVGS 560 (610)
T ss_dssp HHHHHHHHTTSSSCCCSEEEEESSTTHHHHHHHHHHHHHHTTCCTTTSSEEEEETTCCSHHHHHHHHHHHHHTCEEEESS
T ss_pred HHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 98740544455579997643224560799999999999983999444750311535788999999999998299567899
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1717 -------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------~ 1717 (1815)
=
T Consensus 561 ~~p~~gSp~v~~~L~e~~~~~~G~~~~ve~Dp~~~a~~~~~~i~~kr~~L 610 (610)
T d1jqka_ 561 VPPVIGSQIVTKLVTETAKDLVGGYFIVDTDPKSAGDKLYAAIQERRAGL 610 (610)
T ss_dssp CCTTTTCHHHHHHHHTHHHHHTSCEEEECSCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99756687999999976776417579955799999999999999998449
|
| >d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Angiotensin converting enzyme, ACE
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=45402.14 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~ea~~fl~~~~~~~~~~~~~~s~A~w~y~tn~tdet~~~~~e~~~~~a~~~~e~~~~~~~f~~~~~~~~~~kr~l~~l~~ 80 (598)
T d1j36a_ 1 IQAKEYLENLNKELAKRTNVETEAAWAYRSAITDENEKKKNEISAELAKFMKEVASDTTKFQWRSYQSEDLKRQFKALTK 80 (598)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHTGGGSSCGGGCSSTTHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 93999999999999999788784646975259889999999999999999999999998453224799999999999875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~l~~~~~~el~~l~~~~~~l~s~a~v~~~~~~~~~~l~l~~~~~~i~~~srd~~el~~~w~~~~~~~~~~~~~~~~ 160 (598)
T d1j36a_ 81 LGYAALPEDDYAELLDTLSAMESNFAKVKVCDYKDSTKCDLALDPEIEEVISKSRDHEELAYYWREFYDKAGTAVRSQFE 160 (598)
T ss_dssp CSGGGSCHHHHHHHHHHHHHHHHHHHTCEECBTTBTTTCCEETTTHHHHHHHHCCCHHHHHHHHHHHHHHHTGGGHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36668998899999999999999862655305788765501045367776541578999999999999984344466699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~lv~lrn~~A~~lGf~n~~e~~r~~y~~~~~~~~~e~l~~~v~p~~~~l~~~~r~~l~~~yg~~~~~~~~~i~a~llg~~ 240 (598)
T d1j36a_ 161 RYVELNTKAAKLNNFTSGAEAWLDEYEDDTFEQQLEDIFADIRPLYQQIHGYVRFRLRKHYGDAVVSETGPIPMHLLGNM 240 (598)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHTTCCTTHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCTTTSCTTSCEETTSSSST
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCH
T ss_conf 99999999999849775888876048888899999999999999999999999999999852421685442115552224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~w~~~~~~~~p~~~~~~~dv~~~l~~~~~~~~~m~~~a~~ff~sl~~~~l~d~~w~~s~~~~~~~~k~~~~~a~a~~ 320 (598)
T d1j36a_ 241 WAQQWSEIADIVSPFPEKPLVDVSAEMEKQAYTPLKMFQMGDDFFTSMNLTKLPQDFWDKSIIEKPTDGRDLVCHASAWD 320 (598)
T ss_dssp TCSCCGGGHHHHCSCTTSCCCCTHHHHHHTTCCHHHHHHHHHHHHHTTTCCCCCHHHHHHCBCSCCSSSCCCCCSCEEEE
T ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEC
T ss_conf 42363112542467767889898999998276599999999999998363013457775410045655789887861426
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~p~I~~n~~~t~~dv~Tl~HE~GH~~h~~~~~~qp~~~~~~~~~~~~~~~~e~~sl~~~~~~~l~~~~l~~~~~~ 400 (598)
T d1j36a_ 321 FYLIDDVRIKQCTRVTQDQLFTVHHELGHIQYFLQYQHQPFVYRTGANPGFHEAVGDVLSLSVSTPKHLEKIGLLKDYVR 400 (598)
T ss_dssp CSSSSCEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTSCGGGCSCSHHHHHHHHHHHHHHHHHSHHHHHHTTSSSSCCC
T ss_pred CCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC
T ss_conf 77788772243787868999999999999999999716982012678841588999999986406899964220003467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~e~~~~~l~~~~l~~i~flp~~~~~d~~~~~v~~~~~~~~~~n~~w~~l~~~y~g~~~p~~~~~~~fd~~~~~Hi~~~~ 480 (598)
T d1j36a_ 401 DDEARINQLFLTALDKIVFLPFAFTMDKYRWSLFRGEVDKANWNCAFWKLRDEYSGIEPPVVRSEKDFDAPAKYHISADV 480 (598)
T ss_dssp CSTTTHHHHHHHHTTTTTHHHHHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHCEECSSCEETTCCCGGGSHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEECCCC
T ss_conf 63656999999998888755699999999999866899989999999999997368789988894562646453247996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~Y~~Y~~a~vl~fq~~~~~c~~~~~~~~~~~~~~l~~cd~~~s~~aG~~~~~~L~~G~S~~~~e~~~~~~G~~~~s~~al 560 (598)
T d1j36a_ 481 EYLRYLVSFIIQFQFYKSACIKAGQYDPDNVELPLDNCDIYGSARAGAAFHNMLSMGASKPWPDALEAFNGERIMSGKAI 560 (598)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSCCSSCTTSCGGGCCCTTCHHHHHHHHHHHTTTTSSCHHHHHHHHHSCCCCCCTTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHH
T ss_conf 48999999999999999999982334543345763004653779999999999808699998999999719988984899
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000235 1717 -------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------~ 1717 (1815)
+
T Consensus 561 l~yf~pl~~wl~~~n~~~~~~~gw~~~~~~~~~~~~~~ 598 (598)
T d1j36a_ 561 AEYFEPLRVWLEAENIKNNVHIGWITSNKCVSSHHHHH 598 (598)
T ss_dssp HHHSHHHHHHHHHHHHHTTCCCSCCCCCCEESCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
T ss_conf 99999999999998886698789888766602024579
|
| >d1vlba4 d.133.1.1 (A:311-907) Aldehyde oxidoreductase {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Molybdenum cofactor-binding domain superfamily: Molybdenum cofactor-binding domain family: Molybdenum cofactor-binding domain domain: Aldehyde oxidoreductase species: Desulfovibrio gigas [TaxId: 879]
Probab=100.00 E-value=0 Score=45323.89 Aligned_cols=1 Identities=100% Similarity=0.004 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~A~~~dA~~ihp~~~n~~~~~~~~~g~d~~~afa~A~~vve~~y~~~~~~h~~mEp~~~vA~~~~~g~l~v~~~tQ 80 (597)
T d1vlba4 1 MSGPAAAAEDAIEIHPGTPNVYFEQPIVKGEDTGPIFASADVTVEGDFYVGRQPHMPIEPDVAFAYMGDDGKCYIHSKSI 80 (597)
T ss_dssp CSHHHHHSTTCCCSSTTSCSEEEEEEEEESSCHHHHHHHCSEEEEEEEEECCCCCCCSSCCEEEEEECTTSCEEEEESCS
T ss_pred CCHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEEEEEEEEECCEEEEECCCCEEEEEECCCCEEEEEECCC
T ss_conf 98457378998200699897667874035667899974399899999998989781053777999989998399997983
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~p~~~r~~iA~~Lgl~~~~VrVi~~~vGGgFG~K~~~~~~~~aa~aA~~~grPVk~~~sR~e~~~~~~~r~~~~~~~~~g 160 (597)
T d1vlba4 81 GVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSPTSEALVAVAAMATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFA 160 (597)
T ss_dssp CHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTGGGSCSSHHHHHHHHHHHSSCEEEECCHHHHHHSSCBCCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCHHHHCCCCCCCCCEEEEEEEE
T ss_conf 88999999999969987998999488875698878635999999999976998412113233203456665479875665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~~~~g~Y~ip~~~~~~~~v~TN~~p~ga~RG~G~~~~~~a~E~~~D~ 240 (597)
T d1vlba4 161 AKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQFIGAGYNIPNIRGLGRTVATNHVWGSAFRGYGAPQSMFASECLMDM 240 (597)
T ss_dssp ECTTCCEEEEEEEEEEECTTCCTTHHHHHHHHHHHTTTTBCCCEEEEEEEEECCSSCCBCCCTTTTHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHH
T ss_conf 22324521125665203566432221002321000245443313789876553146776766573222220111223578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~A~~lg~DP~e~R~~N~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~g~~~~~~~~g~~~~~ 320 (597)
T d1vlba4 241 LAEKLGMDPLELRYKNAYRPGDTNPTGQEPEVFSLPDMIDQLRPKYQAALEKAQKESTATHKKGVGISIGVYGSGLDGPD 320 (597)
T ss_dssp HHHHHTCCHHHHHHHHBCCTTCCCTTSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEEEEEEEESSSTTTC
T ss_pred HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89871962146899735687764567754455656777877777665433334444214544210122111111232333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~a~v~l~~dG~v~v~~g~~~~GqG~~T~~~qi~ae~l~~lGi~~e~V~v~~~DT~~~p~~~gt~gSr~t~~~g~Av~~ 400 (597)
T d1vlba4 321 ASEAWAELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTATTPNSGPSGGSRQQVMTGNAIRV 400 (597)
T ss_dssp EEEEEEEECTTSCEEEECCCCCSSSCHHHHHHHHHHHHHGGGTCCGGGEEECCCBTTTSCCCCCSCTTCHHHHHHHHHHH
T ss_pred CCHHEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCEECCCCCCCCCCCCCCCCCCCEEEHHHHHHH
T ss_conf 21000232012331001454455532100122120233330386878853025777678998765551400011047899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 Aa~~l~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~ 480 (597)
T d1vlba4 401 ACENLLKACEKPGGGYYTYDELKAADKPTKITGNWTASGATHCDAVTGLGKPFVVYMYGVFMAEVTVDVATGQTTVDGMT 480 (597)
T ss_dssp HHHHHHHHHBCTTSSBCCHHHHHHTTCCCEEEEEEECTTCBCCCTTTCCSBCCSCEEEEEEEEEEEEETTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEE
T ss_conf 99999999975414421201000012220011021026644332002568875424214899999961565653430599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~v~D~G~viNP~~v~gQi~Gg~~~GiG~aL~E~~~~~~~~~~~~~y~~p~~~d~P~~~~v~~~e~p~~~~p~GakG~GE~ 560 (597)
T d1vlba4 481 LMADLGSLCNQLATDGQIYGGLAQGIGLALSEDFEDIKKHATLVGAGFPFIKQIPDKLDIVYVNHPRPDGPFGASGVGEL 560 (597)
T ss_dssp EEEECSSCSCHHHHHHHHHHHHHHHHHHHHTCCCCSTTTSSSTTTTTCCCGGGSCSCEEEEECCCCCTTSGGGCCCCTTG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99867866698899999985899999999838000467888846689987666898747999657999999887524165
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000235 1717 ------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------~ 1717 (1815)
.
T Consensus 561 ~~~~~~~AI~nAi~~A~G~r~~~lP~tpe~v~~al~a 597 (597)
T d1vlba4 561 PLTSPHAAIINAIKSATGVRIYRLPAYPEKVLEALKA 597 (597)
T ss_dssp GGSSHHHHHHHHHHHHHSCCCCBSCCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
T ss_conf 2020899999999982798568789899999998569
|
| >d2ajfa1 d.92.1.5 (A:19-615) Angiotensin converting enzyme 2, ACE2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Angiotensin converting enzyme 2, ACE2
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=45320.89 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~e~~a~~fl~~~~~~~~~l~~~~~~A~~~~~tn~tde~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~ 80 (597)
T d2ajfa1 1 STIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQ 80 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 95299999999999999999978988999999816999999999999999999999999999855202368999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~l~~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~r~~~~~~~~~~~~~~~~~ 160 (597)
T d2ajfa1 81 ALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRP 160 (597)
T ss_dssp HHTCCGGGGSCTTHHHHHHHHHHHHHHHHHHCEEECSSCTTCEEETTTTHHHHHHHCCCHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98860755799999999999999999886413775179975211036303357664557888999999998877676667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~l~~lrn~~A~~lGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~p~~~~l~~~~~~~l~~~~~~~~~~ 240 (597)
T d2ajfa1 161 LYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHLHAYVRAKLMNAYPSYISP 240 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHGGGCBCSSTTSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
T ss_conf 99999999999999702214999878776544332024888999999999999866789999999999986621311154
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~llg~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~id~~~~~ 320 (597)
T d2ajfa1 241 IGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGN 320 (597)
T ss_dssp TBCEEGGGSSSSSSSCCGGGHHHHCTTTTSCCCCCHHHHGGGTCCHHHHHHHHHHHHHTTTCCCCCHHHHHHCBCSCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
T ss_conf 21778887415666666432764578888887778999998653499999989999999763421244401202005778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 gK~~ga~~s~~~~~~~~~~l~n~~~~~~~~~tl~HE~Gh~~h~~ls~~~~p~~~~~~~~~~~~~a~~~s~~l~~~~~~~L 400 (597)
T d2ajfa1 321 VQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGFHEAVGEIMSLSAATPKHL 400 (597)
T ss_dssp SSCCCCCCEEEEEETTEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTSSCGGGCSCSSTTHHHHHHHHHHHHHTSHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99776132765245676044416786188999999999999999997269744327898269998888999983079999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 480 (597)
T d2ajfa1 401 KSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEMKREIVGVVEPVPHDETYC 480 (597)
T ss_dssp HHTTSSCTTCCCCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTCSCGGGHHHHHHHHHHHTTCEECSSCCCTTCC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 98627544556787999999999999999999999999999999867999878998999987644057789998874434
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~Hi~~~~yYy~Y~~a~vla~q~~~~~~~~~~~~~~l~~c~~~~~~~ag~~~~~~L~~G~S~~~~e~l~~~~G~~~ 560 (597)
T d2ajfa1 481 DPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRLGKSEPWTLALENVVGAKN 560 (597)
T ss_dssp GGGGSHHHHTTCCCTHHHHHHHHHHHHHHHHHHHTTCCSCGGGCCCTTCHHHHHHHHHHHTTGGGSCHHHHHHTTSSCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
T ss_conf 65645410789758999999999999999999860766763011344889999999999827699899999999739989
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000235 1717 ------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------~ 1717 (1815)
.
T Consensus 561 ~s~~~ll~yf~pl~~wl~~~n~~~~~gw~~~~~~~~~ 597 (597)
T d2ajfa1 561 MNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPYAD 597 (597)
T ss_dssp CCSHHHHHHTHHHHHHHHHHGGGSCCSCBSSCCSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9869999999999999999658998898999898999
|
| >d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Periplasmic nitrate reductase alpha chain species: Desulfovibrio desulfuricans [TaxId: 876]
Probab=100.00 E-value=0 Score=45317.11 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~p~k~v~t~C~~C~~gC~i~v~v~dG~i~ri~g~~~~~n~G~lC~kG~~~~~~~y~pdRl~~Pl~R~~~~g~~~~iSWdE 80 (597)
T d2jioa2 1 RPEKWVKGVCRYCGTGCGVLVGVKDGKAVAIQGDPNNHNAGLLCLKGSLLIPVLNSKERVTQPLVRRHKGGKLEPVSWDE 80 (597)
T ss_dssp CCSEEEEEECSSCTTCCEEEEEEETTEEEEEEECTTSTTTTCCCHHHHTCHHHHHCSCSCCSCEECSSTTCCCEECCHHH
T ss_pred CCCCEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCEEEECCCCCEEECCHHH
T ss_conf 99988987899980679969999999999997189999986008878758987579963107847747999888828999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Ald~ia~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~~~~~~~gt~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 160 (597)
T d2jioa2 81 ALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYAD 160 (597)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTTCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHH
T ss_conf 99999999999999759986999906874338899999876402587775556543333201234431024567766422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~a~~il~~G~n~~~~~p~~~~~~~~~~~~~~G~kliviDPr~t~ta~~Ad~~l~irPGtD~al~lam~~~ii~~~l~d 240 (597)
T d2jioa2 161 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDN 240 (597)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCCTTCHHHHHHHHHHHHHHTTCSC
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCCH
T ss_conf 13531898736654324871788999888751898799538877761786152412478605777654300221224435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~fv~~~~~~~d~~~~~~~~e~~~~~v~~~tpe~aa~itGv~~~~I~~~a~~~a~~~~~~i~~g~g~~~~~~g~~~~~a~ 320 (597)
T d2jioa2 241 PRFWQRYVNFMDAEGKPSDFEGYKAFLENYRPEKVAEICRVPVEQIYGAARAFAESAATMSLWCMGINQRVQGVFANNLI 320 (597)
T ss_dssp HHHHHHHEEEECTTSCEECHHHHHHHHGGGCHHHHHHHHTSCHHHHHHHHHHHHHSSSEEEEECHHHHSSTTHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 89999850210013575325788899873999999988758888876778898744615999414213245441478899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~L~~l~Gn~g~~Ggg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (597)
T d2jioa2 321 HNLHLITGQICRPGATSFSLTGQPNACGGVRDGGALSHLLPAGRAIPNAKHRAEMEKLWGLPEGRIAPEPGYHTVALFEA 400 (597)
T ss_dssp HHHHHHHTCCSBTTBEEEECCCSSSHHHHTTTTTCSTTEETTTEETTCHHHHHHHHHHHTCCTTCSCSSCCCCHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997567867887603675432235677334465555665555778715666777631686455788776339999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~g~np~~~~~~~~~~~~al~~~d~~vV~~~~~~~t~Ta~~ADvVLP~~t~~E~~~~~~~~~~~~~~~~~ 480 (597)
T d2jioa2 401 LGRGDVKCMIICETNPAHTLPNLNKVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDGVYGCGERRYSLTEK 480 (597)
T ss_dssp HHHTSSCEEEEESCCHHHHSSSHHHHHHHTTCTTCEEEEECSCTTCGGGGTCSEEECBCCGGGSCEEEECTTSEEEEECC
T ss_pred HHCCCCEEEEEECCCCHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEECC
T ss_conf 55698417999647612101246899999958643454320467666788755267665503540524468850898731
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~v~P~geak~d~~I~~~LakrlG~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~t~e~l~~~~~i~~P~~~~~~~g~~~ 560 (597)
T d2jioa2 481 AVDPPGQCRPTVNTLVEFARRAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTRERLRKESGLIWPCPSEDHPGTSL 560 (597)
T ss_dssp CSCCCTTCBCHHHHHHHHHHHTTCCGGGGCCSSHHHHHHHHHHHHTTSTTCCTTCCHHHHHHSSCEESCCCSTTCCCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEE
T ss_conf 55896133679999999999839985368998999999999986368998877899999952798037899988999737
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000235 1717 ------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------~ 1717 (1815)
.
T Consensus 561 ~~~~g~~~~~~~~~~~~~~~~~tpsGk~~~~~~p~~~ 597 (597)
T d2jioa2 561 RYVRGQDPCVPADHPDRFFFYGKPDGRAVIWMRPAKG 597 (597)
T ss_dssp TTBTTTCTTSCTTCSSSBCCTTSTTSCEEEECCCCCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 7237876656555654557778989656897279898
|
| >d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Molybdenum cofactor-binding domain superfamily: Molybdenum cofactor-binding domain family: Molybdenum cofactor-binding domain domain: Aldehyde oxidoreductase species: Desulfovibrio desulfuricans [TaxId: 876]
Probab=100.00 E-value=0 Score=45246.18 Aligned_cols=1 Identities=0% Similarity=-0.694 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~eAl~~dAp~vh~~~~n~~~~~~~~~g~~~~~~~~~~A~~Vve~~y~~~~~~h~~mEp~~~~a~~~~~g~l~v~~~t 80 (596)
T d1dgja4 1 MSAPEAMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVVAEGSYYTQRQPHLPIEPDVGYGYINEQGQVVIHSKS 80 (596)
T ss_dssp CSHHHHHSTTCCCSBTTBCSEEEEEEEEESSCSHHHHSCTTSEEEEEEEEECCCCCCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCEEEEEEEEECCEEEECCCCCEEEEEECCCCCEEEEECC
T ss_conf 99789708999771899895145787517877678865799989999999898854146786599999979819999699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Q~p~~~r~~~A~~lgl~~~~~v~vi~~~vGGgFG~K~~~~~e~~~a~aa~~~grPVk~~~~R~e~~~~~~~r~~~~~~~~ 160 (596)
T d1dgja4 81 VAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEALVGVAVMATGRPCHLRYNYEQQQNYTGKRSPFWTTMR 160 (596)
T ss_dssp SCHHHHHHHHHHHHTCCTTTTEEEEECBCSCCTTGGGSCSSHHHHHHHHHHHCSCEEEECCHHHHHHSSCBCCCEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 68999999999984978043289993898718988865548999999999978980676311114345667545610056
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~g~d~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~p~~~~a~E~~~ 240 (596)
T d1dgja4 161 YAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIRGTGRTVATNHCWGAAFRGYGAPESEFPSEVLM 240 (596)
T ss_dssp EEECTTSCEEEEEEEEEEECCSCCTTHHHHHHHHHHHTTTTBCCSEEEEEEEEECCSSCCBCCCTTTTHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCCCHHCCCCCCEEEHHHH
T ss_conf 73144145415887654023554446753012222102565404689999863024445653101001234430125678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 D~~A~~lg~DP~e~R~~N~i~~g~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rG~G~a~~~~~~g~~~ 320 (596)
T d1dgja4 241 DELAEKLGMDPFELRALNCYREGDTTSSGQIPEVMSLPEMFDKMRPYYEESKKRVKERSTAEIKRGVGVALGVYGAGLDG 320 (596)
T ss_dssp HHHHHHHTCCHHHHHHHHBCCTTCCCTTSCCCSCCCHHHHHHHHHHHHHHHHHHHHTTCCSSEEEEEEEEEEEEEESSSS
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 87777642488999987631478655543342013458889998776777542024331232345310000122001235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~a~v~i~~dG~v~v~~g~~~~GqG~~T~~~qi~~~aae~LGi~~e~V~v~~~DT~~~p~~~~t~gSr~t~~~g~Av 400 (596)
T d1dgja4 321 PDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAI 400 (596)
T ss_dssp SCEEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHTGGGTCCGGGEEEEESBTTTSCCCCCSCTTCTTTHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 76532499996057531111102357665442334236466631886322212127877788987666767543343157
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~Aa~~l~~~l~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~eVeVD~~TG~v~v~~~~ 480 (596)
T d1dgja4 401 RVACEMLIEGMRKPGGGFFTPAEMKAEGRPMRYDGKWTAPAKDCDAKGQGSPFACYMYGLFLTEVAVEVATGKATVEKMV 480 (596)
T ss_dssp HHHHHHHHHHTBCSSSSBCCHHHHHHTTCCCEEEEEEECSCBCCCTTSCSBCCSEEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEE
T ss_conf 99999999998765334567577530243211343212565444435667864310246899999996155653366899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~v~D~G~vINP~~v~gQi~Gg~~~GiG~aL~E~~~~~~~~~~~~~Y~ip~~~d~P~~i~v~~~e~p~~~~p~GaKGiGE~ 560 (596)
T d1dgja4 481 CVADIGKICNKLVVDGQIYGGLAQGVGLALSEDYEDLKKHSTMGGAGIPSIKMIPDDIEIVYVETPRKDGPFGASGVGEM 560 (596)
T ss_dssp EEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCCSTTTTSSTTTTTCCCGGGSCSCEEEEECCCCCTTSGGGBCCCTTG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCCCCCCEECCCC
T ss_conf 99967856698999999987899999999848112765788942479984644887768999747999999886035254
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000235 1717 -----------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------~ 1717 (1815)
+
T Consensus 561 ~~~~~~~AI~nAI~~A~G~r~~~lP~tPe~v~~Al~ 596 (596)
T d1dgja4 561 PLTAPHAAIINGIYNACGARVRHLPARPEKVLEAMP 596 (596)
T ss_dssp GGSSHHHHHHHHHHHHHSCCCCBSCCCHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
T ss_conf 202089999999999679885778989999997583
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=100.00 E-value=0 Score=45240.66 Aligned_cols=1 Identities=0% Similarity=0.071 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~W~~~g~~~~~~r~s~l~qI~~~Nv~~L~~aW~~~~~~~~~~~~tPiv~~g~ly~~t~~~~~v~a~d~ 80 (596)
T d1w6sa_ 1 NDKLVELSKSDDNWVMPGKNYDSNNFSDLKQINKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGL 80 (596)
T ss_dssp CHHHHHHHTSTTCBCSTTSSTTCCCEECCCSSCTTTGGGEEEEEEEECSCCSCCCSCCEEETTEEEEECSTTTCEEEEET
T ss_pred CHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHCCHHHHHHCEEEEEEECCCCCCCEECCEEECCEEEEEECCCCCEEEEEC
T ss_conf 95473276898854644889867866863434975862221899997899998541998999999995178996899957
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~ 160 (596)
T d1w6sa_ 81 DDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTI 160 (596)
T ss_dssp TCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCS
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCC
T ss_conf 99887788703878864343213566665169832799886299998079876854365684102310146555642245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~ 240 (596)
T d1w6sa_ 161 APYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG 240 (596)
T ss_dssp CCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCC
T ss_pred CCCEECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 88177775899302344433573289887888577886535886554555445433333454554666678873334787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G 320 (596)
T d1w6sa_ 241 TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDG 320 (596)
T ss_dssp CCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTS
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCC
T ss_conf 42256221567772540564555652023565333444301026355001001240302565776542106531033335
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~ 400 (596)
T d1w6sa_ 321 KARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSY 400 (596)
T ss_dssp CEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEE
T ss_pred CCCCCEECCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 55321001465432254067788255401446656544542112453212741023577655357415444344676554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~l 480 (596)
T d1w6sa_ 401 DPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTM 480 (596)
T ss_dssp ETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCE
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCEE
T ss_conf 77775597235334321354345554565311442320247566745578855389980788856233278888744146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~~G~gg~~~~~~~~~~~~~~~~~~~~~ 560 (596)
T d1w6sa_ 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVG 560 (596)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTTTHHHHHTCCCTTCGGGHHH
T ss_pred EECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86699799978999599999999848369989999540776899899999999936786545443333457632334201
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000235 1717 -----------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------~ 1717 (1815)
.
T Consensus 561 ~~~~~~~~~~~g~~l~vf~l~g~~~~~~~~~~~~~~ 596 (596)
T d1w6sa_ 561 AFKKLANYTQMGGGVVVFSLDGKGPYDDPNVGEWKS 596 (596)
T ss_dssp HTTTGGGTCCCCCEEEEEEETTCCTTSSTTTTCCC-
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 211102456779989999969978799998421239
|
| >d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae (Corallina officinalis) [TaxId: 35170]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acid phosphatase/Vanadium-dependent haloperoxidase superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase family: Haloperoxidase (bromoperoxidase) domain: Haloperoxidase (bromoperoxidase) species: Red algae (Corallina officinalis) [TaxId: 35170]
Probab=100.00 E-value=0 Score=45167.97 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~R~~~a~~~R~~aa~~a~~~~~~~~~~Ngde~~y~~~~~~~p~~~~~ftKgLpHd~~G~lvd~~~y~~l~~a 80 (595)
T d1qhba_ 1 GIPADNLQSRAKASFDTRVAAAELALARGAVPSFANGEELLYRNSETGDPSFIGSFTKGLPHDDNGAIIDPDDFLAFVRA 80 (595)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHTCCCCCCBCSGGGTSBCTTTCSBCCTTBCCTTSCBCTTSSBSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 97424667899999999999998741489988657843665314556884322102568987656761799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 i~~Gd~~~~e~v~lg~~~dp~~~~~~~~~~~~~~~~~~~rkl~nP~ag~a~dl~Gpd~~~~tmppaP~l~S~elAaEmaE 160 (595)
T d1qhba_ 81 INSGDEKEIAALTLGPARDPETGLPIWRSDLANSLDLEVRGWENSSAGLTFDLEGPDAQSVAMPPAPVLTSPELIAEMAE 160 (595)
T ss_dssp HHHCCHHHHHTSCCSSCBCTTTCCBCCSSHHHHHTTCCBCCCSCTTGGGCCCSSSSCTTSSCCCCCCCTTSHHHHHHHHH
T ss_pred HHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 86488144320135676676556531000112355422101237776236750267735530799999898889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 lYwmALlRDvpF~~~~~~~~~~~i~~A~~~L~~l~~F~~~~~~~~~~~~~~~~~g~vt~~tLFRg~~pG~~~GPyiSQFl 240 (595)
T d1qhba_ 161 LYLMALGRDIEFSEFDSPKNAAFIRSAIERLNGLEWFNTPAKLGDPPAEIRRRRGEVTVGNLFRGILPGSEVGPYLSQFI 240 (595)
T ss_dssp HHHHHHTTTSBGGGTTSGGGHHHHHHHHHHHTTSHHHHSCCCTTSCHHHHHHCCCCCCTTTTTCCCSTTTTSSCSSCGGG
T ss_pred HHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 99999863798877078751078999999865050125777677764000357885688885056688866686230344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 L~g~~~~~~~~~~~~~~~~~~~~~~~~gdi~yGa~~i~qr~r~~~pg~DyMT~~~eWl~vQnG~~~~~~~~~d~~~R~I~ 320 (595)
T d1qhba_ 241 IVGSKQIGSATVGNKTLVSPNAADEFDGEIAYGSITISQRVRIATPGRDFMTDLKVFLDVQDAADFRGFESYEPGARLIR 320 (595)
T ss_dssp TCCCCCTTCEEETTEEECCTTGGGGGGTEEEETTEEEECCEEEECTTCCBCCSHHHHHHHHTTBCCTTCCCEEEEEESCC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEC
T ss_conf 20465445433344233454446666676445767722433357899630016598876305898665445788653026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 t~RDLa~~VH~D~lyqay~nAaLILL~~ga~~dpg~Py~~~~~~~~q~gF~~fGgphiLslvaevA~rAlkaaw~QKw~v 400 (595)
T d1qhba_ 321 TIRDLATWVHFDSLYEAYLNACLILLANGVPFDPNLPFQQEDKLDNQDVFVNFGSAHVLSLVTEVATRALKAVRYQKFNI 400 (595)
T ss_dssp BHHHHHHHHHHCCTTHHHHHHHHHHHHHTCCBCTTSTTCSCHHHHCCCCBTTBSHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88898778604513699999999980699867899987664211245564324616999999999999999999998765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 HrrLRPEa~ggri~~~~~~~l~~~~~~p~~~~~~~~~~~~l~~v~~~n~~~n~~~~~~~~~~tyLLPmAf~EGSPtHPsY 480 (595)
T d1qhba_ 401 HRRLRPEATGGLISVNKNAFLKSESVFPEVDVLVEELSSILDDSASSNEKQNIADGDVSPGKSFLLPMAFAEGSPFHPSY 480 (595)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHTHHHHHHHHHHHHHHHHHHTCCCSSCCCCCCBSSTTCSCSSCSS
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 73148788755677654032345567652678888767678999988753045555556787501452245799999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~AGHAtvAGA~vTiLKAfFd~~~~~~~~~~~~~dg~~lv~~~~~g~LTveGELNKLAaNIaiGRn~aGVHwrsD~~~gl~ 560 (595)
T d1qhba_ 481 GSGHAVVAGACVTILKAFFDANFQIDQVFEVDTDEDKLVKSSFPGPLTVAGELNKLADNVAIGRNMAGVHYFSDQFESLL 560 (595)
T ss_dssp SCHHHHHHHHHHHHHHHHBTTTCEECCCEEECSSSSSEEECSSCCCEEHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 50189888899999999972677678875568887630235898650321437888888886135556401455546666
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------9
Q 000235 1717 ----------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------~ 1717 (1815)
-
T Consensus 561 LGE~iAi~iL~e~~~ty~E~~~~~f~~FDG~~i~I 595 (595)
T d1qhba_ 561 LGEQIAIGILEEQSLTYGENFFFNLPKFDGTTIQI 595 (595)
T ss_dssp HHHHHHHHHHHHHGGGCCSCCCCEEECTTSCEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEC
T ss_conf 36999999999998744776034776048967749
|
| >d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prokaryotic type I DNA topoisomerase superfamily: Prokaryotic type I DNA topoisomerase family: Prokaryotic type I DNA topoisomerase domain: DNA topoisomerase I, 67K N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=44861.69 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 gK~LiIaEKPs~Ak~Ia~~Lg~~y~V~~~~GHl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (591)
T d1mw9x_ 1 GKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEA 80 (591)
T ss_dssp CCEEEEESCHHHHHHHHTTSCTTEEEEECCSCCEESCC-----------------------CHHHHHHHHTEETTTTTEE
T ss_pred CCEEEEECCHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 98799989899999999981999899954673067888766664323333233445542000001000158674657733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~k~~~~ik~l~k~~d~iiiAtD~DrEGE~I~~~i~~~~~~~~~~~~R~~~~~lt~~~i~~A~~n~~~~~~~l 160 (591)
T d1mw9x_ 81 HYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNIDR 160 (591)
T ss_dssp CCEECTTCHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHHCSCGGGEEECCCSSCSHHHHHHHHHSCBCCCHHH
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHH
T ss_conf 37989756899999999983499899888897365099999999963589865899945678899999874766446148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~a~~aR~~~D~liG~n~Sr~~t~~~~~~lS~GRVQtPtL~lIv~Re~ei~~f~p~~y~~i~~~~~~~~~~~~~~~~~~~ 240 (591)
T d1mw9x_ 161 VNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQ 240 (591)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCTTHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHCCCCEEEEEHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHCCC
T ss_conf 89999999888777775266776531256560010474116540118899806885332221465057863344431125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~pP~pf~l~~Lq~~a~~~~g~s~~~tl~iaQ~LYE~g~ITYPR 320 (591)
T d1mw9x_ 241 NDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMR 320 (591)
T ss_dssp TTEECCCCSHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTSBCCSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf 56410055589999877543311232112334413467899825799999999884987999999999986487444201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Tds~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ah~~~~~~~~~~~~~~~~~~~~~e~kvY~LI~rrflas 400 (591)
T d1mw9x_ 321 TDSTNLSQDAVNMVRGYISDNFGKKYLPESPNQYASKENSQEAREAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVAC 400 (591)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTCGGGSCSSCCCCC--------CCCBCBSCTTCCGGGCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 57632318999999999998761443101342013565565564345666765443222126867899999999888773
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~a~~~~t~~~~~~~~~~F~a~g~~~~~~Gw~~v~~~~~~~~~~~~lp~l~~g~~~~~~~~~~~e~~TkPP~~yTeat 480 (591)
T d1mw9x_ 401 QMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEAS 480 (591)
T ss_dssp TSCCEEEEEEEEEEEETTEEEEEEEEEEEECGGGGGSCCC----CCCCCCCCCTTCEEEEEEEEEEEEECCCCCCCCHHH
T ss_pred CCCCEEEEEEEEEEEECCCEEEEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHH
T ss_conf 16772887788775415717999889999668468862423355445388768899788999888776528998889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 Li~~ME~~GIGTpATra~iIe~L~~R~Yi~~~~k~l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~Ld~I~~G~~~~~ 560 (591)
T d1mw9x_ 481 LVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWK 560 (591)
T ss_dssp HHHHHHHTTCCCTTTHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999837999736589999999868989930988856477999999998750552598899999999999985998899
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
-
T Consensus 561 ~~l~~~~~~~~~~v~~~~~~~~~~g~~p~~~ 591 (591)
T d1mw9x_ 561 AVLDHFFSDFTQQLDKAEKDPEEGGMRPNQM 591 (591)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGTCCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
T ss_conf 9999999999999999850704217898899
|
| >d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter BtuB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane beta-barrels superfamily: Porins family: Ligand-gated protein channel domain: Outer membrane cobalamin transporter BtuB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=44853.32 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 s~deVvVta~~~~~~~~~~~~~v~~i~~~~i~~~~~~~~~~~l~~~pGv~~~~~~~~~~~~~i~iRG~~~~~~~~~idG~ 80 (591)
T d2gufa1 1 SPDTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDGV 80 (591)
T ss_dssp CTTCEESTTTSSCEEGGGCCSCEEEEEHHHHHHHTCSSSHHHHTTSTTEEEEC------CCEEEETTEEGGGEEEEETTE
T ss_pred CCCEEEEEECCCCCCHHHCCCCEEEECHHHHHHCCCCCHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCEEEECCE
T ss_conf 99649998437623766668657998999997617999999997589879972678787561899698887636999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~ie~IeV~kg~~sa~yG~~a~gGvIni~tk~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (591)
T d2gufa1 81 RLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGWGSNSYQNYDVSTQQQLGDK 160 (591)
T ss_dssp ECCCCSTTGGGGGGGSCGGGCSEEEEEESCCHHHHCTTCSSEEEEEECCCCCCEEEEEEEEETTTEEEEEEEEEEESSTT
T ss_pred ECCCCCCCCCCCCCCCCHHHCCEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84576667754304599889518999958811302535543333322123554333321222122223233446663112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (591)
T d2gufa1 161 TRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFLSKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPLLDTR 240 (591)
T ss_dssp EEEEEEEEEEEEC------------------CCEEEEEEEEEEEEESSSSEEEEEEEEEEEEEEECC-----------EE
T ss_pred CEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21787520022212201355665323433310112321121234111233455310000012343224445555532211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 320 (591)
T d2gufa1 241 KLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTT 320 (591)
T ss_dssp EEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEECTTTCTTSTTCEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 11123334464322111244310022012222123544542454323310010010022211465321357401012246
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 400 (591)
T d2gufa1 321 PGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYG 400 (591)
T ss_dssp CTTCCGGGSEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEEEECCCHHHHHS
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 63211111222222233210110011102310321011232222321121111244432332322111112443000110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~gn~~l~pe~~~~~e~g~~~~~~~~~~~~~~f~~~~~~~i~~~~~~~~~~N~~~~~~~G~e~~~~~~~~~~~~~~~~~~ 480 (591)
T d2gufa1 401 FYGNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDY 480 (591)
T ss_dssp TTCCTTCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEEE
T ss_conf 24773233211112232201035642565301223322221111111122233310110011100134665259999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~dl~~~y~~~~~~~l~~ 560 (591)
T d2gufa1 481 VDARNAITDTPLLRRAKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSLWDLAVAYPVTSHLTVRG 560 (591)
T ss_dssp EEEEETTTCCBCTTCCSEEEEEEEEEEETTEEEEEEEEEECCEEEEECSSSSCEEEEECCEEEEEEEEEEESSSSEEEEE
T ss_pred EEEEECCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCEEECCEEEEEEEEEEEECCCEEEEE
T ss_conf 96074678978667887089999999958879999999999998224667765745618889999999999389879999
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
=
T Consensus 561 ~v~Nl~d~~Y~~~~~y~~~gR~~~~~~~y~F 591 (591)
T d2gufa1 561 KIANLFDKDYETVYGYQTAGREYTLSGSYTF 591 (591)
T ss_dssp EEESTTCCCC--------CCCEEEEEEEEEC
T ss_pred EEEECCCCCEEEECCCCCCCEEEEEEEEEEC
T ss_conf 9994899950101786689969999999989
|
| >d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Sec1/munc18-like (SM) proteins superfamily: Sec1/munc18-like (SM) proteins family: Sec1/munc18-like (SM) proteins domain: Neuronal Sec1, NSec1 species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]
Probab=100.00 E-value=0 Score=44782.14 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~l~~~~~~v~~~~~wKvLi~D~~t~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~eni 80 (590)
T d1epua_ 1 ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESV 80 (590)
T ss_dssp CHHHHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHCCHHHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCHHHH
T ss_conf 96899999999999870588887579998477678898656899999789969974367788899999899978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~l~~la~~~~~~~i~~i~e~~~df~~l~~~lfsl~~~~~~~~~~~~~~~~~ 160 (590)
T d1epua_ 81 KCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQG 160 (590)
T ss_dssp HHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHSTTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGGSTT
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCEEECCCCEEEECCCCHHHHHCCCCHHHC
T ss_conf 99999961221155763999988989999999997354223578489995032857798799569717777518500002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~DliTPLl 240 (590)
T d1epua_ 161 GIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLL 240 (590)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCSSGGGS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 31689999999999999819997699967830889999999999999762376556777888866999856653001203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 h~~TYqaLi~e~~~I~~n~v~~~~~~~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 320 (590)
T d1epua_ 241 HELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAG 320 (590)
T ss_dssp CCCBHHHHHHHHSCCBTTEECC-----------CEECCGGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--------C
T ss_pred CCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 55307889998726448836734788887763156348763378987236599999999999999998766530246457
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~l~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~i~~~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d 400 (590)
T d1epua_ 321 IKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYD 400 (590)
T ss_dssp CCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHHHTCTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999983999999999999999999999999888999999999998478832236767899999997078999799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~LRLl~l~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~d~~y~~s~y~ 480 (590)
T d1epua_ 401 KIRIILLYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWT 480 (590)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSCCCCCTTSGGGSCCCCSCCSCGGGCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCH
T ss_conf 99999999986058876899999998199878999999999827862245654442012000132357765514031435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 Pli~~lve~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVfvvGGvTy~Ei~~l~~l~~~ 560 (590)
T d1epua_ 481 PYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRLIIFVVGGISYSEMRSAYEVTQT 560 (590)
T ss_dssp CHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------------CCCCEEEEEEETCBCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 89999999998479984464100688887433455423457666777765567899799999899289999999999985
Q ss_pred -----------------------------C
Q ss_conf -----------------------------9
Q 000235 1717 -----------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------~ 1717 (1815)
+
T Consensus 561 ~~~~~~iiiGsT~i~n~~~fl~~l~~l~~~ 590 (590)
T d1epua_ 561 AKNNWEVILGSTHILTPEGLLRDLRKISNP 590 (590)
T ss_dssp SCSSCEEEEEESSBCCHHHHHHHHHTTSCC
T ss_pred HCCCCEEEEEECCEECHHHHHHHHHHHCCC
T ss_conf 289967999828752599999999862699
|
| >d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Sec1/munc18-like (SM) proteins superfamily: Sec1/munc18-like (SM) proteins family: Sec1/munc18-like (SM) proteins domain: Neuronal Sec1, NSec1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=44703.42 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~l~~~~~~v~~~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~~n 80 (589)
T d1dn1a_ 1 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKS 80 (589)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCHHHHHHCCCEEEEECCCCCCCCCCCCEEEEECCCHHH
T ss_conf 97689999999999986267888617999818767899864689999978992897536788889999989998489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 i~~i~~d~~~~~~~~Y~~~~i~F~~~~~~~~le~La~~~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~~~~~~ 160 (589)
T d1dn1a_ 81 VHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQ 160 (589)
T ss_dssp HHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGTT
T ss_pred HHHHHHHHCCHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCEEECCCCEEEECCCCHHHHHCCCCCCC
T ss_conf 99999986240012547299998898999999999855732367769998401660788878724884588852885121
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~DliTPL 240 (589)
T d1dn1a_ 161 MKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPV 240 (589)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 00289999999999999981999769980783177999999999999987328666777666786599843676631200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 lh~~TYq~li~e~~gI~~n~v~i~~~~~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~~~~~~s 320 (589)
T d1dn1a_ 241 LHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTT 320 (589)
T ss_dssp SCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 56640798999985654885883377888665147635887477998612569999999999999999876521211146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~d 400 (589)
T d1dn1a_ 321 MRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYD 400 (589)
T ss_dssp CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHHCTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999970999999999999999999999998999999999999998088720236788999999998568998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~LRL~~l~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~y~Pl~~ 480 (589)
T d1dn1a_ 401 KIRIILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKERISEQTYQLSRWTPIIK 480 (589)
T ss_dssp HHHHHHHHHHHTTCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCGGGCCCCCCCCCCCCSCCCTTCCCCCHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999999997289999999999998199968999999999827853457514205664213577654143126168999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~l~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVF~vGGvTy~E~~~l~~l~~~~~~~ 560 (589)
T d1dn1a_ 481 DIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKW 560 (589)
T ss_dssp HHHHHHHTTCSCTTTSCCSSCC--------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999984899834386437876644466543323466666678776789997999998994899999999999874994
Q ss_pred ----------------------------C
Q ss_conf ----------------------------9
Q 000235 1717 ----------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------~ 1717 (1815)
-
T Consensus 561 ~iiiGsT~iln~~~fl~~l~~L~~~~~~~ 589 (589)
T d1dn1a_ 561 EVLIGSTHILTPQKLLDTLKKLNKTDEEI 589 (589)
T ss_dssp EEEEEESSEECHHHHHHHHTTTTSCSSCC
T ss_pred EEEEEECCEECHHHHHHHHHHHCCCCCCC
T ss_conf 69998588735999999998718860249
|
| >d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea virus [TaxId: 11099]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Bovine viral diarrhea virus [TaxId: 11099]
Probab=100.00 E-value=0 Score=44627.17 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ekl~~~~a~tdtt~f~q~~~~ 80 (588)
T d1s48a_ 1 VIREHNKWILKKIRFQGNLNTKKMLNPGKLSEQLDREGRKRNIYNHQIGTIMSSAGIRLEKLPIVRAQTDTKTFHEAIRD 80 (588)
T ss_dssp CCCGGGGGGGGGEEEECCSCCSSSCCCEEESBCCCTTSCCCBSSCHHHHHHHHHTTCCGGGSSEEEBCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 93222045753430268722100689267779987515320048888987735565002213542233466088887653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 kvd~~~~~~~~~~~~~~~~v~~~~~~~~~k~~~r~~t~EE~i~kv~~~aA~G~~~k~~~~~~~~~e~~~~e~~~~~~~~g 160 (588)
T d1s48a_ 81 KIDKSENRQNPELHNKLLEIFHTIAQPTLKHTYGEVTWEQLEAGVNRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKAG 160 (588)
T ss_dssp HTCCCCCCCCTTHHHHHHHHHHTTCCGGGTTCBCCCCHHHHTTTCCTTCCCCTTCSCCTTHHHHTTHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCC
T ss_conf 07887889993189999999999999987206441679999987434302574301030000010223149999998668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~t~mgK~Ek~~v~~~~k~ge~~~~K~sR~I~y~~Lg~R~~e~~aLy~~~~~~P~~i~Gyg~~~~~~q~~~~i~k 240 (588)
T d1s48a_ 161 RKIKYYETAIPKNEKRDVSDDWQAGDLVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFDKVRK 240 (588)
T ss_dssp CCCCCCEEEEECCCEEECHHHHHSSCCCSSBCCCEEEECCSSHHHHHHHHSHHHHTTSSCCSTTBGGGSCGGGHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 85443203330101334345445411025788717863783078999998788897488632355323678999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 kW~~f~~Pvaig~DtsrFDqhVT~~dLe~Eh~Iy~~~~~~~~~k~l~~l~~~v~~gp~~t~dG~iykr~g~R~SGq~~Ts 320 (588)
T d1s48a_ 241 EWDSFNEPVAVSFDTKAWDTQVTSKDLQLIGEIQKYYYKKEWHKFIDTITDHMTEVPVITADGEVYIRNGQRGSGQPDTS 320 (588)
T ss_dssp HHHTSSSEEEEECCBTTHHHHCCHHHHHHHHHHHHHHBCGGGHHHHHHHHHHTTSEEEEETTSCEEEECCCCCTTSTTHH
T ss_pred HHHCCCCCEEEECCCCHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCCCCCCH
T ss_conf 98667897399712650145689999996999999871969999999999887477367789808966797688986612
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~gNTLt~~lam~yal~e~~GI~~~~~d~~~r~~VnGDDcVVI~E~~~~~~~~~~~l~~f~elG~~~k~~e~~~~kpvydl 400 (588)
T d1s48a_ 321 AGNSMLNVLTMMYAFCESTGVPYKSFNRVARIHVCGDDGFLITEKGLGLKFANKGMQILHEAGKPQKITEGEKMKVAYRF 400 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGHHHHEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCBCCCTTSSCCEESSG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCH
T ss_conf 46799999999999999759972124444453124886189984475088999899999984872766887788762146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 E~VeFCSh~pv~~~~kDGr~~yip~Rd~~~ivSk~~~s~g~~wdR~ta~~~kA~Aqc~llly~wiP~IR~FylwvL~q~P 480 (588)
T d1s48a_ 401 EDIEFCSHTPVPVRWSDNTSSHMAGRDTAVILSKMATRLDSSGERGTTAYEKAVAFSFLLMYSWNPLVRRICLLVLSQQP 480 (588)
T ss_dssp GGCCBTTBEEEEEEETTSCEEEEEECCHHHHHHHHHHCCCCSSSCCCSSSHHHHHHHHHHHHTTCHHHHHHHHHHHHSCT
T ss_pred HHCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 33755789874233058975899834710435676406788640446899999999999986994799999999997585
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~g~~~y~~e~~~~y~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~dr 560 (588)
T d1s48a_ 481 ETDPSKHATYYYKGDPIGAYKDVIGRNLSELKRTGFEKLANLNLSLSTLGVWTKHTSKRIIQDCVAIGKEEGNWLVKPDR 560 (588)
T ss_dssp TSCCCSSSSEEEEECHHHHHHHHHSSCGGGEEEECHHHHHHHTTHHHHTTCSCTTHHHHHHHHHHHHHCSSSCCTTTTSH
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 55756626641126741689999986533413421899987641400036442114411154111113124660135665
Q ss_pred ---------------------------C
Q ss_conf ---------------------------9
Q 000235 1717 ---------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------~ 1717 (1815)
-
T Consensus 561 ~v~~~tg~~~~p~~~~~~~~~~~~~~~~ 588 (588)
T d1s48a_ 561 LISSKTGHLYIPDKGFTLQGKHYEQLQL 588 (588)
T ss_dssp HHHHHHTCCCCCCCEEEEECSCSSCCCC
T ss_pred CCCCCCCCEECCCCCCCCCCCCHHHHCC
T ss_conf 4447877255589971036613685249
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=44627.15 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~ 80 (588)
T d1b3ua_ 1 AAADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp CCSCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGT
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99776764268999999866999899999999999999984917459999999999865868999999999999998748
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~ 160 (588)
T d1b3ua_ 81 GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA 160 (588)
T ss_dssp SGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74689999999999806998899999999999999867988899999999999864631479999999999999986189
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~ 240 (588)
T d1b3ua_ 161 VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLE 240 (588)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999851699899999999999899871578779999999999744885246789998887763058889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~ 320 (588)
T d1b3ua_ 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV 320 (588)
T ss_dssp HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999720235688889999857888877665343444168999987213357779999879999998766554332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~ 400 (588)
T d1b3ua_ 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS 400 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 19999888887613887678999999886554301316788888888999987510222267788888887500313443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~ 480 (588)
T d1b3ua_ 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT 480 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 67789999998433588999999999999977184767788888877635687416899999999999998393878999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~ 560 (588)
T d1b3ua_ 481 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK 560 (588)
T ss_dssp THHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999998659987899999999999999869687899999999988599987999999999999998708075799999
Q ss_pred ---------------------------C
Q ss_conf ---------------------------9
Q 000235 1717 ---------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------~ 1717 (1815)
.
T Consensus 561 ~~l~~L~~D~d~dVr~~A~~al~~l~~~ 588 (588)
T d1b3ua_ 561 PILEKLTQDQDVDVKYFAQEALTVLSLA 588 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999975799877999999999987449
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=44162.50 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~W~~~g~~~~~~r~s~l~qI~~~Nv~~L~~aW~~~~g~~~~~~~~stPiv~~g~vy~~t~~~~v 80 (582)
T d1flga_ 1 KDVTWEDIANDDKTTGDVLQYGMGTHAQRWSPLKQVNADNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRL 80 (582)
T ss_dssp CCSCHHHHHTGGGCTTCBCSTTSSTTCCCEECCCSSCTTTGGGCEEEEEEECCTTCCSCCCCCCEEETTEEEEEETTTEE
T ss_pred CCCCHHHHHCCCCCCCCCHHHCCCCCCCCCCCHHHCCHHHHHHCEEEEEEECCCCCCCCCCCCCEEECCEEEEECCCCEE
T ss_conf 98797999527899542353388998872686454497586221288899589977787643898989999996899959
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~ 160 (582)
T d1flga_ 81 FALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTI 160 (582)
T ss_dssp EEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEE
T ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEECCCEE
T ss_conf 99968999868887688987655333444677458678158864887499811666630211102477766124038667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (582)
T d1flga_ 161 VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESW 240 (582)
T ss_dssp EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGG
T ss_pred ECCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 04884757999907665434654634872388886789871217865622466653334323445777545555776402
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~ 320 (582)
T d1flga_ 241 SHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGN 320 (582)
T ss_dssp GGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred ECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
T ss_conf 05898622542003566458964578653334434567877676432221205873355313321133223553123223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (582)
T d1flga_ 321 NELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGK 400 (582)
T ss_dssp CCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCC
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 44332343323445542357504644078624668730222356675543233566656520115644453356644554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W 480 (582)
T d1flga_ 401 AVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVW 480 (582)
T ss_dssp CEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEE
T ss_pred EEEECCCCCCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEE
T ss_conf 28977875577411441455877705310234553222233554336654266754453666887759998078995873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag~g~~~~~~~g~ 560 (582)
T d1flga_ 481 EHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGD 560 (582)
T ss_dssp EEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCTH
T ss_pred ECCCCCCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCC
T ss_conf 26779997450169769869996799969999999986867988999962167799989999999993778753334554
Q ss_pred ---------------------C
Q ss_conf ---------------------9
Q 000235 1717 ---------------------A 1717 (1815)
Q Consensus 1717 ---------------------~ 1717 (1815)
-
T Consensus 561 ~~~~~~~~~~g~~l~vF~Lp~~ 582 (582)
T d1flga_ 561 MADLTRPVAQGGSFWVFKLPSW 582 (582)
T ss_dssp HHHHHTTCCCCCEEEEEECCCC
T ss_pred CCCCCCCCCCCCEEEEEECCCC
T ss_conf 3211356688998999969999
|
| >d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FabD/lysophospholipase-like superfamily: FabD/lysophospholipase-like family: Lysophospholipase domain: Cytosolic phospholipase A2 catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=44008.69 Aligned_cols=1 Identities=100% Similarity=2.463 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 p~vR~~~~L~~~E~~~l~~R~~~~~~aL~~~L~~~~~~~~~~~~~vP~Iai~~SGGG~RAm~~gaG~l~ald~~GLLq~~ 80 (580)
T d1cjya2 1 PDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARDVPVVAILGSGGGFRAMVGFSGVMKALYESGILDCA 80 (580)
T ss_dssp CSSEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSSCSSCCCEEEEECCCHHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 98534699998999999999999999999997444755577767798799983684799999857999999758956787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 tY~aGlSGgsW~~~sly~n~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~G~~~sltD~wg~~l~~ 160 (580)
T d1cjya2 81 TYVAGLSGSTWYMSTLYSHPDFPEKGPEEINEELMKNVSHNPLLLLTPQKVKRYVESLWKKKSSGQPVTFTDIFGMLIGE 160 (580)
T ss_dssp EEEEECHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHHHHSCGGGGCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 77886259899999998089863455787799987144569102047999999999999998579987603299999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~l~~~~~~~~~S~~~~~~~~g~~P~PI~~a~~~~p~~~~~~~~~~fEftPyE~Gs~~~~Afvp~~~~Gs~f~~G~cv~~~ 240 (580)
T d1cjya2 161 TLIHNRMNTTLSSLKEKVNTAQCPLPLFTCLHVKPDVSELMFADWVEFSPYEIGMAKYGTFMAPDLFGSKFFMGTVVKKY 240 (580)
T ss_dssp HHHGGGTTCBSGGGGGGTTTSCSCEEEEEEEECCSSCCCGGGSEEEEECSSCEEETTTTEEECGGGTTSEEETTEEEECC
T ss_pred HHCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEHHHCCCCEECCEECCCC
T ss_conf 72168888873867788637899887788705578875125534999736300766778830445437642898755788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 pe~~l~fl~GtssS~Fn~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~ 320 (580)
T d1cjya2 241 EENPLHFLMGVWGSAFSILFNRVLGVSGSQSRGSTMEEELENITTKHIVSNDSSDSDDESHEPKGTENEDAGSDYQSDNQ 320 (580)
T ss_dssp CCCBHHHHHHHHTTHHHHTHHHHC---------CCHHHHHHHCCHHHHTTC---------------------------CT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 87662378855617889999999863045554402788999998742134454333201116787654333343333443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Nf~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 400 (580)
T d1cjya2 321 ASWIHRMIMALVSDSALFNTREGRAGKVHNFMLGLNLNTSYPLSPLSDFATQDSFDDDELDAAVADPDEFERIYEPLDVK 400 (580)
T ss_dssp THHHHHHHHHHHHHHTSSCTTSCSSCEEECTTTTCCC----------------------------------------CCS
T ss_pred CHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 10466655543101001113665411136465425545543445300001234323222222235765333445643457
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~L~LvDgG~~~NiP~~pLLrP~R~VDvIia~D~Sad~~~~~p~~~~L~~t~~~~~~~gipFP~Id~~~~~~~~l~ec~ 480 (580)
T d1cjya2 401 SKKIHVVDSGLTFNLPYPLILRPQRGVDLIISFDFSARPSDSSPPFKELLLAEKWAKMNKLPFPKIDPYVFDREGLKECY 480 (580)
T ss_dssp CSEEEEECGGGTCSSCHHHHCCGGGCCCEEEEEECCCCSSTTSCSCHHHHHHHHHHHHTTCCCCCCCTTHHHHHCSCSEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 88079961663426786413476756778999878898776799705799999999846997898996666632866674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 vF~g~~~~~~~~~PiVv~fPL~N~~F~~~kaPgv~r~~~~~~~~~~~~~~~~~~s~ysTf~l~Yt~e~~d~lv~L~~yNv 560 (580)
T d1cjya2 481 VFKPKNPDMEKDCPTIIHFVLANINFRKYKAPGVPRETEEEKEIADFDIFDDPESPFSTFNFQYPNQAFKRLHDLMHFNT 560 (580)
T ss_dssp EECCCSSCSSCCCCEEEEEECCCSGGGTEEETTEECCSHHHHHHHCCCSSSCTTCTTSTTCCCCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 55578877789998799972677421124688766777465324676777888888753445318999999999988886
Q ss_pred -------------------C
Q ss_conf -------------------9
Q 000235 1717 -------------------A 1717 (1815)
Q Consensus 1717 -------------------~ 1717 (1815)
+
T Consensus 561 ~nn~~~i~~~lr~ai~rkk~ 580 (580)
T d1cjya2 561 LNNIDVIKEAMVESIEYRRQ 580 (580)
T ss_dssp HTTHHHHHHHHHHHHHHSCC
T ss_pred HCCHHHHHHHHHHHHHHHCC
T ss_conf 44789999999999997339
|
| >d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Angiotensin converting enzyme, ACE
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=43936.28 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~e~~a~~~l~~~e~~~~~~~~~~~~A~~~~std~tde~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~ 80 (579)
T d1uzea_ 1 DEAEASKFVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKV 80 (579)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 97999999999999999997999897489770799799999999999999999999999986164048989999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~L~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~L~~~~~~~~~~s~d~~e~~~~~~~~~~~~~~~~~~~~~~ 160 (579)
T d1uzea_ 81 QDLERAALPAQELEEYNKILLDMETTYSVATVCHPNGSCLQLEPDLTNVMATSRKYEDLLWAWEGWRDKAGRAILQFYPK 160 (579)
T ss_dssp TCCGGGGSCHHHHHHHHHHHHHHHHHHHHCEEECSSSCEEETTTHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTTTHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85232469999999999999999998850132268987413762046665327669999999999998733444447999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 lv~lrn~~A~~~g~~~~~~~~~~~~~~~~~~~~~d~l~~~v~~~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 240 (579)
T d1uzea_ 161 YVELINQAARLNGYVDAGDSWRSMYETPSLEQDLERLFQELQPLYLNLHAYVRRALHRHYGAQHINLEGPIPAHLLGNMW 240 (579)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHGGGCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCTTTCCTTSCEETTSSSSTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCHH
T ss_conf 99999999998462459999876402424999999999999999999999999999986041104453301165521054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~d~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~f~~~~~d~~~~~gk~~g~~~~~~~~ 320 (579)
T d1uzea_ 241 AQTWSNIYDLVVPFPSAPSMDTTEAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEFWNKSMLEKPTDGREVVCHASAWDF 320 (579)
T ss_dssp SSCCGGGHHHHCSCTTSCCCCHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCCCHHHHHHCBCSCCCSSCCCCCSCEEEEC
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECC
T ss_conf 30155305534778777766525887760456999999999987876677768989863044043136876787752026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~p~i~~n~~~~~~dv~Tl~HElGHa~H~~~~~~qp~~~~~~~~~~~e~a~~~~~~l~~~~~~~l~~~~~~~~~~~~ 400 (579)
T d1uzea_ 321 YNGKDFRIKQCTTVNLEDLVVAHHEMGHIQYFMQYKDLPVALREGANPGFHEAIGDVLALSVSTPKHLHSLNLLSSEGGS 400 (579)
T ss_dssp SSSSCEEEECCCCSSHHHHHHHHHHHHHHHHHHHTTTSCGGGCSCSSHHHHHHHHHHHHHHHTSHHHHHHTTSCCC----
T ss_pred CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
T ss_conf 78851032077776304899999999999999997158740037898305778888999986188999751630124578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~e~~~~~l~~~~~~~~~~l~~~~~~~~fe~~v~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~y 480 (579)
T d1uzea_ 401 DEHDINFLMKMALDKIAFIPFSYLVDQWRWRVFDGSITKENYNQEWWSLRLKYQGLCPPVPRTQGDFDPGAKFHIPSSVP 480 (579)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTTHHHHHHHHHHHHHCEECSSCCCTTCCGGGGSTTTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEECCCCC
T ss_conf 79999999999999987619999999999998579999899999999998875588999998655366563410078984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 yy~Y~~a~vla~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~~~~L~~G~S~~~~e~lk~~~G~~~~s~~~ll~yf~pL 560 (579)
T d1uzea_ 481 YIRYFVSFIIQFQFHEALCQAAGHTGPLHKCDIYQSKEAGQRLATAMKLGFSRPWPEAMQLITGQPNMSASAMLSYFKPL 560 (579)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCSCGGGCCCTTCHHHHHHHHHHHTTTTSSCHHHHHHHHHSSCSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 79999999999999999998517667752022348899999999998186999999999996399899859999999999
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000235 1717 ------------------A 1717 (1815)
Q Consensus 1717 ------------------~ 1717 (1815)
+
T Consensus 561 ~~~l~~~~~~~~~~~gw~~ 579 (579)
T d1uzea_ 561 LDWLRTENELHGEKLGWPQ 579 (579)
T ss_dssp HHHHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHHHCCCCCCCCC
T ss_conf 9999999987699899999
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=43930.06 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~v~t~~G~v~G~~~~~~~~~~~v~~f~GIPYA~pP~~f~~p~~~~~w~g~~~at~~~~~C~Q~~~~~~~~~~sEDC 80 (579)
T d2bcea_ 1 AKLGSVYTEGGFVEGVNKKLSLFGDSVDIFKGIPFAAAPKALEKPERHPGWQGTLKAKSFKKRCLQATLTQDSTYGNEDC 80 (579)
T ss_dssp CCCCSEEETTEEEECEEEECCTTSCEEEEEEEEESSSCCCTTSCCCCCCCCSSEEECBSCCCCCSEEETTCSSEESCSCC
T ss_pred CCCCCEEECCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98882895983897089744767984799755776889877789988999998667876899898878789998688768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 L~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~~~~~~g 160 (579)
T d2bcea_ 81 LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGDSNLPG 160 (579)
T ss_dssp CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCCC
T ss_pred CEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 77899978998877999838999778865677888766677544563666403987999643111444232333457775
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 N~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~~~~~~~~~~~~~~~~~l 240 (579)
T d2bcea_ 161 NYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVGLCPWAIQQDPLFWAKRI 240 (579)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCTTSGGGSCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 30136777777777643443026767427540466540245666554036754344111577567742102468899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~lgc~~~~~~~~~~cLr~~~~~~L~~a~~~~~~~~~~~~~~~~~f~PvvDg~~lp~~P~~l~~~~~~vpiLiG~~~dE 320 (579)
T d2bcea_ 241 AEKVGCPVDDTSKMAGCLKITDPRALTLAYKLPLGSTEYPKLHYLSFVPVIDGDFIPDDPVNLYANAADVDYIAGTNDMD 320 (579)
T ss_dssp HHHHTCCCSSHHHHHHHHHHSCHHHHHHTSCCCCSCCSSCHHHHCCCSCCCCSSSSCSCGGGCGGGGTTSEEEEEEETBT
T ss_pred HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCEECCCCCCC
T ss_conf 99968874326777655313789999998752034322555565540222368878899999987335651432201554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 g~~f~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~l~tD~~f~~P~~~~ 400 (579)
T d2bcea_ 321 GHLFVGMDVPAINSNKQDVTEEDFYKLVSGLTVTKGLRGAQATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIA 400 (579)
T ss_dssp THHHHHHHCGGGTCSSSCCCHHHHHHHHHHHTGGGHHHHHHHHHHHHHGGGTTCCCHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 00000024521235411034999999976403222203689999985310235773788999987624312102069999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 a~~~~~~~~~~~vY~Y~F~~~~~~~~~~~~~Ga~H~~Dl~yvFg~p~~~~~~~t~~d~~ls~~m~~~WtnFaktGnPn~~ 480 (579)
T d2bcea_ 401 VAQHKSHAKSANTYTYLFSQPSRMPIYPKWMGADHADDLQYVFGKPFATPLGYRAQDRTVSKAMIAYWTNFARTGDPNTG 480 (579)
T ss_dssp HHHHHHHCSSCCEEEEEECCCCCCSSSCTTCCCBTTTTHHHHTTHHHHSGGGCCHHHHHHHHHHHHHHHHHHHHSCTTSS
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999837898737898606877777878778551405798729866577897989999999999999998282889998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~~~Wp~y~~~~~~yl~i~~~~~~~~~~~~~r~~~~~FW~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (579)
T d2bcea_ 481 HSTVPANWDPYTLEDDNYLEINKQMDSNSMKLHLRTNYLQFWTQTYQALPTVTSAGASLLPPEDNSQASPVPPADNSGAP 560 (579)
T ss_dssp SSCCSSCCCCCCTTTCEEEEESSCCSTTCEEECTTHHHHHHHHTHHHHSCCCC---------------------------
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78898989998899988599758888642102647777059999987405443247888898767777889998877788
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000235 1717 ------------------A 1717 (1815)
Q Consensus 1717 ------------------~ 1717 (1815)
-
T Consensus 561 ~~~~~~~~~~~~~~~~~~~ 579 (579)
T d2bcea_ 561 TEPSAGDSEVAQMPVVIGF 579 (579)
T ss_dssp -------------CEEECC
T ss_pred CCCCCCCCCCCCCCCCCCC
T ss_conf 8999988544578754469
|
| >d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis [TaxId: 38902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acid phosphatase/Vanadium-dependent haloperoxidase superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase family: Chloroperoxidase domain: Chloroperoxidase species: Curvularia inaequalis [TaxId: 38902]
Probab=100.00 E-value=0 Score=43547.44 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~p~~~~~~~~~~~~v~~WNe~~L~air~~~~~~~~~~gPpvaSR~la~~s~A~YDA~~a~~~~~~~~~~~~~~~~ 80 (574)
T d1vnsa_ 1 VTPIPLPKIDEPEEYNTNYILFWNHVGLELNRVTHTVGGPLTGPPLSARALGMLHLAIHDAYFSICPPTDFTTFLSPDTE 80 (574)
T ss_dssp CCCCCCCCCSSCGGGGGSHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHSCCSSSCCSSBTTCS
T ss_pred CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 98756899998232560599999999999997630236888998699999999999999999864754433443454333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~p~~~~~~~~~~Ais~Aa~~VL~~lfp~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~s~~~G~ 160 (574)
T d1vnsa_ 81 NAAYRLPSPNGANDARQAVAGAALKMLSSLYMKPVEQPNPNPGANISDNAYAQLGLVLDRSVLEAPGGVDRESASFMFGE 160 (574)
T ss_dssp SGGGBCCCCTTCCCHHHHHHHHHHHHHHHHHSCCTTTTTTTTSTTCCHHHHHHHHHHHHHHHHHSTTCCCTTSHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 44456888875426999999999999999653310110023334333246665415554311223454102204789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~VA~~il~~~~~Dg~~~~~~Y~p~~~~~~~~~~~~~p~~wqPt~p~~~~~~~~~~~~~v~P~Wg~v~pf~l~~~~~~~~~ 240 (574)
T d1vnsa_ 161 DVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNNPNGPKMPFRQYHAPFYGKTTKRFATQSEHFLAD 240 (574)
T ss_dssp HHHHHHHHHHCCTTTTCCTTCCCCCSTTBCCCCTTSSCEEEESSTTCTTSCEEEECCCCCTTHHHHSCCSSCSSCCCCCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999998751474435557777887665556777877520478777776555544332564145554003562124689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 PPp~~~~~~~s~ey~~~~~eV~~~G~~~~~ns~~rT~eq~~IAeFWad~p~t~~~TPPGhW~~Ia~~vs~~~~~~~~~~~ 320 (574)
T d1vnsa_ 241 PPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQGLYWAYDGSNLIGTPPRFYNQIVRRIAVTYKKEEDLAN 320 (574)
T ss_dssp CTTSGGGTTCHHHHHHHHHHHHHHHBCTTCTTCCCCHHHHHHHHHTCCCSBTTTBCHHHHHHHHHHHHHHHTCSSSCSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99877863113689999999998501234665558999999999987189875678963499999999875323422122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~l~~~Arlfa~l~~A~~DA~IA~Wd~Ky~y~~~RPvTaIR~~~~~~~~d~~W~p~~~~~~~~~~~~~TPpFPeY~SG 400 (574)
T d1vnsa_ 321 SEVNNADFARLFALVDVACTDAGIFSWKEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSG 400 (574)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCHHHHHHTCCCTTTCCTTCCBCCBCCTTSSCCCBCCSSCCSSCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 23568999999999888876567763011002520263189871654457788602067765666777889999997760
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 HStfS~AaA~VL~~~fG~d~~~~~~~~~d~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~sf~~aa 480 (574)
T d1vnsa_ 401 HATFGGAVFQMVRRYYNGRVGTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHFDSAWELM 480 (574)
T ss_dssp HHHHHHHHHHHHHHHHBTTTBCCCTTSCCCCCEEEEECGGGSSSCEEESSCCCTTSCGGGSCEEECCCCEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf 28899999999999838886654455554211123430110354434334456554434566666776403016899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~Ea~~SRiygGIH~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (574)
T d1vnsa_ 481 FENAISRIFLGVHWRFDAAAARDILIPTTTKDVYAVDNNGATVFQNVEDIRYTTRGTREDEEGLFPIGGVPLGIEIADEI 560 (574)
T ss_dssp HHHHHHHHHTTSSCHHHHSCHHHHBCBCSSTTCBCBCTTSCBCBCCGGGCCCCCEECCSSSSSCEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCEECCCHHHHHHHHCCCCCCCEEEEECCCEEECCHHHHHH
T ss_conf 99877776330041013144676457668877166668865205887884343225777733555427710020156788
Q ss_pred -------------C
Q ss_conf -------------9
Q 000235 1717 -------------A 1717 (1815)
Q Consensus 1717 -------------~ 1717 (1815)
+
T Consensus 561 ~~~~~~~~~~~~~~ 574 (574)
T d1vnsa_ 561 FNNGLKPTPPEIQP 574 (574)
T ss_dssp HHTTSCCCCGGGCC
T ss_pred HHCCCCCCCCCCCC
T ss_conf 73688889733387
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=0 Score=43472.24 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~W~~~~g~~~~~r~s~l~~I~~~nv~~L~~aW~~~~~~~~~~~stPiv~~g~v 80 (573)
T d1kb0a2 1 TGPAAQAAAAVQRVDGDFIRANAARTPDWPTIGVDYAETRYSRLDQINAANVKDLGLAWSYNLESTRGVEATPVVVDGIM 80 (573)
T ss_dssp CHHHHHHHHHHHTCSHHHHHHGGGTCCSBCSTTSSTTCCCEECCCSSCTTTGGGEEEEEEEECCCCSCCCCCCEEETTEE
T ss_pred CCCCCCCHHHHHCCCHHHHHCCCCCCCCCHHHCCCCCCCCCCCHHHCCHHHHHCCEEEEEEECCCCCCCEECCEEECCEE
T ss_conf 98532110223117653420245689974411889756866864655965762056999998999998577999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 yv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~ 160 (573)
T d1kb0a2 81 YVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ 160 (573)
T ss_dssp EEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTC
T ss_pred EEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCCEEEECCCCCCCEECCCCCCCC
T ss_conf 99789996999958999858786798876533334566566652387881899733654066616243001014675687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 240 (573)
T d1kb0a2 161 KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGG 240 (573)
T ss_dssp CSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCE
T ss_pred CCEEEEECCEEEEECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 65078601027970627992134455432218998568865102553104567777775432234323588775466379
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~ 320 (573)
T d1kb0a2 241 GGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI 320 (573)
T ss_dssp ECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE
T ss_pred CCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHEEECCCCCCCCCCCCCCCCEEEECCE
T ss_conf 87623561185433815511477754441000345666666420799615500012024436751120012201442020
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~ 400 (573)
T d1kb0a2 321 KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF 400 (573)
T ss_dssp EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred ECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 01797236202125553168861243442231122566434442112200000002346663378631567766655420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~ 480 (573)
T d1kb0a2 401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN 480 (573)
T ss_dssp ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCC
T ss_conf 88761698541115425311555323557787531035532223345688777873617875787786670516889887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~ 560 (573)
T d1kb0a2 481 GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTV 560 (573)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEE
T ss_pred CCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCEE
T ss_conf 76079869989997799919999999886857998989945167799989999999993787532334555557899889
Q ss_pred ------------C
Q ss_conf ------------9
Q 000235 1717 ------------A 1717 (1815)
Q Consensus 1717 ------------~ 1717 (1815)
.
T Consensus 561 ~~F~l~g~~~~~~ 573 (573)
T d1kb0a2 561 YTFVVGGKARMPE 573 (573)
T ss_dssp EEEEETCBCCCCC
T ss_pred EEEEECCCCCCCC
T ss_conf 9998099677969
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=43391.27 Aligned_cols=1 Identities=0% Similarity=-0.893 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w 80 (572)
T d1gjwa2 1 MLLREINRYCKEKATGKRIYAVPKLWIPGFFKKFDEKSGRCFVDPYELGAEITDWILNQSREWDYSQPLSFLKGEKTPDW 80 (572)
T ss_dssp CHHHHHHHHHHHHCCCCCCEEECGGGSCTTCCCCEEETTEEEECHHHHHHHHHHHHHTTCCSSCTTSCHHHHHTCCSGGG
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
T ss_conf 94478999999750482578858875776541310579948736751012466431100146652355202227889862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~viYei~v~~F~~~~~~g~~~~~~~~~~g~~~~Gd~~Gi~~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~~~~GY~~ 160 (572)
T d1gjwa2 81 IKRSVVYGSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSV 160 (572)
T ss_dssp GGGCCEEEECHHHHTCCCTTSSSCCCSBCTTSCBCSCCHHHHHHTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSE
T ss_pred CCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 21767999963153388999986445676557467878999998668999869988995986507655677878999886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV~NHts~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 240 (572)
T d1gjwa2 161 KNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEEL 240 (572)
T ss_dssp EEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEECTTEEETTCGGGTTCGGGSCCEEGGGSTTCCCCCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67877786545566667889999999999998628589898630345667777886765430266666666788777777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgfr~d~~~~~~~~~~~~~~~~~~~~~ 320 (572)
T d1gjwa2 241 PFKVPDEDELEIIYNKENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWDDVTF 320 (572)
T ss_dssp CSBCCCHHHHHHHHTSHHHHHHHTTBCCCHHHHCHHHHHHHHTCSSCHHHHHHHHHSEECCCBCCSSBTCCSCCBTTEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 65578876311146775345412465787243588999999987654876056501024421344455677665332123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (572)
T d1gjwa2 321 LRLYLDHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPNRELWEYLAGVIPHYQKKYGIDGARLDMGHALPKELLDLIIK 400 (572)
T ss_dssp CCCBSSCCGGGGGGSCTTCCCCCCHHHHCTTTSCCSSBCHHHHHHHTTHHHHHHHHHCCCEEEESSGGGSCHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHCCCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHH
T ss_conf 21111373100000002100000012000001334666689999875235677764165200110103576267788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~R~~~~~~~~~ 480 (572)
T d1gjwa2 401 NVKEYDPAFVMIAEELDMEKDKASKEAGYDVILGSSWYFAGRVEEIGKLPDIAEELVLPFLASVETPDTPRIATRKYASK 480 (572)
T ss_dssp HHHHHCTTCEEEECCCCGGGHHHHHHHTCSEECCCHHHHHTCTTTGGGHHHHHHTCSSCEEECSCCTTSCCGGGSTTHHH
T ss_pred HHHCCCCCEEEEEEECCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCCHH
T ss_conf 87413876078741035553422330123567536313578999999887534233340244436788531000047979
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~~~~~a~~~l~~~~GiP~iy~GdE~G~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~k~Li 560 (572)
T d1gjwa2 481 MKKLAPFVTYFLPNSIPYVNTGQEIGEKQPMNLGLDTDPNLRKVLSPTDEFFGKLAFFDHYVLHWDSPDRGVLNFIKKLI 560 (572)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTGGGTCCSCSCCCSSCCGGGGGCSCTTSTTTTCCTTTSCCCCCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999731444643262118788887788889633467885452224454333211565557879999999999
Q ss_pred -----------C
Q ss_conf -----------9
Q 000235 1717 -----------A 1717 (1815)
Q Consensus 1717 -----------~ 1717 (1815)
.
T Consensus 561 ~lRk~~~~~~~~ 572 (572)
T d1gjwa2 561 KVRHEFLDFVLN 572 (572)
T ss_dssp HHHHHTHHHHHH
T ss_pred HHHHHCHHHHCC
T ss_conf 999759896379
|
| >d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase II species: Escherichia coli, HPII [TaxId: 562]
Probab=100.00 E-value=0 Score=43323.09 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltt~~G~pv~~~~~s~t~G~rGp~llq 80 (571)
T d1p80a2 1 DSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLLE 80 (571)
T ss_dssp CCCCCTTCTTSCCSSCCCTTSSCCCCHHHHCTTCCCHHHHHGGGTEECCTTCBCBCTTSCBBSCTTCCEEESTTSCBBTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98788888988889999987788876555687776400234566642577862047999765898634104788861367
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 D~~l~eklahFdrErIPERvvHAKG~gA~G~F~vt~dis~~t~A~~F~~~Gk~tPV~vRFStv~G~~gs~Dt~rD~RGfA 160 (571)
T d1p80a2 81 DFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKITPVFVRFSTVQGGAGSADTVRQIRGFA 160 (571)
T ss_dssp CHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSCTTCCEEEEEEEEESSSCTTSCTTSSSCEEEE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 78999998740434575534557715469999988761665534650478845679998545888889876567876579
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 vKFyt~eGn~DlVgnN~PVFFirD~~kFpdfi~a~k~~p~t~~p~~~~~~~~~~dF~s~~Pes~h~~~~l~sdrg~P~Sy 240 (571)
T d1p80a2 161 TKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSY 240 (571)
T ss_dssp EEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTCCCSSCCCSHHHHHHHHHCGGGHHHHHHHHSGGGSBSCG
T ss_pred EEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 98875888512565167733258999989999973548433577643147889998863865777888873367888864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 r~m~gfgvhtF~fvn~~G~~~~VKfh~~P~~Gv~~Lt~eEA~~l~g~dpDfl~~DL~~aI~~G~~p~w~L~vQl~~~~Da 320 (571)
T d1p80a2 241 RTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEYELGFQLIPEEDE 320 (571)
T ss_dssp GGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHHHHHHHHHTCCCEEEEEEEEEEGGGT
T ss_pred CCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHHH
T ss_conf 66676653335878368988999998872798666999999986178951777899999974999727899995387677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~i~D~TK~WPe~~~P~~~VG~LtLnrnp~n~fae~Eq~aF~P~~lvpGI~~S~DpmLq~R~faY~dtqr~RlGg~ 400 (571)
T d1p80a2 321 FKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGP 400 (571)
T ss_dssp TCSSSCTTCTTCCCCTTTSCEEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEECCCCHHHHHHHHHHHHHHHHHTSST
T ss_pred HCCCCCCCCCCEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 43898867786447854684175258886478874465533220334445477626998355412354688887633787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 N~~qlPvN~p~~~~~n~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 480 (571)
T d1p80a2 401 NFHEIPINRPTCPYHNFQRDGMHRMGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYS 480 (571)
T ss_dssp TGGGSGGGCCSSCCCCSCCCCTTCCCEECCSCSSSSCSTTTTCSBCCCCCSSSCCBCCCCCEEEEEEEECCCGGGCCCSH
T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCHHH
T ss_conf 54225666776764675767733246789988757877898886557876666764346616744344327888774001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 q~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~i~~r~~~~~~~~d~~~~~~va~~lg~~~~~~~~~~~~~~~~~~~~~~~ 560 (571)
T d1p80a2 481 HPRLFWLSQTPFEQRHIVDGFSFELSKVVRPYIRERVVDQLAHIDLTLAQAVAKNLGIELTDDQLNITPPPDVNGLKKDP 560 (571)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHHHHHHHTCCCCHHHHTCCCCCCBTTBSCCG
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30998862899999999999999871899789999999999987999999999972999775544557887678889895
Q ss_pred ----------C
Q ss_conf ----------9
Q 000235 1717 ----------A 1717 (1815)
Q Consensus 1717 ----------~ 1717 (1815)
-
T Consensus 561 ~ls~~~~~~~~ 571 (571)
T d1p80a2 561 SLSLYAIPDGD 571 (571)
T ss_dssp GGCSSSSCCCC
T ss_pred CCCCCCCCCCC
T ss_conf 63056789998
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=100.00 E-value=0 Score=43313.74 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~W~~~~g~~~~~r~s~l~~I~~~Nv~~L~~aW~~~~g~~~~~~~tP~v~~g~vyv~t~~~~~v~Alda 80 (571)
T d2ad6a1 1 DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLVIGDMMYVHSAFPNNTYALNL 80 (571)
T ss_dssp CHHHHHHHTSTTCBCSTTSSTTCCCEECCCSSCTTTGGGCEEEEEEECSCCSCCCSCCEEETTEEEEECSTTTCEEEEET
T ss_pred CCCHHHCCCCCCCCHHHCCCCCCCCCCCHHHCCHHHHHHCEEEEEEECCCCCCCCCCCEEECCEEEEECCCCCEEEEEEC
T ss_conf 91232258982446412899866777873425975861032899996899998642998999999994287995999948
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~ 160 (571)
T d2ad6a1 81 NDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK 160 (571)
T ss_dssp TCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEECCEEEC
T ss_conf 99986688835888865442002476888626508869999179757821002112202344455443241453675758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~ 240 (571)
T d2ad6a1 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 85888502344234674799988898588997046886444555544544334675555664567763143797520463
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~ 320 (571)
T d2ad6a1 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred CCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEE
T ss_conf 30520083456403456752234566335565325441255011001245676331465655641145511576654046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~ 400 (571)
T d2ad6a1 321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL 400 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred ECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEE
T ss_conf 32656449998568983765554677532234556444632237643334566725777402224346652077888628
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~ 480 (571)
T d2ad6a1 401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY 480 (571)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEECCCEEEE
T ss_conf 97655344334300245667753215630331466776667756178853677846427678999875605966997999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (571)
T d2ad6a1 481 ATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHT 560 (571)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTTTHHHHTTCCCTTGGGGHHHHTTTGGGTC
T ss_pred ECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77899699999999868789989999651564898899999999906687531121123567643554210230225667
Q ss_pred ----------C
Q ss_conf ----------9
Q 000235 1717 ----------A 1717 (1815)
Q Consensus 1717 ----------~ 1717 (1815)
-
T Consensus 561 ~~g~~l~vf~l 571 (571)
T d2ad6a1 561 QMGGGLMVFSL 571 (571)
T ss_dssp CCCCEEEEEEC
T ss_pred CCCCEEEEEEC
T ss_conf 87998999969
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=43312.84 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 d~~vv~t~~G~v~G~~~~~~~~~v~~f~GIPYA~pP~g~~Rf~~P~~~~~w~~~~dat~~g~~C~Q~~~~~~~~~~~~~~ 80 (571)
T d1dx4a_ 1 DRLVVQTSSGPVRGRSVTVQGREVHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATGLSATCVQERYEYFPGFSGEEI 80 (571)
T ss_dssp CCSEEEETTEEEECEEEEETTEEEEEEEEEECSCCCCGGGTTSCCCCCCCCSSCEECSSCCCBCSCCCCCSSTTCHHHHT
T ss_pred CCCEEEECCEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97099989999997999748983899845765799896556899988999998567657899898877556765454323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~sEDCL~LNI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPV~V~ihGG~f~~Gs~~~~~~ 160 (571)
T d1dx4a_ 81 WNPNTNVSEDCLYINVWAPAKARLRHGRGANGGEHPNGKQADTDHLIHNGNPQNTTNGLPILIWIYGGGFMTGSATLDIY 160 (571)
T ss_dssp TSCSSCBCSCCCEEEEEEEC----------------------------------CCSSEEEEEEECCSTTTCCCTTCGGG
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 57898877878968999716655454444444445443333322111345655678897089998189766788764455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~ 240 (571)
T d1dx4a_ 161 NADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSS 240 (571)
T ss_dssp CCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHH
T ss_pred CHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf 43356533870687402065153334443234645456788745406777799889876455226988237124567642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 sv~~ll~sp~~~~lf~~aI~~Sg~~~~~~~~~~~~~a~~~~~~l~~~~gc~~~~~~~~~~~~l~cLr~~~~~~l~~a~~~ 320 (571)
T d1dx4a_ 241 SVNAQLMSPVTRGLVKRGMMQSGTMNAPWSHMTSEKAVEIGKALINDCNCNASMLKTNPAHVMSCMRSVDAKTISVQQWN 320 (571)
T ss_dssp HHHHHHHCTTTTTSCCEEEEESCCTTSGGGCBCHHHHHHHHHHHHHHTTSCGGGGTTCHHHHHHHHTTSCHHHHHHHGGG
T ss_pred EEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 13220114655552111200024445775445417789999999875398545311798999999974789999987554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~f~PviDG~~lp~~P~~~~~~g~~~~vPiLiG~~~dEg~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (571)
T d1dx4a_ 321 SYSGILSFPSAPTIDGAFLPADPMTLMKTADLKDYDILMGNVRDEGTYFLLYDFIDYFDKDDATALPRDKYLEIMNNIFG 400 (571)
T ss_dssp GCCSTTCCSCCCBCCSSSSCSCTTTTGGGCCGGGCEEEEEEETBHHHHHHHHHTTTTCCSSSCCCCCHHHHHHHHHHHTT
T ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 02665567877605884454676664223656788779742365123222222122214310000569999999998603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~l~~D~~f~~p~~~~a~~~a~~g~~vy~Y~F~~~~~~~~~~~~~Ga~H~~ 480 (571)
T d1dx4a_ 401 KATQAEREAIIFQYTSWEGNPGYQNQQQIGRAVGDHFFTCPTNEYAQALAERGASVHYYYFTHRTSTSLWGEWMGVLHGD 480 (571)
T ss_dssp TSCHHHHHHHHHHTCCCSSCSTTHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCEEEEEEECCCCTTCCSCGGGCSBTTH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 21067899999872156689506689999999644652434889999997238981699985057755577888852541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 Dl~yvFg~p~~~~~~~~~~d~~ls~~m~~~w~nFaktGnPn~~~~~Wp~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 560 (571)
T d1dx4a_ 481 EIEYFFGQPLNNSLQYRPVERELGKRMLSAVIEFAKTGNPAQDGEEWPNFSKEDPVYYIFSTDDKIEKLARGPLAARCSF 560 (571)
T ss_dssp HHHHHTTGGGCTTSCCCHHHHHHHHHHHHHHHHHHHHSCSCCTTSCCCCBCSSSBCCEEECSCSSSCSBCSHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHCCCCCHHHHHH
T ss_conf 58998398665768989899999999999999970808799999999996899866799579984002025868999999
Q ss_pred ----------C
Q ss_conf ----------9
Q 000235 1717 ----------A 1717 (1815)
Q Consensus 1717 ----------~ 1717 (1815)
=
T Consensus 561 W~~~~p~l~~~ 571 (571)
T d1dx4a_ 561 WNDYLPKVRSW 571 (571)
T ss_dssp HHTTHHHHHCC
T ss_pred HHHHHHHHHCC
T ss_conf 99999986559
|
| >d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formate dehydrogenase/DMSO reductase, domains 1-3 superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3 family: Formate dehydrogenase/DMSO reductase, domains 1-3 domain: Formate dehydrogenase H species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=42776.88 Aligned_cols=1 Identities=100% Similarity=0.004 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~k~v~TvC~~C~~~C~i~v~v~~G~v~ri~~~~~~~n~g~lC~kG~~~~~~~~~p~~~~~Rl~~Pl~R~~~~g~~~~ISW 80 (564)
T d2iv2x2 1 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVSW 80 (564)
T ss_dssp CEEEEEECSSBTTCCEEEEEEETTEEEEEEECCCTTTTTCCCHHHHHTTGGGGCCCSSSCBCCSCEECCSTTSCCEECCH
T ss_pred CCEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEECCH
T ss_conf 94687877988167981999999999999899999897433762554799735977687536788473079996898289
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 deAld~ia~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (564)
T d2iv2x2 81 DEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVCHGPSVAGLHQSVGNGAMSNA 160 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999987298779998258876628899999988873599875775422320677888765357866665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~G~kvvvidPr~t~ta~~Ad~~l~i~PGtD~al~lal~~~ii~~~~~ 240 (564)
T d2iv2x2 161 INEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLY 240 (564)
T ss_dssp GGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECCCTTCHHHHHHHHHHHHHHTTCS
T ss_pred CCEEECCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCC
T ss_conf 10121377799888354334514789999999879989997887774488866665325681999985512356657884
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 D~~fv~~~t~gf~~~~~~~~~~tpe~~~~i~gv~~~~I~~~A~~~~~~~~~~i~~g~g~~~~~~~~~~~~a~~~l~~l~G 320 (564)
T d2iv2x2 241 DKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTG 320 (564)
T ss_dssp CHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHHSSSEEEEEETTGGGSSSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 67888751267410012230399778666512018888999998616675499845432234336778999999999846
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~ig~~g~g~~~~~g~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (564)
T d2iv2x2 321 NLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRAAYI 400 (564)
T ss_dssp CSSSTTCSEEEECSBTTHHHHHHTTCBTTEEGGGEETTCHHHHHHHHHHTTCSCCCCSCCCCGGGHHHHHHTTSCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 78997766432467777543334576766677534568745543433303531111011110456655303787126788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~np~~~~~~~~~~~~al~kl~fvV~~d~~~teta~~ADiVLP~~~~~E~~g~~~~~~~~~~~~~~~v~P~ge~r~d~~ 480 (564)
T d2iv2x2 401 MGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKTDWQ 480 (564)
T ss_dssp ESCCHHHHSSSHHHHHHHHHHSSEEEEEESBCCHHHHTCSEEEEBCCBTTBCEEEECTTSEEEEECCCSCCSSSCBCHHH
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCEECCCEEECCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 72343010246999999986779179984256777630118643676213064686378766988105078534778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 i~~~La~rlG~~~~~~~~~e~~~~~~~~~~~~~g~t~e~l~~~g~~~~p~~~~~~~~~~~~~~~~~~f~TpsGK~ef~s~ 560 (564)
T d2iv2x2 481 IISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTC 560 (564)
T ss_dssp HHHHHHHHTTCCCCCSSHHHHHHHHHHHCTTTTTCCHHHHTTTCCEESCCCCSSTTCCBCSSSCSSCCSSTTSCEECCCC
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999998289988989999999999858576799999995079886578875445788623168999598963899813
Q ss_pred ---C
Q ss_conf ---9
Q 000235 1717 ---A 1717 (1815)
Q Consensus 1717 ---~ 1717 (1815)
.
T Consensus 561 ~~~a 564 (564)
T d2iv2x2 561 DWVA 564 (564)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 6569
|
| >d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Pullulanase PulA species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=0 Score=42698.68 Aligned_cols=1 Identities=100% Similarity=2.696 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~LdyL~~LGVtaiwL~Pi~~~ 80 (563)
T d2fhfa5 1 PEGWDGLTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIELLPVFDL 80 (563)
T ss_dssp CTTGGGCCCSSCCSSHHHHHTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEESCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHCEEEEECCHHHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 97977887866668899877908998630154053889863568474110256731556689998769988994996647
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wGYdv~ 160 (563)
T d2fhfa5 81 ATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPF 160 (563)
T ss_dssp SSSCCCGGGCCCTTSBHHHHHHHCHHHHTSTTGGGTTSSCBHHHHHHHHSTTCBTTBCHHHHHHHHHTTSSSCCCCCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 76542222222223443322232100000112210133201233331023212310244420344455667677787712
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 dy~~i~p~~Gt~~d~~~~l~Efk~lV~a~~H~rGIkVIlD~V~NHts~~h~wf~~~~~~~~~~~~y~~~~~~~~~~~~~~ 240 (563)
T d2fhfa5 161 HYTVPEGSYATDPEGTARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNAAGPTDRTSVLDKIVPWYYQRLNETTGSVESAT 240 (563)
T ss_dssp EEEEECSTTSSCCSTTHHHHHHHHHHHHHHHTSCCEEEEEECTTEESCCSSSCTTCCHHHHSTTTSBCBCTTTCCBCCTT
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 11660576676853245899999999998640672565057666367888850011567778863131588877656888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~dg~r~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (563)
T d2fhfa5 241 CCSDSAPEHRMFAKLIADSLAVWTTDYKIDGFRFDLMLYHPKAQILSAWERIKALNPDIYFFGEGWDSNQSDRFEIASQI 320 (563)
T ss_dssp SSEEBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSBHHHHHHHHHHHHTTCTTCEEEECCCCCSCTTTSCBCCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77554744305799999766777765013431103455344254443467776527541001233223444212331114
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (563)
T d2fhfa5 321 NLKGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGVGSGAGVLPNELTTLSDDQARHLADLTRLGMAGNLADFVLIDKDG 400 (563)
T ss_dssp TTTTSSCEEECHHHHHHHHCSCTTCCTTHHHHCCCGGGTTTTSCCSSCCCCHHHHHHHHHHHHHHHTTCBTTCEEECTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCHHH
T ss_conf 67764017772899999983165334420110011001102234554213211344443321035442213310013256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~vnfl~NHD~~r~~~~~~~~~~~~~~~~~~~~~~kla~~~llt~pG~P~IYyGeEiG 480 (563)
T d2fhfa5 401 AVKRGSEIDYNGAPGGYAADPTEVVNYVSKHDNQTLWDMISYKAAQEADLDTRVRMQAVSLATVMLGQGIAFDQQGSELL 480 (563)
T ss_dssp CEEEGGGSEETTEESCCBSSGGGEEECSCCSSSSCHHHHHHHHSCTTCCHHHHHHHHHHHHHHHHTSSSEEEEETTGGGT
T ss_pred HHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 66413234321243445578330434312578530013333257875349999999999999999816755877175247
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~t~~~~~~~y~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~~d~~sl~~~yr~Li~LRk~~pal 560 (563)
T d2fhfa5 481 RSKSFTRDSYDSGDWFNRVDYSLQDNNYNVGMPRSSDDGSNYDIIARVKDAVATPGETELKQMTAFYQELTALRKSSPLF 560 (563)
T ss_dssp CCCTTCSCCTTSHHHHHCCCTTCSCCSCSSSCCCHHHHGGGHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH
T ss_conf 76789865435854122456566756776557656777655433345554432323248899999999999999578853
Q ss_pred --C
Q ss_conf --9
Q 000235 1717 --A 1717 (1815)
Q Consensus 1717 --~ 1717 (1815)
.
T Consensus 561 ~~G 563 (563)
T d2fhfa5 561 TLG 563 (563)
T ss_dssp GCC
T ss_pred CCC
T ss_conf 389
|
| >d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex virus 1 [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Major capsid protein VP5 superfamily: Major capsid protein VP5 family: Major capsid protein VP5 domain: Major capsid protein VP5 species: Herpes simplex virus 1 [TaxId: 10298]
Probab=100.00 E-value=0 Score=42628.61 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~g~~v~~~~~p~~~~~~~f~~~~~~~~~~~~~~~~~k~~mtt~dfl~p~N~~L~lELHP~FDF~~~~~d~e~p~~~~ 80 (562)
T d1no7a_ 1 ANPYGAYVAAPAGPAADMQQLFLNAWGQRLAHGRVRWVAEGQMTPEQFMQPDNANLALELHPAFDFFVGVADVELPGGDV 80 (562)
T ss_dssp CCCGGGCCCCCCSCHHHHHHHHHTTSHHHHHSSCCSSCC-----------------CCCCCTTCEEECCCSSCCTTCCSS
T ss_pred CCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCC
T ss_conf 99877022689898599999999999873568987246541689899658998776525575001353023345676445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~p~~~~~~~at~Ri~~GNIP~PLaP~~F~eaRG~q~~~~~hv~~~aTl~~v~~T~~D~~YP~lfYvIEa~IHG~e~~F~~ 160 (562)
T d1no7a_ 81 PPAGPGEIQATWRVVNGNLPLALCPAAFRDARGLELGVGRHAMAPATIAAVRGAFDDRNYPAVFYLLQAAIHGSEHVFCA 160 (562)
T ss_dssp CCCSCCCCEEECCCSGGGSCTTTSCHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHCTTCCTHHHHHHHHSCSCHHHHHH
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 76654220134404447889888987789998999997437888899999998532888646899999987488999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~LIa~CI~sYw~nsg~LAFvNSf~MV~~I~t~LGG~i~~e~~~~YR~i~~~l~al~~~i~~~~l~g~~l~~e~~~~~~ 240 (562)
T d1no7a_ 161 LARLVVQCITSYWNNTRCAAFVNDYSLVSYVVTYLGGDLPEECMAVYRDLVAHVEALAQLVDDFTLTGPELGGQAQAELN 240 (562)
T ss_dssp THHHHHHHHHHHHHHSSCCSSTTCHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHTSCSCCCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 27999999999997629668974678999999864687759999999999999999999999846686001574789997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 naL~Dp~LlPPf~y~~~~l~~~~~~~r~r~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 320 (562)
T d1no7a_ 241 HLMRDPALLPPLVWDCDALMRRAALDRHRDCRVSAGGHDPVYAAACNVATADFNRNDGQLLHNTQARAADAADDRPHRGA 320 (562)
T ss_dssp BSTTCTTSCCSBCSSSHHHHHHHSSCTTTCCCCEETTBCCEEESCCCSSSCCTTCCSCEEECCCCSSSSSCCSSSCSSCH
T ss_pred HHHCCCCCCCCEECCCCHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHEECCCCCCCCCCCCCCCCCH
T ss_conf 66317677988533786076662154466766842687704555544321332334432201232234555568877734
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 e~~vL~KIfYYv~LPa~Tngh~CgmGvdf~~v~~~L~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~L~a~~~n~~~~~~r 400 (562)
T d1no7a_ 321 DWTVHHKIYYYVMVPAFSRGRCCTAGVRFDRVYATLQNMVVPEIAPGEECPSDPVTDPAHPLHPANLVANTVNAMFHNGR 400 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCEEEEECHHHHHHHHTCCCCCCCCTTSCCCCCTTTCTTSTTSGGGCCTTSHHHHHHHTT
T ss_pred HHHHHHHEEEEEEEEECCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHH
T ss_conf 66666322368975531598201267468989988621367766754457667011754555342310111356787655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 v~~~~~a~l~l~~~~~~~~e~T~~l~v~~~~D~~q~~~~t~~~~~~~~vL~nG~~~~~~~~~~~t~~~~~~FypvPfh~f 480 (562)
T d1no7a_ 401 VVVDGPAMLTLQVLAHNMAERTTALLCSAAPDAGANTASTTNMRIFDGALHAGILLMAPQHLDHTIQNGDYFYPLPVHAL 480 (562)
T ss_dssp CCCCHHHHHGGGGGGTSCCCCCCEEEEEECCSSCSSCC---CCCEEEEEESSEEEECSCCCTTSTTTTTSSEEECCSBTT
T ss_pred HHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHCCCCCCCEEEEEEEEECEEEECCHHHHHHHCCCCEEEECCCHHH
T ss_conf 30570799999999864200107888641688054217888836652211503444240654201021454675651442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ysdp~~i~~~~~~~p~~~~~~~~~P~vP~~l~aEY~~whRsP~~~Y~~~c~~~~~sls~aL~amh~KLSPva~~~Q~k~~ 560 (562)
T d1no7a_ 481 FAGADHVANAPNFPPALRDLSRQVPLVPPALGANYFSSIRQPVVQHVRESAAGENALTYALMAGYFKISPVALHHQLKTG 560 (562)
T ss_dssp BBCHHHHHTSTTCCTTTHHHHTSSCCCCGGGCCGGGSSSCHHHHHHHHHCCCCHHHHHHHHHHHTBCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 15938999865258888850688999985889999998637399886526897458999999985341899999998514
Q ss_pred -C
Q ss_conf -9
Q 000235 1717 -A 1717 (1815)
Q Consensus 1717 -~ 1717 (1815)
+
T Consensus 561 iH 562 (562)
T d1no7a_ 561 LH 562 (562)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain {Pseudomonas cellulosa [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: alpha-D-glucuronidase/Hyaluronidase catalytic domain domain: alpha-D-glucuronidase catalytic domain species: Pseudomonas cellulosa [TaxId: 155077]
Probab=100.00 E-value=0 Score=42561.54 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 i~~R~lNhWDNldgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINg~vlNNVNa~~~lLt~~~l~~v~~iAd~ 80 (561)
T d1h41a1 1 LQHRVVNHWDNLNRVVERGYAGLSLWDWGSLPNYLAPRYTDYARINASLGINGTVINNVNADPRVLSDQFLQKIAALADA 80 (561)
T ss_dssp CSEEEEECCBCTTSCBTTCCSCSCSCCTTTTTTCCCHHHHHHHHHHHTTTCCEEECSCSSCCGGGGSHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 96111021337898663265665510359966533088999999986237643886441477010787778899999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 fRpYGIkv~LS~nFasP~~lGgL~TaDPLDp~V~~WW~~k~~eiY~~IPDfgGflVKAnSEGqPGP~~YgRthAdGANml 160 (561)
T d1h41a1 81 FRPYGIKMYLSINFNSPRAFGDVDTADPLDPRVQQWWKTRAQKIYSYIPDFGGFLVKADSAGQPGPQGYGRDHAEGANML 160 (561)
T ss_dssp HGGGTCEEEEEECTTHHHHTTSCSCCCTTSHHHHHHHHHHHHHHHHHCTTCCEEEECCSBTTBCCGGGGTCCHHHHHHHH
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 63144169999743687546898878999868999999999999985887456477337899999554587611356689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 A~Al~P~GGiV~wRaFVY~~~~~DRakaAyd~F~pLDG~F~dNVivQiKnGPiDFQ~REP~sPLFgam~~T~~~~E~QIT 240 (561)
T d1h41a1 161 AAALKPFGGVVFWRAFVYHPDIEDRFRGAYDEFMPLDGKFADNVILQIKNGPIDFQPREPFSALFAGMSRTNMMMEFQIT 240 (561)
T ss_dssp HHHHGGGTCEEEEEC--------CGGGHHHHHHGGGTTCSCTTEEEEEESSSSSSCSSCCCCTHHHHCSSSEEEEEEECS
T ss_pred HHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCEEEEEEC
T ss_conf 99736679879999761479830688989975358887644566999635875663168886443177777613677611
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 QEYlGqq~Hl~YL~PlwkE~L~fDt~~~g~gs~V~~iv~G~~~~~~~~g~agV~NiG~d~nWtGh~laqANlYafGRLAW 320 (561)
T d1h41a1 241 QEYFGFATHLAYQGPLFEESLKTETHARGEGSTIGNILEGKVFKTRHTGMAGVINPGTDRNWTGHPFVQSSWYAFGRMAW 320 (561)
T ss_dssp CTTTTTTTSCCCCHHHHHHHHTCBCCTTSTTCBHHHHHHTSSSCCSCCEEEEECCCCSSTTSSSSTTHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 10237513400111688988624320148998131020464137766537987504778886665345556555422014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 dp~~~se~I~~EW~rlTF~~d~~vv~~i~~m~m~Sw~aye~Yt~pLGl~~~~~~~~HYGP~P~~~~~~~~~W~~~yYHrA 400 (561)
T d1h41a1 321 DHQISAATAADEWLRMTFSNQPAFIEPVKQMMLVSREAGVNYRSPLGLTHLYSQGDHYGPAPWTDDLPRADWTAVYYHRA 400 (561)
T ss_dssp CTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTCCTTCCCCBCTTTCSSBCTTCCCCSSGGGSSHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 89899999999999854489813788999999861899985278754513426987689982226887788876332216
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 d~~gIG~DRT~tGtg~~~QY~~~~a~~ye~~~tcPdelLLwFHHVpy~h~L~SGkTviq~~yd~h~~Gv~~v~~~~~~W~ 480 (561)
T d1h41a1 401 SKTGIGFNRTKTGSNALAQYPEPIAKAWGDLNSVPEDLILWFHHLSWDHRMQSGRNLWQELVHKYYQGVEQVRAMQRTWD 480 (561)
T ss_dssp CSSEECCCCSTTTTCGGGGSCHHHHHHHHSTTTSCGGGGGGTCCEETTCBCTTSCBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78773788578888850127979999727802394677410014886666489878999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~L~g~iD~~rf~~V~~rL~~Q~~~A~~WRDai~~yf~~~Sgip~p~~~e~~~~~L~~yk~~~~~py~~~P~e~as~~~ai 560 (561)
T d1h41a1 481 QQEAYVDAARFAQVKALLQVQEREAVRWRNSCVLYFQSVAGRPIPANYEQPEHDLEYYKMLARTTYVPEPWHPASSSRVL 560 (561)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCCCSSCHHHHHHHHHHSCCCCSSSGGGGCCCC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 86552899999999999999998899999999999998629988566677767766620025567789987555667346
Q ss_pred C
Q ss_conf 9
Q 000235 1717 A 1717 (1815)
Q Consensus 1717 ~ 1717 (1815)
.
T Consensus 561 ~ 561 (561)
T d1h41a1 561 K 561 (561)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: Phosphoglucose isomerase, PGI domain: Phosphoglucose isomerase, PGI species: Leishmania mexicana [TaxId: 5665]
Probab=100.00 E-value=0 Score=42553.29 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~l~aW~~L~~~~~~~~~~~l~~lf~~d~~R~~~~s~~~~~~~~~~~l~~D~Sk~~i~~~~~~~L~~la~~~~ 80 (561)
T d1q50a_ 1 GVTDSSLLNLPAWKRLQSLYEKYGNDSILSHFEKDHQRFQRYSIEIDLHSDDNFLFLDYSKSHINDEIKDALVALAEERG 80 (561)
T ss_dssp CCBCCTGGGCHHHHHHHHHHHHHTTSCHHHHHHHCTTHHHHTEEEEECSSTTCEEEEECCSSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHCEEEHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99989875698999999999875588289998659578974012120467789889981799889999999999999788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 l~~~~~~lf~Ge~iN~TE~R~vlH~aLR~~~~~~~~~~~~~~~~~v~~~l~km~~f~~~i~~g~~~g~~g~~~~~vv~iG 160 (561)
T d1q50a_ 81 VRAFAKAMFDGQRVNSTENRAVLHVALRNRSNRPIIVDGKDVMSDVNNVLAQMKDFTERVRSGEWKGQTGKSIYNIVNIG 160 (561)
T ss_dssp HHHHHHHHHTTCCCBTTTTBCCCHHHHTCTTCCCCEETTEEHHHHHHHHHHHHHHHHHHHHTTCSBCTTSCBCCEEEEEC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEEEC
T ss_conf 19999999678976899982337699949988887576166689999999999999999983112332211200124534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 IGGS~LGp~~~~~al~~~~~~~~~~~fvsn~D~~~l~~~l~~Ldp~~Tlfiv~SKSftT~ETl~n~~~~r~wl~~~~~~~ 240 (561)
T d1q50a_ 161 IGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIFIIASKTFTTQETLTNAMSARNALMSYLKEN 240 (561)
T ss_dssp CTHHHHHHHHHHHHTGGGSCSSSEEEEECCSSTHHHHHHHTTSCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77243999999999754411785166347863899999862478654368851687665227889999999999974541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~h~vaiT~~~~~~~~~g~~~~~if~~~d~VGGRySv~SaVGL~~a~~~G~~~~~~lL~GA~~md~~f~~~~ 320 (561)
T d1q50a_ 241 GISTDGAVAKHFVALSTNTEKVREFGIDTVNMFAFWDWVGGRYSVWSAIGLSVMLSIGYDNFVEFLTGAHVMDNHFASTP 320 (561)
T ss_dssp TCCCTTHHHHHEEEECSCHHHHHHTTCCGGGEECCCTTSCGGGCTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 56605556654011026459999615453207634455320210145222899998099529999989999888641176
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~N~p~~lal~~~~~~~~~~~~~~~ilpY~~~L~~f~~wlqQL~mESlGK~v~~~g~~~~~~tgp~~~g~~Gt~dQHS~ 400 (561)
T d1q50a_ 321 TEQNLPMMLALVGIWYNNFFGSETQAVLPYDQYLWRLPAYLQQLDMESNGKGVTKKSGAVAVQTGPIVFGEAGTNGQHAF 400 (561)
T ss_dssp GGGCHHHHHHHHHHHHHHTSCCCEEEEEESSGGGTTHHHHHHHHHHHHHCCSBCTTSCBCSSCCCCEEECCCSSSCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 64579999999986676505864101105753253599999998863367676667776567766543577787764016
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~Ql~~qG~~~~~~~fi~~~~~~~~~~~~~~~l~~n~~aq~~al~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GnrP 480 (561)
T d1q50a_ 401 YQLIHQGTKIIPCDFIGCVQTQNRVGDHHRTLMSNFFAQTEALMVGKNAEEVRQELVKSGMSGDAIENMIPHKTFTGSRP 480 (561)
T ss_dssp HHHHHHSSSCCCEEEEEESSCSCCCTTHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHTTCCTTTTTTTHHHHCBCCCCC
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHCCCCCC
T ss_conf 77877436666401123100367654421434554666567664366799999999881677666751011331279997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 s~~I~l~~l~p~~lG~Lial~E~~t~v~g~l~~INpFDQpGVElGK~la~~il~~~~~~~~~~~~d~st~~li~~~~~~~ 560 (561)
T d1q50a_ 481 SNSILVNALTPRALGAIIAMYEHKVLVQGAIWGINSYDQWGVELGKVLAKSILPQLKSGNIVSDHDGSTNGLINMFNTRA 560 (561)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHHHHTCCTTCCGGGHHHHHHHHHHGGGCCTTCCCCSSCHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 17999788999999999999999999988741858899865999999999999985169998889858999999998506
Q ss_pred C
Q ss_conf 9
Q 000235 1717 A 1717 (1815)
Q Consensus 1717 ~ 1717 (1815)
.
T Consensus 561 ~ 561 (561)
T d1q50a_ 561 H 561 (561)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PFL-like glycyl radical enzymes superfamily: PFL-like glycyl radical enzymes family: Class III anaerobic ribonucleotide reductase NRDD subunit domain: Class III anaerobic ribonucleotide reductase NRDD subunit species: Bacteriophage T4 [TaxId: 10665]
Probab=100.00 E-value=0 Score=42542.44 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~~~r~~~a~~~sk~~~~~ilp~~i~~AH~~GdiHIHDl~~~~~~p~~~C~~~~l~~ll~~Gf~~~~~~~~ppk~~ 80 (561)
T d1hk8a_ 1 DSRVFPTQRDLMAGIVSKHIAKNMVPSFIMKAHESGIIHVHDIDYSPALPFTNCCLVDLKGMLENGFKLGNAQIETPKSI 80 (561)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTSEEETTTTTTTTSCCCCCEECCHHHHHHSCEEETTEEECCCSSH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCCCH
T ss_conf 97641258899999999999987499999999974996561764015688871200359999964868999757999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~a~~~~~~~l~~~q~e~aGaqa~~~fd~~lAPfv~~~~~~~~~~~~~~~~~d~~~~a~~~~~~~v~q~~Q~f~~nlN~~ 160 (561)
T d1hk8a_ 81 GVATAIMAQITAQVASHQYGGTTFANVDKVLSPYVKRTYAKHIEDAEKWQIADALNYAQSKTEKDVYDAFQAYEYEVNTL 160 (561)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEETTHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 99999999999999887637862777777613578773899999999865567788999876779999887622424650
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~r~g~Q~pFt~it~g~~~~~~~r~i~~a~l~~~~~G~~~~g~~~~FP~~~~~~~~~~~~~~~~~~~dl~~~~~~~~ak~~ 240 (561)
T d1hk8a_ 161 FSSNGQTPFVTITFGTGTDWTERMIQKAILKNRIKGLGRDGITPIFPKLVMFVEEGVNLYKDDPNYDIKQLALECASKRM 240 (561)
T ss_dssp CCTTSSCCCEEEEECCCCSHHHHHHHHHHHHHHHHCBTTTTBCCSCSEEEEEECTTTTSSTTSTTHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 22567688547898569985889989999999970466688888687227776247777899964178999999998865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~p~f~n~~~~~~~~~~~~~~~~m~cR~~l~~~~~~~g~~~~~g~gsigvVTINLPRla~~a~~~~~~d~~~F~~~L~~~m 320 (561)
T d1hk8a_ 241 YPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEILDGRNNLGVVTLNLPRIALDSYIGTQFNEQKFVELFNERM 320 (561)
T ss_dssp CCEEEEHHHHHHHHTCSSCCCCBTTTBCCCCCBCTTSCBCCTTCBEEEEEEEEHHHHHHTTEETTEECHHHHHHHHHHHH
T ss_pred CCCHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 83144200220113788643467626552012025787743122312479965588898740133457999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~la~~~L~~r~~~l~~~~~~~~p~l~~~g~~~~~~~~~~~~~~~~~~~~~t~~~G~iGl~E~~~~~g~~fa~~il~~m~~ 400 (561)
T d1hk8a_ 321 DLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHELNILVGRDIGREILTKMNA 400 (561)
T ss_dssp HHHHHHHHHHHHHTTTCBGGGCHHHHTSSTTSSCCCTTSBTHHHHTTTTSEEEEEEECHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999865531245767477665436766326777406501321030457787789999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~etG~~~nleaTPAEsts~RfAk~D~~~y~~i~~~~d~~yYTNS~hlPv~~~~d~~eki~~e~~~~~~~tGG~I 480 (561)
T d1hk8a_ 401 HLKQWTERTGFAFSLYSTPAENLCYRFCKLDTEKYGSVKDVTDKGWYTNSFHVSVEENITPFEKISREAPYHFIATGGHI 480 (561)
T ss_dssp HHHHHHHHHSCEEEEEECCCTTHHHHHHHHHHHHHCCCTTTTTTSCCCCTTCCCTTSCCCHHHHHHHHHHHHTTCTTBCC
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999998799136884033146699999999867876787878766786607889999989999741333330276489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 481 ~hv~l~e~~~n~~a~~~lv~~~~~~i~Yf~in~~~~~C~~Cg~~~~~~~~~~~~~CP~CGs~~~~~~~~~~Rv~GYL~~~ 560 (561)
T d1hk8a_ 481 SYVELPDMKNNLKGLEAVWDYAAQHLDYFGVNMPVDKCFTCGSTHEMTPTENGFVCSICGETDPKKMNTIRRTCAYLGNP 560 (561)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHCSEEEEECCEEEETTTCCCSCCEECSSSEECSSSCCCCGGGEEEEBCSSSSCBCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 99877887689999999999998679837747798547788875864357778529389899877402898746327899
Q ss_pred C
Q ss_conf 9
Q 000235 1717 A 1717 (1815)
Q Consensus 1717 ~ 1717 (1815)
-
T Consensus 561 ~ 561 (561)
T d1hk8a_ 561 N 561 (561)
T ss_dssp C
T ss_pred C
T ss_conf 8
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=100.00 E-value=0 Score=42471.20 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~W~~~~g~~~~~r~s~~~~I~~~nv~~L~~aW~~~~~~~~~~~stPiv~~g~vyv~t~~~~v~A 80 (560)
T d1kv9a2 1 AGVDEAAIRATEQAGGEWLSHGRTYAEQRFSPLKQIDASNVRSLGLAWYMDLDNTRGLEATPLFHDGVIYTSMSWSRVIA 80 (560)
T ss_dssp CCBCHHHHHHTTTCCSCBCBTTBSTTCCCEECCCSSCTTTGGGEEEEEEEECSCCSCCCCCCEEETTEEEEEEGGGEEEE
T ss_pred CCCCHHHHHCCCCCCCCCHHHCCCCCCCCCCCHHHCCHHHHHCCEEEEEEECCCCCCCEECCEEECCEEEEECCCCEEEE
T ss_conf 98753454146778885432089975686685221696586114388899789999857699999999999789995999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 lDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v 160 (560)
T d1kv9a2 81 VDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV 160 (560)
T ss_dssp EETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE
T ss_pred EECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEE
T ss_conf 96899987988779877644544322465357504688499973898799997778957730576675540454320045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~ 240 (560)
T d1kv9a2 161 VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE 240 (560)
T ss_dssp ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT
T ss_pred ECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 06851036531100135538999778862776641003455677643112234566666531002678875565521434
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~ 320 (560)
T d1kv9a2 241 LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA 320 (560)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEC
T ss_conf 68036447887435556424667765453036873377642158871036533234565124420031179602566625
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~ 400 (560)
T d1kv9a2 321 PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQ 400 (560)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 76536999846888243534446544334557221321000123223355056535666545656316688871653510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~ 480 (560)
T d1kv9a2 401 EVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ 480 (560)
T ss_dssp ECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCEEEECCCEEEEECCCCC
T ss_conf 16620001466644444423466766666788766666468870778837310257888877405987998999778981
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~~~~~~ 560 (560)
T d1kv9a2 481 MHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQLPPPA 560 (560)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCCCCCCC
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 99999999858279989999551677999899999999917786545566643111457889889999829988798898
|
| >d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Cobalamin (vitamin B12)-dependent enzymes family: Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain domain: Methylmalonyl-CoA mutase alpha subunit, domain 1 species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=100.00 E-value=0 Score=42248.37 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~fp~~~~~~W~~~~~~~lkg~~~~T~eGi~i~PlYt~ed~~~~~~~~~~PG~~Pf~RG~~~~~~~~~~ 80 (557)
T d7reqa1 1 LPRFDSVDLGNAPVPADAARRFEELAAKAGTGEAWETAEQIPVGTLFNEDVYKDMDWLDTYAGIPPFVHGPYATMYAFRP 80 (557)
T ss_dssp CCCTTSCCCCCCCCCTTHHHHHHHHHHHHTCCSCEECTTSCEECSCCCGGGGTTCCCTTCCTTSTTCTTCSSSSGGGTCC
T ss_pred CCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99800201457899985799999998762169987197788368874854423354334689988735687756556899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 W~i~q~~~~~~~~~~N~~~l~~L~~G~t~l~l~fd~~t~~g~D~d~~~~~~~vg~~Gv~~~s~~dl~~ll~gI~L~~~~v 160 (557)
T d7reqa1 81 WTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDNPRVAGDVGMAGVAIDSIYDMRELFAGIPLDQMSV 160 (557)
T ss_dssp CEECCEECCSCHHHHHHHHHHHHHTTCCSEEEEBCHHHHTTCCTTCGGGGGGTTTSSBCCCSHHHHHHHTTTCCTTTCCE
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE
T ss_conf 81477668999999999999998689862698612642237588852321543235511387888999972688445513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~l~~~~~~~~~~~~~~~~a~~~~~~~~~l~g~~~~Dpl~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~vdg~ 240 (557)
T d7reqa1 161 SMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYPPQPSMRIISEIFAYTSANMPKWNSISISGY 240 (557)
T ss_dssp EEECSTTHHHHHHHHHHHHHHTTCCGGGCCEEECCCCHHHHHTTCCCCSCHHHHHHHHHHHHHHHHHHCTTEECEEEECH
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 54357426999999999887413678876323068816689848986788178899999999987652047751774144
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~eAGAt~~QELA~~LA~~~~Yl~~~~~~Gl~~~~~~~~i~f~~~~g~d~F~eIAK~RA~R~LWa~i~~~~g~~~~~~~ 320 (557)
T d7reqa1 241 HMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAPRLSFFWGIGMNFFMEVAKLRAARMLWAKLVHQFGPKNPKSM 320 (557)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHGGGEEEEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCSSGGGG
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 26308998899999999999999976531599889862105899954860989999999999999999998577653111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~a~ts~~~~t~~dp~~N~lR~T~~~~aA~~GGa~sl~~~~~d~a~~~p~~~s~riA~n~q~IL~~Es~l~~v~DP~ 400 (557)
T d7reqa1 321 SLRTHSQTSGWSLTAQDVYNNVVRTCIEAMAATQGHTQSLHTNSLDEAIALPTDFSARIARNTQLFLQQESGTTRVIDPW 400 (557)
T ss_dssp CCCEEEEECSTTCCSSSTTHHHHHHHHHHHHHHHTTCSEEECCCTTTTTSSCCHHHHHHHHHHHHHHHHTSCCSSSSSTT
T ss_pred CEEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 42575205754301168521099999999999970267552588247654882789999999999999985721024453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~GSy~iE~LT~~l~~~aw~~f~~IE~~GG~~~al~~G~~q~~I~~sa~~~~~~i~~~~~~iVGVN~f~~~~e~~~~~~~i 480 (557)
T d7reqa1 401 SGSAYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKV 480 (557)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTHHHHHHHHHHHHHHHHHHHTSSCCBTTTBSCCSSCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 00378999999999999999999980027999987395999999999999999976997699860799878887762346
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 481 d~~~~~~~Q~~rL~~~r~~Rd~~~v~~aL~~L~~~A~~~~~~~~~~Nlmp~~Ieavka~aTlGEI~~aLr~vfG~~t 557 (557)
T d7reqa1 481 DNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSDALEKVFGRYT 557 (557)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCCTTCGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 85778999999999999875999999999999999743766777776169999999749879999999999739049
|
| >d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: Phosphoglucose isomerase, PGI domain: Phosphoglucose isomerase, PGI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=42168.05 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~t~~~~w~~L~~~~~~~~~~~~l~~lf~~d~~R~~~fs~~~~~~~~~l~~D~Sk~~i~~~~~~~l~~la~~~~l~~~~ 80 (556)
T d1iata_ 1 AALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAAR 80 (556)
T ss_dssp CHHHHCHHHHHHHHHHHHHGGGCCHHHHHHHCTTHHHHTEEEEECSSCEEEEECCSSSCCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 98757899999999998743888789997509347871724302577888998179978999999999999978809999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~lf~G~~iN~TE~R~vlH~aLR~~~~~~~~~~~~~i~~~v~~~l~~m~~f~~~i~~g~~~g~~gk~~~~VV~iGIGGS~ 160 (556)
T d1iata_ 81 ERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSD 160 (556)
T ss_dssp HHHHTTCCCBTTTTBCCCHHHHTCTTCCCCEETTEESHHHHHHHHHHHHHHHHHHHHTCSBCTTSCBCCEEEEECCGGGT
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEECCCCCC
T ss_conf 99858997789998223669994999898767732457999999999999999862211114554554069996477431
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 LGp~~l~~al~~~~~~~~~~~fv~n~D~~~~~~~l~~l~~~~Tlfiv~SKSftT~ET~~n~~~~~~wl~~~~~~~~~~~~ 240 (556)
T d1iata_ 161 LGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVAK 240 (556)
T ss_dssp HHHHHHHHHTGGGCTTCCEEEEECCSSHHHHHHHHTTCCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 31899999963432465278866980178999999734875438997168877177899999999999984477675655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~avt~~~~~~~~~g~~~~~if~~~~~VGGRfSv~SavGL~~a~~~G~d~~~~ll~Ga~~md~~f~~~~~~~N~p~~la 320 (556)
T d1iata_ 241 HFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLA 320 (556)
T ss_dssp HEEEEESCHHHHHHHTCCGGGEEECCTTSCGGGCTTTGGGHHHHHHHCHHHHHHHHHHHHHHHHHHHHSCGGGCHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCCCEEEHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 42102450799997401103540000255420032312468999994885899997679999887512522335889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~~~~~~~~~~~~~~vilpY~~~L~~f~~w~qQL~mESlGK~~~~~G~~~~~~tg~i~~g~~Gt~~QHS~~Ql~~qG~~~ 400 (556)
T d1iata_ 321 LLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKM 400 (556)
T ss_dssp HHHHHHHHTSCCCEEEEEESCGGGTTHHHHHHHHHHHHHCCCBBTTSCBCSSCCCCEEECCCTTGGGGTTHHHHHHSSCC
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99998998539860366335600123899999874347752234567745678655434566765430046576531455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~fi~~~~~~~~~~~~~~~~~l~~n~~aq~~al~~g~~~~~~~~~~~~~~~~~~~~~~l~~h~~~~GnrPs~~I~l~~ 480 (556)
T d1iata_ 401 IPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFTK 480 (556)
T ss_dssp CCEEEEEEEECSCCHHHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHTTCCHHHHHHHGGGGCBCCCCCEEEEEEEE
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 75201231145666666532166664366657998748869999999997234556565302100026998727999788
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 l~~~~LG~Lial~E~~t~v~g~l~~INpFDQpGVE~gK~lak~il~~l~~~~~~~~~d~st~~l~~~~~~~~~~~~ 556 (556)
T d1iata_ 481 LTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDASTNGLINFIKQQREARV 556 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTBCTTCCGGGHHHHHHHHHHHHHTSSSCCCCSSCHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999999999608888997559999999999999843799988889799999999998634159
|
| >d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prokaryotic type I DNA topoisomerase superfamily: Prokaryotic type I DNA topoisomerase family: Prokaryotic type I DNA topoisomerase domain: Topoisomerase "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=42162.00 Aligned_cols=1 Identities=0% Similarity=-0.160 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~LiIaEKPs~ak~Ia~~Lg~~~~k~~~~~~~~~~~~~~~~~~vt~~~GHl~~L~~p~~~~~~~~~~~~~p~~ 80 (556)
T d1gkub3 1 QEFDLIKPALFIVESPTKARQISRFFGKPSVKVLDGAVVYEIPMQKYVLMVTASIGHVVDLITNRGFHGVLVNGRFVPVY 80 (556)
T ss_dssp GGCCCCEEEEEEESCHHHHHHHHGGGEECEEEEETTEEEEEEECSSEEEEEEECCSCSEEECSSSSTTSSCCSSSCCCEE
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95244687099999889999999870998625667754323346786499998057310089855445545566767544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~l~k~ad~ii~AtD~DREGE~I~~~i~~~~~~~~~v~R~~~ 160 (556)
T d1gkub3 81 ASIKRCRDCGYQFTEDRESCPKCGSENVDNSRSRIEALRKLAHDAEFVIVGTDPDTEGEKIAWDLKNLLSGCGAVKRAEF 160 (556)
T ss_dssp EECC------------------------CCHHHHHHHHHHHHHHHSEEEECCCSSHHHHHHHHHHHHHHTTSSEEEECCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 32111232111233331113311333374079999999999860898998878873311999999998637897379996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~t~~~I~~a~~~l~~~~~~l~~a~~aR~~~D~~iG~~~s~~l~~~~~~~~lS~GRVQtPtL~lVv~Re~ei~~~~~~~ 240 (556)
T d1gkub3 161 HEVTRRAILEALESLRDVDENLVKAQVVRRIEDRWIGFVLSQKLWERFNNRNLSAGRAQTLVLGWIIDRFQESRERRKIA 240 (556)
T ss_dssp SBCSHHHHHHHHTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCTTHHHHHHHHHHHHTGGGSEEEEE
T ss_pred HHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 21058988757752145403456789887688888161268899998733454533002405154463787653011124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~pp~pf~~s~Lq~~a~~~~~~s~~~tl~iaQ~LYe~g~ITYpRTDs~~ls 320 (556)
T d1gkub3 241 IVRDFDLVLEHDEEEFDLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVKQTMQIAQELFENGLITYHRTDSTRVS 320 (556)
T ss_dssp EETTTTEEESCCCSEEEEEEEEEEEEEEEECCCCCBCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTTSBBCSSCCCCCCC
T ss_pred EEEHHHHHHHHHHHHCCCEEEEEEECEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCH
T ss_conf 43024677777665223413578843174279998763389998745336238899999866502654203687532201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~~~~~~~~~~l~~~e~~lY~lI~~rflas~~~~~~~~ 400 (556)
T d1gkub3 321 DVGQRIAKEYLGDDFVGREWGESGAHECIRPTRPLTRDDVQRLIQEGVLVVEGLRWEHFALYDLIFRRFMASQCRPFKVV 400 (556)
T ss_dssp HHHHHHHHHHHTTSBCCCCSCSCCSCCCBCBSSSCCHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHHHTTBCCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 56664200012210011233430122111134455420124678721111112789999985544544567653763015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elp~~~~~~~~e~k~t~pp~ryTEasLI~~ME~~GIGTpATrA~ 480 (556)
T d1gkub3 401 VKKYSIEFDGKTAEEERIVRAEGRAYELYRAVWVKNELPTGTFRVKAEVKSVPKVLPFTQSEIIQMMKERGIGRPSTYAT 480 (556)
T ss_dssp EEEEEEEETTEEEEECCEEEEESHHHHHSCCSCCCCCCCCEEEEEEBCCEEEESSCCBCHHHHHHHHHHHTCCCTTTHHH
T ss_pred EEEEEEEECCEEEEEEEEEEEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHH
T ss_conf 88899841653422017998501255214201101101444202334522388989989899999998589996115799
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 481 IIe~L~~R~Yv~~k~~~l~pT~~G~~li~~L~~~~~~l~~p~~Ta~~E~~Ld~I~~G~~~~~~~l~~~~~~~~~id 556 (556)
T d1gkub3 481 IVDRLFMRNYVVEKYGRMIPTKLGIDVFRFLVRRYAKFVSEDRTRDLESRMDAIERGELDYLKALEDMYAEIKSID 556 (556)
T ss_dssp HHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHSCCGGGSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCEEEECCEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9998973895994499881516799999999975355349679999999999998699879999999999865489
|
| >d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1 [TaxId: 10658]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Adsorption protein p2 superfamily: Adsorption protein p2 family: Adsorption protein p2 domain: Adsorption protein p2 species: Bacteriophage prd1 [TaxId: 10658]
Probab=100.00 E-value=0 Score=42104.09 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 a~~~vpklg~fp~~av~didnvp~dss~tgsrwlpsiy~g~ny~~ggpq~l~a~~~~fds~~rlpynprt~~npagncaf 80 (555)
T d1n7va_ 1 ANFNVPKLGVFPVAAVFDIDNVPEDSSATGSRWLPSIYQGGNYWGGGPQALHAQVSNFDSSNRLPYNPRTENNPAGNCAF 80 (555)
T ss_dssp CEEEECEEEECCEEEEEEECSSCCCBTTTCCSSSCBTTCGGGEECCSSEEEEEEEECCCTTSEEECCBCBTTBTTCCBCS
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 95356645555425888636785566665564241032256544688477521222556677578898767897753126
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~fnpfgqyisnissaqsvh~riygid~n~eplf~pnaasitnggnptmsqd~~yhnigpin~aykaeifrpvnplpmsdt 160 (555)
T d1n7va_ 81 AFNPFGQYISNISSAQSVHRRIYGIDLNDEPLFSPNAASITNGGNPTMSQDTGYHNIGPINTAYKAEIFRPVNPLPMSDT 160 (555)
T ss_dssp CCCCEEECCCSHHHHHHHHHHHTTSCTTCCCCCEECHHHHHGGGTTCCEECTTSEEETTEEESEEEEEEEESSCCCCEEE
T ss_pred EECCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 51746655313304566676510668887746488702102799965434467643465412555653155787765667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~pdpetlepgq~~p~ik~dgiy~~sgia~fifd~pvtepnpnwpplppp~ipiiyp~palgigaaaaygfgyqvt~y~we 240 (555)
T d1n7va_ 161 APDPETLEPGQTEPLIKSDGVYSNSGIASFIFDRPVTEPNPNWPPLPPPVIPIIYPTPALGIGAAAAYGFGYQVTVYRWE 240 (555)
T ss_dssp EECTTTCCEEEECCEECTTSCCBCCCCEECBSSSCEEEECTTTTTSSCSEEEEECCBGGGTEEEEEEEEEEEEEEEEECC
T ss_pred CCCCCCCCCCCCCCEEECCCEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCEEEEEEEEC
T ss_conf 99934358876211062376242676057870577788998999998984634435742341145541564078999841
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~ipvefiadp~tcpa~pttdkviirtt~lnpeg~pcay~~~i~lvrq~~npmnavagrlvp~v~di~vdifltgkff~l~ 320 (555)
T d1n7va_ 241 EIPVEFIADPETCPAQPTTDKVIIRTTDLNPEGSPCAYEAGIILVRQTSNPMNAVAGRLVPYVEDIAVDIFLTGKFFTLN 320 (555)
T ss_dssp CCCCCC----------------------CCSSCCCCCCCSSCEEEECSSCTTSEEEECCEEEEEEEEEEEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCHHHHEEEEEEEECCEEEEC
T ss_conf 37625443834488998765379983256889985435773499963699335543124413001067789613234206
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 pp~ritnnyfad~~v~e~tvt~gn~~~~~~~~y~~vy~tdg~g~a~~fi~~gg~g~sali~lqd~~v~d~l~ys~pls~g 400 (555)
T d1n7va_ 321 PPLRITNNYFADDEVKENTVTIGNYTTTLSSAYYAVYKTDGYGGATCFIASGGAGISALVQLQDNSVLDVLYYSLPLSLG 400 (555)
T ss_dssp CCEEEEEEECCTTTCBCCEEEESCCCSEEEECSEEEEEECSSSEEEEEEESSSSEEEEEEEEETTEEEEEEEEEECGGGT
T ss_pred CCEEECCCCCCCCCCCCCEEEECCEECCHHHEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCHHHEEEEECCEECC
T ss_conf 86460156335442011158862311100013457785167774358884287560026884267400103352203036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 gs~~~~~ew~ann~g~~p~s~g~~k~~l~eiprr~leai~pq~~pg~~d~f~ld~s~~yasfssfigy~~~ayyvaga~t 480 (555)
T d1n7va_ 401 GSKAAIDEWVANNCGLFPMSGGLDKTTLLEIPRRQLEAINPQDGPGQYDLFILDDSGAYASFSSFIGYPEAAYYVAGAAT 480 (555)
T ss_dssp TCHHHHHHHHHHHHSCCCTTSCCEESSSEEEEHHHHHCSCCSCCTTTTCEEEETTCTTSCTTCCCEEEEETTEEEEEEEC
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCHHHEECCCHHHHHHCCCCCCCCCCCEEEECCCCCEEEHHHHCCCCHHHEEEECCEE
T ss_conf 87761788874267621013776701301055545630597668984435986165550002333166223224404526
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 481 fmdvenpd~iifilr~g~gwy~c~i~dal~i~d~e~dsvdyfa~~ggvmfigsaryteggdplpikyraiip~lp 555 (555)
T d1n7va_ 481 FMDVENPDEIIFILRNGAGWYACEIGDALKIADDEFDSVDYFAYRGGVMFIGSARYTEGGDPLPIKYRAIIPGLP 555 (555)
T ss_dssp CSSTTSCCEEEEEETTSSCEEEEECHHHHBCSSSCBCCCCEEEEETTEEEEEECCBCTTCCBCBCEEEEEEECCC
T ss_pred EEECCCCCEEEEEEECCCCEEEEECCCCEECCCCCCCCEEEEEECCCEEEEEEEEECCCCCCCCEEEEEECCCCC
T ss_conf 740578863899996698257730454023058565623136641744898535313789866425245346799
|
| >d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Ascophyllum nodosum [TaxId: 52969]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acid phosphatase/Vanadium-dependent haloperoxidase superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase family: Haloperoxidase (bromoperoxidase) domain: Haloperoxidase (bromoperoxidase) species: Ascophyllum nodosum [TaxId: 52969]
Probab=100.00 E-value=0 Score=42089.44 Aligned_cols=1 Identities=0% Similarity=0.071 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~c~~~~~~~~~~~p~~R~~~a~~~R~~aa~~~~~~~~p~~~~n~~e~~y~~~ftKgLpHn~~g~vd~~~y~~l~~ai~~g 80 (555)
T d1qi9a_ 1 TCSTSDDADDPTPPNERDDEAFASRVAAAKRELEGTGTVCQINNGETDLAAKFHKSLPHDDLGQVDADAFAALEDCILNG 80 (555)
T ss_dssp CCSSCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCGGGBCCTTSCBCTTSCBCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 97666544588886788999999999999986426889867799657778640458998867873999999999998648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~e~v~lg~~~g~~~~kl~nP~ag~a~dl~Gpd~~~~tmppaP~l~S~elAaEmaEvYwmALlRDvpF~~~~~~~~~ 160 (555)
T d1qi9a_ 81 DLSICEDVPVGNSEGDPVGRLVNPTAAFAIDISGPAFSATTIPPVPTLPSPELAAQLAEVYWMALARDVPFMQYGTDDIT 160 (555)
T ss_dssp CHHHHTTSCCSCCSCCGGGSEECTTTTCCCCSSSSCTTSCCCCCCCCTTSHHHHHHHHHHHHHHHHTTSBGGGTTTCHHH
T ss_pred CHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCHHH
T ss_conf 83443223146877762010137776336861158735530799999898889999999999998536887660786689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~aa~~L~~l~~f~~~~~~~~~~~g~~~~~~~LFRg~~pG~~~GPyvSQFll~di~~Ga~~i~q~~r~~~p~~DyMt~~~ 240 (555)
T d1qi9a_ 161 VTAAANLAGMEGFPNLDAVSIGSDGTVDPLSQLFRATFVGVETGPFISQLLVNSFTIDSITVEPKQETFAPDVNYMVDFD 240 (555)
T ss_dssp HHHHHHHHTSTTGGGSTTBCCCTTSCCCHHHHTTCBCSTTTSSSCSSCHHHHSCEEETTEEECCCBCCBCTTCCBSCSHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHH
T ss_conf 99999976162456555656677876474654105668987668644388755566786772552346889963002779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~Wl~vQnG~~~~~~~~~d~~~R~I~t~RDLa~~vH~D~lyqa~~nAaLiLL~~g~~~~~g~~~py~~~~~q~GF~~fGgp 320 (555)
T d1qi9a_ 241 EWLNIQNGGPPAGPELLDDELRFVRNARDLARVTFTDNINTEAYRGALILLGLDAFNRAGVNGPFIDIDRQAGFVNFGIS 320 (555)
T ss_dssp HHHHHHTTCCCSSCCCBCSSCBCCCBHHHHHHHHHSCCSSHHHHHHHHHHHHTTSSCTTSCCGGGGGCSSEECBTTBSHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 89874058997664556897613468899877860130369999999999569987788878888763123562334608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 hiLslv~vA~rAlkaaw~QKw~vHrrLRPEa~ggri~~~~~g~~~~~~~~~~l~~~~lL~~V~~~N~~qn~~~~~t~LLP 400 (555)
T d1qi9a_ 321 HYFRLIGAAELAQRSSWYQKWQVHRFARPEALGGTLHLTIKGELNADFDLSLLENAELLKRVAAINAAQNPNNEVTYLLP 400 (555)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHTTTCBCCHHHHHHHHHHHHHTSCCCCCCHHHHTCHHHHHHHHHHHHHHSGGGCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
T ss_conf 99999999999999999998765731487988778998760576777547777527799999986221168877753245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 mAf~EGSPtHPsY~AGHAtvAGA~vTiLKAff~~~~~~~~~~~pv~~~~dg~~L~~y~g~~LTv~GELNKLAaNIaiGR~ 480 (555)
T d1qi9a_ 401 QAIQEGSPTHPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGRQ 480 (555)
T ss_dssp BSSTTCSCSSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSSCEEECTTSSSEEECCSSCCBHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 33457999998876315877758999999996441354567887665777543455678772157689999888874355
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~aGVH~rsD~~~gl~LGE~iAi~iL~e~~~ty~E~~~~~f~~fDG~~v~i~~~~~~~idg~~~~g~~~~~~~~~~ 555 (555)
T d1qi9a_ 481 MLGIHYRFDGIQGLLLGETITVRTLHQELMTFAEESTFEFRLFTGEVIKLFQDGTFTIDGFKCPGLVYTGVENCV 555 (555)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEECTTSCEEEEETTSCEEETTEECSSSSCCCGGGCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 445402565436677579999999999987436563236651489679994683698668326774214744349
|
| >d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Urocanase superfamily: Urocanase family: Urocanase domain: Urocanate hydratase HutU species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=42026.15 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 n~~~~~~ei~a~~g~~l~~k~w~~ea~~rMi~NNLDp~VAe~P~eLvvYGG~G~aarnW~~~~~i~~~L~~l~~deTL~v 80 (554)
T d1uwka_ 1 NNKYRDVEIRAPRGNKLTAKSWLTEAPLRMLMNNLDPQVAENPKELVVYGGIGRAARNWECYDKIVETLTRLEDDETLLV 80 (554)
T ss_dssp CCCCCCCCCCCCCSSCCSSSSHHHHHHHHHHHHHTCTTTCSBGGGTEEETTTEESSSSHHHHHHHHHHHHHCCTTEEEEE
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCEEEECCCCHHHCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 98777761237998820676389999999997179966847822168755753641399999999999972788756998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 qSGkPvgvf~th~~aPRVliaN~~lVp~wa~~e~f~~l~~~Gl~mYGQMTAGSwiYIG~QGIvqGTyeT~~~aark~~~~ 160 (554)
T d1uwka_ 81 QSGKPVGVFKTHSNAPRVLIANSNLVPHWANWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYGG 160 (554)
T ss_dssp ETTEEEEEEECCTTSCSEEEEESCBCGGGCSHHHHHHHHHTTCCCBCTTTTTTTCCCTTHHHHHHHHHHHHHHHHHHTSS
T ss_pred ECCCCCEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 76985265568999971999878316777899999999865873334644213688756541223899999999875388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~L~Gk~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gylD~~~~dLdeai~~~~~A~~~~~~~SIgl~GN 240 (554)
T d1uwka_ 161 SLKGKWVLTAGLGGMGGAQPLAATLAGACSLNIESQQSRIDFRLETRYVDEQATDLDDALVRIAKYTAEGKAISIALHGN 240 (554)
T ss_dssp CCTTCEEEEECCSTTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHTTSCCEECSSHHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred CCCCCEEEECCCCCCCCCCCHHHHCCCCEEEEEEECHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 86786899527777665552233005732899995799999987548641560889999999999875598636874055
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 aadv~e~l~~r~i~pDivTDQTSaHDPl~GY~P~G~s~eEa~~lr~~dP~~f~~~v~~Sm~rHv~Am~~l~~~G~~~FDY 320 (554)
T d1uwka_ 241 AAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPAGWTWEQYRDRAQTEPAAVVKAAKQSMAVHVQAMLDFQKQGVPTFDY 320 (554)
T ss_dssp HHHHHHHHHHHTCCCSEECCCSCTTCTTTSCCCTTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCBC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99999999966998753566553446445548899986899999876899999999999999999999999779758645
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 GNn~r~~A~~aG~~~aF~~PgfVp~yirPlFc~G~GPFRWValSGdpeDi~~TD~~~~e~fp~~~~l~rWI~~A~e~~~f 400 (554)
T d1uwka_ 321 GNNIRQMAKEEGVADAFDFPGFVPAYIRPLFCRGVGPFRWAALSGEAEDIYKTDAKVKELIPDDAHLHRWLDMARERISF 400 (554)
T ss_dssp SSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCBCEEEEETTCCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 56899999857986666677418888578760676886135515884422566799987674217788999988860741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 qGlpARI~wlg~~~R~~~~l~fN~~V~~G~l~aPivigRDHlD~gsvaSP~RETe~m~DGSda~ADwpilNa~~n~a~GA 480 (554)
T d1uwka_ 401 QGLPARICWVGLGLRAKLGLAFNEMVRSGELSAPVVIGRDHLDSGSVSSPNAETEAMRDGSDAVSDWPLLNALLNTAGGA 480 (554)
T ss_dssp CSSCEEECCBCTTHHHHHHHHHHHHHHHTSSSSCEEEEECSCSTTSEECTTTTTTTCTTSCTTBCHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 25652235337038899999999999749623788965666565577687401024766014555069999988640587
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 twVs~H~GGGVG~G~sih~G~~~v~DGt~~a~~rl~~~L~~D~~~GV~R~adAgy~~A~~~a~~~~~~~P~l~g 554 (554)
T d1uwka_ 481 TWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAERIARVLTNDPGTGVMRHADAGYDIAIDCAKEQGLDLPMITG 554 (554)
T ss_dssp SEEEEEESTTTCTTSCEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCBCTTTTC
T ss_pred EEEEEECCCCCCEEEEEECCEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 18999628864152577085699924979999999997322877674651114878999999981889887587
|
| >d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: P22 tailspike protein domain: P22 tailspike protein species: Salmonella phage P22 [TaxId: 10754]
Probab=100.00 E-value=0 Score=42026.04 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~ea~kkfkysvklsd~~tlq~~a~~avd~llid~dynf~~getvdfggk~lti~ckakfigdg~lift~~g~gs~i~~ 80 (554)
T d1tywa_ 1 YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAG 80 (554)
T ss_dssp CHHHHHHHSCCEEEGGGCSSHHHHHHHCSSEEEECSCEECCTTEEEECTTCCCEEEESSEEECSEEEEEECCCTTCEEES
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCEEEEEEEEEEEECCCCEEEECCCCCCEEEE
T ss_conf 96556731013456012356888765026458995211346885653177399998775785067278831478756710
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 pfmes~ttpwvi~pwt~d~~witdaaav~atlkqskt~gyqp~vnd~vkfpg~e~llp~~~kdq~i~stl~ir~c~gvei 160 (554)
T d1tywa_ 81 VFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEV 160 (554)
T ss_dssp CEEECSCCCEEBCCBCTTCCBCCCHHHHHTTCEECSSSSBCCCHHHHHHTTTHHHHSCGGGSSCCCCEEEEEESCBSCEE
T ss_pred CCCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHCCCCCCCCCEEEEEEEHHCCCEEE
T ss_conf 00035888638873447995653589999887530345668873110317775662786445671345886012343799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~ra~glma~~lfr~ch~ck~id~d~~~ggkdgiitfenlsgdwg~gnyviggr~~ygs~s~~qflrnngg~~~~ggvig~ 240 (554)
T d1tywa_ 161 HRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGF 240 (554)
T ss_dssp ESCEEEEEEEEEESCBSCEEESCEEEEECSSCSEEEECSSSSCBCSCEEESCEEEECSSCSEEEESBBCTTTTCCEEESC
T ss_pred EECCCHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEECCEEEECCCCHHHHHHHCCCCCCCCCEEEE
T ss_conf 60564345677536603566427888788551698531577546664465232310454364332206984446977888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ts~ragesg~ktwqgsvg~~tsrnynlqfrdsv~l~pvwdgfdlg~d~~m~pe~drpgd~p~sqyp~hqlp~nhlidn~l 320 (554)
T d1tywa_ 241 TSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLL 320 (554)
T ss_dssp EEESCSSCSEEECCSEETTEECCCBSCEEEEEEEESCSSCSEEECCCCC------CTTSCCTTTSCTTCCCCCCEEEEEE
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHE
T ss_conf 76323776511321133665445343464031577502245345789998988899988742328351375023233310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 v~~slgvglgmdg~g~yvsnitv~dcag~g~~~~t~~~vfsni~iid~n~~~f~~~qi~i~g~c~vng~r~~gi~~~~~~ 400 (554)
T d1tywa_ 321 VRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQ 400 (554)
T ss_dssp EECCSSCSEEEEEESCEEEEEEEESCSSCSEEEEEESCEEEEEEEESCCTTCCSSEEEEECSSCEEEEEEECCCCC----
T ss_pred EECCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHEECCEEEEECCCCCCCCCEEEEECCEEECCEEEEEECCCCCC
T ss_conf 11353201201377734730074015662063521222021048996366568766389974268743677540158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 g~~i~apnstvsgi~g~v~p~ri~v~nl~~~~lg~~r~n~fnsdsa~l~lrihklsktldsga~~s~~ngg~gsgsawte 480 (554)
T d1tywa_ 401 GLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQ 480 (554)
T ss_dssp -EEEEEEEEEEEEEESCCCGGGEEEEEECCTTCCSCCCCCCSSSEEEEEECCTTTCSSSCCEEEEEEESSSTTCCCEEEE
T ss_pred CEEEECCCCCCCCCCCCCCHHHEEEHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHE
T ss_conf 41885897610020056786872102203410264022145774177634467554102454312112588988711210
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~taisgs~p~avslkinrgd~~~~eip~~~tvlpd~~v~d~~~~~ly~~~~~~~l~alvk~p~gs~tr~~latl 554 (554)
T d1tywa_ 481 LTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL 554 (554)
T ss_dssp EEEEETTEEEEEEEEESGGGCCSEECCCBSSCCCGGGCCSTTEEEEEEEGGGTEEEEEEECTTSCEEEEEEECC
T ss_pred EHHHCCCCCCCEEEEECCCCCCEEECCCCCCCCCCHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEEEECC
T ss_conf 11031689873688862676421344525542673442166605789718725578772178986587886239
|
| >d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea [TaxId: 489]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylosucrase species: Neisseria polysaccharea [TaxId: 489]
Probab=100.00 E-value=0 Score=42007.08 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (554)
T d1g5aa2 1 SPNSQYLKTRILDIYTPEQRAGIEKSEDWRQFSRRMDTHFPKLMNELDSVYGNNEALLPMLEMLLAQAWQSYSQRNSSLK 80 (554)
T ss_dssp CCCHHHHHHHHGGGSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 97327789998764327777642012669999999998899999999998397077899999999999999874776431
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~d~~r~~~~~w~~~~~~~~~~~y~~~fgGDl~Gi~~kLdYLk~LGVt~I~L~Pi~~~p~~~sd~GY~v~dy~~Vdp~lG 160 (554)
T d1g5aa2 81 DIDIARENNPDWILSNKQVGGVCYVDLFAGDLKGLKDKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALG 160 (554)
T ss_dssp HHHHHHHTCGGGGGCTTCCEEEECHHHHHSSHHHHHTTHHHHHHHTCSEEEECCCBCCCSSCSTTTTSCSCSSSBCTTTC
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11444543876323767236778343568389999985689997399989979887899888899958666787782349
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 t~edl~~Lv~~aH~rGI~VilD~V~NHts~~h~w~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
T d1g5aa2 161 TIGDLREVIAALHEAGISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQL 240 (554)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSEEETTSHHHHHHHTTCGGGTTSBCEESSSHHHHHHTTTCCCSSTTTCSTTEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 99999999999998799899987867788876125555205885446458757888876556777666788998531354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~f~~~~~dln~~np~V~~~~~~~~~~w~~~gvDGfRlDa~~~~~~~~~~~~~n~p~~~~~~~~~~~~~~~~~ 320 (554)
T d1g5aa2 241 EDGRWVWTTFNSFQWDLNYSNPWVFRAMAGEMLFLANLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAA 320 (554)
T ss_dssp TTSCEEECSSSTTEEEBCTTSHHHHHHHHHHHHHHHTTTCSEEEETTGGGSCCCTTSCSSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 88704634657766633557889998877666663221011101355000003446543268135689999999876418
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 p~~~l~aE~~~~~~~~~~y~g~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~l~~~~~~~~~~~~~nfl~~HD~ig~~~~ 400 (554)
T d1g5aa2 321 PAVFFKSEAIVHPDQVVQYIGQDECQIGYNPLQMALLWNTLATREVNLLHQALTYRHNLPEHTAWVNYVRSHDDIGWTFA 400 (554)
T ss_dssp TTCEEEECCCSCHHHHGGGBSTTSBSEEECHHHHHHHHHHHHHCCCHHHHHHHHHSCCCCTTCEEEEESCCSSCBCCCCC
T ss_pred CCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEHHCCCCCCCCCC
T ss_conf 87313024557889988873787400232321101222200222089999999847146888757763101554334410
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~n~~~~d~~~~~~~~~~~~~~~~~~~~~~r~~la~alllt~pG 480 (554)
T d1g5aa2 401 DEDAAYLGISGYDHRQFLNRFFVNRFDGSFARGVPFQYNPSTGDCRVSGTAAALVGLAQDDPHAVDRIKLLYSIALSTGG 480 (554)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTTCSTTCCCCCEEECCCTTTCCCEEECCHHHHHTGGGTCTTHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 34454420010577888753001355653235765120545564100243011045566508999999999999997288
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 iP~IYyGdEiG~~nd~~~~~d~~~~~~~rw~~r~~~~~~~~~~~~d~~s~~~~v~~~~r~Li~lRk~~pAf~~G 554 (554)
T d1g5aa2 481 LPLIYLGDEVGTLNDDDWSQDSNKSDDSRWAHRPRYNEALYAQRNDPSTAAGQIYQDLRHMIAVRQSNPRFDGG 554 (554)
T ss_dssp EEEEETTGGGTCCCCSSGGGCTTTTTCGGGGGCCCCCHHHHTTTTCTTSHHHHHHHHHHHHHHHHHHCGGGCSS
T ss_pred HHHHEECHHHCCCCCHHHCCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHCCC
T ss_conf 36622054228789811034877788730113466998899753086547999999999999998517764279
|
| >d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Arylsulfatase domain: Steryl-sulfatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=41931.67 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 aa~rPNIl~I~~Dd~~~~~~g~~G~~~~~TPnlD~LA~~G~~F~nay~~~p~C~PSRasllTG~yp~~~gv~~~~~~~~~ 80 (553)
T d1p49a_ 1 AASRPNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLATPSRAAFMTGRYPVRSGMASWSRTGVF 80 (553)
T ss_dssp CCCCCEEEEEEESSCCTTSSGGGTCSSSCCHHHHTTTTTSEEESSEECSCCC-CHHHHHHHHSSCGGGGTCSCSSSCCSC
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCC
T ss_conf 99998699998628999976758899898868999997084401724599646799999997748354088665667744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~l~~~~~tl~~~Lk~~GY~T~~~GK~H~g~~~~~~~~~~~~p~~~GFd~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (553)
T d1p49a_ 81 LFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCHSKTDFCHHPLHHGFNYFYGISLTNLRDCKPGEGSVFTTGF 160 (553)
T ss_dssp CCTTCCCCSCTTCCCHHHHHHHTTCEEEEEEECCSCCCSSSTTTCTTSGGGTTCSEEEEESSCCCGGGSTTCCTTSHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57765577896636199999977986999675315678767764356874333220135466776544446676557665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~ 240 (553)
T d1p49a_ 161 KRLVFLPLQIVGVTLLTLAALNCLGLLHVPLGVFFSLLFLAALILTLFLGFLHYFRPLNCFMMRNYEIIQQPMSYDNLTQ 240 (553)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEETTEEEEESCCCTTHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44456753335654000222100011036656432001122344431000000232232211123443211122212222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~y~a~i~~~D~~iG~ll~~L~~~gl~dnTiIiftSD 320 (553)
T d1p49a_ 241 RLTVEAAQFIQRNTETPFLLVLSYLHVHTALFSSKDFAGKSQHGVYGDAVEEMDWSVGQILNLLDELRLANDTLIYFTSD 320 (553)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECCTTSSSCCCCTTTSSCCSSSHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEEEEES
T ss_pred CCCHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 22101111002224587200001344332222222211002233321232346620214787554338876633899658
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 hG~~lge~~~~~~~~~~~~g~~~~~K~~~yE~~~rVPlii~~P~~~~~G~~~~~~vs~iDi~PTildlaG~~~p~~~~~d 400 (553)
T d1p49a_ 321 QGAHVEEVSSKGEIHGGSNGIYKGGKANNWEGGIRVPGILRWPRVIQAGQKIDEPTSNMDIFPTVAKLAGAPLPEDRIID 400 (553)
T ss_dssp SCCCTTCBCSSSCBCSCCCTTCCCCTTSSSHHHHCCCEEEECTTTSCTTCEECSCEEGGGHHHHHHHHHTCCCCSSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 98634444556753322245657776565667863111553022346993542000144454212220235786323332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 G~Sl~p~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eL 480 (553)
T d1p49a_ 401 GRDLMPLLEGKSQRSDHEFLFHYCNAYLNAVRWHPQNSTSIWKAFFFTPNFNPVGSNGCFATHVCFCFGSYVTHHDPPLL 480 (553)
T ss_dssp CCCCHHHHTTSCSSCSCSEEEEEETTEEEEEEECCTTCCCCEEEESCCCCCSCC----CTTTSSCCSSSTTCCCCSSCEE
T ss_pred CCCHHHHHCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11345775299988885089996267543101134333575147883367674344564222222123443457996806
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 481 yDL~~DP~E~~NL~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~pw~~~~~~~~~~~~~~~~~ 553 (553)
T d1p49a_ 481 FDISKDPRERNPLTPASEPRFYEILKVMQEAADRHTQTLPEVPDQFSWNNFLWKPWLQLCCPSTGLSCQCDRE 553 (553)
T ss_dssp EETTTCTTCCSCCCSTTTTSHHHHHHHHHHHHHHHTTSCCCCCCTTSHHHHSCCGGGCCCSSSSSSCCCEECC
T ss_pred CCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1567583144034634688999999999999998762577986565656788797758887969977738999
|
| >d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein) {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prismane protein-like superfamily: Prismane protein-like family: Hybrid cluster protein (prismane protein) domain: Hybrid cluster protein (prismane protein) species: Desulfovibrio vulgaris [TaxId: 881]
Probab=100.00 E-value=0 Score=41931.51 Aligned_cols=1 Identities=0% Similarity=-0.926 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 mfC~QCe~t~~g~gCt~~GVCGk~ad~~~~qdlL~~~~~G~a~~~~~ar~~g~~~~~~~~~~~~~lf~TlTNvnFd~~~~ 80 (553)
T d1gnta_ 1 MFCFQCQETAKNTGCTVKGMCGKPEETANLQDLLIFVLRGIAIYGEKLKELGQPDRSNDDFVLQGLFATITNANWDDARF 80 (553)
T ss_dssp CCBCCSTTCGGGTCBSSBCTTCCBHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHTSTTTBCCHHHH
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 98857660789998886634799989999999999999999999999998099848899999867500232567887999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~glkG~~A 160 (553)
T d1gnta_ 81 EAMISEGLARRDKLRNAFLAVYKAKNGKDFSEPLPEAATWTGDSTAFAEKAKSVGILATENEDVRSLRELLIIGLKGVAA 160 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCGGGTCCCCGGGHHHHHTTSSGGGCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHH
T ss_conf 99999999999999999998642004664343466877405787999976454463366796578899998743169999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 y~~Ha~~lG~~d~ev~~~~~~al~~~~~d~~~~~ll~~~L~~G~~~~~~m~lld~a~d~~fG~P~pt~V~lgv~~~~nIl 240 (553)
T d1gnta_ 161 YAEHAAVLGFRKTEIDEFMLEALASTTKDLSVDEMVALVMKAGGMAVTTMALLDEANTTTYGNPEITQVNIGVGKNPGIL 240 (553)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECSCCSSCEEE
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEE
T ss_conf 99999982899579999999999985799999999999999887788999998888764348993268505767887389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 VsGHdl~~leelleqa~~~Ga~~yth~eml~a~~yp~lr~~~~l~Gn~g~aw~~q~~Ef~~~tGaIv~t~nCi~P~~~a~ 320 (553)
T d1gnta_ 241 ISGHDLKDMAELLKQTEGTGVDVYTHGEMLPANYYPAFKKYPHFVGNYGGSWWQQNPEFESFNGPILLTTNCLVPLKKEN 320 (553)
T ss_dssp EESSCHHHHHHHHHHHTTTTCEEEECGGGGGGGGCHHHHTCTTEEEECSCCGGGHHHHHHHHCSCEEESSSCCCCCCTTC
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCHHC
T ss_conf 86988789999999999669858988423568876988189874423010456578998518877898556556796101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~Y~~ri~Tt~~v~~pGa~Hi~~~~~~~~~d~~~iI~~Aie~~~~~~~~~~~i~~GFs~eavl~~~~~lidaIk~G~Irg~ 400 (553)
T d1gnta_ 321 TYLDRLYTTGVVGYEGAKHIADRPAGGAKDFSALIAQAKKCPPPVEIETGSIVGGFAHHQVLALADKVVEAVKSGAIKRF 400 (553)
T ss_dssp CCGGGEEEETTCBCTTSEEECCCCTTSCCCCHHHHHHHTTSCCCCCCCCSEEEECCCHHHHHHTHHHHHHHHHHTSCCEE
T ss_pred CCCCCEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 35786685577678998760688767266699999999967999888877489814599999857999999964987648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~v~GCd~~~~~~~y~t~~~eli~~D~lVLT~GC~k~r~~k~gLg~~~GIPpvLd~GqC~D~~r~~~ia~aLA~algv~d 480 (553)
T d1gnta_ 401 VVMAGCDGRQKSRSYYTEVAENLPKDTVILTAGCAKYRYNKLNLGDIGGIPRVLDAGQCNDSYSLAVIALKLKEVFGLDD 480 (553)
T ss_dssp EECCBCCCSCGGGHHHHHHHHHSCTTEEEEECSGGGGGTTTSCCCEETTEESEEECCSGGGHHHHHHHHHHHHHHTTCSC
T ss_pred EEEECCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99963899987733999999867778699825177654112488764799852105266337899999999999729998
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 vndLPl~~~~~W~eqKAvai~l~llalGi~~i~lGp~~P~~~Sp~v~~~L~e~f~~~~i~~~e~Dl~~~l~~k 553 (553)
T d1gnta_ 481 INDLPVSYDIAWYEQKAVAVLLALLFLGVKGIRLGPTLPAFLSPNVAKVLVENFNIKPIGTVQDDIAAMMAGK 553 (553)
T ss_dssp GGGSSEEEEEECCSHHHHHHHHHHHHTTCCSCEEESSCCTTCCHHHHHHHHHHHCCBCCCCHHHHHHHHHTTC
T ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
T ss_conf 5547533430488899999999999849984155888976578799999998639975687689999986589
|
| >d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Cobalamin (vitamin B12)-dependent enzymes family: Diol dehydratase, alpha subunit domain: Diol dehydratase, alpha subunit species: Klebsiella oxytoca [TaxId: 571]
Probab=100.00 E-value=0 Score=41797.40 Aligned_cols=1 Identities=0% Similarity=-0.893 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 mrskRfe~L~~rpVn~DGfv~ewpe~GlvAm~sp~DPkPsiki~~G~vvEmDGk~~~dFD~ID~fIA~y~I~~~~Ae~aM 80 (551)
T d1eexa_ 1 MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIVNGAVTELDGKPVSDFDLIDHFIARYGINLNRAEEVM 80 (551)
T ss_dssp CCCHHHHHHHTSGGGGSCEECCBGGGTBSSSCCTTSCCCCEEEETTEEEEETTEEGGGCCHHHHHHHHHTSCTTTHHHHH
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCHHCCEEEECCCCCCCCCEEEECCEEEECCCCCHHHHCHHHHHHHHHCCCHHHHHHHH
T ss_conf 94267889861975645554437001634304899989855874786996068616751349999998445765689874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 amds~~iArmlvD~nv~R~ei~~l~~~~TPAK~~eVv~~ln~vEmmma~qKMRaRrtP~nQaHvTN~~DnPvqiAADAAe 160 (551)
T d1eexa_ 81 AMDSVKLANMLCDPNVKRSEIVPLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAE 160 (551)
T ss_dssp HSCHHHHHHHHHCTTSCHHHHHHHHTTSCHHHHHHHHTTCCHHHHHHHHHHHCSBSSCCCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHH
T ss_conf 66789999875089999899999870588799999997357999999999741537986523313577767887777889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 aa~rGF~E~ETTv~v~ryAp~nAialliGsqvGrpGvltQCs~EEA~EL~lGmrG~tsYAETiSVYGTe~vF~DGDDTPw 240 (551)
T d1eexa_ 161 GAWRGFDEQETTVAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVFTDGDDTPW 240 (551)
T ss_dssp HHHHTCSEEEECCSSGGGHHHHHHHHHHHHHHHCTTCEEEECCCHHHHHHHHHTTCCSEEEEEECCSSHHHHHHTTCCHH
T ss_pred HHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECCCCCCC
T ss_conf 98728603331124442261678999861556898233210022577777544212221214676123320017999810
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 SKafLasaYASRGlKMRfTSG~GsEv~MG~aEgkSmLYLEaRCi~itkg~GvQGlQNG~vscigv~~aVP~GiR~vlaEN 320 (551)
T d1eexa_ 241 SKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSMLYLEARCIYITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAEN 320 (551)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTHHHHTTCCTTCCHHHHHHHHHHHHHHHTCSEEECSSGGGTTTGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 79999998860672488537875476513313540243345677521214643233786120004677844799999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Li~~mldLE~aSgNDq~fshSdiRrtar~l~q~l~GtDfI~SGyss~pnyDNmFagSN~daeD~DDy~vlQRDl~vdGGL 400 (551)
T d1eexa_ 321 LICSSLDLECASSNDQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQRDLKVDGGL 400 (551)
T ss_dssp HHHHHTTCEEECCCCSCCCSCHHHHHHHHHHHHTTCCSBSCEEEESSCGGGCTTSCCSSCGGGHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998455003577654431378889988887558864330376677775444467778756656788888763257885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 rpV~ee~~i~vRnkAA~AiqaVf~~Lglp~itDeeveaatyA~gS~Dmp~r~~~~dlkaa~~~~~rgit~~DvVkaL~~~ 480 (551)
T d1eexa_ 401 RPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPERNIVEDIKFAQEIINKNRNGLEVVKALAQG 480 (551)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHCSSGGGSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 41789999999999999999999866989887899999887248866787566889999999997598251999999866
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 Gf~dvAe~il~m~kqrv~GDyLqTSAi~d~~~~v~Savnd~NdY~GPGTGYr~~~erw~~ik~i~~ai~p~ 551 (551)
T d1eexa_ 481 GFTDVAQDMLNIQKAKLTGDYLHTSAIIVGDGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPN 551 (551)
T ss_dssp TCHHHHHHHHHHHHHHHHCGGGSTTCEEETTTEEECTTTSBCCCCSTTCSSCCCHHHHHHHHCCTTCBCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCHHHCCCCC
T ss_conf 98699999999999872110454555434787477413785457799777665887999985403212889
|
| >d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lipoxigenase superfamily: Lipoxigenase family: Animal lipoxigenases domain: 15-Lipoxygenase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=0 Score=41780.71 Aligned_cols=1 Identities=0% Similarity=-0.228 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~d~~~~~~~~R~~EL~~~~~~Y~w~~~~~G~P~~~~~~~~~~lP~de~f~~~k~~~~~~~~~~~~~~~~~~~~~ 80 (551)
T d2p0ma1 1 TGCTTVGDPQGLFQKHREQELEERRKLYQWGSWKEGLILNVAGSKLTDLPVDERFLEDKKIDFEASLAWGLAELALKNSL 80 (551)
T ss_dssp TCCCSTTCTTCTTHHHHHHHHHHHHHHSCEECSSTTSCCEESCSSGGGSCGGGSCCHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98512578606789999999999997648788889987555866545598132123477889999999999998765544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~w~~l~D~~~lf~~~~~~~~~~~~~~W~~D~~F~~Q~LaG~NP~~I~r~~~~P~~~~~~~~~~~~~~~L~~al~~g 160 (551)
T d2p0ma1 81 NILAPWKTLDDFNRIFWCGRSKLARRVRDSWQEDSLFGYQFLNGANPMLLRRSVQLPARLVFPPGMEELQAQLEKELKAG 160 (551)
T ss_dssp GGGSCCSSGGGHHHHCCSCCCHHHHHHHHSSSCHHHHHHHHHHSSCTTSCEECSSCCTTCCCCTTTTHHHHHHHHHHHHT
T ss_pred HCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 02578887899999717899872456888765449999999647996120033126522589821145689999998619
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 rlfi~Dy~~l~~~~~~~~~~~~~~~~Ap~~LF~l~~~g~L~PiAIqL~~~~~~~~~~~vftP~d~~~~W~lAK~~v~~aD 240 (551)
T d2p0ma1 161 TLFEADFALLDNIKANVILYCQQYLAAPLVMLKLQPDGKLMPMVIQLHLPKIGSSPPPLFLPTDPPMVWLLAKCWVRSSD 240 (551)
T ss_dssp CEEEEECGGGTTCCCCEETTEECCCCCCEEEEEEETTTEEEEEEEECSCCCTTSCCCCEECTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHH
T ss_conf 87644355551102565478886774126999987999632378991389988888974688999528999999998611
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~HqlisHll~THl~~E~~~iAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~ar~~Li~~gg~i~~~~~~g~~~~~~~~~~ 320 (551)
T d2p0ma1 241 FQVHELNSHLLRGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQ 320 (551)
T ss_dssp HHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHHHHHHHTTTTSSTTSHHHHHCSSTTTHHHHHHHG
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 45788874220103566899999884088646589887789999998888887601189971133105673108999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~f~~~~lp~dL~~RGv~~~~~YpYrdDgl~iW~aI~~~V~~~v~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~~~~ 400 (551)
T d2p0ma1 321 AGAFLTYRSFCPPDDLADRGLLGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIGLQGAQ 400 (551)
T ss_dssp GGTTCCGGGGCHHHHHHHHTCTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHTCHHHHHHHHHHHTTTTTSGG
T ss_pred HHHHCEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 87626016677704577569987556870230899999999999999888418714322679999999999704788876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~g~p~~l~t~~~Lv~~lT~iIf~aS~~HAAVNfgQ~~y~~fvPN~P~~lr~ppP~~~~~~~~~~l~~LP~~~~a~~~~~ 480 (551)
T d2p0ma1 401 KQGFPTSLQSVAQACHFVTMCIFTCTGQHSSIHLGQLDWFTWVPNAPCTMRLPPPTTKDATLETVMATLPNLHQSSLQMS 480 (551)
T ss_dssp GTTCCSCCCSHHHHHHHHHHHHHHTTHHHHHHHTTHHHHSSSGGGSCSCCSSCCCSSSCCCHHHHHHHSCCHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 79999677799999999996776423045443235332346178997665379999986439999986888899999999
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~Ls~~~~d~~~LG~~~~~~~~d~~~~~a~~~F~~~L~~i~~~I~~RN~~~~~PY~yL~P~~IpnSIsI 551 (551)
T d2p0ma1 481 IVWQLGRDQPIMVPLGQHQEEYFSGPEPRAVLEKFREELAIMDKEIEVRNEKLDIPYEYLRPSIVENSVAI 551 (551)
T ss_dssp HHHHHSCCCSSCCBTTCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCTTCTTTSBSSCCC
T ss_pred HHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998347874210357721302686899999999999999999999972899999668697999883419
|
| >d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cullin repeat-like family: Exocyst complex component domain: Exocyst complex component EXO70 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=41779.07 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~v~~~a~~~s~~E~ii~~g~~~~~L~~Yl~al~rl~~al~~l~~~~~~~~~~~~~~gil~~l~~L~~~g~~~Le~~F~~l 80 (551)
T d2b7ma1 1 SVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISI 80 (551)
T ss_dssp CHHHHHHHHHHHHHHHTSCGGGSTHHHHHHHHHHHHHHHHTTTSTTTSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95457767788899998096503699999999999999999984676737678777999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 L~~~~p~~p~~~~~k~~~~p~~~~~~~~~L~~Ia~~l~~~~~~~~~~~iY~~~R~~~l~~sL~~L~~~~~s~~~~~~~~y 160 (551)
T d2b7ma1 81 LNSIKPFDPQINITKKMPFPYYEDQQLGALSWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPY 160 (551)
T ss_dssp HTSSCCCCTHHHHHTCCCCCCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTTGGGGCC---------
T ss_pred HCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCH
T ss_conf 56689888156660578999999899999999999998679972899999999999999999973235415535413753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~i~~~~~av~~l~~~E~~l~~~if~~~~~~~~~~f~~i~~~~i~~~~~~~~~i~~~~k~~~~~~~f~~ld~~e~l 240 (551)
T d2b7ma1 161 EKGSSGMNSYTEALLGFIANEKSLVDDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESI 240 (551)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 56658999999999999999999999980886035888999999999999999999999987436406688998899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~l~~~~~~~~~~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~~~~~lP~dG~Vh~lT~~vm~yL~~L~eY~~~l~~i 320 (551)
T d2b7ma1 241 NDVKKSLRGKELQNYNLLQDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFSEYKNGCLGA 320 (551)
T ss_dssp HHHHHHHTTSCCSCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCSCCTTSCCCHHHHHHHHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999887401668999999999999999999999999997333678868999986753999999999987328999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ls~~i~~vi~~L~~nLe~kak~y~d~~l~~~~~~~~~~~~~~~~~~ 400 (551)
T d2b7ma1 321 MDNITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRI 400 (551)
T ss_dssp TTTCCGGGGSCSSCCGGGSCCCCCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCSCTTCSSCCCHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHH
T ss_conf 99626677776666677754455666777502279999999999999999999997401022100013310013330233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~iFlmNN~~yI~~~v~~SeL~~lLg~~~~~~~~~~~~~~~~y~~~~W~~v~~~L~d~~~~~~~~~~sk~k~~iKekFk~F 480 (551)
T d2b7ma1 401 GFFILMNLTLVEQIVEKSELNLMLAGEGHSRLERLKKRYISYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKF 480 (551)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 67998559999999986328988627999999999999999999999999997622045778777876689999999999
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 N~~Fee~~~~q~~~~i~D~~LR~~L~~~i~~~v~p~Y~~F~~ry~~~~k~~~KyiKY~p~~le~~L~~L~~ 551 (551)
T d2b7ma1 481 NEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPRKHIKYTPDELTTVLNQLVR 551 (551)
T ss_dssp -CHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCSTTTCCCCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHCC
T ss_conf 99999999983775186899999999999999999999999984645789874450489999999999709
|
| >d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphofructokinase superfamily: Phosphofructokinase family: Phosphofructokinase domain: Pyrophosphate-dependent phosphofructokinase species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=100.00 E-value=0 Score=41702.40 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 s~~q~~r~~~~p~lp~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~fp~~~~~p~~~~~~~~~~~~~~~~~rIgIl~sGG~ 80 (550)
T d2f48a1 1 SLFKQERQKYIPKLPNILKKDFNNISLVYGENTEAIQDRQALKEFFKNTYGLPIISFTEGESSLSFSKALNIGIILSGGP 80 (550)
T ss_dssp CHHHHHHTTCCCCCCGGGGSCGGGEEEEECCCCCCSSCHHHHHHHTTTTTTCCCEEEEESCCCCSCCSCCEEEEEEBSSC
T ss_pred CHHHHHHHHCCCCCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCC
T ss_conf 97687787578999946827620344214776556689999999857760883045236888887689877999896787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 aPG~N~vI~gvv~~~~~~~~~~~v~G~~~G~~GL~~~~~~~L~~~~v~~~~~~GG~~l~~s~r~~~~~~e~~~~i~~~l~ 160 (550)
T d2f48a1 81 APGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAK 160 (550)
T ss_dssp CTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 28899999999999998589989999885038864898798999998348727990721799999767788899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~Id~LviIGGd~S~~~a~~Lae~~~~~~~~i~vigvPKTIDNDl~~~~~d~s~GfdTA~~~~~~~i~~l~~da~S~~~ 240 (550)
T d2f48a1 161 ENNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATKIYSELIGNLCRDAMSTKK 240 (550)
T ss_dssp HTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 64888799989837999999999999971899628970244367877765566542778999999999999988764356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~VevMGR~aG~lAl~~alat~a~~ilipE~~~~~~~~L~~i~~~i~~~I~kR~~~gk~~gvIvV~EGli~~ipe~~~ 320 (550)
T d2f48a1 241 YWHFVKLMGRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEVKS 320 (550)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTGGGTSHHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 34899980687718899999861886598336446401017899999999999999728983899954732103667889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Li~el~~~l~~~~~~~~~~~~~~~~~~~~~~ls~~~~~l~~~lp~~i~~qll~~~~~rD~~G~~~ls~I~~e~lLa~~V~ 400 (550)
T d2f48a1 321 LMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLPLFIQFELIKSILERDPHGNFNVSRVPTEKLFIEMIQ 400 (550)
T ss_dssp HHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHSCHHHHHHHHTSCHHHHHHHHHHHHTCCTTCCCCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf 99999876540232101222012344555420134444430261778888753013648888863345457799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~L~~~~~~~~~~~~f~~~~h~~GYe~R~a~PS~fD~~~a~~lG~~Av~~~~~G~tG~M~~I~~l~~~~~~w~~~~iPl~ 480 (550)
T d2f48a1 401 SRLNDMKKRGEYKGSFTPVDHFFGYEGRSAFPSNFDSDYCYSLGYNAVVLILNGLTGYMSCIKNLNLKPTDWIAGGVPLT 480 (550)
T ss_dssp HHHHHHHTTTCCCSCCCEEEEEESHHHHTSCCCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCGGGCEEEEEEGG
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCHH
T ss_conf 99987664033443124544266532317799989999999999999999976998879988479889721488785689
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~m~~e~r~g~~~~~i~k~~v~l~~~~f~~~~~~r~~w~~~d~y~~pGpiQ~~g~~~~~~~~~~tl~~e~ 550 (550)
T d2f48a1 481 MLMNMEERYGEKKPVIKKALVDLEGRPFKEFVKNRDKWALNNLYLYPGPVQYFGSSEIVDEITETLKLEL 550 (550)
T ss_dssp GGEEEEEETTEEEEEECCCCCCTTSHHHHHHHHHHHHHHHSCCCCCCCCCCCSSCHHHHTCCCHHHHHHT
T ss_pred HHHHHHHHCCCCCCCEECCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCHHCCCC
T ss_conf 9950787469867533055268886899999999998875184767798346786344266661110059
|
| >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Formyltetrahydrofolate synthetase species: Moorella thermoacetica [TaxId: 1525]
Probab=100.00 E-value=0 Score=41639.00 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 D~eIa~~~~~~~I~~ia~~~gl~~~~~~~yG~~kaKv~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~aL~ 80 (549)
T d1eg7a_ 1 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALA 80 (549)
T ss_dssp CCSTTCCCCCCCHHHHHHTTTCCGGGEEESSSSCEEECTHHHHHHTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHCCCCHHHHHHCCCCCEEECHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEHHHHHHHHH
T ss_conf 96567418897999999883989799763377526745889876313899649999857898888985102886999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~lgk~~~~~lRePSlGP~fGiKGGAaGGG~sqv~Pme~inLhftGD~hAitaA~NLl~A~idn~i~~gn~L~iDp~~I~w 160 (549)
T d1eg7a_ 81 RLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGNVLNIDPRTITW 160 (549)
T ss_dssp HTTCCEEEEECCCCSTHHHHTTCCCSEETTEEEECHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTCTTCBCGGGCCC
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 70984589972588787325666777777126642145220047857778999999999998643456657878762354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~Rv~D~NDR~LR~i~vglgg~~~G~~r~~gFdIT~ASEvMAIl~La~~l~DLr~Rlg~ivv~~~~~g~pv~a~DL~~~GA 240 (549)
T d1eg7a_ 161 RRVIDLNERALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGS 240 (549)
T ss_dssp CEEESSCCGGGSSEEESCSSTTSCCCEEECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEEBTTSCEEETGGGTCHHH
T ss_pred CEEECCHHHHHHHEEEECCCCCCCCCEECCCCCCHHHHHEEEEEECCCHHHHHHHHCCEEEEECCCCCCCCHHHCCCCHH
T ss_conf 31420212210015771355678861123532111000016655328999999764278851047979744664124255
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 m~~LLkdAi~PNLvQT~EgtPa~vHgGPFANIAhG~nSviAt~~al~ladyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~ 320 (549)
T d1eg7a_ 241 MALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPD 320 (549)
T ss_dssp HHHHTTTTTSCEEEEETTCCEEEECCCCCSSSSCCBCCHHHHHHHHHHCSEEEEEBSSCTTTHHHHHHHTHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 99999977776655103688556614776560305516999898751477699850236775623440042345799975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~VlVaTvRALK~HGG~~~~~l~~eNl~Al~~G~~NL~rHIeNi~~fGlpvVVAIN~F~tDTd~Ei~~i~~~~~~~g~~~ 400 (549)
T d1eg7a_ 321 ATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEV 400 (549)
T ss_dssp EEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHTTTSEEEE
T ss_pred EEEEEEEHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 38999531345545799948817325999998877799998752222897499852577531447889999886527631
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 a~~wa~GG~Ga~dLA~~Vv~a~e~~~~~f~~LY~~~~~l~eKIe~IA~~IYGA~~V~~S~~A~kqL~~~e~~G~~~LPVC 480 (549)
T d1eg7a_ 401 ALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVV 480 (549)
T ss_dssp ECCTTTGGGGGHHHHHHHHHHHHHSCCCCCCSSCTTSCHHHHHHHHHHHTTCCSEEEECHHHHHHHHHHHHTTCTTSCEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCCCCCEE
T ss_conf 10002476643789999999875356564456785124999999999995599705468999999999997799988888
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 mAKTqySfS~Dp~l~GaP~gf~l~VrevrlsaGAGFiV~i~G~ImTMPGLPk~PaA~~Idid~~G~I~G 549 (549)
T d1eg7a_ 481 MAKTQYSFSDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDIDADGVITG 549 (549)
T ss_dssp EECCTTSSSSCTTCCSCCCSCEEEECCCEEETTTEEEEECSSTTCCSCCCCSSCGGGTCEECSSSEECC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 881787767796667999898688558998678608999836630079889974420155589987609
|
| >d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Murine minute virus, strain i [TaxId: 10794]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Parvoviridae-like VP domain: Parvovirus (panleukopenia virus) capsid protein species: Murine minute virus, strain i [TaxId: 10794]
Probab=100.00 E-value=0 Score=41621.87 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~g~~~g~~~~~~~~~~~g~~~~~vt~~~tR~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~d~~~~~~~TPW~y~D~N~ 80 (549)
T d1mvma_ 1 GVGVSTGSYDNQTHYRFLGDGWVEITALATRLVHLNMPKSENYCRIRVHNTTDTSVKGNMAKDDAHEQIWTPWSLVDANA 80 (549)
T ss_dssp CCSSCCCCCCCCEEEEECSSSEEEEEEEEEEEEEECCCSCSSCEEEEECCTTSSSSSSTTTTCCCEEEEEEEEEEECCCS
T ss_pred CCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCHHEECCCC
T ss_conf 96655776456642267368617999866778983789986245787257776554454135654233435701062334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~hfsP~DwQ~l~n~~~~irpksl~v~I~ni~iK~Vt~~~~~~~~~t~~~n~lTa~v~vf~D~~y~lPYv~g~~~~~~~ 160 (549)
T d1mvma_ 81 WGVWLQPSDWQYICNTMSQLNLVSLDQEIFNVVLKTVTEQDSGGQAIKIYNNDLTACMMVAVDSNNILPYTPAANSMETL 160 (549)
T ss_dssp STTTCCHHHHHHHHHHBSEECCCCEEEEEEEEEEEEEEEECSSSSCEEEEEECTTCCBCEEEECSCCSCCCCGGGGTCCC
T ss_pred EECCCCHHHHHHHHHHCCCEECCEEEEEEEEEEEEEEEECCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 02246889999998733555023259999778988998657887441587157750689997788757735588777778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~P~~~~~~pqY~Y~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~s~fy~LEn~~~~~~LrTG~~f~~~~y~F~~~p~~ 240 (549)
T d1mvma_ 161 GFYPWKPTIASPYRYYFCVDRDLSVTYENQEGTIEHNVMGTPKGMNSQFFTIENTQQITLLRTGDEFATGTYYFDTNPVK 240 (549)
T ss_dssp CSSTTSCEECEEEEEECCCCCBCCCCCTTCSSCCCCCBCCCCCTTTCCCCCHHHHSCCCCBCSSCCEECCCCCCCCCCEE
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHEECCCCCEEEEECCCCCCCH
T ss_conf 98998555467853788426776543356666301343466766663169974488177324687622356527876720
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~nPl~~~~~~~dt~~~~~~~~~~~~~~~~~~~N~l~~~~r~rp~~~g~~~~~~~~~~~~~~~~~~p~~ 320 (549)
T d1mvma_ 241 LTHTWQTNRQLGQPPLLSTFPEADTDAGTLTAQGSRHGATQMEVNWVSEAIRTRPAQVGFCQPHNDFEASRAGPFAAPKV 320 (549)
T ss_dssp CCCCCCCSSSSSCCCCCSBCCSSSSCCCBCCCGGGCCCCCSSSSSSCCTTTSCCSSEESCCCCTTCCBCSSSCCBCCCCC
T ss_pred HCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 10354640220588555645321378860473134345454667777863051566445577454311257885024888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 p~~~T~~~~~~~~g~~r~~~~~~~G~~~~~~~~~~~r~t~~~~~~~~g~~t~~~~iq~~~~~~~~~~~~~l~~~~~~g~~ 400 (549)
T d1mvma_ 321 PADVTQGMDREANGSVRYSYGKQHGENWAAHGPAPERYTWDETNFGSGRDTRDGFIQSAPLVVPPPLNGILTNANPIGTK 400 (549)
T ss_dssp CCCCTTTCCTTTTTCCCCCBCSTTSSCSSCCSSCCBCCCCCCSCGGGCCCSSSCCCBCSSCCSSCCSTTBCCSSSCSSSC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77766554346666600010455664434568876411210222456645761002445756786425230265677888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 t~~~~~~~~~~~~Pgsvw~n~rpIy~~gqIW~KiPd~dfkp~~p~~gGfglk~~PPPqIFIK~~PvP~dp~~p~s~~~~~ 480 (549)
T d1mvma_ 401 NDIHFSNVFNSYGPLTTFSHPSPVYPQGQIWDKELDLEHKPRLHITAPFVCKNNAPGQMLVRLGPNLTDQYDPNGATLSR 480 (549)
T ss_dssp SSCCSTTTCCCCCTTEECCCCCCCSSSCCCBCCCCCCSSCCSCCSSCSBCCSSCCCCEEEECCCCCBCSCCCSSCSSCCB
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 76233022267777556438988356788475367887678775557733567999858985566788878877655544
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 i~sYit~y~tGqvt~ewelr~~~~WNPe~q~t~~~~~~~~~~~~~~~P~~~G~~~~~~~~~r~~~~~~~ 549 (549)
T d1mvma_ 481 IVTYGTFFWKGKLTMRAKLRANTTWNPVYQVSVEDNGNSYMSVTKWLPTATGNMQSVPLITRPVARNTY 549 (549)
T ss_dssp CCEEEEEEEEEEEEEEEEBCCCCCSSCCCCCCCBSSSSSSSBGGGSSCCSSCCCCCCCCCSCCSCCCCC
T ss_pred EEEEEEEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCEEEECCCEECCCCCC
T ss_conf 146899999999999999678776487046214755568764144355677772451100200231159
|
| >d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Cytochrome c oxidase subunit I-like superfamily: Cytochrome c oxidase subunit I-like family: Cytochrome c oxidase subunit I-like domain: Bacterial ba3 type cytochrome c oxidase subunit I species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=41626.87 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~p~k~i~~~yl~~a~~~lliG~~~gll~rl~l~~p~~~~~~~~~~~~~~~Y~~~~T~Hg~~mif~f~~~~~~g~~~y~v 80 (549)
T d1xmea1 1 AYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLP 80 (549)
T ss_dssp HCTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCCCHHHHHHHSTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99702889999999999999999999999999719874433000277700340500899999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 p~~lg~r~~~~l~~~sfwl~~~g~vl~~~~~~~g~~~~gwt~Y~PL~~~~~~~ig~~l~vv~~~~~i~~~~t~~~~r~~~ 160 (549)
T d1xmea1 81 ARELNMRPNMGLMWLSWWMAFIGLVVAALPLLANEATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWRRWKAA 160 (549)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCCSTTTTCTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99819996225899999999999999999997488641022134644454301289999999999999999999966688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~Pl~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~g~d~~L~q~LFW~fGHp~Vyi~ilPa~g~~y~iip~ 240 (549)
T d1xmea1 161 NPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPK 240 (549)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCSEECHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHEEEECC
T ss_conf 97210149999999999999997240677889999864047677873244214111014663142498788772555420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~s~kplfs~~l~~~af~~i~~~~~~vg~HH~f~~~G~~~~~~~~~~~~T~~i~vPs~~~~f~~~~tl~~~~~~~~g~~~f 320 (549)
T d1xmea1 241 QAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLF 320 (549)
T ss_dssp HHTSCBSCHHHHHHHHHHHHHHSSTTGGGGCTTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCEE
T ss_conf 24440443107888899999851000365540005778889999999999999998899999999998613023786224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~Wl~tl~~~~~~~~~~~l~~~~f~~gg~tG~~~a~~~~n~~~H~T~~VvgHfH~~~~g~~~~~~~g~~y~~~P~ltGr~l 400 (549)
T d1xmea1 321 GWIRALPWDNPAFVAPVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPI 400 (549)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHTTBTHHHHHHHHHTTTHHHHHHHHTHHHHHHHHHCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHCCCCEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 44303067976789999999999851544112014328888536630003413442989999999999999899867535
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~kL~~~~fwl~~iG~~~~~~~m~~~Gl~g~pRR~~~~~~~~~~~~~~~~~~~~~igg~i~~~g~l~f~~nl~~s~~ 480 (549)
T d1xmea1 401 SDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLL 480 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSSCCGGGSGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58999999999999999999999999887626787604367731778888999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~w~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 549 (549)
T d1xmea1 481 SRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHLNPVPGWRLW 549 (549)
T ss_dssp CCCCCHHHHSSCCCCCCBCCCSSHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCEECBCCC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 477799999999871225779889997555875079999999999999889999998369999997589
|
| >d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Canine parvovirus [TaxId: 10788]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Parvoviridae-like VP domain: Parvovirus (panleukopenia virus) capsid protein species: Canine parvovirus [TaxId: 10788]
Probab=100.00 E-value=0 Score=41548.56 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 gvg~~sg~~~~~t~~k~lgd~~~~vt~~stR~~~l~~~~~~~Y~ri~~~~~~~s~~~~~~~~d~~h~~i~TPW~y~D~N~ 80 (548)
T d1c8da_ 1 GVGISTGTFNNQTEFKFLENGWVYITANSSRLVHLNMPESENYRRVVVNNMDKTAVNGNMALDDIHAEIVTPWSLVDANA 80 (548)
T ss_dssp CTTSCCCCCCCCEEEEEETTTEEEEEEEEEEEEEEECCSCSSCEEEEECCHHHHTSTTCGGGCCCEEEEEEEEEECCCCS
T ss_pred CCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCEECCEEEECCCC
T ss_conf 97656776456640467268627999867768981789985347886267677553322502554330545700171234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~hfsP~DwQ~l~n~~~~irpksl~v~i~ni~iK~Vt~~~~~~~~t~~~n~lTa~v~vf~D~~y~lPYv~~~~~~~~lp 160 (548)
T d1c8da_ 81 WGVWFNPGDWQLIVNTMSELHLVSFEQEIFNVVLKTVSESATQPPTKVYNNDLTASLMVALDSNNTMPFTPAAMRSETLG 160 (548)
T ss_dssp HHHHCCHHHHHHHHHHEEEEEEEEEEEEEEEEEEEEEECCCSTTTCCEEEECTTCCEEEEECTTCCSCCCCGGGGTCSCC
T ss_pred EECCCCHHHHHHHHHHCCCEECCEEEEEEEEEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 13146879999998732455023159999778988987346777527882577516899977887577233777777778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~lP~~~~~p~QY~Y~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Fy~LEn~~~~~~LrTGd~f~~~y~ff~~~p~~l~ 240 (548)
T d1c8da_ 161 FYPWKPTIPTPWRYYFQWDRTLIPSHTGTSGTPTNIYHGTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRLT 240 (548)
T ss_dssp SCTTSCBCCEEEEEECCCEEEECCCCTTCCSCCCEEEEECCGGGCCCCCHHHHSCEEEECTTCCEECCCEECCCCCEECC
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCEEEEECCCCCCHHCC
T ss_conf 88886655784068852454443311355555555323575556515997546656421158764025766888812204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~q~~r~m~~pP~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Nw~pGP~~~~p~n~~~~~~~~~~~~~~~g~~~~~ 320 (548)
T d1c8da_ 241 HTWQTNRALGLPPFLNSLPQSEGDTNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSAPYYSFEASTQGPFKTP 320 (548)
T ss_dssp EECCCGGGSSCCCCCSBCCCSSSTTSCCBCCSCGGGCCSCBSCTTCCCCCTTTBCCSSEESCCCCSSCEEEETTEEEECC
T ss_pred CCHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 64102455249974011100125645665201213552300023567688875546432356776541045557752413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~q~~~~~~~~~g~~~~~~~~q~g~~~~~~~~~~~~~t~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (548)
T d1c8da_ 321 IAAGRGGAQTDENQAADGNPRYAFGRQHGQKTTTTGETPERFTYIAHQDTGRYPEGDWIQNINFNLPVTNDNVLLPTDPI 400 (548)
T ss_dssp CCCCCCSCTTSCCHHHHTCCEEEECTTSSSCTTCCSSCCEEEECCCSSCCCCCGGGCCEECTTCCSSCCGGGEECTTSCB
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCEECCCCCC
T ss_conf 45786533555654567652110256788421234556446666532245444568656537841226776500025666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 gg~~~~~~~n~~n~~~P~~a~~n~~pIy~~gqIW~KiP~tD~~f~~~p~~Gg~gm~~PPpqIFIK~~P~P~~p~~~~~t~ 480 (548)
T d1c8da_ 401 GGKTGINYTNIFNTYGPLTALNNVPPVYPNGQIWDKEFDTDLKPRLHVNAPFVCQNNCPGQLFVKVAPNLTNQYDPDASA 480 (548)
T ss_dssp TTBTTCCSGGGCCCCSTTEECCCCCCEETTCCCEECCCCSSSCCSCCSSCSEECSSCCCCCEEEEECCCBCSCCCSSCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 87466344442035686212257887255788466145788885668777754058999758995467578988886766
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~S~I~qYstfq~t~~m~we~kkr~skrWNPe~q~t~~~~~~~~~~p~~~G~~~~~~~~~~~~~~~~~ 548 (548)
T d1c8da_ 481 NMSRIVTYSDFWWKGKLVFKAKLRASHTWNPIQQMSINVDNQFNYVPSNIGGMKIVYEKSQLAPRKLY 548 (548)
T ss_dssp CCCBCCEEEEEEEEEEEEEEEEECCCCSSSCCCCCCCCTTTGGGSSCCTTCCCCCCCEESCCSEECCC
T ss_pred CCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76635788989999999999874468886870440256788455551678886543012523443469
|
| >d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Urocanase superfamily: Urocanase family: Urocanase domain: Urocanate hydratase HutU species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=41332.84 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ira~~g~~~~~k~w~~ea~~rMi~NNLDp~VAe~P~eLvvYGg~G~aarnW~~~~~i~~~L~~l~~deTL~vqSG~Pvg~ 80 (545)
T d1x87a_ 1 VRPFAGTERRAKGWIQEAALRMLNNNLHPDVAERPDELIVYGGIGKAARNWECYEAIVDTLLRLENDETLLIQSGKPVAV 80 (545)
T ss_dssp CCCCCSSCCSSSSHHHHHHHHHHHHHTCSCC--------------CCSSSHHHHHHHHHHHHHCCTTEEEEEETTEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCEEEECCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEE
T ss_conf 98899984067637999999999707996683790126875575364249999999999998378875699876984066
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 f~th~~APRVliaN~~lVp~wa~~~~f~~l~~~Gl~mYGQMTAGSw~YIG~QGIvqGTyeT~~~aark~~~~~L~Gk~~v 160 (545)
T d1x87a_ 81 FRTHPDAPRVLIANSNLVPAWATWDHFHELDKKGLIMYGQMTAGSWIYIGSQGIVQGTYETFAEVARQHFGGTLAGTITL 160 (545)
T ss_dssp EECCTTSCSEEEEEEEECCGGGTTCC-----------------CCSCCCTTHHHHHHHHHHHHHHHHHHSTTCCTTCEEE
T ss_pred CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 45899997499876830577788777999996676411574420368975775014389999999998639876650899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 TaGLGGMgGAQplA~~mag~v~i~~Evd~~ri~kR~~~gylD~~~~~ldeai~~~~~A~~~~~~~SIgl~GNaadv~e~l 240 (545)
T d1x87a_ 161 TAGLGGMGGAQPLAVTMNGGVCLAIEVDPARIQRRIDTNYLDTMTDSLDAALEMAKQAKEEKKALSIGLVGNAAEVLPRL 240 (545)
T ss_dssp EECCSTTGGGHHHHHHHTTCEEEEEESCHHHHHHHHHTTSCSEEESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHH
T ss_pred ECCCCCCCCCCCHHHHHCCCEEEEEEECHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
T ss_conf 53777656555055631484399999589999999865872047388999999999998739854898734399999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 v~r~i~pDlvTDQTSaHDPl~GY~P~G~s~eEa~~lr~~dP~~f~~~v~~Sm~~Hv~Am~~l~~~G~~~FDYGNn~r~~A 320 (545)
T d1x87a_ 241 VETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAELRARDPKQYIARAKQSIAAHVRAMLAMQKQGAVTFDYGNNIRQVA 320 (545)
T ss_dssp HHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEECBCSSCHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf 97699986066655232644340799999899999866588999998998999999999999977985864557899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~aG~~~aF~~PgfVp~yirPLFc~G~GPFRWValSGdpeDi~~TD~~~~e~f~~n~~l~~WI~~A~~~~~fqGlpARI~ 400 (545)
T d1x87a_ 321 KDEGVDDAFSFPGFVPAYIRPLFCEGKGPFRWVALSGDPEDIYKTDEVILREFSDNERLCHWIRMAQKRIKFQGLPARIC 400 (545)
T ss_dssp HHTTCTTGGGSCBHHHHTTHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCCCCSSCEEEE
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 97399776667753898858876067688612442688788898899999867654577799999875263124531221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 wlg~~~R~~~~lafN~~V~~G~l~aPivigRDHlD~gs~aSP~RETe~m~DGSda~ADwpilN~~~n~a~GAtwVs~H~G 480 (545)
T d1x87a_ 401 WLGYGERAKFGKIINDMVAKGELKAPIVIGRDHLDSGSVASPNRETEGMKDGSDAIADWPILNALLNAVGGASWVSVHHG 480 (545)
T ss_dssp EECTTHHHHHHHHHHHHHHHTSSSSCEEEEECCCC-------------------CTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 06801899999999999974961378896566666656678730101477701455415999998864058708999628
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 GGVG~G~sih~G~~~v~DGs~~a~~rl~~~L~~D~~~GV~R~adAgy~~A~~~a~~~~~~~P~lk 545 (545)
T d1x87a_ 481 GGVGMGYSIHAGMVIVADGTKEAEKRLERVLTTDPGLGVIRHADAGYELAIRTAKEKGIDMPMLK 545 (545)
T ss_dssp EETTTEEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTCBCTTCC
T ss_pred CCCCEEEEEECCEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 86434026617569993396899999999723387766464110487899999998287887769
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=100.00 E-value=0 Score=41231.80 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~p~~~~~~~~~~~g~~~~~v~~f~GIpYA~pP~g~~Rf~~p~~~~~~~~~~~a~~~~~~C~Q~~~~~~~~~~~~~~~~~ 80 (544)
T d1thga_ 1 EAPTAVLNGNEVISGVLEGKVDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKANDFSPACMQLDPGNSLTLLDKALGLA 80 (544)
T ss_dssp CCCEEEETTTEEEECEEETTEEEEEEEECSCCCCGGGTTSCCCCCCSCCTTEECBSCCCBCSCCCHHHHHHHHHHHHCHH
T ss_pred CCCCEEEECCEEEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99858984997999799899699856778899998678999968888888774665699885458666632222222333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~sEDCL~LnI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvV 160 (544)
T d1thga_ 81 KVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFV 160 (544)
T ss_dssp HHSCHHHHHHHHHHTCCSCCBCSCCCEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf 35730014542224578888787488799887789887889887999526887657776678620123566516985999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 t~nYRlg~~Gfl~~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~g 240 (544)
T d1thga_ 161 SINYRTGPFGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKK 240 (544)
T ss_dssp EECCCCHHHHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEE
T ss_pred ECCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCHHH
T ss_conf 32565136656688313201333377777664444332222024567784176342351677899983867776531021
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 LF~raI~qSG~~~~~~~~~~~~~~~~~~~la~~lgc~~~~~~~~~l~cLR~~~~~~L~~a~~~~~~~~~~~~~~~~~~f~ 320 (544)
T d1thga_ 241 LFHSAILQSGGPLPYHDSSSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFG 320 (544)
T ss_dssp SCSEEEEESCCCCCCSSSCCSSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTTSCGGGTSC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 11022102465566443332004599999999829985443035566631589999999987402000135677542334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 PvvDg~~lp~~p~~~~~~g~~~~vPlliG~t~~Eg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~~~ 400 (544)
T d1thga_ 321 PRPDGNIIPDAAYELFRSGRYAKVPYISGNQEDEGTAFAPVALNATTTPHVKKWLQYIFYDASEASIDRVLSLYPQTLSV 400 (544)
T ss_dssp CCCCSSSSCSCHHHHHHTTCSCCCCEEEEEETBTTTTTGGGGTTCCSHHHHHHHHHHHTTTCCHHHHHHHHHHSCSCGGG
T ss_pred CCCCCCEEECCHHHHHCCCCCEECCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 03689536237777522687201454631025501331000156420377999998752000088999999866133222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~D~~f~~P~~~~a~~~~~~~~y~Y~f~~~~~~~~~~GA~H~~Dl~ylFg~~~~~s~~ 480 (544)
T d1thga_ 401 GSPFRTGILNALTPQFKRVAAILSDMLFQSPRRVMLSATKDVNRWTYLSTHLHNLVPFLGTFHGNELIFQFNVNIGPANS 480 (544)
T ss_dssp SSSTTCTTTTCSSSSHHHHHHHHHHHHTHHHHHHHHHHCTTSCEEEEEECTTTTTSTTTSSBTTTTHHHHHTCCCTTHHH
T ss_pred CCCHHCCCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCHHHHH
T ss_conf 56001144331128999999852203421279999998348997469873467788887863755048773998049999
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 m~~~w~nFaktGnPn~~~~~~~Wp~y~~~~~~~l~i~~~~~~~~~d~~r~e~~~~~~~~~~~~g 544 (544)
T d1thga_ 481 YLRYFISFANHHDPNVGTNLLQWDQYTDEGKEMLEIHMTDNVMRTDDYRIEGISNFETDVNLYG 544 (544)
T ss_dssp HHHHHHHHHHHSSTTSSCCSCCCCCCCTTTCEEEEECSSCEEEEESCTTHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 9999998748589878899896899889998869984899857438638999999983022029
|
| >d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein) {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Prismane protein-like superfamily: Prismane protein-like family: Hybrid cluster protein (prismane protein) domain: Hybrid cluster protein (prismane protein) species: Desulfovibrio desulfuricans [TaxId: 876]
Probab=100.00 E-value=0 Score=41159.02 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~mfC~qCeqt~~g~gCt~~GVCGk~ad~~~~rdlL~~~~~G~a~~~~har~~~~~l~~~~~~~~~~~lf~TlTnvnFd 80 (543)
T d1gnla_ 1 SNAMFCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLRAEGKAVDHRIDRLVTGNLFATITNANFD 80 (543)
T ss_dssp CCSCCBCCSTTCGGGTCBCSSCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTTBCC
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99833288764679999788716799999999999999999999999999998634004889999876552000155788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~i~~~~klr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~g~kg~~ay~~h~ 160 (543)
T d1gnla_ 81 DDILAERVRMTCAAKKELAASLTDKSGLSDAALWEASEKSAMLAKAGTVGVMATTDDDVRSLRWLITFGLKGMAAYAKHA 160 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCCTTCCHHHHCCCSSHHHHHHHHTTTSGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999986335645786244136553789997755321110358635779999874066799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~Lg~~~~ev~~~~~~al~~~~~~~~d~~~ll~~~Lr~G~~~~~~m~lld~~~~~~fG~P~pt~V~~g~~~~~nIlV~GH 240 (543)
T d1gnla_ 161 DVLGKHENSLDAFMQEALAKTLDDSLSVADLVALTLETGKFGVSAMALLDAANTGTYGHPEITKVNIGVGSNPGILISGH 240 (543)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECSCCSSCEEEEESS
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECC
T ss_conf 97499881789999999998568999999999999996120207999988888742599963473567778886999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~il~~~~~~GI~v~t~~Eml~~hg~P~~~ky~~l~g~~G~a~~~e~~~~tg~~d~iv~d~nCi~p~~~~y~~ri 320 (543)
T d1gnla_ 241 DLRDLEMLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYAHFKGNYGNAWWKQKEEFESFNGPVLLTTNCLVPPKDSYKDRV 320 (543)
T ss_dssp CHHHHHHHHHHHTTTTCEEEECGGGGGGGGSGGGGGCTTEEEECSSSGGGHHHHHHHHCSCEEESSSCCCCCCHHHHTTE
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHCCCE
T ss_conf 80789999998605995799665322420573433055034346468999999973898719954766568848857746
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~tt~~v~~pG~~hi~~~~~~~~d~a~~I~~A~~~~~~~~~~~~~~~~Gfs~e~vl~~~~~lid~I~~G~Irgvv~vvGC~ 400 (543)
T d1gnla_ 321 YTTGIVGFTGCKHIPGEIGEHKDFSAIIAHAKTCPAPTEIESGEIIGGFAHNQVLALADKVIDAVKSGAIKKFVVMAGCD 400 (543)
T ss_dssp EEETTCBCTTSEEECCSSSCCCCCHHHHHHHHTSCCCCCSCCSEEEECCCHHHHHHTHHHHHHHHHTTSCCEEEECCBCC
T ss_pred EECCCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 65577789988634788554644699999998579986878873898465899986509999998638987279996599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~eli~~d~lVlt~GC~~~~~~~~gl~~~~GiP~vL~~G~C~D~~r~~~ia~~lA~~~~~~di~dLPl~ 480 (543)
T d1gnla_ 401 GRAKSRSYYTDFAEGLPKDTVILTAGCAKYRYNKLNLGDIGGIPRVLDAGQCNDSYSLAVIALKLKEVFGLEDVNDLPIV 480 (543)
T ss_dssp CSCGGGHHHHHHHHHSCTTEEEEECSGGGGGTTTSCCCEETTEESEEECCSGGGHHHHHHHHHHHHHHTTCSCGGGSSEE
T ss_pred CCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 99876509999998766786998432666542144888657998630050564379999999999997399973547644
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~W~eqKAvai~~~~l~lGi~~i~lGp~pP~~gSp~v~~~L~e~~~l~~i~~~e~Dl~~~~ 543 (543)
T d1gnla_ 481 YNIAWYEQKAVIVLLALLSLGVKNIHLGPTLPAFLSPNVAKVLVEQFNIGGITSPQDDLKAFF 543 (543)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCCCEEESSCCTTCCHHHHHHHHHHHCCBCCCCHHHHHHHTC
T ss_pred EECHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHC
T ss_conf 440167799999999999849980566888977689889999997539886367577788539
|
| >d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfovibrio fructosovorans [TaxId: 878]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nickel-iron hydrogenase, large subunit domain: Nickel-iron hydrogenase, large subunit species: Desulfovibrio fructosovorans [TaxId: 878]
Probab=100.00 E-value=0 Score=41158.70 Aligned_cols=1 Identities=0% Similarity=-0.228 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~I~IdPitRiEGh~~l~v~vd~g~V~~a~~~~~~~RGfEk~l~Gr~~~~~~~it~RICGIC~~aH~~A~~~A 80 (543)
T d1frfl_ 1 TPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRC 80 (543)
T ss_dssp CCCCCCCEEEEESSCCSSBSCEEEEEEEETTEEEEEEEEECBCCCTHHHHTTSCGGGHHHHHGGGCSSSTTHHHHHHHHH
T ss_pred CCCCCCCCCEEECCCCCEEEEEEEEEEEECCEEEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 99887520269778773231489999983998999999036675098986799988978775034310776899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 vE~a~gi~vp~~A~~lR~L~~~~e~I~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 160 (543)
T d1frfl_ 81 VDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIDTARTGNSEKALKAVQDK 160 (543)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGTCCGGGGGTSCHHHHHHHHHHHSCCCGGGSHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99982999897899999999999999988989998625042054112323411788986245655677757889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~g~~g~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~i~~~l~G~~~h~~~~v~GGv~~~~~~~~~ 240 (543)
T d1frfl_ 161 LKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKD 240 (543)
T ss_dssp HHHHHTTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEECCCCCCHH
T ss_conf 99887504456455433457872201773321013477899999999999999997499744572586617125668999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~ 320 (543)
T d1frfl_ 241 PLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDN 320 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHHHHHHEEECCEEECTTCTTCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 99999999999999999988889999999888776517854331121234666554345664335675276452654430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~d~~~i~E~~~~s~y~~~~~~~~p~~~~t~p~~~~~~~~~~ys~~k~~~~~~~~~evGPlAR~~~~~~~~~~~~~~~~~~ 400 (543)
T d1frfl_ 321 VDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDM 400 (543)
T ss_dssp CCTTTCEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTCSSSCBSSCEEESSSSCCEESHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHCCCEEECCHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 45644364256401046766577645778777554444466302112333586011008899852010268434889987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~R~~AR~~E~~~s~~~i~~~i~~l~~~~~~~~~~~~~~~~p~~GeG~G~vEAPRG~L~H~~~i~ 480 (543)
T d1frfl_ 401 VLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGSLSHWIRIK 480 (543)
T ss_dssp HHHHHTCCSGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEE
T ss_conf 67641777665689499999999999999999999998433057778862577889997389999988870369999992
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------~ 1717 (1815)
+
T Consensus 481 ~G~I~~y~ii~PTt~N~~p~~~~~~~~~~e~al~g~~i~d~~~~~~i~~~iRs~DPC~sCa~H 543 (543)
T d1frfl_ 481 GKKIDNFQLVVPSTWNLGPRGPQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 543 (543)
T ss_dssp TTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHHHC
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 998999889887702125444445545999984799878874177786888346876042161
|
| >d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Glycosylating toxin catalytic domain-like domain: Toxin B species: Clostridium difficile [TaxId: 1496]
Probab=100.00 E-value=0 Score=41087.82 Aligned_cols=1 Identities=100% Similarity=0.004 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~q~~~~a~~~~~~~e~e~~~Il~ai~eYn~~~ekns~~~y~~l~~l~~~~d~~~~~~~~s~~~~a~~~~~~~~~ 80 (542)
T d2bvla1 1 MSLVNRKQLEKMANVRFRTQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDICIDTYKKSGRNKALKKFKEYLV 80 (542)
T ss_dssp CCCCCHHHHHHHTCCTTCCCCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98567999877620446877408999999999872764010688888899998889999997551464267888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~i~~~~~s~~~~I~K~IH~IWIgG~~Pd~~~~YI~~wl~~~~dy~~~lW~D~na~~a~~lk~~~~~~a~~~~~~~~~~~ 160 (542)
T d2bvla1 81 TEVLELKNNNLTPVEKNLHFVWIGGQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTVVESAINDTLESFREN 160 (542)
T ss_dssp HHHHHHHHHCCEECCSEEEEECCSSCCCHHHHHHHHHHHHHCTTSEEEEEECTTCTTHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999984678646875589970799972469999999987899759998788437899999999999899999999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~d~~k~~~~~~~~i~~~q~~f~Ny~~~~~~~~~~~i~dd~~~~yL~~~y~~~~e~~~~~i~~~~~~i~~~~g~DI 240 (542)
T d2bvla1 161 LNDPRFDYNKFFRKRMEIIYDKQKNFINYYKAQREENPELIIDDIVKTYLSNEYSKEIDELNTYIEESLNKITQNSGNDV 240 (542)
T ss_dssp GTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTEEEG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17851258999999999999988889999998602551001137999999999604388899999999999998731337
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~l~~~k~~~~~~~Y~~Em~lR~NyAAASDilRm~iLke~GGIYtD~D~lP~y~~~v~k~I~~~s~~~~~f~e~~k~~ai 320 (542)
T d2bvla1 241 RNFGEFKNGESFNLYEQELVERWNLAAASDILRISALKEIGGMYLDVDMLPGIQPDLFESIEKPSSVTVDFWEMTKLEAI 320 (542)
T ss_dssp GGCHHHHTSTTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHCEEEECTTCEECBCTTTTTTSCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 77675443678888899988614547678999999999809866504546411189999864335301678988888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~i~~yt~~~~d~l~e~~k~~~~~~~~~k~~~~~if~~l~d~~~~~~~~~~~~~~~~i~N~~misHkgS~~vd~VI 400 (542)
T d2bvla1 321 MKYKEYIPEYTSEHFDMLDEEVQSSFESVLASKSDKSEIFSSLGDMEASPLEVKIAFNSKGIINQGLISVKDSYCSNLIV 400 (542)
T ss_dssp HHHHCCSTTCCCTTGGGSCHHHHHHHHHHHHTCCCGGGTBCCCCSCEECTTCCEEEEETTEEEEEEEEECTTCHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99987444443002466309999999998742444666634666751100023444520014557788568858999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~q~~~Y~~l~~~l~~~v~~g~~fnsl~~~~~~~~~~~~~~~~~~f~~~~~~YrqDgi~P~a~sTL~iSGPdi~~~~~~d 480 (542)
T d2bvla1 401 KQIENRYKILNNSLNPAISEDNDFNTTTNTFIDSIMAEANADNGRFMMELGKYLRVGFFPDVKTTINLSGPEAYAAAYQD 480 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCTTTHHHHHHHTTGGGTTTSTTCCTHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 99999999999988776205532436555554100055342134178876425105721453356640385588877888
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Teee~~SsW~~n~~~~~~~~~~~~~~~~~~~ 542 (542)
T d2bvla1 481 LLMFKEGSMNIHLIEADLRNFEISKTNISQSTEQEMASLWSFDDARAKAQFEEYKRNYFEGA 542 (542)
T ss_dssp HHHTCSCCCSCCCCHHHHGGGBCCGGGEECCCTGGGSCSSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 76310256527665102322356601356867998861140135778999999997520589
|
| >d1k3va_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Porcine parvovirus [TaxId: 10796]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Parvoviridae-like VP domain: Parvovirus (panleukopenia virus) capsid protein species: Porcine parvovirus [TaxId: 10796]
Probab=100.00 E-value=0 Score=41083.40 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~v~~t~~~tr~~~l~~~~~~~y~~i~~~~~~~~~~~~~~~d~~~~~~~TPW~YfDfNa~ 80 (542)
T d1k3va_ 1 GVGVSTGTFNNQTEFQYLGEGLVRITAHASRLIHLNMPEHETYKRIHVLNSESGVAGQMVQDDAHTQMVTPWSLIDANAW 80 (542)
T ss_dssp CTTSCCSCCCCCEEEEEEGGGEEEEEEEEEEEEEEECCSCCSCEEEEECCGGGGSSSGGGGCCCEEEEEEEEEECCCCSH
T ss_pred CCCCCCCCCCCCCCEEECCCCEEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCEEEECCCCE
T ss_conf 96656675566432387368518999867779973689985258898157688753410146642225357001613330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~HFSPrDWQrLiNny~~irPksL~vkIfNIqIK~Vt~~~~~~~~t~~~NdlTa~v~VF~D~~y~lPYv~g~~q~~~~~~ 160 (542)
T d1k3va_ 81 GVWFNPADWQLISNNMTEINLVSFEQEIFNVVLKTITESATSPPTKIYNNDLTASLMVALDTNNTLPYTPAAPRSETLGF 160 (542)
T ss_dssp HHHCCHHHHHHHHHHEEEEEEEEEECEEESCCEEEEEEECSSSCEEEEEECSSCCEEEEEETTCCSCCCCSGGGTCSCCS
T ss_pred ECCCCHHHHHHHHHHCCCEECCEEEEEEEEEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 23568799999987335550230389998789889863456786288706875168999778875773458876677888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~P~~~~~lpQY~Y~~~~~~~~~~~t~~~~~~~~~d~v~~~~~~~s~Fy~LEn~~~~~~LrTGd~f~~~ty~F~~~p~~l~ 240 (542)
T d1k3va_ 161 YPWLPTKPTQYRYYLSCIRNLNPPTYTGQSQQITDSIQTGLHSDIMFYTIENAVPIHLLRTGDEFSTGIYHFDTKPLKLT 240 (542)
T ss_dssp CTTSCBCCEEEEEECCCCCBCCSCCCSSCCCCCCCBCCCCCGGGCCCCCHHHHSCEEEECTTCCEECCCEECCCCCEECE
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHEECCCCCEEEEECCCCCCCCCC
T ss_conf 99855557753366103356675212366664344323455567635997557656322268752124533787652133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~q~n~~l~~P~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nw~r~p~ig~~~p~~~~~~~s~Gp~~~~~~ 320 (542)
T d1k3va_ 241 HSWQTNRSLGLPPKLLTEPTTEGDQHPGTLPAANTRKGYHQTINNSYTEATAIRPAQVGYNTPYMNFEYSNGGPFLTPIV 320 (542)
T ss_dssp ECCCCGGGSSCCCCCSBCCSSSSTTSCCBCCCSTTCCSCCSSSSSCCCSTTCCCSSEESCCCCTTCEEEETTEEEECCCC
T ss_pred CCHHCCHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 42000221238823531757633322211357877655178457654500026888746577555544246886022357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~t~~~d~~~~~~~r~~~~~~h~~~~~~~~~~~~~t~~~~~~~gr~~~~~~~~~~~~~~~~~~n~~~~~~~~i~g~~~ 400 (542)
T d1k3va_ 321 PTADTQYNDDEPNGAIRFTMDYQHGHLTTSSQELERYTFNPQSKCGRAPKQQFNQQAPLNLENTNNGTLLPSDPIGGKSN 400 (542)
T ss_dssp CCCCCSSCCCGGGTCEECCCCTTSSSCSSCSSCSCCCEECCSSCCCCCTTTCCEECTTCCSSCCSTTEECTTCCBTTBTT
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77766765446666355640535576644567764011145422357876552430454457778764233643455456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~n~~~~~ta~~~~~piyp~gqIW~KiP~td~k~~~~~~~g~~~m~~PPpqIFIKm~pn~p~p~n~~s~~~s~i~ 480 (542)
T d1k3va_ 401 MHFMNTLNTYGPLTALNNTAPVFPNGQIWDKELDTDLKPRLHVTAPFVCKNNPPGQLFVKIAPNLTDDFNADSPQQPRII 480 (542)
T ss_dssp CCGGGTCCCCCTTEECCCCCCCBTTCCCEECCCCSSSCCSCCSSCSEECSSCCCCEEEEEECCCBCSSCCSSSSSCCBCC
T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
T ss_conf 20023324677522457787706688706504677889667767775405899986899667898999898766764111
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~y~t~y~tgqvtwe~kk~~skrWNPe~q~t~~~~~~~~~~p~~~g~~~~~p~~~~~~~~~~~ 542 (542)
T d1k3va_ 481 TYSNFWWKGTLTFTAKMRSSNMWNPIQQHTTTAENIGNYIPTNIGGIRMFPEYSQLIPRKLY 542 (542)
T ss_dssp EEEEEEEEEEEEEEEEECCCCSSSCCCCCCCCTTTGGGGSCCTTCCCCCCCBCCCCEECCCC
T ss_pred EEEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 17999999999999973578887972010345466564230268971213201344433469
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=41082.97 Aligned_cols=1 Identities=100% Similarity=0.636 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~V~~~~G~i~G~~~~~~~~~v~~f~gIpYA~pP~g~~Rf~~p~~~~~w~~~~dat~~~~~C~Q~~~~~~~~~ 80 (542)
T d2ha2a1 1 EGREDPQLLVRVRGGQLRGIRLKAPGGPVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGF 80 (542)
T ss_dssp CCSSCGGGEEEETTEEEECEEEEETTEEEEEEEEEECBCCCCGGGTTSCCCBCCCCSSEEECBSCCCEESCCCCCSSTTC
T ss_pred CCCCCCCEEEEECCEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC
T ss_conf 98779974899898889999996699837998367658999975568999889999885677568998988786667655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~sEDCL~LnI~~P~~~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYRlg~~Gfl~ 160 (542)
T d2ha2a1 81 EGTEMWNPNRELSEDCLYLNVWTPYPRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLA 160 (542)
T ss_dssp HHHHTTSCSSCEESCCCEEEEEEESSCCSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCEEEEC
T ss_conf 55434578998777589799886689887888689999877632456764455731333311311575555011114420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~~~~~~~~~ 240 (542)
T d2ha2a1 161 LPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTPNGPWATVS 240 (542)
T ss_dssp CTTCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCSSSSSSCBC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCC
T ss_conf 34445577767763589999999999987406840011011145443003344322116775323020346677755566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~a~~~~~~~~~~~g~~~~~~~~~~~~~l~cLR~~~~~~l~~a~~~~~~~~~~~~~~f~PvvDG~~lp~~p~~l~~~g~ 320 (542)
T d2ha2a1 241 AGEARRRATLLARLVGCPPGGAGGNDTELIACLRTRPAQDLVDHEWHVLPQESIFRFSFVPVVDGDFLSDTPEALINTGD 320 (542)
T ss_dssp HHHHHHHHHHHHHHTTCC------CHHHHHHHHTTSCHHHHHHHGGGGCSSSCSSCCSSCCBCCSSSSSSCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
T ss_conf 68899999998875067633355887999999972899999997751045444566565771165048887455653477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~vPiliG~~~dEg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~ 400 (542)
T d2ha2a1 321 FQDLQVLVGVVKDEGSYFLVYGVPGFSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTHLRDAMSA 400 (542)
T ss_dssp CTTCEEEEEEETBTTHHHHTTTCTTCCTTSCCCCCHHHHHHHHHHHSTTCCHHHHHHHHHHHCCTTSTTCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 43101450443642567655237543333033454899998877406430067999999971356787787999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~D~~f~~p~~~~a~~~a~~~~~vy~Y~Fd~~~~~~~~~~~~Ga~H~~Dl~ylFg~~~~~~~~~t~~d~~ls~~m~~~w 480 (542)
T d2ha2a1 401 VVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPSLNYTTEERIFAQRLMKYW 480 (542)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCEEEEEEECCCCTTCCSCGGGCSBTTTTHHHHTTGGGCGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97520346399999999986289863268732576676777688621647899729976677898989999999999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~nFaktGnPn~~~~~~~~~Wp~y~~~~~~~l~i~~~~~~~~~~~~~~~~~fW~~~~p~l~~~ 542 (542)
T d2ha2a1 481 TNFARTGDPNDPRDSKSPQWPPYTTAAQQYVSLNLKPLEVRRGLRAQTCAFWNRFLPKLLSA 542 (542)
T ss_dssp HHHHHHSCCSCSSCCSSCCCCCBCTTTCEEEEESSSCCEEEECSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99827178999877889968897699978799789977014574799999999999998668
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=0 Score=41008.05 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ 80 (541)
T d1lcia_ 1 AKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 80 (541)
T ss_dssp CTTSEECCCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 98777598998998999999999999996177998499992899918529999999999999999759599799999908
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (541)
T d1lcia_ 81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS 160 (541)
T ss_dssp SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEE
T ss_pred CCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHCCCCCCCCCEEEEECCCCCCCCCCH
T ss_conf 97999999999998590999549888999999999742660886421333221000123223320354057765433101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 240 (541)
T d1lcia_ 161 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 240 (541)
T ss_dssp HHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 45555531254332223476445887763799740355433322111221166665666530223334433322221222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~ 320 (541)
T d1lcia_ 241 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEV 320 (541)
T ss_dssp TSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 22222222222222222222222222311677876520122335764211222344210013552217886455344543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~ 400 (541)
T d1lcia_ 321 GEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN 400 (541)
T ss_dssp HHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETT
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEECC
T ss_conf 21111246775266357765247538866755687776310558977999979999599999847999913863776678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a 480 (541)
T d1lcia_ 401 NPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAA 480 (541)
T ss_dssp BHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred CHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEEEECCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEE
T ss_conf 96662210047754347995178688179993213488999999998999999998199802799999987999979999
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~~ 541 (541)
T d1lcia_ 481 VVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKK 541 (541)
T ss_dssp EEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHTC
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9997899999999999999875776456971899949878698867549999999997179
|
| >d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Glycosylating toxin catalytic domain-like domain: Alpha-toxin species: Clostridium novyi [TaxId: 1542]
Probab=100.00 E-value=0 Score=40933.96 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 l~~~~~l~~~~~~~~~~~e~ey~~il~~l~~~~~~~~~~~~~~~~~kl~~l~~~i~~y~~~~~~~~r~~al~~~~~~l~~ 80 (540)
T d2vk9a1 1 LITREQLMKIASIPLKRKEPEYNLILDALENFNRDIEGTSVKEIYSKLSKLNELVDNYQTKYPSSGRNLALENFRDSLYS 80 (540)
T ss_dssp CCCCTTTTTTSCCTTCCCCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 98789999996477776762799999999998512212228999999999999999988750043176899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~i~d~~~n~~~s~~veKniHfIWIaG~ppd~~~~YIk~wl~ty~dy~~~lW~D~nAflAakf~~~l~~~a~~~~l~~~r~ 160 (540)
T d2vk9a1 81 ELRELIKNSRTSTIASKNLSFIWIGGPISDQSLEYYNMWKMFNKDYNIRLFYDKNSLLVNTLKTAIIQESSKVIIEQNQS 160 (540)
T ss_dssp HHHHHHHHHSSSCBCCSEEEEECCSSCCCHHHHHHHHHHHHHCTTSEEEEEECTTCCCHHHHHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975411467876451048998578998555999999998689974899977418889988889999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~d~~k~y~~l~q~i~~~q~~f~~y~~~~~~~~~~D~~ri~yL~n~lk~~~e~i~~yke~~~~ki~~i~~~Di~l 240 (540)
T d2vk9a1 161 NILDGTYGHNKFYSDRMKLIYRYKRELKMLYENMKQNNSVDDIIINFLSNYFKYDIGKLNNQKENNNNKMIAIGATDINT 240 (540)
T ss_dssp GGTTTSCCSCTHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTCEEGGG
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 61576653165799999999999999999998505577525899999999977999999999999898999876402450
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~l~~~e~~~~Yq~EmlLRwNyAAASDilRm~iLke~GGIYtD~D~LP~ys~~vf~~I~~~~~~~~~f~E~~~lr~i~~~ 320 (540)
T d2vk9a1 241 ENILTNKLKSYYYQELIQTNNLAAASDILRIAILKKYGGVYCDLDFLPGVNLSLFNDISKPNGMDSNYWEAAIFEAIANE 320 (540)
T ss_dssp TTCSCHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHCEEEECTTCBSCBCGGGGGGSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 76523689999999999812636688999999999819856525556656899999986336445667656899987415
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 k~li~~~t~~~~~~l~~~~~~~l~~~i~~~~~~~iF~pl~~~~Vrd~~~iL~ry~~w~~~~~i~N~~m~shKgS~~vd~V 400 (540)
T d2vk9a1 321 KKLMNNYPYKYMEQVPSEIKERILSFVRNHDINDLILPLGDIKISQLEILLSRLKAATGKKTFSNAFIISNNDSLTLNNL 400 (540)
T ss_dssp TTCCSSCCCSSSSSSCHHHHHHHHHHHHTSCHHHHBCCCCCCBCCTTCCEEEEEECTTSCEEEEEEEEEECTTCHHHHHH
T ss_pred HHHCCCCCCCCHHHCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHH
T ss_conf 65346888733533389999999999963788761678545623641789999999860776310337517882899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 I~~q~~~Y~~L~~~i~~~i~~~~~~d~~~~sl~d~~~~~~~~~~~~~~~~f~~~~~~YrqDgi~P~a~sTL~iSGP~i~~ 480 (540)
T d2vk9a1 401 ISQLENRYEILNSIIQEKFKICETYDSYINSVSELVLETTPKNLSMDGSSFYQQIIGYLSSGFKPEVNSTVFFSGPNIYS 480 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHSCSSCCHHHHHHHTTGGGSTTBTTBTTCCGGGTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
T ss_conf 99999999999999986302354554256516777630211001234114899875354237546743577620846777
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~a~~d~~~~~~~t~~~~~~~~~~~~~~~~~~~s~~Teee~~SsW~~n~~~~~~~f~~~~~ 540 (540)
T d2vk9a1 481 SATCDTYHFIKNTFDMLSSQNQEIFEASNNLYFSKTHDEFKSSWLLRSNIAEKEFQKLIK 540 (540)
T ss_dssp HHHHHHHTTCSSCCCCCCHHHHGGGBCCGGGCBCCCHHHHHHGGGSCSTTCTTHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 777789987505403667999987334400245867998861332215777999998419
|
| >d1daba_ b.80.1.7 (A:) Virulence factor P.69 pertactin {Bordetella pertussis [TaxId: 520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Virulence factor P.69 pertactin domain: Virulence factor P.69 pertactin species: Bordetella pertussis [TaxId: 520]
Probab=100.00 E-value=0 Score=40869.44 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~i~~~G~~~~g~~~~~~~~g~~~~~~g~~i~~~g~~~~g~~~~~~g~~~~~~~~~i~~~g~~~~~~~~~~~g~~~ 80 (539)
T d1daba_ 1 DWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVT 80 (539)
T ss_dssp CCCSCEEEECSTTCCSEEECTTSCCEEEEEESCEEEECSTTCCSEEEEEEEEEEEEESCEEEECSCCBCSSSSCBCCSEE
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCEEEEECCEEEECCCCCCEEEEEECCCEEEEECCCEEEEECCCCCCCCEECCCEEE
T ss_conf 96677247854773489997047421697045399877886223799325317997151699865024433100033378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (539)
T d1daba_ 81 VKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGALQSLQPE 160 (539)
T ss_dssp EEEEEEEEESCEEEECSCTTTSCCEEEEEESTTEEEEEESCEEESTTEEEEETTCEEEEESCEECSBCEEEECSSCCSCC
T ss_pred ECCCEEEECCCEEEECCCCCCCCCEEEEECCCCEEEEECCCCEECCEEEEECCCCEEEEECCEEECCCCCCCEEECCCCC
T ss_conf 50541796064135303222233157882164237750133000202687415624665021144144432100001331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
T d1daba_ 161 DLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDALAGGAVPGGAV 240 (539)
T ss_dssp CSCCEEEEEESCEEEECTTSCCSEEEEEESSEEEEEEEEEEEECSSEEEEEESSCEEEEEEEEEESCCCCCSSSSSCSSC
T ss_pred CCCCCEEEEECCCEEEECCCCCCCCEECCCCCEEEECCCCCCCCCCCCCEEEECCEEEECCCEEEECCCCCCCCCCCEEE
T ss_conf 12464026510320100123432201112343044122221122333310000003541241466303333443221010
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (539)
T d1daba_ 241 PGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGGARRFAP 320 (539)
T ss_dssp CSCCCCSSSCCSSCCCSSCSEEEEEEESSEEEEESCEEECCSSEEEEEEETTCEEEEESSEEEEEEEEEEEEECCSSCCS
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCEEECCCCCEEEEECCCCCCC
T ss_conf 01001101222222332344321112212001333101233200100014563267505401023421010001100133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (539)
T d1daba_ 321 QAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVATELPSIPGTSIGPLDVALASQARWTGATRAVDSLS 400 (539)
T ss_dssp SSCCEEEEEETTCEEEEEEEEEECSSCCEEEEECTTCEEEEEEECCSCSSSCGGGSCCEEEEEETTCEEEECBSCEEEEE
T ss_pred CCCCCCEECCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEE
T ss_conf 44322000233211124302541243414530244303233200234444333444310244124512320245412220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tlt~~~~~g~Gt~~~nt~~~~~~sD~l~v~G~asG~~~l~v~n 480 (539)
T d1daba_ 401 IDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRN 480 (539)
T ss_dssp EESCEEEECSCEEEEEEEEETTCEEEECCCSSTTCCCEEEEEEEEECCEEEEEEEGGGTEECEEEEEEEECSEEEEEEEE
T ss_pred CCCCEEECCCCCCCEEEEECCCCEEEECCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEEE
T ss_conf 23210210367530012201321254125667774489998520441289999641678888799945547655899994
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------~ 1717 (1815)
+
T Consensus 481 ~gg~~~~~~gi~~v~~~~~~~~~f~l~~~~~~v~aGay~Y~L~~~g~~~WyL~s~~~~p 539 (539)
T d1daba_ 481 SGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPP 539 (539)
T ss_dssp CSCCCSSCCCEEEEECCSSCCCEEEECSGGGEEEETTEEEEEECCSSSEEEECCEECCC
T ss_pred CCCCCCCCCCEEEEEECCCCCCEEEEECCCCEEEECCEEEEEEECCCCCEEECCCCCCC
T ss_conf 89877677755999937887537989858871885135899998999877960578897
|
| >d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia capensis omega virus [TaxId: 12541]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Positive stranded ssRNA viruses family: Tetraviridae-like VP domain: Tetraomegavirus capsid protein species: Nudaurelia capensis omega virus [TaxId: 12541]
Probab=100.00 E-value=0 Score=40864.62 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~it~~~~~s~~p~~r~~~~~~~~~~~~SvGW~~kyLDPaGa~eS~~a~GeysKIPDGli~~SVdae~Rei~~~ecP~v~~ 80 (539)
T d1ohfa_ 1 VITFPTNVATMPEFRSWARGKLDIDQDSIGWYFKYLDPAGATESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSD 80 (539)
T ss_dssp CCSSCCCGGGCHHHHHHHHTCCCCCHHHHHHHHHHHCTTHHHHTTCCCSCTTSCSSCCCSEEEEEEEEEEEEECCTTCCS
T ss_pred CEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHCCCCEECCCCCC
T ss_conf 93057653224545423215668996533035540585544100001343255888642400011110102100788776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~PLDG~~W~Lsiis~p~fRt~~laiAn~~N~Eislev~ndli~~lNN~~~wr~~~d~~qW~~fs~~p~w~~~I~vl~~ 160 (539)
T d1ohfa_ 81 ASIPLDGAQWSLSIISYPMFRTAYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFVRIRVLHP 160 (539)
T ss_dssp SCCCCCSCEEEEEEEECCBSSEEEEEEEETTCCCCCHHHHHHHHHHHHTCSCHHHHHHSCCCEECSSSTTEEEEEEECHH
T ss_pred CCCCCCCCEEEEEEEECCHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCEEEEEEECCC
T ss_conf 53355787136777830011042346770463121156788999987611003443376001232268835999997235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 tydvPdPTdGv~~~vtdyRlTykgiT~e~N~PTLVdQG~wVgaq~~~~P~s~~~~~~~g~~~v~~~~~~~p~~~a~~~~t 240 (539)
T d1ohfa_ 161 TYDLPDPTEGLLRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEGSGFVHPFNVTRPGIAAGVTLT 240 (539)
T ss_dssp HHTSCCGGGCSCCCCSEEEEEEEEEEEEEECCGGGCCCEEEEEEECCCCEEEECSCSEEESCBCCEEEEECSSSSCEEEE
T ss_pred CCCCCCCCCCCCCCCHHEEEECCEEEEECCCCEEEECCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEE
T ss_conf 46799954343311101066202069975688014072699986079864455677555305400112369862113688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 w~~lp~gGsap~~~~a~~p~~T~g~~~~~Gg~~~p~g~vsy~vp~g~t~~~~~~t~~~~~~fa~~~dv~tf~~t~~~~gt 320 (539)
T d1ohfa_ 241 WASMPPGGSAPSGDPAWIPDSTTQFQWRHGGFDAPTGVITYTIPRGYTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGT 320 (539)
T ss_dssp ETTCCSCCBCCCCSSCCEECCSSSEEEEECCSSCCSSCEEEECCTTCCEEEEETTTTEEEEEECTTCEEEEEEEECGGGC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 77526888678788521301000037514884688760455237774033100012235665666625887134432344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 n~~~~~tap~~T~ti~~t~t~~~~v~~f~nl~~~~~~a~~r~~i~lPP~t~~q~~~n~PK~eqfl~KEt~G~y~Vh~km~ 400 (539)
T d1ohfa_ 321 NATITITAPTVTLTILATTTSAANVINFRNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTLVKDTLGSYLVHSKMR 400 (539)
T ss_dssp CEEEEEEETTEEEEEEECSSEEEEEECEEECSEEECCCCEEEEEECCCCSHHHHGGGCTTCEEEEHHHHSEEEEECCBCS
T ss_pred CEEEEEECCCCCEEEECCCCCCCCEEEECCCCHHHHHCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCEEEEHHHHC
T ss_conf 30245525875237602544566334202212222103441224469878667511587026777503575078735534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 nPVf~mTpAssfg~v~F~~pg~~~~~~~~~~ggIrDT~D~N~s~Av~Hf~sls~Scsiv~Kty~gwEgvtn~nSP~GqFA 480 (539)
T d1ohfa_ 401 NPVFQLTPASSFGAISFTNPGFDRNLDLPGFGGIRDSLDVNMSTAVCHFRSLSKSCSIVTKTYQGWEGVTNVNTPFGQFA 480 (539)
T ss_dssp SSSCCCEESCCSEEEEEECTTCCGGGSCSSSCSCCCCBCSSBCEEEEEEEEEETTCEEEEEEEEEEEEECCSSCTTGGGC
T ss_pred CCHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 80431674113451475469735011574435301001112022222100576532013462101013567899765311
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------~ 1717 (1815)
-
T Consensus 481 hsg~~k~de~l~lA~~l~~~ltgvY~a~dNfa~av~A~aa~~l~~v~ks~at~svik~~ 539 (539)
T d1ohfa_ 481 HSGLLKNDEILCLADDLATRLTGVYGATDNFAAAVLAFAANMLTSVLKSEATTSVIKEL 539 (539)
T ss_dssp EECCCCCHHHHHHHHHHHHHSCSEEEGGGCCTTHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 36887665577634457765365235655227899999999999875324550564239
|
| >d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Cytochrome c oxidase subunit I-like superfamily: Cytochrome c oxidase subunit I-like family: Cytochrome c oxidase subunit I-like domain: Bacterial aa3 type cytochrome c oxidase subunit I species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=0 Score=40782.30 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 r~~~~~wl~t~dHK~IG~~Yl~~~~~~~~~G~~~alliR~eL~~Pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (538)
T d3dtua1 1 RGFFTRWFMSTNHKDIGVLYLFTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGFFQSLWPSAVENCTPNGH 80 (538)
T ss_dssp CCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSSSBGGGGSSCHHHHHHHHTSCCCGGGCCBCHH
T ss_pred CCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 96102100047789999999999999999999999999999748863101331101111111000011121123578710
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~Yn~l~T~HG~iMiFf~v~P~l~ggfgN~lvPl~iGA~DmafPRlN~~sfWl~~~~~~l~~~s~~~~~~~~~~g~~~GWt 160 (538)
T d3dtua1 81 LWNVMITGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRMNNLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWV 160 (538)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHTTTHHHHHHHHHHTCSSCSCHHHHHHHHHHHHHHHHHHHHHTTSBCGGGSBSCCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 68898998999999999999999999999999866996310387899999998899999999883277776668877850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~y~Pls~~~~~~~vd~~i~~l~l~gissi~~~iN~i~Ti~~~R~~gm~~~~~Plf~w~~l~t~~l~l~~~PvL~~~~~~l 240 (538)
T d3dtua1 161 LYPPLSTSESGYSTDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITML 240 (538)
T ss_dssp TCTTHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45454336898509999999999999999999999999999768999722024999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~Dr~~gt~ff~~~~GgdplL~qhLFWffgHPeVYi~ilPa~Gi~s~ii~~~s~k~lfg~~~~~~a~~~i~~ls~~Vw~H 320 (538)
T d3dtua1 241 LTDRNFGTTFFQPSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVLGFVVWAH 320 (538)
T ss_dssp HHHHHSCCCTTCGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99982798532777785789999999994787024010137899999998604765547089999999999987323104
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Hmf~~g~~~~~~~~f~~~T~~IaiPs~i~vfnwl~Tl~gg~~~~~~p~l~~l~fi~~F~iGG~tGi~la~~~~d~~~HdT 400 (538)
T d3dtua1 321 HMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDT 400 (538)
T ss_dssp GCTTSSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCC
T ss_conf 64366776115536899999999978999999999998606365728999999999999740120001202543200464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 y~VvaHFH~v~~~g~v~~~~a~~y~w~Pk~tGr~~~~~l~~~hfwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~ 480 (538)
T d3dtua1 401 YYVVAHFHYVMSLGAVFGIFAGIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPEAFATW 480 (538)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSSCSCCCGGGHHH
T ss_pred EEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 12563001210208999999999999999850000578999999999999999999999987488866246781779999
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------~ 1717 (1815)
=
T Consensus 481 n~i~tiG~~i~~~g~l~f~~~~~~s~~~g~~~~~~~~w~~~a~tlEW~~~sppp~~nF 538 (538)
T d3dtua1 481 NFVSSLGAFLSFASFLFFLGVIFYTLTRGARVTANNYWNEHADTLEWTLTSPPPEHTF 538 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCSSCSSCTTCCSGGGGSCSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999999999999999999983995878998679999851388999997789
|
| >d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Gamma-glutamyltranspeptidase-like domain: Cephalosporin acylase species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=40702.66 Aligned_cols=1 Identities=0% Similarity=-1.789 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~p~~~~r~~~~~~~g~Vas~~~~as~aG~~iL~~GGNAvDAAiA~~~~l~Vv~P~~sGlGGggf~lv~~~~~~ 80 (537)
T d2nlza1 1 VMFDPQSYPYPSRRNVVYAKNGMVATSQPLAAQAGLDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALVWTKGKL 80 (537)
T ss_dssp CCSCCSCCCSCBCCCCEEESSEEEEESSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCCTBCEEEEEEEETTEE
T ss_pred CCCCCCCCCCCCCCCCEEECCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEEEEEECCCE
T ss_conf 90488889999998745878849986989999999999995899999999999999998556728656167999918968
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~id~~~~aP~~~~~~~~~~~g~~~~~~~~G~~sv~VPG~v~gl~~~~~kyG~l~w~~L~~PAI~lA~~Gf~v~~~l~~~ 160 (537)
T d2nlza1 81 HGLNGSGRAPMSLTMEAVKAKGYEQELPPYGVIPVTVPGAPGAWAELAKMYGNLPLAASLAPAIRYAEEGYPVTPTLAKY 160 (537)
T ss_dssp EEEEECCCCCTTCCHHHHHTTTCCSSCCSSSSTTCCCCCHHHHHHHHHHHHCSSCHHHHTHHHHHHHHHCEECCHHHHHH
T ss_pred EEEECCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99941664804389988962698766776566665677551589999754136641342599999875346651999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~f~~~G~~~~~Gd~~~~~~LA~TL~~Ia~~G~~~FY~G~ia~~iv~~~~~~GG~lt~e 240 (537)
T d2nlza1 161 WKAAYDRVKTEWTDDVYQPWFDTFAPKGRAPRVGEVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKE 240 (537)
T ss_dssp HHHHHHHHHHHCCSSTTHHHHHHHCTTSSCCCTTCEECCHHHHHHHHHHHTTTTHHHHHSHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHH
T ss_conf 99999986301210234457775174898899988775521568999986227630147832676765411678640188
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 DL~~Y~~~~~~Pl~~~y~~~~i~~~ppps~G~~~l~~L~ile~~~~~~~~~~~~~h~~~Ea~k~a~~dr~~~~~dp~~~~ 320 (537)
T d2nlza1 241 DLACYRPEWVEPISIDYRGYRVWEIPPNGQGLVALEALNIVKGFEFYHKDTVDTYHKQIEAMKLAFVDGMKYVTEPSDMS 320 (537)
T ss_dssp HHHTCCCEEECCEEEEETTEEEEECCTTBTTHHHHHHHHHHTTSCCSCSSSHHHHHHHHHHHHHHHHHHHHHCSSGGGCS
T ss_pred HHHCCCCCEECCEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89507761116558705786996048998124443221001223322222136789999987777776653124534310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~lls~~~~~~~~~~i~~~~~~~~~~~~~~~~Tth~svvD~~GnaVs~T~Si~~~FGSg~~~~~tGi~lNN~m~~f~ 400 (537)
T d2nlza1 321 VSVEQLLSDEYATERRKEIGEQALTPEPGTPPRGGTVYLATADGDGNMVSFIQSNYMGFGSGVVVPGTGIAMQNRGHNFS 400 (537)
T ss_dssp SCHHHHTCHHHHHHHHTTCCSSCCCCCCCCC----CEEEEEEETTSCEEEEEEECSSTTCSSCEETTTTEEBCCGGGGSB
T ss_pred HHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 11101332046677663002043304789988898679999848997898723666777885475798730135555533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~n~~~PgkRp~ssm~Ptiv~~~~~~~l~~Gs~GG~~i~~~~~qvl~~~l~~~~~l~~Ai~~PR~h~~~~~~v~~E 480 (537)
T d2nlza1 401 LDPNHDNALKPGKRTYHTIIPGFLTKNDQPIGPFGVMGGFMQPQGHMQVMMNTIDFGLNPQAALDAPRWQWTNGKQVQVE 480 (537)
T ss_dssp CCTTSTTBCCTTCCCCBCCCCEEEEESSCEEEEEEECSGGGHHHHHHHHHHHHHTTCCCHHHHHHSCCEEECSSSEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEECCCCEEEEC
T ss_conf 34343321699862033234210013797469998998403889999999999966999999984756253699979980
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~v~~~L~~~Gh~v~~~~~~~~~g~v~ai~~~~~~g~~~g~sDpR~~G~a~g~ 537 (537)
T d2nlza1 481 PTFPVDIAQALVRRGHKIQVVLDEGAFGRGQIIWRDPTTGVLAGGTEPRTDGQVAAW 537 (537)
T ss_dssp TTSCHHHHHHHHHTTCEEEECCCTTTTCCEEEEEECTTTCCEEEEECTTSSCEEEEC
T ss_pred CCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCCEECCC
T ss_conf 899999999999869944881578886307999998999989999589999754709
|
| >d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Fatty acid amide hydrolase (oleamide hydrolase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=40702.07 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~ 80 (537)
T d1mt5a_ 1 ARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTS 80 (537)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 95145556640012188999999863005999886789868299999999759998999999999999997887688988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~a~~~~~gpL~GvPi~vKD~~~~~g~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~ 160 (537)
T d1mt5a_ 81 YLTDCETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDC 160 (537)
T ss_dssp ECTTCSHHHHTCCTTSTTTTCEEEEETTSCCBTSBCCSSCGGGSSCBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSC
T ss_pred CCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCH
T ss_conf 09889999975999898588968767362767976376696456999984389999998578777303233332234421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~n~~~G~t~NP~~~~~~~GGSSgGsaaavaag~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~ 240 (537)
T d1mt5a_ 161 SNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAV 240 (537)
T ss_dssp CCTTTCCCCCSSCTTSCCCSSSHHHHHHHGGGSCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSS
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 23220013444455534678767864322023410354322264531025532750232131135788978754455444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~d~~GpmaRsv~D~a~~l~~l~g~d~~d~~~~~~~~~~~~~~~~~~k~lRIg~~~~~~~~~~~p~v~~a~~~a~~~L~~~ 320 (537)
T d1mt5a_ 241 QLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAA 320 (537)
T ss_dssp CCEEEEEESSHHHHHHHHHHHSSHHHHHSCTTSCCCCCCHHHHSCCSCCEEEECSCCSSSCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 45678863328899999987517886444334575014555420010020222125444534489999876557764366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Ga~Vvev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (537)
T d1mt5a_ 321 GHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSM 400 (537)
T ss_dssp TCEEEECCCTTHHHHHHTTHHHHHSTTTTHHHHGGGTTCCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 62698568852677888888999999999998765304543336899999874036789999987501028899998722
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvll~Pt~~pa~~~~~~~~~~~~~~~T~~~NllG~PaisvP~g~v~~~~ 480 (537)
T d1mt5a_ 401 RPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAED 480 (537)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSCCCSSCGGGCGGGGHHHHHHHHTTCCEEEEEEEECCTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 52209999999999999999999998666998899699888667687255424621689899858996999767666433
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------~ 1717 (1815)
+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L~ 537 (537)
T d1mt5a_ 481 DAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMT 537 (537)
T ss_dssp TTGGGSCCCSSCSHHHHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 211001223333211111234557899988767778999999999999999999769
|
| >d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nickel-iron hydrogenase, large subunit domain: Nickel-iron hydrogenase, large subunit species: Desulfovibrio desulfuricans [TaxId: 876]
Probab=100.00 E-value=0 Score=40697.00 Aligned_cols=1 Identities=0% Similarity=-0.228 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~I~I~P~tRiEGh~~l~v~~d~g~V~~a~~~~~~~RGfEk~l~Gr~~~~~~~it~RICGIC~~sH~~a~~~A 80 (537)
T d1e3db_ 1 TPRSNYTGPIVVDPLTRIEGHLRIEVEVEGGVIKEARSCATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRC 80 (537)
T ss_dssp CCCCCCCEEEEESSCCSSBSCEEEEEEEETTEEEEEEEEECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHH
T ss_pred CCCCCCCCCEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECCCHHHHHHCCCCHHHHHHHHCCHHEECHHHHHHHHHHH
T ss_conf 99788640259878663233589999982998999999220463198986799978977663412140886899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 vE~a~gi~~P~~a~~lR~L~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (537)
T d1e3db_ 81 LEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAVQAKLK 160 (537)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGSCHHHHHHHHHHHCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99980999998899999999999999999999998725211034334435736799986402752246388999877777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~g~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~l~al~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~l~~~~l 240 (537)
T d1e3db_ 161 TFVASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEALTPERI 240 (537)
T ss_dssp HHHHTSCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEECCCCCCHHHH
T ss_conf 77653013765320002676201367022146788899999999999999998617877703143475612666999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~l~~~~~~~e~~~~~d~~~~~~~~~~~~~~g~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~ 320 (537)
T d1e3db_ 241 KQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFMAFGEFPAPGGERDLNSRWYKPGVIYDRKVGSVQPFDPS 320 (537)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGGSSCCSCEEEEEECCCTTCTTCGGGSSEEEEEECTTCGGGCBCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHH
T ss_conf 99999999999999998889999999876668752784540223353466655421220126866882577730125688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~i~e~v~~s~y~~~~~~p~~~~t~P~~~~~~~~~~ys~~k~~~y~g~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~ 400 (537)
T d1e3db_ 321 KIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLN 400 (537)
T ss_dssp GEEEECTTBTBCSCCBCGGGCCCCBCCCCTTCSSSCBSSCEEEETTBCCBCSHHHHHHHHHHTTCTTHHHHHHHHHHHHT
T ss_pred HCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCC
T ss_conf 64145642330566668866765677433453335420224111488653469988762555475000066788998719
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~R~~aR~~E~~~~~e~~~~~l~~l~~~~~~~~~~~~~~~~p~~G~G~G~vEAPRG~L~H~~~~~~G~I~~ 480 (537)
T d1e3db_ 401 LGPEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVKDKQIVEDYAVPTSARGVGFADVSRGGLSHWMTIEDGKIDN 480 (537)
T ss_dssp CCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEETTEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEE
T ss_conf 88655788175499999999999999999998776258889823177889998679999998786589999983998989
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------~ 1717 (1815)
+
T Consensus 481 ~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~~~d~~~~~~i~~~iRs~DPC~sCa~H 537 (537)
T d1e3db_ 481 FQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIACSTH 537 (537)
T ss_dssp EEEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHHHC
T ss_pred EEEECCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999897710046320146642999984899878853065565786216765010062
|
| >d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: alpha-D-glucuronidase/Hyaluronidase catalytic domain domain: alpha-D-glucuronidase catalytic domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=40638.05 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~lR~lNhWDNldgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINgvviNNVNa~~~~~~lLt~~~l~~v~~iA 80 (536)
T d1l8na1 1 RLRMINHWDNMDGSIERGYAGRSIFFVDDQFVKQNQRIKDYARLLASVGINAISINNVNVHKTETKLITDHFLPDVAEVA 80 (536)
T ss_dssp SEEEEECCBCTTSCBTTCCSCSCSSEETTEEC--CHHHHHHHHHHHHTTCCEEECSCSSCCTTGGGGGSTTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 95331233378986632547652043689755442689999999862276528861246776654316987888899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 dvfRpYGIkv~LS~nFasP~~lGgL~TaDPLDp~V~~WW~~k~~eiY~~IPDfgGflVKAnSEGqPGP~~YgRthAdGAN 160 (536)
T d1l8na1 81 DIFRTYGIKTFLSINYASPIEIGGLPTADPLDPEVRWWWKETAKRIYQYIPDFGGFVVKADSEFRPGPFTYGRDHAEGAN 160 (536)
T ss_dssp HHHHHTTCEEEEEECTTHHHHTTCCSCCCTTSHHHHHHHHHHHHHHHHHCTTCCEEEECCSBTTBCCGGGGTCCHHHHHH
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 98752242699995036864258988789998689999999999999858874565773378999995545886113567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 mlA~Al~P~GGiV~wRaFVY~~~~dw~d~~~DRakaAyd~F~pLDG~F~dNVivQiKnGPiDFQ~REP~sPLFgam~~T~ 240 (536)
T d1l8na1 161 MLAEALAPFGGLVIWRCFVYNCQQDWRDRTTDRAKAAYDHFKPLDGQFRENVILQIKNGPMDFQVREPVSPLFGAMPKTN 240 (536)
T ss_dssp HHHHHHGGGTCEEEEECCCCCTTCCTTCTTCCGGGHHHHHHGGGTTCSCTTEEEEEESSSSSSCSSCCCCTTTTTCTTSC
T ss_pred HHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 89987277687799998762365555667405788899753588876445669996358856631688864431777776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~E~QITQEYlGqq~Hl~YL~Plwke~L~fDt~~~g~~s~V~~iv~G~~~~~~~~g~agV~NiG~d~nWtGh~laqANl 320 (536)
T d1l8na1 241 QMMEVQITQEYTGQQKHLCFLIPQWKEVLDFDTYAKGKGSEVKKVIDGSLFDYRYSGIAGVSNIGSDPNWTGHTLAQANL 320 (536)
T ss_dssp EEEEEECSCTTTTTTTSCCCCHHHHHHHHTCBCCTTSSSCBHHHHHTSTTTTCSSCEEEEECCCCSSTTSSSSGGGHHHH
T ss_pred CEEEEEECHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 03677721001375133011116889886133413589970210203542477665179975147788866654456665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 YafGRLAWdp~~~se~I~~eW~rlTFg~d~~v~~~i~~m~m~Sw~aye~Yt~pLGl~~~~~~~~HYGP~p~~~~~~~Wg~ 400 (536)
T d1l8na1 321 YGFGRLAWNPDLSAEEIANEWVVQTFGDDSQVVETISWMLLSSWRIYENYTSPLGVGWMVNPGHHYGPNVDGYEYSHWGT 400 (536)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHSSCTTCCCCBCTTTCCSBCTTTTTTSSSSC
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 56532024898999999999998645898128899999987668999752777554024068876799988777889863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 yh~AD~~giG~DRTv~tGtg~~~QY~~~~a~~ye~~~tcPdelLLwFHHVpy~h~L~SGkTviq~~yd~h~~Gv~~v~~~ 480 (536)
T d1l8na1 401 YHYADRDGIGVDRTVATGTGYTAQYFPENAAMYESLDTCPDELLLFFHHVPYTHRLHSGETVIQHIYNTHFEGVEQAKQL 480 (536)
T ss_dssp CCCCCSSEECCCCCTTTSCCGGGGSCHHHHHHHHSTTTSCGGGHHHHCCEETTCBCTTSCBHHHHHHHHHHHHHHHHHHH
T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 33457864065457778889500279689987178033945673000148866664897689999999999999999999
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~W~~L~g~iD~~rf~~V~~rL~~Q~~~A~~WRDai~~yf~~~Sgipd~~gR~i~ 536 (536)
T d1l8na1 481 RKRWEQLKGKIDEKRYHDVLERLTIQVEHAKEWRDVINTYFYRKSGIDDQYGRKIY 536 (536)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCCCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999855428989999999999999988999999999998865399843588589
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=40625.48 Aligned_cols=1 Identities=0% Similarity=-0.627 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i 80 (536)
T d1mdba_ 1 MLKGFTPWPDELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (536)
T ss_dssp CCTTCCCCCHHHHHHHHHTTSSCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98998789999999998769989997999999999877997599989976849999999999999999759688699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T d1mdba_ 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (536)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EECCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 93897999999999998594999559878999999999741013673242001222223332210100233320232022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~ 240 (536)
T d1mdba_ 161 EEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSS 240 (536)
T ss_dssp TTSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHS
T ss_pred CCCCCHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 23452222035776787667544677641246631100010122222222222222222344333222223332222000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~ 320 (536)
T d1mdba_ 241 PGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320 (536)
T ss_dssp SHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
T ss_conf 11223123554223568899899999976520233222211466654301333225675505998413334443210121
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~ 400 (536)
T d1mdba_ 321 VFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNA 400 (536)
T ss_dssp HTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 25732210234332112332112112345677556777862479976989760342243141378864332002332331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~ 480 (536)
T d1mdba_ 401 ASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD 480 (536)
T ss_dssp HHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECC
T ss_conf 12235675335752110699866647875508998999998899999998399825799999886889859999999799
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l~ag 536 (536)
T d1mdba_ 481 EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536 (536)
T ss_dssp SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999999973699867585589998987869886752999999999887279
|
| >d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Human parvovirus B19 [TaxId: 10798]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Parvoviridae-like VP domain: Parvovirus (panleukopenia virus) capsid protein species: Human parvovirus B19 [TaxId: 10798]
Probab=100.00 E-value=0 Score=40624.14 Aligned_cols=1 Identities=0% Similarity=-0.693 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~W~~gs~~~~~~VtT~~TRt~~Lp~~n~h~Yk~i~~~~~~~tn~~g~~~~~~~~~~~~G~sTPW~YfDfN~~~~h 80 (536)
T d1s58a_ 1 NPVKSMWSEGATFSANSVTCTFSRQFLIPYDPEHHYKVFSPAASSCHNASGKEAKVCTITPIMGYSTPWRYLDFNALNLF 80 (536)
T ss_dssp CCCCCCCCCEEEEETTEEEEEEEEEEEECCCSCCCBTCCCCSCSSSSSSCCSSSSTTCCSCCCCEECSCCCCCCCBHHHH
T ss_pred CCCCCEEECCCEECCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEECC
T ss_conf 96354773688877997898765789961678840478734666664455652222445651412177532724350303
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 FSPrDWQrLiNn~~~irPksL~vkIfNIqVKeVT~~~~~~tt~~NdLTatv~Vf~D~~y~lPYV~g~~~e~~lp~~P~~v 160 (536)
T d1s58a_ 81 FSPLEFQHLIENYGSIAPDALTVTISEIAVKDVTDKTGGGVQVTDSATGRLCMLVDHEYKYPYVLGQGQDTLAPELPIWV 160 (536)
T ss_dssp SCTHHHHHHHHHCSCBCEEEEEEEECSCCCEEEECCSSSCCEECCCSSCCBCBEECSSCCSCCCTTSCCSSSSCSSSSCC
T ss_pred CCHHHHHHHHHHCCCEECCEEEEEEEEEEEEEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68899999987234550132589997789889886289963871576407899976887567344888777788898744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~lPQYgY~t~~~~~~~~~t~~~~~~~~~~s~Fy~LEn~p~qmLRTGd~f~~~y~F~d~p~~sl~~~sQsl~~l~NPL~~ 240 (536)
T d1s58a_ 161 YFPPQYAYLTVGDVNTQGISGDSKKLASEESAFYVLEHSSFQLLGTGGTATMSYKFPPVPPENLEGCSQHFYEMYNPLYG 240 (536)
T ss_dssp CCCCCCEECCCCEEECCSSSSCCEEECCTTCCCCCTTSSCCBCCCSSCCEEEEEECCCCCCBCCCEESSCGGGCSCTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 55675078872455666656762133356642689626708850068751577666888840054556586786098742
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 s~l~~~~~~~g~~~~~~~~~~~~~~~~~Nw~pGP~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~pgp~~~~~~ 320 (536)
T d1s58a_ 241 SRLGVPDTLGGDPKFRSLTHEDHAIQPQNFMPGPLVNSVSTKEGDSSNTGAGKALTGLSTGTSQNTRISLRPGPVSQPYH 320 (536)
T ss_dssp CSCCCCSCSSSCCCCCCCTTCCTTCSCCSSCCCCCCCCCCCC-------------CCCSCCCSSSSSCCCCCCCTTSCSC
T ss_pred CCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 10035761168654543144550114545457887676433345557767765423443221368630304787755565
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~~~~~~~~PG~VW~~r 400 (536)
T d1s58a_ 321 HWDTDKYVTGINAISHGQTTYGNAEDKEYQQGVGRFPNEKEQLKQLQGLNMHTYFPNKGTQQYTDQIERPLMVGSVWNRR 400 (536)
T ss_dssp EESSSCEECCSSCCBSSCCCSSCCCSCCSSCSBSCCCSTGGGSCSSCCCCCCCSSCSSSCCCCCCSSCCCCCTTCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55544435665422344225664332221234663478333024568852253224456664555443446766415799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 piy~qgqIW~KiP~tD~~f~ps~p~lGgfglk~PPpqIFIK~~P~p~P~~~~~~~~~s~l~qYstgqvtv~i~we~~~r~ 480 (536)
T d1s58a_ 401 ALHYESQLWSKIPNLDDSFKTQFAALGGWGLHQPPPQIFLKILPQSGPIGGIKSMGITTLVQYAVGIMTVTMTFKLGPRK 480 (536)
T ss_dssp CCCSSCBCCBCCCSCSCCSSTTBCTTSSBBCSSCSCCEECCBCCCEECCSSSSCCCCEECCEEEEEEEEEEEEECCCCCC
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCC
T ss_conf 83667873663547888758878767755578999817985677898955567776530488887789999999981244
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~skRWNPEp~~~~~~~~~~~p~~ly~~~~~~~~~~~~~~y~~~~~~w~~~~~~~~l 536 (536)
T d1s58a_ 481 ATGRWNPQPGVYPPHAAGHLPYVLYDPTATDAKQHHRHGYEKPEELWTAKSRVHPL 536 (536)
T ss_dssp CCCCCSCCCCCCCCCBTTBCSSSCCCSTTCCSSSCCCCSSCCCSSCCCSCCSEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 78877989999998767888868844644435777755523736881501442569
|
| >d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Oligo-peptide binding protein (OPPA) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=40542.33 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~p~~~dP~~~~~~~~~~~~~iy~~L~~~d~~~~~~~P~LA~~~~~~~d~t~tf~LR~g~~fsDG~p 80 (535)
T d1vr5a1 1 ERNKTLYWGGALWSPPSNWNPFTPWNAVAGTIGLVYEPLFLYDPLNDKFEPWLAEKGEWVSNNEYVLTLRKGLRWQDGVP 80 (535)
T ss_dssp CGGGEEEEESSCCSCCCCCCTTCTTTSCTTTBTTTBCCSEEEETTTTEEEESSEEEEEEEETTEEEEEECSSCBCTTSCB
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEECCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCC
T ss_conf 98755999165147998768767787177799988442010879989496400788478789989999599399889299
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 vTA~Dv~~s~~~~~~~~~~~~~~~~~~i~~i~~~d~~tv~i~l~~p~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 160 (535)
T d1vr5a1 81 LTADDVVFTFEIAKKYTGISYSPVWNWLGRIERVDERTLKFVFSDPRYQEWKQMLINTPIVPKHIWENKTEEEVLQAANE 160 (535)
T ss_dssp CCHHHHHHHHHHHHHCTTSTTGGGGGTEEEEEEEETTEEEEEESSCCHHHHHHHHHHCCCCCHHHHTTCCHHHHHHCCCS
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCEEEEEEEECCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCC
T ss_conf 85999999999873346865245640454143042887999985036411111134410143021021002122245577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~pvgtGPy~l~~~~~~~~~l~rn~~Y~~~~~~~~~p~~d~I~~~~~~~~~~~~~a~~~G~iD~~~~~~~~~~~~~~~~~~ 240 (535)
T d1vr5a1 161 NPVGSGPYYVESWADDRCVFKKNGNWWGIRELGYDPKPERIVELRVLSNNVAVGMLMKGELDWSNFFLPGVPVLKKAYGI 240 (535)
T ss_dssp SCCCSSSEEEEEEETTEEEEEECTTCHHHHHHCCCCCCSEEEEECCSCHHHHHHHHHHTSCCEECSCCTTHHHHHHHTCC
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCHHHHHHHCCCC
T ss_conf 86326844455521222323346433565433457653101221234431013566405531331567315566530365
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~vRqAl~~aIDr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (535)
T d1vr5a1 241 VTWYENAPYMLPANTAGIYINVNKYPLSIPEFRRAMAYAINPEKIVTRAYENMVTAANPAGILPLPGYMKYYPKEVVDKY 320 (535)
T ss_dssp BCSSSSTTCSEEEEEEEEEECTTSTTTTCHHHHHHHHHHCCHHHHHHHTTTTSSEECCTTCCCSSHHHHTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 31012343235776126765215777768887534330379999999998415654322343222465556773212345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~d~~kA~~lL~~aG~~~~~~~g~~~~~~g~~l~~~i~~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~~~~~~~~~~~~ 400 (535)
T d1vr5a1 321 GFKYDPEMAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSIAEDLVKVGINVEPKYPDYSKYADDL 400 (535)
T ss_dssp CCCSCHHHHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEECCTTCHHHHHHHHHHHHHHHTTTCCEEEECCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 53349788898999738655577664123665654322336788678999999999998753445432210013433333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~y~d~~~d~Ll~~a~~~~d~~~r~~~~~~~~~~l~e 480 (535)
T d1vr5a1 401 YGGKFDLILNNFTTGVSATIWSYFNGVFYPDAVESEYSYSGNFGKYANPEVETLLDELNRSNDDAKIKEVVAKLSEILLK 480 (535)
T ss_dssp HHTCCSEEEECSSCBCCSCHHHHHHHHHCGGGGTSSSCSSSCTTCCCCHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 12103356434457888876776543116542123677887666659899999999987159999999999999999997
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~iPl~~~~~~~~~~~~v~~~~p~~~~p~~~~~~~~~ww~~~~~~~~~~~~~~ 535 (535)
T d1vr5a1 481 DLPFIPLWYNGAWFQASEAVWTNWPTEKNPYAVPIGWNGWWQLTGIKTLFGIEAK 535 (535)
T ss_dssp HCSEEEEEEEEECCEECCSSEECCCBTTBCSSCCCCSTTTGGGTGGGHHHHCEEC
T ss_pred CCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCC
T ss_conf 4989999974709999865055899987886466874475376468897378999
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=40470.15 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~p~~~~~~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~ 80 (534)
T d1v25a_ 1 AFPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE 80 (534)
T ss_dssp CCBCCBCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHH
T ss_conf 98986478998899999999997599729999069936897299999999999999997796887999999089899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (534)
T d1v25a_ 81 AYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEE 160 (534)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSC
T ss_pred HHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99999984929995099999999999997410333235520112477775025654225775035310000001123445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~ 240 (534)
T d1v25a_ 161 ADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQ 240 (534)
T ss_dssp CCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCEE
T ss_conf 55334356771799974378888652102244166531100000023544466343236424414310000001203125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~t 320 (534)
T d1v25a_ 241 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLT 320 (534)
T ss_dssp EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECG
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEEECCCC
T ss_conf 62143333100000112124443346715666666542024455443149999468788789999998498236503654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~ 400 (534)
T d1v25a_ 321 ETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA 400 (534)
T ss_dssp GGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEECCCHHHHHHH
T ss_conf 33561220346765556673113566664000137838999999999977899806899975786466124882551230
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~ 480 (534)
T d1v25a_ 401 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEK 480 (534)
T ss_dssp BCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC------
T ss_pred CCCCCCCCCCCEEEECCCCCEEEECCCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 53689875696648989914899136564799899999889999999819981469999998799996999999968999
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000235 1717 -----------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~~~~~ 534 (534)
T d1v25a_ 481 PTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGGA 534 (534)
T ss_dssp -------------CCCTTTSCSBC--------------CCTTHHHHSTTSSCCC
T ss_pred CCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 998999999998369967786389997987879885642999999997656759
|
| >d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nickel-iron hydrogenase, large subunit domain: Nickel-iron hydrogenase, large subunit species: Desulfovibrio vulgaris [TaxId: 881]
Probab=100.00 E-value=0 Score=40466.46 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~i~IdPitRiEG~~~l~l~~d~g~V~~a~~~~~~~RGfEk~l~gr~~~d~~~it~RICGiC~~aH~~a~~~AvE~ 80 (534)
T d1wuil1 1 SSYSGPIVVDPVTRIEGHLRIEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVDN 80 (534)
T ss_dssp CCCCEEEEESSCCSSBSCEEEEEEEETTEEEEEEEEECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHH
T ss_pred CCCCCCEEECCCCEEEEEEEEEEEEECCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHCCCEEECHHHHHHHHHHHHHH
T ss_conf 98566479778562654589999983998999998245663198986799978966553410031786899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 a~Gi~vP~~a~~lR~L~~~~e~I~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (534)
T d1wuil1 81 AVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTFV 160 (534)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 93998798899999999999999999999998745300245323335757799987531653234267999889998887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~i~~~~~G~~~h~~~~~pGGv~~~~~~~~~~~~~~ 240 (534)
T d1wuil1 161 ETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQRIAEF 240 (534)
T ss_dssp HTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGSHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 64114776654345787513467010113567899999999999999999828874445210265225788998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~G~~~~~~~~~~~~~d~~~i~e~ 320 (534)
T d1wuil1 241 EALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFFKPGVVFKRDFKNIKPFDKMQIEEH 320 (534)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEEEEEEEESTTCTTSCBCCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHCEECCCEEECCCCCEECCCCHHHHEEC
T ss_conf 99999999999998888999987754015651786441201004565553011210375688687651124572561014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 v~~s~y~~~~~~~P~~~~t~p~~~~~~~~~~ysw~kapry~g~~~evGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (534)
T d1wuil1 321 VRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPE 400 (534)
T ss_dssp CTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGG
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 71887447754576667777663334655553231155227853030288999866553382116787878985298865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~R~~aR~~E~~~s~~~~~~~l~~l~~~~~~~~~~~~~p~~~p~~GeG~g~vEApRG~L~H~~~i~~G~I~~y~i 480 (534)
T d1wuil1 401 ALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIEDGKIGNFQL 480 (534)
T ss_dssp GGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSSEEEEEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCEEEEEEE
T ss_conf 56888999999999999999999999997464034578640278779997189999988874289999980998989889
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000235 1717 -----------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------~ 1717 (1815)
+
T Consensus 481 i~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~i~~~iRsfDPCisCa~H 534 (534)
T d1wuil1 481 VVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIACGVH 534 (534)
T ss_dssp ECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHHHC
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 797701055333245544999982799878863066565664005786153262
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=100.00 E-value=0 Score=40461.44 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~p~~~~~~g~~~~~~~~~~~~~f~GIpYA~pP~g~~Rf~~p~~~~~~~~~~~at~~~~~C~Q~~~~~~~~~~~~~~~~~~ 80 (534)
T d1llfa_ 1 APTAKLANGDTITGLNAIINEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTSYGPSCMQQNPEGTFEENLGKTALDL 80 (534)
T ss_dssp CCEEECTTSCEEECEECSSCEEEEEEECBCCCCGGGTTSCCCBCCSCCTTCBCBSCCCBCCCCCTTCCSSCCHHHHHHHH
T ss_pred CCEEEECCCCEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99699579988996207473787648888999987799999889888886235667998867587766322245543221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~sEDCL~LnI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~ 160 (534)
T d1llfa_ 81 VMQSKVFQAVLPQSEDCLTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVAS 160 (534)
T ss_dssp HHHSHHHHHHSCBCSCCCEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCHHHHCCCCEEEEEEECCCCC
T ss_conf 12343346789988869978988789988899975999977886556888778831013422431588689986448876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~GFl~~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~q 240 (534)
T d1llfa_ 161 WGFLAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQ 240 (534)
T ss_dssp HHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf 42467753234456422216778899988765543115876224156660488999998324455431000333255535
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 SGs~~~~~~~~~~~~~~~~~~la~~lGc~~~~~~l~cLR~~~a~~L~~a~~~~~~~~~~~~~~~~f~PviDG~~lp~~p~ 320 (534)
T d1llfa_ 241 SGAMVPSDPVDGTYGNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNNTPGFLAYSSLRLSYLPRPDGKNITDDMY 320 (534)
T ss_dssp SCCSCCCCCTTSHHHHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHTSCCTTSTTTTSCSSCCCCCSSSSCSCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 67645676554266666556777640256743222224579999999998724320024666540211003456777866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~l~~g~~~~vPlliG~~~dEg~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~~~~~~~~~~~~~~~~~~ 400 (534)
T d1llfa_ 321 KLVRDGKYASVPVIIGDQNDEGTIFGLSSLNVTTNAQARAYFKQSFIHASDAEIDTLMAAYPQDITQGSPFDTGIFNAIT 400 (534)
T ss_dssp HHHHTTCSCCCCEEEEEETBTTHHHHGGGTTCCSHHHHHHHHHHHCTTCCHHHHHHHHHHSCSCGGGSSSTTCTTTTBSS
T ss_pred HHHHCCCCCCCEEEEEEECCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCCCHHHCCCCCCC
T ss_conf 68645774233058753247634430245773037789999987401137899999998660223102511210123322
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~D~~f~~p~~~~a~~~~~~~~y~y~~~~~~~~p~~GA~H~~EL~y~f~~~~~~s~~m~~~w~nFaktGnP 480 (534)
T d1llfa_ 401 PQFKRISAVLGDLAFIHARRYFLNHFQGGTKYSFLSKQLSGLPIMGTFHANDIVWQDYLLGSGSVIYNNAFIAFATDLDP 480 (534)
T ss_dssp SSHHHHHHHHHHHHTHHHHHHHHHHCCSSCEEEEEECTTTTCTTTSSBTTHHHHHHHTCCCTTHHHHTHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999865355212999999983589840686224789998887074402364678653999999999998141779
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000235 1717 -----------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------~ 1717 (1815)
.
T Consensus 481 n~~~~~~~Wp~y~~~~~~~~~~~~~~~~~~~~~~d~~R~~~~d~l~~n~~~~~~ 534 (534)
T d1llfa_ 481 NTAGLLVNWPKYTSSSQSGNNLMMINALGLYTGKDNFRTAGYDALMTNPSSFFV 534 (534)
T ss_dssp GGGCCSSCCCCBCCTTCSSCCEEEEETTEEEEECSCSCHHHHHHHHSSGGGGCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCHHHHHHHHHHHHCCHHHCC
T ss_conf 999998999999998877766998279885441455999999999833075219
|
| >d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype B [TaxId: 1491]
Probab=100.00 E-value=0 Score=40397.80 Aligned_cols=1 Identities=100% Similarity=2.530 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 Pv~innFNyndPVnn~~I~y~~~p~~~~~~~~~KAF~I~~nIWIiPER~t~G~~ped~~~~~~i~~~~~~~YYDpnyLsT 80 (533)
T d1epwa3 1 PVTINNFNYNDPIDNNNIIMMEPPFARGTGRYYKAFKITDRIWIIPERYTFGYKPEDFNKSSGIFNRDVCEYYDPDYLNT 80 (533)
T ss_dssp CCCCCCCCTTSCCCSSSEEEEECGGGTTCSCCEEEEEEETTEEEECSCCCTTCCGGGGSCCSEESCTTSCEEBCTTTTCS
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 93336676689888972899946666667860344572077687612124689977748998855676533017431356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 D~EKD~FLk~iIKLf~RInsn~~G~~LL~~Is~aiPf~G~~~t~~~~f~~~~~s~sv~~~~~~~~~~~~~~~~~~NlvIf 160 (533)
T d1epwa3 81 NDKKNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGIFANLIIF 160 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHCCCCSSCTTSCTTEECCCSTTTEEEEECSCTTCCSCEEEEECSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
T ss_conf 21687999999999998637578999999997367767889997333302333320213303777533333433217998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 GPg~nI~en~~~~~~~~~~~~s~~GfGs~~~i~FsP~~~~~fn~~~~~~~~~~~~~~~F~~DPAl~L~heLIhsLh~LYG 240 (533)
T d1epwa3 161 GPGPVLNENETIDIGIQNHFASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFNRRGYFSDPALILMHELIHVLHGLYG 240 (533)
T ss_dssp CCCSBTTCCEEECCEETTEEGGGTTSCCCEEEECCSSEEEEECCTTSCSTTCSSSCCSEECCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCC
T ss_conf 78864245553121024576221476505799977633776134335666554353445328899999999999887507
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Iki~~~~~ip~~~~~~~~~~~~~~leElltfGG~D~~~I~~~~~~~i~~~~l~~yk~Ia~rLn~~~~~i~~~~~~i~~yK 320 (533)
T d1epwa3 241 IKVDDLPIVPNEKKFFMQSTDAIQAEELYTFGGQDPSIITPSTDKSIYDKVLQNFRGIVDRLNKVLVCISDPNININIYK 320 (533)
T ss_dssp CCCCCSCBCBCCSSTTBCCCCCBCHHHHHHHCTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCCEESSCTTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHH
T ss_conf 45687642320022555346642288998616978110483168889999998899999986553213688865468999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~f~~KY~f~~d~~G~~~VN~~kF~~lYk~L~~~fTE~~la~~fkvk~Rk~Y~~~~y~~~k~~nlldd~iYtI~eGFNi~ 400 (533)
T d1epwa3 321 NKFKDKYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETNIAENYKIKTRASYFSDSLPPVKIKNLLDNEIYTIEEGFNIS 400 (533)
T ss_dssp HHHHHHTTCEECTTCCEECCHHHHHHHHHHHHHTSCHHHHHHHHTCCCCSCSSSCCEEEEEESCTTCTTTCBTTTBTCCG
T ss_pred HHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCEECCCCCCCC
T ss_conf 99999857752788858840899999999986023777777565003254410234573000334776513413552156
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~nl~~~~~GQN~~~N~~~~~~i~~~~lv~~~i~~ck~I~~~~LCI~VnN~dLfFva~e~s~~~Di~~~~~I~~dT~~~~ 480 (533)
T d1epwa3 401 DKDMEKEYRGQNKAINKQAYEEISKEHLAVYKIQMCKSVKAPGICIDVDNEDLFFIADKNSFSDDLSKNERIEYNTQSNY 480 (533)
T ss_dssp GGTCCGGGGGGBTTTCGGGEECCCGGGEECCEEEEECCC---CCEEEEEGGGSBCCBCGGGSCCGGGSCEEECSSCCCCC
T ss_pred CCCCCHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 52000001666600280444115866357787777505679961798636544100364443444566504575422113
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1717 ----------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~n~slDqviLd~n~~~~p~lpn~~~e~l~~~~~yvp~y~~~~~~k~~~~~~ 533 (533)
T d1epwa3 481 IENDFPINELILDTDLISKIELPSENTESLTDFNVDVPVYEKQPAIKKIFTDE 533 (533)
T ss_dssp CCSCCCHHHHHHCSSSSCCSCCCCSEECCCCCCCCBCCCCCCEESEEEEECCC
T ss_pred CCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 55667601237605655688888654432324786664445651255521579
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=100.00 E-value=0 Score=40313.88 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~V~t~~G~i~G~~~~~~~~~v~~f~GIpyA~pP~G~~Rf~~p~~~~~w~~~~~at~~~~~C~Q~~~~~~~~~~~~~~ 80 (532)
T d1ea5a_ 1 SELLVNTKSGKVMGTRVPVLSSHISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNASTYPNNCQQYVDEQFPGFSGSEM 80 (532)
T ss_dssp CTTEEEETTEEEECEEEEETTEEEEEEEEEECBCCCCGGGTTSCCCBCCCCSSEEECBSCCCBCCCCCCCSSTTCHHHHT
T ss_pred CCEEEEECCEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96699979989984897308985799754677899998789999978999988266866899998767555766565434
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~sEDCL~LnI~~P~~~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~~GFl~~~~~~~ 160 (532)
T d1ea5a_ 81 WNPNREMSEDCLYLNIWVPSPRPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQE 160 (532)
T ss_dssp TSCCSCBCSCCCEEEEEECSSCCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCTTCSS
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 68899867648989999689988888679999858742445874556750122036840798752346653433121247
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~~~~~~~~~~~~~~~ 240 (532)
T d1ea5a_ 161 APGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPNCPWASVSVAEGRR 240 (532)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTTCTTSCBCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCCCCHHHHHHHEEECCCCCCCCCCCCCHHHHH
T ss_conf 78755513089999999999986267732357632025655133321576310233112010233567643223078899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~a~~l~~~~~~~~~~l~cLr~~~~~~L~~a~~~~~~~~~~~~~~f~PviDG~~lp~~p~~~~~~g~~~~vPiliG~ 320 (532)
T d1ea5a_ 241 RAVELGRNLNCNLNSDEELIHCLREKKPQELIDVEWNVLPFDSIFRFSFVPVIDGEFFPTSLESMLNSGNFKKTQILLGV 320 (532)
T ss_dssp HHHHHHHHTTCCCSSHHHHHHHHHHSCHHHHHHHGGGGCSSSCSSCCSSCCBCCSSSSSSCHHHHHHHTCSCCSCEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHCCCCCCCCEEECC
T ss_conf 98999987510468999999999729999999987502765546776637732504347049999855886668632013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 t~dEg~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~tD~~f~~P 400 (532)
T d1ea5a_ 321 NKDEGSFFLLYGAPGFSKDSESKISREDFMSGVKLSVPHANDLGLDAVTLQYTDWMDDNNGIKNRDGLDDIVGDHNVICP 400 (532)
T ss_dssp ETBTTHHHHHHHSTTCCTTSCCCCCHHHHHHHHHHHSTTCCHHHHHHHHHHTCCTTSTTCHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 46515665340664335430101029999999987466532467999999830455676325689999999877799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~a~~~a~~~~~vy~Y~F~~~~~~~~~~~~~Ga~H~~Dl~yvFg~~~~~~~~~t~~d~~ls~~m~~~w~nFaktGnPn 480 (532)
T d1ea5a_ 401 LMHFVNKYTKFGNGTYLYFFNHRASNLVWPEWMGVIHGYEIEFVFGLPLVKELNYTAEEEALSRRIMHYWATFAKTGNPN 480 (532)
T ss_dssp HHHHHHHHHTTSSCEEEEEECCCCTTCCSCGGGCSBTTTTHHHHTTGGGCGGGCCCHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999850589633776553566668787784641048887499665778979899999999999999982727799
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1717 ---------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------~ 1717 (1815)
+
T Consensus 481 ~~~~~~~~Wp~y~~~~~~~l~i~~~~~~~~~~~~~~~~~fW~~~~p~l~~~~ 532 (532)
T d1ea5a_ 481 EPHSQESKWPLFTTKEQKFIDLNTEPMKVHQRLRVQMCVFWNQFLPKLLNAT 532 (532)
T ss_dssp CTTCSSCCCCCBCTTTCEEEEESSSCCCEEESTTHHHHHHHHTHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8978899889967998587997999760254422999999999999897569
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=40313.28 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~pvv~t~~G~v~G~~~~~~~~~~~v~~f~gIpYA~pP~g~~Rf~~p~~~~~~~~~~~at~~~~~C~Q~~~~~~~~~~~ 80 (532)
T d2h7ca1 1 SSPPVVDTVHGKVLGKFVSLEGFAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVKNATSYPPMCTQDPKAGQLLSEL 80 (532)
T ss_dssp CCCCEEEETTEEEECEEECCTTCSSCEEEEEEEECSCCCCGGGTTSCCCCCCCCSSEEECBSCCCEESCCHHHHHHHHHH
T ss_pred CCCCEEEECCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 98898997966898599841788860699902665899998889989977999988566734899897778655543200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~sEDCL~LnI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~ 160 (532)
T d2h7ca1 81 FTNRKENIPLKLSEDCLYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFST 160 (532)
T ss_dssp HCCSSSCCCCCEESCCCEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCCCC
T ss_conf 13555678998787389899897888887877279999858865313566678523420475389998434677765433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~~~~~~~~~~~ 240 (532)
T d2h7ca1 161 GDEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALTSVLVKKGD 240 (532)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTCGGGBCCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHH
T ss_conf 33454332363889999999999999836895205640236542159999853103683111122035655753345203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~l~~~~g~~~~~~~~~l~cLR~~~~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~pv~Dg~~l~~~p~~~~~~g~ 320 (532)
T d2h7ca1 241 VKPLAEQIAITAGCKTTTSAVMVHCLRQKTEEELLETTLKMKFLSLDLQGDPRESQPLLGTVIDGMLLLKTPEELQAERN 320 (532)
T ss_dssp CHHHHHHHHHHTTCCCSCHHHHHHHHHHSCHHHHHHHHHHHTTTSCCCSSCGGGCCCCCCBCCCSSSCSSCHHHHTTCSS
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCC
T ss_conf 67899999998099989879999887049999999999863112344457766677323023588768788899752134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~vP~liG~t~dEg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~ 400 (532)
T d2h7ca1 321 FHTVPYMVGINKQEFGWLIPMLMSYPLSEGQLDQKTAMSLLWKSYPLVCIAKELIPEATEKYLGGTDDTVKKKDLFLDLI 400 (532)
T ss_dssp SCCCCEEEEEETBTTSSHHHHHTTCSCTTCCCCHHHHHHHHHHTHHHHCCCGGGHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 56775587653016677778765210121103267899887541421012788899999985067642056899999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 tD~~f~~p~~~~a~~~a~~~~~vy~Y~F~~~~~~~~~~~~~~~ga~H~~Dl~yvFg~~~~~~~~t~~d~~ls~~m~~~w~ 480 (532)
T d2h7ca1 401 ADVMFGVPSVIVARNHRDAGAPTYMYEFQYRPSFSSDMKPKTVIGDHGDELFSVFGAPFLKEGASEEEIRLSKMVMKFWA 480 (532)
T ss_dssp HHHHTHHHHHHHHHHHHHTTSCEEEEEEECCCTTSCTTSCTTCCSBTTTTHHHHTTGGGTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 65565079999999998446984078871357776555788765555126899709865678989899999999999999
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1717 ---------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------~ 1717 (1815)
.
T Consensus 481 nFaktG~Pn~~~~p~Wp~~~~~~~~l~i~~~~~~~~~~~~~~~~fW~~l~pk 532 (532)
T d2h7ca1 481 NFARNGNPNGEGLPHWPEYNQKEGYLQIGANTQAAQKLKDKEVAFWTNLFAK 532 (532)
T ss_dssp HHHHHSCCCCTTSCCCCCCSTTCEEEEEESSCEEEECTTHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 9818088888999989988999997996998830447488998999996088
|
| >d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glycosyltransferase family 36 C-terminal domain domain: Chitobiose phosphorylase ChbP species: Vibrio proteolyticus [TaxId: 671]
Probab=100.00 E-value=0 Score=40234.05 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~i~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD 80 (531)
T d1v7wa1 1 GNGERLREHYQDVANIDAAFAAIKAHWDERCAKFQVKSPNQGLDTMINAWTLYQAETCVVWSRFASFIEVGGRTGLGYRD 80 (531)
T ss_dssp THHHHHHHHTTSHHHHHHHHHHHHHHHHHHHTTEEEECSCHHHHHHHTTHHHHHHHHHHHHCSSCSSSCCSSCCSEEHHH
T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECH
T ss_conf 96789999865865499999999999999864849968988999999999998875300003666777778877288749
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~pe~Ar~~L~~~~~~q~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 160 (531)
T d1v7wa1 81 TAQDAISVPHANPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKEDVAPSKSPTVVPTPSDEDKIHGIKDTCSDDHLW 160 (531)
T ss_dssp HHHHTTSCTTTCHHHHHHHHHHHHHTBCTTSCBCSEECGGGGCC----------------------CCCGGGCBSSGGGG
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99999999964999999999999843124166454458776757744565555676788875555666653011552779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 i~~a~~~Y~~~TgD~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~g~~dw~d~~~~~~~~~~~~~~~~~~ 240 (531)
T d1v7wa1 161 LIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQTGICKGLRADWNDCLNLGGGESSMVSFLHFW 240 (531)
T ss_dssp HHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHHHHHHHHHHHSBCTTSCBEEETCSSSTTCCCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999986388999998666889999999999877645345213788984148875533340888862999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 al~~~~~la~~~g~~~~a~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 320 (531)
T d1v7wa1 241 ALQEFIDLAKFLGKDQDVNTYTEMAANVREACETHLWDDEGGWYIRGLTKNGDKIGTAQQQEGRVHLESNTLAVLSGLAS 320 (531)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEECTTSCEESCTTCSSCCEEHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCC
T ss_conf 99999999998699799999999998778999986688544651678758998525557633220112100456518999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~al~~~G~~d~A~~~~~~~~ 400 (531)
T d1v7wa1 321 QERGEQAMDAVDEHLFSPYGLHLNAPSFSTPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAETKLGRGDRAMKFYDALN 400 (531)
T ss_dssp HHHHHHHHHHHHHHHEETTEECSEESCCCSCCTTTCGGGGSCTTBTTBTSEESTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99999999988775158403320463101110100344456876441788586899999999998699999999987505
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~l~~g~~Gir~~~~~l~i~P~LP~~w~~~~~~~ 480 (531)
T d1v7wa1 401 PYNQNDIIEKRIAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYFAVTNYILGVQSGFTGLSVDPCIPSDWPGFEVTR 480 (531)
T ss_dssp GGGGTTCHHHHCSCTTSCEEEECCTTSTTTTCEEEESSCTHHHHHHHHHHHTTSCEECCSSCBEECCBCCTTCCEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCCCCCCCEEEEE
T ss_conf 22266688507764166531445777787888732687868999999999717647873996999556998878679999
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000235 1717 --------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~g~~~~i~v~~~~~~~~~~~~v~~nG~~v~~~i~~~~~g~~~~v~v~~~ 531 (531)
T d1v7wa1 481 QWRGATYHIQVENPDHVSKGVKSITLNGAPIQGRIPPQAQGSDNQVVVVLG 531 (531)
T ss_dssp EETTEEEEEEEECTTCCSBCEEEEEETTEEECSSBCCCCTTCEEEEEEEEC
T ss_pred EECCEEEEEEEEECCCCCCEEEEEEECCEECCCEEEECCCCCEEEEEEEEC
T ss_conf 999989999999789854304899989999442451236898799999969
|
| >d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Hepatitis C virus [TaxId: 11103]
Probab=100.00 E-value=0 Score=40169.23 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 s~sy~wtg~~~~~~~~~~~~~~~~p~~~~l~~~~n~vy~t~~~sa~~R~~Kvt~~R~q~~d~~y~~~i~e~~~~a~~~~~ 80 (530)
T d1gx5a_ 1 SMSYTWTGALITPCAAEESKLPINALSNSLLRHHNMVYATTSRSAGLRQKKVTFDRLQVLDDHYRDVLKEMKAKASTVKA 80 (530)
T ss_dssp CBSEEECSCCCCCSSCCCCBCCCCHHHHHHCSCGGGEEECCGGGHHHHHHHHCCBCCCCCCHHHHHHHHHHHHHHTTCBC
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEECCCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 95427258734567567678997752133422054699946742765012452541033648799999999987752566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~ll~~eea~~~~~~hsa~~~~g~g~k~v~~~~~~~~~~v~~~~~dl~~~~~~p~~~T~~~KnEvf~v~~~k~~~K~~RlI 160 (530)
T d1gx5a_ 81 KLLSVEEACKLTPPHSAKSKFGYGAKDVRNLSSKAVNHIHSVWKDLLEDTVTPIDTTIMAKNEVFCVQPEKGGRKPARLI 160 (530)
T ss_dssp CCCCHHHHHHTSCTTCCCCTTSCCHHHHHTTCHHHHHHHHHHHHHHHHCSSSCCCEEEEECCCEEECBTTTTBSCCCCEE
T ss_pred CCCCHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEECCCCCCCCCCCCEEE
T ss_conf 66659999724797024554285621133233567778999999987478845643564044344158555787886189
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~yP~l~~R~~ek~~ly~~~~~~p~~i~G~aY~fqy~p~qr~~~l~k~W~sf~~PVaIg~DtsrFDqhVSe~dLr~EhsIY 240 (530)
T d1gx5a_ 161 VFPDLGVRVCEKMALYDVVSTLPQVVMGSSYGFQYSPGQRVEFLVNTWKSKKNPMGFSYDTRCFDSTVTENDIRVEESIY 240 (530)
T ss_dssp EECCHHHHHHHHHHHHHHHTTHHHHHHGGGBGGGCCHHHHHHHHHHHHHHSSSEEEEEECBTTHHHHCCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 72687503567898764675376463266334656888999999999862478318971363023633788888899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~pe~rkli~sLterLy~~Gp~~~s~G~~ygyrgCRmSGdmnTSlGNtltc~l~a~aacra~gi~d~~LlnnGDDc 320 (530)
T d1gx5a_ 241 QCCDLAPEARQAIKSLTERLYIGGPLTNSKGQNCGYRRCRASGVLTTSCGNTLTCYLKASAACRAAKLQDCTMLVNGDDL 320 (530)
T ss_dssp HHSBCCHHHHHHHHHHHHHTTSCEEEECTTSCEEEEECSCCTTSTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCE
T ss_conf 88418877899999989864758668878995745478567687662046899999999999997599987077848978
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 VVI~Es~g~~ed~a~Lr~ftea~~r~~~~~~~~eePvY~lE~IeFCscq~~pv~dg~g~r~y~mvRdp~~~LaKda~s~~ 400 (530)
T d1gx5a_ 321 VVICESAGTQEDAASLRVFTEAMTRYSAPPGDPPQPEYDLELITSCSSNVSVAHDASGKRVYYLTRDPTTPLARAAWETA 400 (530)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHHHTTCCBSSCCCCBSSGGGCCBTTBEEEEEECTTSCEEEEEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHC
T ss_conf 99983588667899999999876514588887787632165555435533677727883699995688843545123204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~w~pv~SWlg~Ii~y~~~~~vr~vl~~h~~~~~~~~~~~~~~~~~~~~g~~ys~~~~~lp~ii~~lhg~~a~~~~~~s~~ 480 (530)
T d1gx5a_ 401 RHTPVNSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEKALDCQIYGACYSIEPLDLPQIIERLHGLSAFSLHSYSPG 480 (530)
T ss_dssp SCCSSCHHHHHHHHTTTSHHHHHTHHHHHHHHHHHTTCTTCCEEEEETTEEEEECGGGHHHHHHHHHCGGGGTCBSCCHH
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECHHHHHHHHHHHCCHHEEEEECCCHH
T ss_conf 88838899998987298399999999999999852688564315787364664277775899998548000687448818
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1717 -------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~~~~~l~~l~~p~l~~~r~ra~~vr~~l~~~gg~~~~~~~~l~~~~~ 530 (530)
T d1gx5a_ 481 EINRVASCLRKLGVPPLRVWRHRARSVRARLLSQGGRAATCGKYLFNWAV 530 (530)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 89999999987399815899988888999999637617888898750249
|
| >d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nickel-iron hydrogenase, large subunit domain: Nickel-iron hydrogenase, large subunit species: Desulfovibrio gigas [TaxId: 879]
Probab=100.00 E-value=0 Score=40158.60 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~ki~I~PitRiEGh~~l~l~vd~g~V~~a~~~~~~~RGfEk~l~Gr~~~d~~~it~RICGiC~~aH~~a~~~AvE~a~gi 80 (530)
T d1yq9h1 1 NKIVVDPITRIEGHLRIEVEVEGGKIKNAWSMSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASVRAVDNCVGV 80 (530)
T ss_dssp CEEEECSCCSSBSCEEEEEEEETTEEEEEEEEECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTC
T ss_pred CCEEECCCCCEEEEEEEEEEEECCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 95284687722433899999839989999981366626999977999889887741121146868999999999998199
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~vp~~a~~lR~L~~~~e~i~sH~l~~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (530)
T d1yq9h1 81 KIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDLSPRKTTTESLKAVQAKVKALVESGQ 160 (530)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCSGGGGGCCHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88987999999999999999999999988441002553344227688998753217433555899999999988876300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~al~~r~~~~~~~~~~~G~~~h~~~~v~GGv~~~~~~~~~~~~~~~~~~ 240 (530)
T d1yq9h1 161 LGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLRPERIAEFRKLY 240 (530)
T ss_dssp CGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECEECCCCCCCHHHHHHHHHHH
T ss_conf 24223544457886301562000235688999999999999999998488765671465715034667889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~~~G~~~~~~~~~~~~~~~~~~~e~v~~s 320 (530)
T d1yq9h1 241 KEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDFNPDLIEEHVKYS 320 (530)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTGGGGGSSCCCCEEECCBCCSSTTCGGGSSBCCEEECTTCTTCCBCCCGGGEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCCCCCCCCCHHHEEECCCHH
T ss_conf 99999999877778998888887677641544322036554455524451367633787642315456734614216668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~p~~~~t~~~~~~~~~~~~ys~~k~p~~~~~~~evGplAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (530)
T d1yq9h1 321 WYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEALFS 400 (530)
T ss_dssp TBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCGGGGSS
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 75477544864566777755456667840122312457632022789998640335704799999989871888655686
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~r~~aR~~E~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~GeG~G~vEApRG~L~H~~~~~~G~I~~~~ii~PT 480 (530)
T d1yq9h1 401 TLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNAPRGMLSHWIVQRGGKIENFQLVVPS 480 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCCCCSEEEEEEEEEETTEEEEEEEEEETTEEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCEEEEEEEECCC
T ss_conf 05439999999999999999999841312555677544678899973899999887702799999779989988898987
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1717 -------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------~ 1717 (1815)
+
T Consensus 481 ~~N~~p~~~~~~~~~~e~al~g~~~~d~~~~~~i~~~iRs~DPC~sCa~H 530 (530)
T d1yq9h1 481 TWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIACGVH 530 (530)
T ss_dssp HHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 11136444444603999983699878852176675786116775032061
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=40085.24 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a 80 (529)
T d1jdha_ 1 AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80 (529)
T ss_dssp CCCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 92567658760889997999999987299999999999999999845577899987133999999998479999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 160 (529)
T d1jdha_ 81 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 160 (529)
T ss_dssp HHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHH
T ss_conf 99999995891669999987989999998579798999999999998651320113678765881489998870576888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~ 240 (529)
T d1jdha_ 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240 (529)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 88899998876300478888876056368999998610489999999987511013323304565433346999862540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~ 320 (529)
T d1jdha_ 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15553015677750432110256640101445412454288999999988750122037888888750078999999840
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~ 400 (529)
T d1jdha_ 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 400 (529)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHH
T ss_pred HCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHH
T ss_conf 01113788999885002200000003566677645612478987153127899999998750000356666665326579
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a 480 (529)
T d1jdha_ 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 480 (529)
T ss_dssp HHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 99999866788999999860346776412131999999999999984498889999978889999998679998999999
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------9
Q 000235 1717 ------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls 529 (529)
T d1jdha_ 481 AGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 9999998659466999998888999999857999999999999999749
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=40083.00 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~ke~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~k 80 (529)
T d1yova1 1 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 80 (529)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCHHCCCHHHCCCHH
T ss_conf 91154134678986269999999579889988888999999999982698899985996896665820157945578799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~~G~v~~~ 160 (529)
T d1yova1 81 AEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRII 160 (529)
T ss_dssp HHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEE
T ss_conf 99999999986899957997377013444379885689999989999999999999999829999999536887999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~e~~p~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~vP~~vil~~~l~~~~~~~~g~~p~~~~ek~~~k~ 240 (529)
T d1yova1 161 IKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRD 240 (529)
T ss_dssp CSCEEESCCCCSSCCCCCCSSSCCHHHHHHHHTCCSSSSCHHHHTTSCHHHHHHHHHHHHHHHTCCCCCCTTTHHHHHHH
T ss_pred ECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 58953896689877776556788678998875138423786445767339999999999998428989874778999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~i~~~~~~~~~~~~~~eeNf~EA~~~~~~~~~~~~ip~~i~~ll~~~~~~~~~~~s~~Fw~l~~alk~F~~~~~~g~lPl 320 (529)
T d1yova1 241 LIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPV 320 (529)
T ss_dssp HHHTSSCBCTTSSBCCCHHHHHHHHHHHHHSSCCSCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99842011255677763039999999998647777987899985684323578788508999999999997437887888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~g~lPDm~s~t~~Yi~Lq~iY~~Ka~~D~~~~~~~v~~~l~~~~~~~~~i~~~~i~~F~kn~~~l~~~~~~~l~~e~~~~ 400 (529)
T d1yova1 321 RGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLD 400 (529)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTTTSCEEECCCCHHHHHCTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEECCCCHHHHHCCC
T ss_conf 88878744575989999999999889889999999999999718998767888999998655431120367527653555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~l~~~~~~~~~~~~l~~~~~a~~~f~~~~~r~P~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~i~e~~r~ 480 (529)
T d1yova1 401 TINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRY 480 (529)
T ss_dssp TSCHHHHHHHTTSTTSTHHHHHHHHHHHHHHHHSSSCTTSSTTTHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 21356776543066635789999999999999848999986604576899999999988654056642159999999987
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------9
Q 000235 1717 ------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~el~~vaA~~GGiaaQEviK~iT~qy~Pi~n~~i~dgi~~~~~~~~l 529 (529)
T d1yova1 481 GAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL 529 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHTCSBCCSSEEEEETTTTEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCEEEECCCCEEEEEEC
T ss_conf 2786368999999999999999995674515886899667875556769
|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Bacteriophage RB69 [TaxId: 12353]
Probab=100.00 E-value=0 Score=40001.69 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~v~P~~~~~~~~~Y~Ga~V~~P~~G~y~~V~~lDf~SLYPSiIi~~NispeT~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (528)
T d1ih7a2 1 QNKVIPQGRSHPVQPYPGAFVKEPIPNRYKYVMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYINAVAERPSDVYS 80 (528)
T ss_dssp TTEECCCCCCCCCCCCCCCCBCCCCCEECSSEEEEEESSHHHHHHHHHTCCTTCEEEECCCCCHHHHHTTCSCCSCSSSE
T ss_pred CCEECCCCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHCCCCCCCCCEE
T ss_conf 99849999988888769978689999887897566804323899999787874348842067236565301456776503
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~ng~~~~k~~~gi~p~~l~~~~~~R~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~lk~~~~ 160 (528)
T d1ih7a2 81 CSPNGMMYYKDRDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSA 160 (528)
T ss_dssp ECTTSEEECSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCBCSCCCCCCCCTTSCCCHHHHHHHTTCBH
T ss_pred ECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 34788333135455378999999888899999998876535665432024321245542001220013677888865335
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~d~~Q~a~Ki~~NS~YG~~g~~~~r~~~~~~A~siT~~Gr~~I~~~~~~i~~~~~~~~~~~~~~ 240 (528)
T d1ih7a2 161 KSLNEMLFRAQRTEVAGMTAQINRKLLINSLYGALGNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEA 240 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 66777765567778777788999999998766677505533211466455656537999999999987512015776663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~viYgDTDS~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~E~i~~~~~~~ 320 (528)
T d1ih7a2 241 FVLYGDTDSIYVSADKIIDKVGESKFRDTNHWVDFLDKFARERMEPAIDRGFREMCEYMNNKQHLMFMDREAIAGPPLGS 320 (528)
T ss_dssp CEEEEETTEEEEECHHHHHHHCGGGCSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECCCTTS
T ss_pred EEECCCCCCCEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHCC
T ss_conf 24258830000004751112100013456778899999999999999998999876410001323432142211312201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~i~~aKKRYa~~v~~~~g~~~~~~Kl~~kGle~vRrd~~~~~k~~~~~vl~~Il~~~~~~~~~~i~~~~~~~~~~~ 400 (528)
T d1ih7a2 321 KGIGGFWTGKKRYALNVWDMEGTRYAEPKLKIMGLETQKSSTPKAVQKALKECIRRMLQEGEESLQEYFKEFEKEFRQLN 400 (528)
T ss_dssp CCCCEEEEETTEEEEEEEEETTEEEEEEEEEEESSCSSCTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCCEECCCCCCCEEEEECCCCCCCCCHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 10000212566653378732554322001110131210355578889999999999972106777778999999986299
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~i~~~~~~~~~~k~~~~~~~~k~~P~HVkaA~~yN~~lk~~~~~~~i~~G~kI~~v~lk~~n~~~~~~ia~~~~~~~~ 480 (528)
T d1ih7a2 401 YISIASVSSANNIAKYDVGGFPGPKCPFHIRGILTYNRAIKGNIDAPQVVEGEKVYVLPLREGNPFGDKCIAWPSGTEIT 480 (528)
T ss_dssp HHHHCEEEECCSHHHHEETTEECTTCCHHHHHHHHHHHHC------CCCCTTCEEEEEEBCTTCTTSSSEEEEETTSCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCC
T ss_conf 88865678777775302123667899665699999999986358998777998368999168987887547535666750
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------9
Q 000235 1717 -----------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------~ 1717 (1815)
=
T Consensus 481 ~~~~~~~~~yiD~~~~~~k~~~~pl~~i~~~igw~~e~~~tl~~fF~f 528 (528)
T d1ih7a2 481 DLIKDDVLHWMDYTVLLEKTFIKPLEGFTSAAKLDYEKKASLFDMFDF 528 (528)
T ss_dssp HHHHHHHHHHBCHHHHHHHHTHHHHHHHHHHHTCCSSCCCCGGGGSCC
T ss_pred CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
T ss_conf 014024432254999999988999999998649883444479995588
|
| >d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aconitase iron-sulfur domain superfamily: Aconitase iron-sulfur domain family: Aconitase iron-sulfur domain domain: Aconitase A, N-terminal domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=39928.31 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~y~~~~~~~~~~r~~l~rP~TL~EKI~~~Hl~~~~~~~~~~g~~~v~~~vDrv~~hD~T~~~a~~ 80 (527)
T d1acoa2 1 RAKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAML 80 (527)
T ss_dssp CCCCBSSTTCTTCBCCHHHHHHHHHHHHHHHCSCCCHHHHHHHTTBSCTTTCCCCTTTSEEEECCSEEEEEHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCHHHHHH
T ss_conf 97565466787886488999999999997469981799999998735223474058970599963789998532599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~l~~~g~~~~~~p~~v~~DH~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pg~GI~H~v~~E~~~~PG~~i 160 (527)
T d1acoa2 81 QFISSGLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLL 160 (527)
T ss_dssp HHHHHTCSSCSSCEEEECCSSCCBSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTCEEECTTSBCHHHHHHHHTCCTTCEE
T ss_pred HHHHCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCEEE
T ss_conf 99976999778987778689867766654246677999999999999855640445010477258997235625088478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 vg~DSHT~t~GalGala~GvG~te~~~~~~t~~~~~~vPetv~v~l~G~l~~gvtakDviL~i~~~l~~~g~~g~~vEf~ 240 (527)
T d1acoa2 161 IGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYH 240 (527)
T ss_dssp EESSTTGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHCTTTTBTEEEEEE
T ss_pred ECCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 54899865565534130467589999999479624128718999984677898667899999999986348874157984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 G~~i~~Ls~~~R~Ti~NMa~E~GA~~gif~~D~~t~~yl~~~gr~~~~~~~~~~~~~l~~D~~A~Y~~~ieiDls~ieP~ 320 (527)
T d1acoa2 241 GPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPH 320 (527)
T ss_dssp SGGGGGSCHHHHHHHHHHGGGGTBSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCCCSEEEEEEGGGCCCE
T ss_pred CCCCCEECCCCCCCHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCHHHCCHHHHHHCCCCCCCCCCEEEEEEHHHCHHH
T ss_conf 21000202444443122035545323587156889998764575302200000455304555775105999886864000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Va~P~~Pd~~~pv~e~~~~~~~~~~~~~Id~afIGSCTN~r~~Dl~~AA~ilk~~~~~g~~~~v~~~v~PgS~~V~~~~~ 400 (527)
T d1acoa2 321 INGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIE 400 (527)
T ss_dssp EECSSSTTCEEEHHHHHHHHHHHTCCCBEEEEEECSTTSCSHHHHHHHHHHHHHHHHTTCCCSSEEEECCSBHHHHHHHH
T ss_pred EECCCCCCCEEEECHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHH
T ss_conf 00578886214521012345551367215675531123788458889999986676538764665378517599999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~Gl~~~l~~aG~~i~~pgCg~CiG~~~~~~~~~ge~~~~vsTsNRNF~GR~G~~~~a~~yLaSP~~vaA~Ai~G~It~d 480 (527)
T d1acoa2 401 RDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFN 480 (527)
T ss_dssp HTTHHHHHHHTTEEECCSSCGGGGTCBCCCSSCTTCCEEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBSSCC
T ss_pred HCCHHHHHHHCCCEECCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCEEECC
T ss_conf 78629999976937766862010067763343567676699707989886789998861574799999999852000268
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------9
Q 000235 1717 ----------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------~ 1717 (1815)
.
T Consensus 481 p~~d~l~~~~g~~v~L~~P~~~ei~~~~~~~~~~~~~~Pp~~~~~~~ 527 (527)
T d1acoa2 481 PETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQR 527 (527)
T ss_dssp TTTCEEECTTSCEEECCCCCCCSSCSSCCCCCSCCEECCCSSCCCCC
T ss_pred CCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77676538999866736997121310147987556779997777899
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=39849.35 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~v~t~~G~i~G~~~~~~~~~v~~f~GIpyA~pP~g~~Rf~~p~~~~~w~~~~~at~~~~~C~Q~~~~~~~~~~~~~~~~ 80 (526)
T d1p0ia_ 1 IIIATKNGKVRGMQLTVFGGTVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKYANSCCQNIDQSFPGFHGSEMWN 80 (526)
T ss_dssp CEEEETTEEEECEEEEETTEEEEEEEEEECSCCCCGGGTTSCCCCCCCCCSEEECBSCCCBCCCCCCCSSTTCHHHHTTS
T ss_pred CEEEECCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98996988998689860898179977567689989878898997898999876785789989888866676534432357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~sEDCL~lnI~~P~~~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~~Gfl~~~~~~~~~ 160 (526)
T d1p0ia_ 81 PNTDLSEDCLYLNVWIPAPKPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGNPEAP 160 (526)
T ss_dssp CCSCBCSCCCEEEEEEESSCCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTTCTTSC
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 89987775897998967887788844999977984224676445686322124660377324444654446788765565
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~~~~~~~~~~~~a~~~~ 240 (526)
T d1p0ia_ 161 GNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFNAPWAVTSLYEARNRT 240 (526)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTTSTTSCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHEEEHHHCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 32343112355463897788764072112220113556344402247862023211200234555875556689999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~l~~~~gc~~~~~~~~l~cLr~~~~~~ll~a~~~~~~~~~~~~~~f~PviDg~~lp~~p~~l~~~g~~~~vPlLiG~~~ 320 (526)
T d1p0ia_ 241 LNLAKLTGCSRENETEIIKCLRNKDPQEILLNEAFVVPYGTPLSVNFGPTVDGDFLTDMPDILLELGQFKKTQILVGVNK 320 (526)
T ss_dssp HHHHHHTTCCCSSHHHHHHHHTTSCHHHHHHHHGGGSSSCCTTCCSSCCCCCSSSCCSCHHHHHHTTCSCCSCEEEEEET
T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCC
T ss_conf 99999819998998999999862899999985443113478765211245785105789999985388778736741136
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 dEg~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~D~~f~~p~~ 400 (526)
T d1p0ia_ 321 DEGTAFLVYGAPGFSKDNNSIITRKEFQEGLKIFFPGVSEFGKESILFHYTDWVDDQRPENYREALGDVVGDYNFICPAL 400 (526)
T ss_dssp BTTHHHHTTTCTTCCTTSCCCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHCCCC--CCTTHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62677764046322334321101999999999766453166799999970155555787999999999987789998999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~a~~~a~~~~~v~~Y~f~~~~~~~~~~~~~Ga~H~~Dl~yvFg~~~~~~~~~t~~d~~ls~~m~~~w~nFaktGdPn~~ 480 (526)
T d1p0ia_ 401 EFTKKFSEWGNNAFFYYFEHRSSKLPWPEWMGVMHGYEIEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 480 (526)
T ss_dssp HHHHHHHTTTCCEEEEEECCCCTTCCSCGGGCSBTTTTHHHHTTGGGCTTC-CCHHHHHHHHHHHHHHHHHHHHSCCCCT
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999997099814886402576678877778442416889718865467899989999999999999997180889999
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------9
Q 000235 1717 ---------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~~~Wp~y~~~~~~~l~i~~~~~~~~~~~~~~~~~fW~~~~p~l 526 (526)
T d1p0ia_ 481 QNQSTSWPVFKSTEQKYLTLNTESTRIMTKLRAQQCRFWTSFFPKV 526 (526)
T ss_dssp TTTCCCCCCCCTTTCEEEEECSSCCCEEESTTHHHHHHHHTTTTCC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHCCC
T ss_conf 8889999996799878799899987402475899999999885049
|
| >d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: Nitrogenase iron-molybdenum protein domain: Nitrogenase iron-molybdenum protein, alpha chain species: Clostridium pasteurianum [TaxId: 1501]
Probab=100.00 E-value=0 Score=39776.42 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~pg~~~~rgCa~~Ga~~vv~~pI~Dav~ivHGP~GCa~ 80 (525)
T d1mioa_ 1 SENLKDEILEKYIPKTKKTRSGHIVIKTEETPNPEIVANTRTVPGIITARGCAYAGCKGVVMGPIKDMVHITHGPIGCSF 80 (525)
T ss_dssp CCHHHHHHHHSSCHHHHHHHGGGEEEEBTTBSSCCCCCSCCCCTTSCBCCCCHHHHHCCCCCTTCTTEEEEEEEEHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 92689999986885767667523113689986655355887079867666617451388875215756999777601017
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 y~~~~r~~~~~~~~~~~~~~~~~~~sT~l~E~dvVfGG~~kL~~aI~e~~~~~~Pk~I~V~sTC~seiIGdDi~~v~~~~ 160 (525)
T d1mioa_ 81 YTWGGRRFKSKPENGTGLNFNEYVFSTDMQESDIVFGGVNKLKDAIHEAYEMFHPAAIGVYATCPVGLIGDDILAVAATA 160 (525)
T ss_dssp TTSSCSCBCCCCTTSSCCCCTTCCEEEEECHHHHHHTTHHHHHHHHHHHHHHTCCSEEEECCCHHHHHHTCCHHHHHHHH
T ss_pred CCHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCHHHHHHHH
T ss_conf 77222041456656677544552000147753121486376999999999851998999977867999741899999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~pVi~v~t~Gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~VNiiG~~~~~~D~~eikrlL~~~Gi~v~~~~~ 240 (525)
T d1mioa_ 161 SKEIGIPVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLT 240 (525)
T ss_dssp HHHHSSCEEECCCCTTSSSSTHHHHHHHHHHHHHHTTBCCCCCCCTTEEEEEEECCBTSHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 88748966997467651776430889999999998346777667897299986877503099999999975798358638
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 g~~s~eei~~~~~A~lnlv~~~~~~~~~A~~Lee~~GiP~~~~~p~G~~~T~~~Lr~ia~~~g~~~~~~~~ee~I~~e~~ 320 (525)
T d1mioa_ 241 GDATYEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDGIVETLRDMAKCFDDPELTKRTEEVIAEEIA 320 (525)
T ss_dssp TTCCHHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 86657888743554287640647899999999997393267147666033799999999983995056789999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~l~~~~~~L~GKrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~h~dd~~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (525)
T d1mioa_ 321 AIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGFEFAHRDDYEGREVIPTIKIDADSKNIPEITVTPD 400 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEESSCCHHHHHCGGGTTTCCCCSSCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHCCCCC
T ss_conf 99999999997607986588368537899999999869969985453144312444320232111101234310013543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iidd~~~~el~~~i~~~~pDLiig~~~ek~~a~klgiP~~~~ 480 (525)
T d1mioa_ 401 EQKYRVVIPEDKVEELKKAGVPLSSYGGMMKEMHDGTILIDDMNHHDMEVVLEKLKPDMFFAGIKEKFVIQKGGVLSKQL 480 (525)
T ss_dssp SSSCCCSSCTHHHHHHHGGGCCBTCCCCGGGTSCTTEEEEESCBHHHHHHHHHHHCCSEEEECHHHHHHHHHTTCEEEET
T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCEEEC
T ss_conf 10013343166777664300001112233432377767851799899999997649999996773069899829987417
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000235 1717 --------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~dr~gpy~GY~G~~~fa~~i~~~l~~pvw~~~~~pw~~~~~~~ 525 (525)
T d1mioa_ 481 HSYDYNGPYAGFRGVVNFGHELVNGIYTPAWKMITPPWKKASSES 525 (525)
T ss_dssp TTTTSCCCCSSSHHHHHHHHHHHHHHTCGGGGGCSCSSSSSSSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCC
T ss_conf 834468886467889999999999873937776428733355689
|
| >d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PFL-like glycyl radical enzymes superfamily: PFL-like glycyl radical enzymes family: R1 subunit of ribonucleotide reductase, C-terminal domain domain: R1 subunit of ribonucleotide reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=39775.84 Aligned_cols=1 Identities=0% Similarity=-1.656 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~ssCfv~~v~Ds~~~I~~~~~~~~~~~k~ggGvG~~~s~lR~~Gs~i~g~~g~ssG~v~f~k~~d~~~~~i~qgg~RrgA 80 (525)
T d1rlra2 1 FSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGA 80 (525)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHTTTTTCCEEEECCSSCCCSCCSSSSCCCSCCSHHHHHHHHHHHTTTSSSSSSSCC
T ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 96043078999989999999999999864774984036668899824798982787665999999998787728943201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~l~~~HpDI~~Fi~~K~~~g~~~~~~~~~~~~v~i~d~fm~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
T d1rlra2 81 ATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTK 160 (525)
T ss_dssp EEEEEETTBTTHHHHTTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEEECTTTSTTHHHHHHHCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 79997599631999998456767425552202543257747899874176633645355654334311457888877554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~v~Arel~~~i~~~~~etG~P~i~f~d~~N~~~~~~~~~~~I~~sNlC~Ei~l~~~~~~~~~~~~~~~~~ 240 (525)
T d1rlra2 161 YEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIAL 240 (525)
T ss_dssp HHHCTTSCEEEEEHHHHHHHHHHHHHHHSCEEEEEHHHHHHSSSBCTTTSCCCCCCTTSCCCCCCBCCSSTTCTTCBCEE
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 43157623024989999999998613147642265312113555344564463577422113678743346777653455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~l~s~n~~~~~d~~~l~~~v~~~vr~LD~vid~~~~p~~~~~~~~~~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~ 320 (525)
T d1rlra2 241 CTLSAFNLGAINNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTH 320 (525)
T ss_dssp CEEEEEETTSCSSGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCCEEEEEECHHHHHHHTTCCSSSSTTHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 53234673311427887799999999999743011465047888988887640430008899998788760788776689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~i~e~i~~~a~~aS~eLAke~G~~p~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~w~~lr~~i~~~G~RNs~~~aiaP 400 (525)
T d1rlra2 321 KTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMP 400 (525)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCTTGGGBGGGGTCCHHHHSCGGGGGTCCCCCCSCHHHHHHHHHHHCCSCSCCBCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCEECCHHHHHHC
T ss_conf 99999999999999999985398874321244325542333212332223442225889999999973855521221103
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 T~s~s~i~~~s~gieP~~~~~~~r~~~~g~~~~~~~~~~~l~~~~~ta~ei~~~~~~v~~~A~~Q~~iDqsiS~tln~~~ 480 (525)
T d1rlra2 401 SETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDP 480 (525)
T ss_dssp CSHHHHHTTCCCTTCCCSCSEEEEEETTEEEEEECTTHHHHTTTCCCGGGSSCSHHHHHHHHHHHTTCSSCBCCCEEECG
T ss_pred CCCHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCCCCC
T ss_conf 35566650567755634212899993684057636884999999999998059469999999874406499819447784
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000235 1717 --------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~~~~~~~~~v~~~~~~Awk~GlKT~Yy~~Sr~~~~~~~~~~~ 525 (525)
T d1rlra2 481 SRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDDIDDLSNFQL 525 (525)
T ss_dssp GGSGGGCCCHHHHHHHHHHHHHTTCCEECCEEECCCHHHHTTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 225788888999999999999828882076937133101421469
|
| >d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PFL-like glycyl radical enzymes superfamily: PFL-like glycyl radical enzymes family: R1 subunit of ribonucleotide reductase, C-terminal domain domain: R1 subunit of ribonucleotide reductase, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=39775.26 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 L~sCfv~~v~Ds~~~I~~~~~~~a~~~k~ggGiG~~~s~lR~~G~~i~~~~g~ssG~v~f~~~~d~~~~~v~qgg~Rrga 80 (525)
T d1peqa2 1 LVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGA 80 (525)
T ss_dssp SCCCEEECCCSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCCBTTBSSCCCCSHHHHHHHHHHHHHC------CCE
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95365578898989999999999999863784874046768899814788981587201999999999997528965041
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~l~~~HpDI~~Fi~~K~~~~~~~~~~~~~~~~~~i~d~Fm~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~ 160 (525)
T d1peqa2 81 GAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDEL 160 (525)
T ss_dssp EEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEEEECHHHHHHHHSSCGGGSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 79997598630999997275688755200220420113578899876324420000001100037642320478999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~v~Ar~l~~~i~~~~~~tg~Pgi~f~D~iN~~~~~~~~i~~sNlc~EI~~~n~~~~~~~~~~~~~l~~~~~ 240 (525)
T d1peqa2 161 IADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDIS 240 (525)
T ss_dssp HHCTTSCEEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCSSSCCCCCCTTSCCCCCCCCCEECTTSCEEECCCCEE
T ss_pred HHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCE
T ss_conf 74388213442077999999998744043302110122034456633742444345302477110366544334554312
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 CnL~sinl~~~~d~~~~~~~~~~a~r~Ld~vid~~~~~p~~~~~~~~~~~R~iGlGv~Gla~~L~~lgi~Y~S~ea~~~~ 320 (525)
T d1peqa2 241 CNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFT 320 (525)
T ss_dssp CEEEEEEHHHHHTCSCHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHCCEEEEEECHHHHHHHTTCCTTSHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 43355464432123455514664123466765400347399999999985232267541778998759860001001125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~i~~~i~~~a~~aS~eLAkerG~~f~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~i~ 400 (525)
T d1peqa2 321 NLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVM 400 (525)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHHHHHHHSSCCSCSSHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999999999999999998519877545658555486365435542145442012211345787413888999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~G~rNs~l~aiaPt~s~s~~~~~t~gieP~~~~~~~r~~~~~g~~~~~~~~l~~~~k~vf~ta~ei~~~~~v~~~a~~Q 480 (525)
T d1peqa2 401 RYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNENLDMYQDAYDIGPEKIIDTYAEAT 480 (525)
T ss_dssp HHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCSTTSCEEEECTTCCTTSGGGCCCHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHEEEEECCCCEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 65310112200000155301205545406553231368826775699658878887981647831099999999999970
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------9
Q 000235 1717 --------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~iDqsiS~tin~p~~~~~~dv~~~~~~awk~GlKtlYY~r~~~~ 525 (525)
T d1peqa2 481 RHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYIRLRQL 525 (525)
T ss_dssp TTCSSCBCCCEEECTTCCHHHHHHHHHHHHHHTCCEECCEEECCC
T ss_pred CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 501675536502089899999999999999729770232620219
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=39694.44 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~lw~~ad~lR~g~~~~~~y~~~i~~llflk~~~d~~~e~~~~pe~~~w~~l~~~~~~~~~~~~~~~l~~~~~~~~ 80 (524)
T d2ar0a1 1 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDK 80 (524)
T ss_dssp CHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHTCHHHHSCTTSSHHHHHTCCHHHHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 95899999999998169989999999999999998533232855348875868999850373779999999999987647
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~if~~~~~~~~~~~~l~~li~~i~~~~~~~~~~~~~~D~lG~~YE~ll~~~~~~~~~~~GqfyTP~~Iv~~mv~ll 160 (524)
T d2ar0a1 81 KLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 160 (524)
T ss_dssp HHHHHHHTTCCCCCCCHHHHHHHHHHHHTCCC--------------------------------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCC
T ss_conf 88876414455403683889999973301221012233205679999999999987640345411114524557313202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~ 240 (524)
T d2ar0a1 161 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 240 (524)
T ss_dssp CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBS
T ss_pred CCCCCHHHCCHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 68631322365643052368999999983476332323678888875356530678999999998886335323233635
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~ 320 (524)
T d2ar0a1 241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD 320 (524)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHH
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 55534442025443334047746996655565420111001466127999999986456675899973487654024479
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 iR~~Ll~~~~i~aII~LP~~~F~~t~i~t~Il~l~K~k~~~~~~~~~~~~~v~f~d~~~~~~~~~k~~~l~~~~i~~i~~ 400 (524)
T d2ar0a1 321 IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFER 400 (524)
T ss_dssp HHHHHHHHEEEEEEEECCSSCSSSCSCCEEEEEEEEBCSSCTTCCSCCCCEEEEEECSTTCCCCSSSSCCCGGGTHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999982985289989997677899875899998898777655567667147878742187666888399999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~y~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~r~~~~~~e~i~~~~~~~ld~~~~~d~~~~~~~~~~~~~ 480 (524)
T d2ar0a1 401 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPD 480 (524)
T ss_dssp HHCSCTTSCSCCCSCCCCTTSTTSEECCSGGGTTCCTTGGGCSEEEEEHHHHHHTSSSCCCCCCEECCC-------CCHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHCHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCHHHCCCCHH
T ss_conf 97025223443333440103548786512012047860264312230088886413553214765155620111345779
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------9
Q 000235 1717 -------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~e~~~~~~~~~~el~~~~~el~~~~~~~~~~~~~~~~~~~~ 524 (524)
T d2ar0a1 481 VLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGV 524 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999998289721279999999985259
|
| >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=0 Score=39622.54 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~~R~~Gvllh~~SLp~~~GiGDfG~~a~~fvd~l~~~G~~~wQiLPL~~t~~~~~~~~ 80 (523)
T d1x1na1 1 VPAVGEDFPIDYADWLPKRDPNDRRRAGILLHPTSFPGPYGIGDLGPQAFKFLDWLHLAGCSLWQVLPLVPPGKRGNEDG 80 (523)
T ss_dssp CCCTTSCCCTTGGGCCCCCCGGGCCEEEEECCGGGSCCTTSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCBCCSSSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99888778976200076767777734489866755799998976138999999999986999899818998878999898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 SPYs~~S~falNPlyI~l~~L~e~g~l~~~el~~~~~~~~vdy~~v~~~K~~~L~~a~~~f~~~~~~~~~~~~~f~~~~~ 160 (523)
T d1x1na1 81 SPYSGQDANCGNTLLISLEELVDDGLLKMEELPEPLPTDRVNYSTISEIKDPLITKAAKRLLSSEGELKDQLENFRRDPN 160 (523)
T ss_dssp CTTSBSCSSSCCGGGSCHHHHHHHTSSCGGGSCCCCCCSBCCTTTHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCHH
T ss_pred CCCCHHCCHHCCHHHCCHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99251131222878719897754776787777426760226779999999999999999986223012468999999865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~wL~~ya~f~al~~~~~~~~W~~WP~~~~~~~~~~~~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~Gi~L~gD 240 (523)
T d1x1na1 161 ISSWLEDAAYFAAIDNSVNTISWYDWPEPLKNRHLAALEEVYQSEKDFIDIFIAQQFLFQRQWKKVRDYARSKGISIMGD 240 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSGGGSCHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 44899999999999996299887652266652024789999986346899999999999999999999987309865776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 lpi~V~~dsaDvW~~~~lF~l~~~~~~~~~~GaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~d~lRID 320 (523)
T d1x1na1 241 MPIYVGYHSADVWANKKQFLLNRKGFPLIVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWVRRIQRATDLFDEFRID 320 (523)
T ss_dssp EESSCCSSSHHHHTCGGGBCBCTTSCBSEEEEBCCSSSSSCCBCCCCBCBCHHHHHHTTSHHHHHHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCEEEEH
T ss_conf 11143577354321720101466679740147899987701121699888988985526389999999998757841205
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 H~~Gf~r~W~iP~~~~~a~~G~~~~~p~~~l~~~l~~~~~~~~vigEDLG~vp~~vr~~l~~~gi~g~~V~~f~~~~~~~ 400 (523)
T d1x1na1 321 HFRGFAGFWAVPSEEKIAILGRWKVGPGKPLFDAILQAVGKINIIAEDLGVITEDVVQLRKSIEAPGMAVLQFAFGSDAE 400 (523)
T ss_dssp TGGGGTEEEEEETTCSSSSSCEEEECCCHHHHHHHHHHHCCCEEEECCCSSCCHHHHHHHHHTTCCEEEEGGGSSSSCTT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHCCCCHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 27887887405269986456764665589999999997589856731312488899999997699841899996448888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~p~~y~~~~v~~~gTHD~~tl~gww~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~s~s~l~i~~lqDlL~l~~~ 480 (523)
T d1x1na1 401 NPHLPHNHEQNQVVYTGTHDNDTIRGWWDTLPQEEKSNVLKYLSNIEEEEISRGLIEGAVSSVARIAIIPMQDVLGLGSD 480 (523)
T ss_dssp CTTSGGGCCSSEEEESCCTTSCCHHHHHHTSCHHHHHHHHHHTTSCCGGGHHHHHHHHHHTSSCSEEEEEHHHHTTCCGG
T ss_pred CCCCCCCCCHHHEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHEEHHHHHCCCCC
T ss_conf 99885666622346436788802788986599999999999864467417999999999858142632539986265876
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------9
Q 000235 1717 ------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------~ 1717 (1815)
-
T Consensus 481 ~r~N~PGT~~~NW~wR~~~~~~~~~l~~~~~~l~~l~~~~gR~ 523 (523)
T d1x1na1 481 SRMNIPATQFGNWSWRIPSSTSFDNLDAEAKKLRDILATYGRL 523 (523)
T ss_dssp GCSCCTTCSSSCSCBCCCTTCCGGGCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7785999999886760476656366799999999999984889
|
| >d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: Nitrogenase iron-molybdenum protein domain: Nitrogenase iron-molybdenum protein, beta chain species: Azotobacter vinelandii [TaxId: 354]
Probab=100.00 E-value=0 Score=39546.94 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vnP~k~C~~~GA~~a~~g 80 (522)
T d1m1nb_ 1 SQQVDKIKASYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREALTVNPAKACQPLGAVLCALG 80 (522)
T ss_dssp CCCTTSCCBHHHHTTSHHHHHHHHHHHHHHTCCCCHHHHHHHHHHTTSHHHHHHHHTCSSCEESCSCCCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHC
T ss_conf 98767765456651488899999998874646798899989987510276765544216755590233758779999833
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 i~~~~pivHG~qGC~~y~r~~~~rhf~ep~~~~sT~m~E~~~VfGG~~kL~e~I~~~~~~~~P~~I~V~tTC~~eiIGDD 160 (522)
T d1m1nb_ 81 FEKTMPYVHGSQGCVAYFRSYFNRHFREPVSCVSDSMTEDAAVFGGQQNMKDGLQNCKATYKPDMIAVSTTCMAEVIGDD 160 (522)
T ss_dssp BTTEEEEEESCHHHHHHHHHHHHHHHSSCCCCEECCCCHHHHHHCSHHHHHHHHHHHHHHHCCSEEEEEECHHHHHHTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCC
T ss_conf 28968996476777632168762567898320332687011111828889999999999749989999778789884079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 i~av~~~~~~e~~~~~~~pVi~v~tpgF~Gs~~~G~d~a~~ai~~~~~~~~~~~~~~~~~~~iNii~g~~~~~gd~~eik 240 (522)
T d1m1nb_ 161 LNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEGIARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVIK 240 (522)
T ss_dssp HHHHHHHHHHTTSSCTTSCCCBCCCCTTSSCHHHHHHHHHHHHHHHHHGGGGGGCCTTTTCCEEEECCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf 99999999973477889717986478755640111999999999985014566666677881488578568714199999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 rlL~~~Gi~v~~l~d~s~~~d~p~~~~~~~~~ggttleei~~a~~A~~ni~l~~~~~~~~a~~le~~~g~p~~~~~~P~G 320 (522)
T d1m1nb_ 241 RMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIPMG 320 (522)
T ss_dssp HHHHHHTCCEEESSCCTTTTSCCCSSCCCSCCCCBCHHHHHHGGGSSEEEESSGGGCHHHHHHHHHTTCCCCCCCCCSBH
T ss_pred HHHHHHCCCEEECCCHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 99999199247606856504555677600058998699999877525551003889999999999964974341487554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 i~~Td~fL~~la~~~G~~v~~~i~~er~~~~d~~~d~~~~l~Gkr~aI~gd~~~~~~l~~fL~ElG~epv~v~~~~~~~~ 400 (522)
T d1m1nb_ 321 LDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKR 400 (522)
T ss_dssp HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTCCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHH
T ss_conf 78999999999999699768999987778888879899862898799989837799999999976996899860589988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~l~~~~~g~~~~V~~~~Dl~~l~~~i~~~~pDlliG~s~~k~l~~~~~~~a~~lgiP~ir~gfPi~dr~~~~~ 480 (522)
T d1m1nb_ 401 WKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHR 480 (522)
T ss_dssp HHHHHHHHHHTSGGGTTCEEEESCCHHHHHHHHHHSCCSEEEECTTHHHHHHHHHHHCGGGCCCEEECSSCCCSSSSGGG
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEECCCC
T ss_conf 99999999863667888879978999999999853799999978742233333455677549987983077588776777
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000235 1717 -----------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------~ 1717 (1815)
.
T Consensus 481 ~p~~GY~Gal~Ll~~I~N~il~~~~~~~~~~~~~d~~~d~~~ 522 (522)
T d1m1nb_ 481 STTLGYEGAMQILTTLVNSILERLDEETRGMQATDYNHDLVR 522 (522)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTTGGGCCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 753238779999999999999988876134666777610139
|
| >d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: alpha-mannosidase, C-terminal domain domain: Golgi alpha-mannosidase II species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=39542.64 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~VvvyNpL~~~r~evV~v~V~~~~v~V~D~~G~~V~sQi~pv~~~~~~~ 80 (522)
T d3bvua2 1 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDT 80 (522)
T ss_dssp SEEEECSTTTTTTTCCCCCEECCBTTTBSEEEEEEEECSSSCEEEEEEEEESCSCEEEEETTCCEECEEEEEEEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEECCCCEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 96435675889887872212674566678778999889988054699999889988999599699999981433546552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~yeL~F~A~vPpLG~~tY~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~len~~ 160 (522)
T d3bvua2 81 LTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGN 160 (522)
T ss_dssp TTTEEEEEEEEEEEEEEEEEEECTTEEEEEEEEECSSCCTTEEECEEEEECSSCCCCCCTTCSSCCEEECCCCEEEECTT
T ss_pred CCEEECCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 00000036888439999997738866699999974788433321010354047553334556552235786239996274
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~d~~tG~L~sI~~~~~~~~~~~~~~f~~y~~~~~~~~SgAYiF~P~~~~~~~~~~~~~~~v~~G~l~~ev~~~~~~ 240 (522)
T d3bvua2 161 GPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPS 240 (522)
T ss_dssp SCEEEECTTSCEEEEECSTTSCCEEEEEEEEEECBCSSSCCCCSSCCCBSSSCEECCCCSCCEEEEECSSCEEEEEEETT
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEEEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEE
T ss_conf 38989578897899998688707777667999963058875564587358874532368717999972089999998715
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~v~l~~~~~~ie~~~~v~~~~~kEiv~r~~t~i~s~~~fyTDsnG~~~~kR~~~~~~pv~~NyYPv~s~~~i~D~~~ 320 (522)
T d3bvua2 241 VVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANT 320 (522)
T ss_dssp EEEEEEESSSSCEEEEEECCTTCTTEEEEEEEEECCCCTTEEEEEETTTEEEEEECCTTSCGGGGCEEESSEEEEECSSE
T ss_pred EEEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCE
T ss_conf 89999960784099999964888866999996434455987997275420057313678755245522004899965871
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~lsll~dra~G~sSl~dG~lElml~Rrl~~dD~rGvge~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 400 (522)
T d3bvua2 321 RLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLEKVNNCVRPSKLHPAGYLTSAAHKAS 400 (522)
T ss_dssp EEEEEESSCEEEECCSTTEEEEEEEEEBCSCCSSSCCSCBCCCCCEEEEEEEEEEECTTSBCCCTTCSEECCCHHHHHHH
T ss_pred EEEEEECCCCCCCCCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 69999447777422569989999982013677643466755555665259999853422232144565554017888866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~l~~P~~~f~~~~~~~~~~~~~~~~l~~~lP~nvhl~tL~~~~~~~~~~~~~ll~L~~~~~~~~~~~~~~~~~~~L~~l 480 (522)
T d3bvua2 401 QSLLDPLDKFIFAENEWIGAQGQFGGDHPSAREDLDVSVMRRLTKSSAKTQRVGYVLHRTNLMQCGTPEEHTQKLDVCHL 480 (522)
T ss_dssp HHHHSCCEEEEECSSCCTTBCSEECTTSCCCCTTEEEEEEEECSCTTCSSEEEEEEEEECCCCBCSCCCCCCCCCCGGGS
T ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEHHHH
T ss_conf 53218600543057776454322256678899868998656767677777748999999244356765562068886883
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------9
Q 000235 1717 -----------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------~ 1717 (1815)
.
T Consensus 481 f~~i~~i~etsLt~~~~~~~~~~~~~v~l~PMEIrTf~i~~~ 522 (522)
T d3bvua2 481 LPNVARCERTTLTFLQNLEHLDGMVAPEVCPMETAAYVSSHS 522 (522)
T ss_dssp SSSEEEEEEECTTSCSEEEECGGGCCCCCCTTCEEEEEEEEC
T ss_pred CCCHHEEEECCCCCCCCCCCCCCCCCCEECCEEEEEEEEECC
T ss_conf 288410788412234555545757885488707689999739
|
| >d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein {Adeno-associated virus, aav-2 [TaxId: 272636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Parvoviridae-like VP domain: Dependovirus capsid protein species: Adeno-associated virus, aav-2 [TaxId: 272636]
Probab=100.00 E-value=0 Score=39317.55 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ga~Gvg~~sG~W~~gs~f~~~~V~T~~TRt~~Lp~~n~h~Yk~i~~~t~~~~~~~~~g~sTPW~y~D~N~~~~hfsP~dw 80 (519)
T d1lp3a_ 1 GADGVGNSSGNWHCDSTWMGDRVITTSTRTWALPTYNNHLYKQISSQSGASNDNHYFGYSTPWGYFDFNRFHCHFSPRDW 80 (519)
T ss_dssp CCCCSSSCSSCCCCCEEECSSCEEECCEEEEEECCGGGGCCEEEECCTTSCGGGCCEEEEEEEEEECCCBGGGTCCHHHH
T ss_pred CCCCCCCCCCCCCCCCEECCCEEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEECCHHCCCCCCEECCCCHHHH
T ss_conf 98886777766366788779989987427898448898201677147877788856578677030644341404687999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Q~l~n~~~~~~p~sl~~~i~ni~iK~Vt~~~~~~~~~n~lTa~~~vf~D~~~~~PYv~~~~~~~~~~~~P~~~~~~pqY~ 160 (519)
T d1lp3a_ 81 QRLINNNWGFRPKRLNFKLFNIQVKEVTQNDGTTTIANNLTSTVQVFTDSEYQLPYVLGSAHQGCLPPFPADVFMVPQYG 160 (519)
T ss_dssp HHHHHSEEEEEEEEEEEEEEEEEEEECCCCSSCCCCEECSSCCEEEEECTTCCSCCCTTSCCSCSCCSSTTCCEECCEEE
T ss_pred HHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99987313531231489997789889997788569824775078999768874673437776777888986345467436
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 Y~t~~~~~~~~~~s~fy~lE~~~~~~LrtG~~~~~~y~F~~~p~~~~~~~sq~l~~~~NPL~~q~l~~~~~~~~~sg~~~ 240 (519)
T d1lp3a_ 161 YLTLNNGSQAVGRSSFYCLEYFPSQMLRTGNNFTFSYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLSRTNTPSGTTT 240 (519)
T ss_dssp EECCCBTTBCCTTCCCCCTTSSCCEEECTTCCEEEEEECCCCCCEECEEESSCSSTTSCTTSCCSSEEEEEEEEEETTEE
T ss_pred EEECCCCCCCCCCCCEEEECCCCHHHHCCCCCCEEEEECCCCCHHHCCCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 99647886544453258853671885116875068887688683221355764443378664300000002356566466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~f~~~~~~~~~~~~~Nw~pGP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~pg~~~~~~~~~~~~~~~~ 320 (519)
T d1lp3a_ 241 QSRLQFSQAGASDIRDQSRNWLPGPCYRQQRVSKTSADNNNSEYSWTGATKYHLNGRDSLVNPGPAMASHKDDEEKFFPQ 320 (519)
T ss_dssp EEEEEEEECCTTTGGGCCCSCBCCCEECCCEEESSTTTSCSSCCTTTTSCEEEETTEEEECCSCSSCCSCCTTCTTEEES
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56310303676654665656455887665320136678765432234444552337532126888655303674442367
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~t~e~~~~~~n~v~~~~~g~~~~~~~~~~t~~~t~~~n~~g~lPgaVW~~rpiy~qgq 400 (519)
T d1lp3a_ 321 SGVLIFGKQGSEKTNVDIEKVMITDEEEIRTTNPVATEQYGSVSTNLQRGNRQAATADVNTQGVLPGMVWQDRDVYLQGP 400 (519)
T ss_dssp SSSCEEECTTCCSSSCCGGGEEECCCGGGTTTSCCTTSCSEEECCSCCBTTBCCCCEEESEECCCTTBCCCCCCCCTTSB
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76257546457865556553124847744788866644356534565777755301223540667764157898454787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 IW~KiP~tD~~f~~~p~~Gg~gm~~PPpqIFIK~~PvP~np~~~f~~~~~~S~I~qYsTgqvtv~i~we~kr~~skrWNP 480 (519)
T d1lp3a_ 401 IWAKIPHTDGHFHPSPLMGGFGLKHPPPQILIKNTPVPANPSTTFSAAKFASFITQYSTGQVSVEIEWELQKENSKRWNP 480 (519)
T ss_dssp CEEECCCCSCCSCCCCTTSSEEESSCSCCEEEEECCCBCCCCSSCCCSCCCCBCCCEEEEEEEEEEEEEEEECCCCCCSC
T ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCC
T ss_conf 44325678888566877776415799976898646668898766666776761688888899999999985335887686
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000235 1717 --------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------~ 1717 (1815)
-
T Consensus 481 e~q~t~~~~~~~~~~~~~~~~G~y~~~~~i~tr~~~~~~ 519 (519)
T d1lp3a_ 481 EIQYTSNYNKSVNVDFTVDTNGVYSEPRPIGTRYLTRNL 519 (519)
T ss_dssp CCCCCCCCSCCSSCSSEECTTCCEECCSCCCSCCEEECC
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCC
T ss_conf 010466667666653246688745477653221045679
|
| >d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Aspergillus nidulans [TaxId: 162425]
Probab=100.00 E-value=0 Score=39317.48 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~~e~~~~~~~i~~i~~w~~~pRw~gikR~Yta~dV~~lRgs~~~~~ts~~~A~kL~~lL~~~~~~~~~~~t~Ga~d~ 80 (519)
T d1dqua_ 1 SYIEEEDQRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIVAKRGNLKIEYPSNVQAKKLWGILERNFKNKEASFTYGCLDP 80 (519)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSGGGGGCCCSSCHHHHHHHCCSSCCCCTHHHHHHHHHHHHHHHHHHTCCEEEEBCCSH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCH
T ss_conf 90768989899999999987559661578899999999986598787675689999999999987504871340676888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~qA~q~~~gf~aiYlSGw~vAA~~~~~~~~~PD~~ly~~~svp~~v~~I~~a~~~~d~~q~~~~~~~~~~~~~~~~~~d~ 160 (519)
T d1dqua_ 81 TMVTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMNTVPNKVNHLWMAQLFHDRKQREERMTTPKDQRHKVANVDY 160 (519)
T ss_dssp HHHHHHHHHCSCEEECHHHHHHHCCTTCCCCSSCSCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHTTSCCCCC
T ss_pred HHHHHHHHHCCEEEECHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
T ss_conf 99999995387898333999744204788889734555146899999999988899999998622242445413454333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~PIIADaDtGfGg~~nv~~lvk~~ieAGaAgiHiEDQ~~~~KkCGHl~GKvlVp~~E~i~kl~AAr~A~d~~g~~~vII 240 (519)
T d1dqua_ 161 LRPIIADADTGHGGLTAVMKLTKLFVERGAAGIHIEDQAPGTKKCGHMAGKVLVPISEHINRLVAIRAQADIMGTDLLAI 240 (519)
T ss_dssp CCCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEECSBCTTCC------CEEECCHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCCCHHCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 35457644334464689999999999738746750111464132067688477249999999999999885069981799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ARTDA~~a~li~s~id~~d~~f~~G~~~~~~~~~~~~~~~~e~~g~~g~~~~~~e~~w~~~~~l~tf~ea~~~~i~~~~~ 320 (519)
T d1dqua_ 241 ARTDSEAATLITSTIDHRDHPFIIGSTNPDIQPLNDLMVMAEQAGKNGAELQAIEDEWLAKAGLKLFNDAVVDAINNSPL 320 (519)
T ss_dssp EECCGGGEEEESCTTCGGGGGGEEEECCTTSCCHHHHHHHHHHSCCCSHHHHHHHHHHHHHSCEECSHHHHHHHHHTSSC
T ss_pred EEECHHHHCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 95112120242012340106430366555530167888888750553477888888887742554104899998750356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~s~~~~~~~A~~~~~~~~~fdwd~~Rt~eG~y~~k~g~~~ai~r~~a~apyaDllW~ET~~Pdl 400 (519)
T d1dqua_ 321 PNKKAAIEKYLTQSKGKSNLEARAIAKEIAGTDIYFDWEAPRTREGYYRYQGGTQCAINRAVAYAPFADLIWMESKLPDY 400 (519)
T ss_dssp SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSSCCCCBTTSSCCTTCCEEECCSHHHHHHHHHHHTTSCSEEECCCSSCCH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCHHHHHCCCCCCCCH
T ss_conf 50467899987522463257788899985477764444677687860353587299999998504321243003688768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~a~~Fa~~I~~~~P~~~LaYN~SPSFNW~~~~~~d~~~~f~~~L~~~G~~~qfITLag~Hs~a~~~~~lA~~y~~~GM~ 480 (519)
T d1dqua_ 401 KQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPRDEQETYIKRLGALGYAWQFITLAGLHTTALISDTFAKAYAKQGMR 480 (519)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECCSSSCGGGTSCHHHHHSHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCCHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999858886466368987503433898999999999985272389866287887499899999998876869
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000235 1717 --------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------~ 1717 (1815)
.
T Consensus 481 AYv~~vQ~~E~~~g~~~~~HQ~~~G~~y~D~~~~~v~gg 519 (519)
T d1dqua_ 481 AYGELVQEPEMANGVDVVTHQKWSGANYVDNMLKMITGG 519 (519)
T ss_dssp HHHHHTHHHHHHHTCGGGSHHHHHTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCEECHHHHHCCCHHHHHHHHHCCC
T ss_conf 999997799997599745246442634899999982389
|
| >d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: Nitrogenase iron-molybdenum protein domain: Nitrogenase iron-molybdenum protein, beta chain species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=0 Score=39316.11 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~l~vnP~k~CqplGA~~a~~Gi 80 (519)
T d1qh8b_ 1 SQTIDKINSCYPLFEQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRREALTVDPAKACQPLGAVLCSLGF 80 (519)
T ss_dssp CCBTTBCCCHHHHTTSHHHHHHHHHHHTTTTCCCHHHHHHHHHHHTSHHHHHHHTTCSSCEESCSCCCHHHHHHHHHHTB
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97533410312010380599999988753279977899999987503244554100257632820006086899998542
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~p~vHG~qGC~~y~r~~~~rhf~ep~~~~sT~m~E~~~VfGG~~~L~~~i~~~~~~~~P~~I~V~tTC~~eiIGDDl 160 (519)
T d1qh8b_ 81 ANTLPYVHGSQGCVAYFRTYFNRHFKEPIACVSDSMTEDAAVFGGNNNMNLGLQNASALYKPEIIAVSTTCMAEVIGDDL 160 (519)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHHHHTSCCCCEECCCCHHHHHHCSHHHHHHHHHHHHHHHCCSEEEEEECHHHHHHTCCH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCH
T ss_conf 78779978854189999999872258985564467880120028488899999999985499789994677740177799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~vi~~~~~~~~~~~~~pvi~v~tpgF~gs~~~G~d~a~~ai~~~l~~~~~~~~~~~~~iNii~~~~~~~gd~~eikrll 240 (519)
T d1qh8b_ 161 QAFIANAKKDGFVDSSIAVPHAHTPSFIGSHVTGWDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMM 240 (519)
T ss_dssp HHHHHHHHHTTSSCTTSBCCBCCCCTTSSCHHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 99999998734777896489985798637499999999999999734244777787883899457678845499999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~Gi~~~~l~d~s~~~d~p~~g~~~~~~gGttleei~~~~~A~~nivl~~~~~~~~a~~Le~~~G~p~~~~~~P~Gi~~ 320 (519)
T d1qh8b_ 241 EQMAVPCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPATEVAIPLGLAA 320 (519)
T ss_dssp HHHTCCEEESSCTTTTTSCCCSSCCCSCCCCBCHHHHHHGGGEEEEEESSTTTCHHHHHHHHHTTCCCCCCCCCCBSHHH
T ss_pred HHCCCCEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 98499357547714303666667643068998899999866354556742146799999999984997483066577899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Td~fL~~la~~~g~~~~~~i~~er~r~~da~~d~~~~l~GkrvaI~gd~~~~~~la~fL~ElG~e~~~v~~~~~~~~~~~ 400 (519)
T d1qh8b_ 321 TDELLMTVSQLSGKPIADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGCEPTVILSHNANKRWQK 400 (519)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH
T ss_conf 99999999998589946899988999999999999973896799989708899999999974986659984689878999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~l~~~~~g~~~~v~~~~Dl~~l~~~i~~~~pDLliG~s~~k~ia~~~~~~~~~l~iP~ir~gfPi~dr~~~~~~p~ 480 (519)
T d1qh8b_ 401 AMNKMLDASPYGRDSEVFINCDLWHFRSLMFTRQPDFMIGNSYGKFIQRDTLAKGKAFEVPLIRLGFPLFDRHHLHRQTT 480 (519)
T ss_dssp HHHHHHHHSTTCTTCEEEESCCHHHHHHHHHHHCCSEEEECTTHHHHHHHHHHHCGGGCCCEEECSSCCCSSSSGGGCCC
T ss_pred HHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCC
T ss_conf 99999873767878779978999999999864699999978730344354543323149986983288788866777767
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------9
Q 000235 1717 --------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------~ 1717 (1815)
.
T Consensus 481 ~GY~Gal~ll~~I~N~ll~~~~~~~~~~~~~d~~~~~~~ 519 (519)
T d1qh8b_ 481 WGYEGAMNIVTTLVNAVLEKLDSDTSQLGKTDYSFDLVR 519 (519)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTCSTTTTGGGCCSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
T ss_conf 227889999999999999734301655577766405209
|
| >d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamate-cysteine ligase domain: Gamma-glutamylcysteine synthetase GshA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=39244.74 Aligned_cols=1 Identities=100% Similarity=0.004 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~l~~l~~~~~~l~~~~~GiEkE~lRv~~~G~ls~~~HP~~lGs~lthp~IttDfsEs~lE~iTp~~~~~~~~l 80 (518)
T d2d32a1 1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGHPEALGSALTHKWITTDFAEALLEFITPVDGDIEHML 80 (518)
T ss_dssp CCCCCHHHHHHHHHCGGGGTTCEEEEEEEEEEECTTSCBCCSCSCGGGCCTTTCSSEEECSBTTEEEEECCCBSCHHHHH
T ss_pred CCHHHHHHHHHHHHCHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHH
T ss_conf 96359999999885899883276463411002788978568999733287532879888556787661789999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~L~~lh~~~~~~l~~E~LWp~SMP~~l~~~~~I~iA~yg~sn~g~~k~~YR~gL~~rYG~~mq~isGiHyNfS~~~~~~ 160 (518)
T d2d32a1 81 TFMRDLHRYTARNMGDERMWPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW 160 (518)
T ss_dssp HHHHHHHHHHHTSSTTCEECCSSSCCCCSCGGGSCBCCCCSSHHHHHHHHHHHHHHHHHCSGGGGCCEEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCCCCEEEECCCCCHHHH
T ss_conf 99999999999508876315778898889756666422687541078999999999970621202220353356769999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~f~~~~Yl~lirNf~R~~Wli~YLfGASP~~~~sf~~~~~~~~~~~~~~~~~~y~~~atSLRmS~~G 240 (518)
T d2d32a1 161 QAKSGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSFLQGKPTSLPFEKTESGMYYLPYATSLRLSDLG 240 (518)
T ss_dssp HTCCT----HHHHHHHHHHHHHHHHHHHHHTTHHHHHHCCBCEEEGGGC----CCCCCEECTTSEEECTTCSBGGGSTTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99986326503788878999999998999989999980578022021035786633332168876336775324046788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Y~n~~q~~l~i~ynsl~~Yi~~l~~ai~~~~~~y~~ig~~~~g~~~qln~~~LqiEnE~Ys~IRpKr~~~~gerp~~aL~ 320 (518)
T d2d32a1 241 YTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALL 320 (518)
T ss_dssp CCSCBHHHHTCCSSCHHHHHHHHHHHHHCBCHHHHHHCSBSSSCBCCSCSBSCSSGGGSBCSEEEECCCCTTCCHHHHHH
T ss_pred CCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 88541332066521118899999999859836678857577866766520511003542255466667889855899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~GIeYiEvR~lDlNPf~~~GIs~~~i~FLdlfLlycLl~~Sp~~~~~E~~~i~~N~~~Vv~~GR~p~L~L~~~~~~~~i 400 (518)
T d2d32a1 321 RGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQF 400 (518)
T ss_dssp HHCCCEEEEEEEECCTTSTTSCCHHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHTTCTTCEECSTTSCCCE
T ss_pred HCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 56875798863037741012858889899999999998189854789999999999999998367988720137986622
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 sl~e~a~~Il~eL~~iA~~LD~~~~~~~Y~~al~~~~~kl~dP~lTpSarIL~em~e~g~~~fgl~lAk~~k~~~~~~~l 480 (518)
T d2d32a1 401 PLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSARILRSMIDTGIGGTGKAFAEAYRNLLREEPL 480 (518)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 39999999999999999998404587699999999999860978896899999999679789999999999999982899
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------9
Q 000235 1717 -------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~e~ea~~Sl~kQ~~IE~~D~~sFd~fL~~Y~ 518 (518)
T d2d32a1 481 EILREEDFVAEREASERRQQEMEAADTEPFAVWLEKHA 518 (518)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 87799999999999999999986136799999998539
|
| >d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Oligo-peptide binding protein (OPPA) species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=39161.89 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~p~sldP~~~~~~~~~~~~~~iy~~L~~~d~~~~~~P~LA~~w~s~Dg~t~tf~LR~gv 80 (517)
T d1jeta_ 1 ADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLLISDVEGHPSPGVAEKWENKDFKVWTFHLRENA 80 (517)
T ss_dssp CCCCTTCCBCSSCEEEEECSSCCSCSSTTSCCBHHHHHHHHHHCCCSEEECTTCCEEESSEEEEEEETTTEEEEEECTTC
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCEEEHHCEEEEECCCCEEEEEECCCC
T ss_conf 99998654656888999679999962711036847999999996464059949979641005889379988999959949
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 kfsDG~plTA~DV~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~tv~~~~~~p~~~~~~~l~ 160 (517)
T d1jeta_ 81 KWSDGTPVTAHDFVYSWQRLADPNTASPYASYLQYGHIANIDDIIAGKKPATDLGVKALDDHTFEVTLSEPVPYFYKLLV 160 (517)
T ss_dssp BCTTSCBCCHHHHHHHHHHHHCGGGCCTTTTHHHHTTBTTHHHHHTTSSCGGGSSEEEEETTEEEEEBSSCCTTHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHC
T ss_conf 97892998499999999998577888840445430322460232035666630479961473799994799832234411
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~vgtGPy~l~~~~~~~~i~l~rN~~y~~~~~~~~~~i~~~~~~d~~~~~~~l~~G~ 240 (517)
T d1jeta_ 161 HPSVSPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYWDNAKTVINQVTYLPISSEVTDVNRYRSGE 240 (517)
T ss_dssp SGGGSCCCHHHHHHHGGGTTSTTTCCCCSSEEEEEEETTTEEEEEECTTSTTGGGCCCCEEEEECCCCHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 55300122445553013235677866569957665403515899987865523212333322213311567888873687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~d~~vR~Ai~~aidr~~i~~~~~~g~~~~~~~~~p~ 320 (517)
T d1jeta_ 241 IDMTYNNMPIELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPP 320 (517)
T ss_dssp CSBCCSCCCTTTHHHHHHHSGGGEEEEEEEEEEEEEECTTSTTTTSHHHHHHHHHHSCHHHHHHTTTCSSCEECSSSSCT
T ss_pred CEEECCCCCHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 30321447445544320356741330575311222024567866679999999987888999999853355333321245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~a~~lL~eaG~~~g~~l~l~i~~~~~~~~~~~~~~~~~~~~~~iGi~v~~~~~~~~~~ 400 (517)
T d1jeta_ 321 YTDGAKLVEPEWFKWSQQKRNEEAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTF 400 (517)
T ss_dssp TSTTCCCCCCHHHHSCHHHHHHHHHHHHHHTTCCSSSCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 77776433221012222247999999999737777996599999557755777899999999985697578874554776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~d~~~~~w~~~~~~p~~~~~~~~~~~~~N~~~~~~~e~d~li~~a~~~~d~~~r~~~~~~~~~~~~e~~~~i 480 (517)
T d1jeta_ 401 LDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIV 480 (517)
T ss_dssp HHHHHHTCCSEEEEEEECSSSSTHHHHGGGSTTCTTCTTCCCCHHHHHHHHHTTTSCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHCCCCHHEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 54320565110232046898888999998667887676777999999999998615999999999999999999739999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000235 1717 ------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------~ 1717 (1815)
+
T Consensus 481 pl~~~~~~~~~~~~v~g~~~~~p~~~~~~~~~~~~~~ 517 (517)
T d1jeta_ 481 PVYYYVNARLVKPWVGGYTGKDPLDNIYVKNLYIIKH 517 (517)
T ss_dssp EEEEEEEEEEBCTTEESCCCCCTTCCCCGGGCEEBCC
T ss_pred EEEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEECC
T ss_conf 9998026999889858887768887648747999729
|
| >d1i7qa_ d.161.1.1 (A:) Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ADC synthase superfamily: ADC synthase family: ADC synthase domain: Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=39159.57 Aligned_cols=1 Identities=0% Similarity=-0.727 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~y~~dPvs~y~kL~~~~~~sFLLESa~~g~~~gRyS~Ig~~P~~~i~~~~~~v~i~~~~~nG~~~l~~ 80 (517)
T d1i7qa_ 1 TKPQLTLLKVQASYRGDPTTLFHQLCGARPATLLLESAEINDKQNLQSLLVIDSALRITALGHTVSVQALTANGPALLPL 80 (517)
T ss_dssp CCCBCEEEEEEECCCSCHHHHHHHHHTTCSSEEEEEEECTTTCCEEEEEEEEEEEEEEEEETTEEEEEECSSTGGGHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCEEEEEECCEEEEEECCCCCCHHHHH
T ss_conf 99701699843887899999999995799985999688889982870779989782999989899999806885034344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Lr~l~~~~~~~~~~~f~gG~~GylsYD~v~~~E~i~~ 160 (517)
T d1i7qa_ 81 LDEALPPEVRNQARPNGRELTFPAIDAVQDEDARLRSLSVFDALRTILTLVDSPADEREAVMLGGLFAYDLVAGFENLPA 160 (517)
T ss_dssp HHHHSCTTSEEEEETTEEEEECCCCCSSSCHHHHHTSCCTHHHHHHHHTSSBCCTTCTTSSEEEEEECGGGGGGTSSCCC
T ss_pred HHHHCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHCCCCC
T ss_conf 54430200010224677323026532101046550579989999999864158878776654325647466654306887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~d~~~Pd~~f~~~~~~ivfDh~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sn~~~~ 240 (517)
T d1i7qa_ 161 LRQDQRCPDFCFYLAETLLVLDHQRGSARLQASVFSEQASEAQRLQHRLEQLQAELQQPPQPIPHQKLENMQLSCNQSDE 240 (517)
T ss_dssp CBCCSCCCSEEEEEEEEEEEEETTTTEEEEEEEECCCCHHHHHHHHHHHHHHHHHHTSCCCCCCCCCCTTCCCEESSCHH
T ss_pred CCCCCCCCCCEEEECCEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCEECCCCC
T ss_conf 54446687516780024799963678675202234531256888999999999875122000034556766520056603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~y~~~V~~~~~~I~~Gd~~qvvLsr~~~~~~~~~~~~y~~lr~~nps~~~~~~~~~~~~~~gaSPE~ll~~~~~~~~v~t 320 (517)
T d1i7qa_ 241 EYGAVVSELQEAIRQGEIFQVVPSRRFSLPCPAPLGPYQTLKDNNPSPYMFFMQDDDFTLFGASPESALKYDAGNRQIEI 320 (517)
T ss_dssp HHHHHHHHHHHHHHHTSCSEECCEEEEEEECSCSHHHHHHHHHHSCCSEEEEEECSSCEEEEEESCEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCEE
T ss_conf 67778989888776515115503438998569971489998775214420001322110003566711244122464100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~piaGT~~rg~~~~~~~d~~~d~~~~~~L~~~~Ke~aEh~mvvdlirndl~~~~~~~sv~v~~~~~v~~~~~v~hl~s~v 400 (517)
T d1i7qa_ 321 YPIAGTRPRGRRADGSLDLDLDSRIELEMRTDHKELAEHLMLVDLARNDLARICQAGSRYVADLTKVDRYSFVMHLVSRV 400 (517)
T ss_dssp CCEEEEECCCBCTTSCBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHBCTTTCEEEEEEEEEECSSCEEEEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHCCCC
T ss_conf 13100010478764320346899999874004889999999999987531133554334552022233321330010222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~g~l~~~~~~~~~l~~~~P~~av~G~Pk~~A~~~I~~~E~~~Rg~Y~G~vG~~~~~g~~d~~v~IRt~~~~~~~~~~~aG 480 (517)
T d1i7qa_ 401 VGTLRADLDVLHAYQACMNMGTLSGAPKVRAMQLIAALRSTRRGSYGGRVGYFTAVRNLDTCIVIRSAYVEDGHRTVQAG 480 (517)
T ss_dssp EEEBCTTCCHHHHHHHHCSCGGGSEESHHHHHHHHHHHHCBCCTTTTSEEEEEETTSCEEEEECCSEEEEETTEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEECCEEEEEEE
T ss_conf 22345678989999867999814789889999999985599887614799999559988999985089999999999983
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000235 1717 ------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------~ 1717 (1815)
-
T Consensus 481 ~GIv~~S~p~~E~~Et~~K~~~~l~al~~~~~~~~~~ 517 (517)
T d1i7qa_ 481 AGVVQDSIPEREADETRNKARAVLRAIATAHHAKEVF 517 (517)
T ss_dssp CCBCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5996898828999999999999999999765234359
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=39154.94 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~~p~v~~~~g~~~G~~~~~~v~~F~GIPyA~pP~g~~Rf~~p~~~~~~~~~~~at~~~~~C~q~~~~~~~~~~sEDC 80 (517)
T d1ukca_ 1 SHNAQPVINLGYARYQGVRLEAGVDEFLGMRYASPPIGDLRFRAPQDPPANQTLQSATEYGPICIGLDEEESPGDISEDC 80 (517)
T ss_dssp CTTTSCEEECSSCEEECEECTTSEEEEEEEESSCCCCGGGTTSCCCCCCCCCSCEECBSCCCEECCTTCCCBTTTEESCC
T ss_pred CCCCCCEEEECCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999889959757997985689389846634799997668889987999998365524799896888788999978768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 L~LnI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~~~N~Gl~ 160 (517)
T d1ukca_ 81 LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDLNAGLL 160 (517)
T ss_dssp CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSSCTTHHHH
T ss_pred CEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCHHHH
T ss_conf 87899868898888985189997677566688754563256654225652698884246412047610001343220089
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~~~~~~~~~~~~~~~~~a~~l 240 (517)
T d1ukca_ 161 DQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQFERFVNDT 240 (517)
T ss_dssp HHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999987777643894423024246525668998732212466655110222553013420146999999998640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 g~~~~~~~l~cLr~~~~~~L~~a~~~~~~~~~~~~~~~~~~~~pv~Dg~~lp~~p~~~~~~g~~~~vplliG~t~~Eg~~ 320 (517)
T d1ukca_ 241 GCSSARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFIKVPVLVGDDTDEGSN 320 (517)
T ss_dssp TCTTCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSCCCCEEEEEETBGGGG
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHCCCCCCCCEEEEECCCCHHH
T ss_conf 15550566765404889999976421655445556543332120111434556867774058752233697521574354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~~~~~~~~~~~~~~~~~~~~D~~f~~P~~~~a~~~a~~~~~~vy~ 400 (517)
T d1ukca_ 321 FAYNASSSADVSRFFKNNYPNLTSQQLNEINQVYPRGKLLPRHAAYFGASSAAYGDATFTCPGNHVASSAARYLPNSVWN 400 (517)
T ss_dssp TSCCCSSHHHHHHHHHHHSTTCCHHHHHHHHHHSCCCSCCTTSCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGEEE
T ss_pred HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 30465432268898876433441667889998850576775067899999999876423389999999866414453433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 Y~f~~~~~~~~~~~~Ga~H~~DL~yvFg~~~~~~~~~~~~~~~~d~~ls~~m~~~w~nFaktGnPn~~~~~~~p~Wp~y~ 480 (517)
T d1ukca_ 401 YRVNIIDESNIAGGIGVPHTFELPAIFGAGSTGTLSSDSSYLTYNAAIIPVTMHYFISFVQTLNPNTYRYATAPEWNTWG 480 (517)
T ss_dssp EEECCCCHHHHHTTCCSBTTTTHHHHHCTTTTSCCCTTCGGGTTTTTHHHHHHHHHHHHHHHSCTTTTCCTTCCCCCCCT
T ss_pred CEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 11113676668876775262427987399865666776678979999999999999998080879988788999799888
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------9
Q 000235 1717 ------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~~~l~~~~~~~~~~~~~~~~~c~fW~~l~~~~~~ 517 (517)
T d1ukca_ 481 NGQRLRLQTNDTAMEAVPESSLQDCAFWKSLTVPMEV 517 (517)
T ss_dssp TTEEEEECTTCCEEEECCHHHHHHHHHHHTTHHHHTC
T ss_pred CCCCEEEEECCCCCEECCCCCHHHHHHHHCCCCCCCC
T ss_conf 9887799938985446477668897998715867679
|
| >d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD {Clostridium sticklandii [TaxId: 1511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Cobalamin (vitamin B12)-dependent enzymes family: D-lysine 5,6-aminomutase alpha subunit, KamD domain: D-lysine 5,6-aminomutase alpha subunit, KamD species: Clostridium sticklandii [TaxId: 1511]
Probab=100.00 E-value=0 Score=39099.09 Aligned_cols=1 Identities=0% Similarity=-0.926 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~kl~ld~~~v~~aR~lA~~i~~~v~~~i~~~tTvsvERtv~Rl~Gidg~d~~~vPl~N~vvd~l~~~~~L~~G~a~~~ 80 (516)
T d1xrsa_ 1 MESKLNLDFNLVEKARAKAKAIAIDTQEFIEKHTTVTVERAVCRLLGIDGVDTDEVPLPNIVVDHIKENNGLNLGAAMYI 80 (516)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHTTCCSBCTTSCBHHHHHHHHHHHTTCTTTCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf 98756899999999999999999999999854870268999999927778897799670899999996165113539999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~nA~~~~g~~pq~iae~~a~g~l~l~~~p~~~~~~~~~~~~~~~~~~i~~i~~~r~~Re~~~~~~g~~p~P~~YvIVAtG 160 (516)
T d1xrsa_ 81 ANAVLNTGKTPQEIAQAISAGELDLTKLPMKDLFEVKTKALSMAKETVEKIKNNRSIRESRFEEYGDKSGPLLYVIVATG 160 (516)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTCCCTTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCS
T ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 99998649998999999964887766689888999999999999999999999999999999970999987599998348
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~i~eDi~qaraAA~~GAD~IaVIRttgQSllDyvpeGaT~EG~GGt~aTqenfR~mRkALD~v~~EvGRyI~l~nY~SGl 240 (516)
T d1xrsa_ 161 NIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATTEGFGGTYATQENFRLMREALDKVGAEVGKYIRLCNYCSGL 240 (516)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCCSCCTTSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCST
T ss_pred CHHHHHHHHHHHHHCCCCEEEEHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 54878999999987489889853521355532476789877757730048999999999889999848723531312213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 cmPEIA~m~A~E~ld~~lnD~~YgILfRdINm~RtfvDq~~sr~i~a~AgiiintGedNyltTAdA~e~a~tv~~sq~IN 320 (516)
T d1xrsa_ 241 CMPEIAAMGAIERLDVMLNDALYGILFRDINMQRTMIDQNFSRIINGFAGVIINTGEDNYLTTADAFEEAHTVLASQFIN 320 (516)
T ss_dssp THHHHHHHHHHHTCSEEECCSSHHHHHHCBCHHHHHHHHHHHHHHHHHTTCEEECCTHHHHSSSCTTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHCCEECCCCHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43999999988633222202233200036535677988999999886437466037233440488999989999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 e~fa~~aGl~~e~igLghafe~~P~~~~~~~~eLa~A~~~RelFp~~plk~mppTK~mtgdif~~~~~~~lfnlis~lT~ 400 (516)
T d1xrsa_ 321 EQFALLAGLPEEQMGLGHAFEMDPELKNGFLYELSQAQMAREIFPKAPLKYMPPTKFMTGNIFKGHIQDALFNMVTIMTN 400 (516)
T ss_dssp HHHHHHTTCCGGGEECEEECCSCTTSTTHHHHHHHHHHHHHHHSTTSCCEEECCCTTCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99998819988873567789999986412798778999999867898733679865323516788999999999999962
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 q~Iql~gm~tEa~htP~~~dr~~aie~Aky~~~~~~~l~~~i~~k~~G~i~~rarevl~~A~~lLeeI~~~Glf~Aie~G 480 (516)
T d1xrsa_ 401 QRIHLLGMLTEALHTPFMSDRALSIENAQYIFNNMESISEEIQFKEDGLIQKRAGFVLEKANELLEEIEQLGLFDTLEKG 480 (516)
T ss_dssp CSEEECCCTTTTTSSCCHHHHHHHHHHHHHHHHHTTTHHHHCCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
T ss_conf 76000156410015702665899987899999976522100525898738999999999999999999963689997536
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000235 1717 -----------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------~ 1717 (1815)
.
T Consensus 481 ~F~~i~R~~dGGkG~~gV~~r~~dY~nP~~e~m~~~ 516 (516)
T d1xrsa_ 481 IFGGVKRPKDGGKGLNGVVSKDENYYNPFVELMLNK 516 (516)
T ss_dssp TTTTCCCCTTCSBTGGGEEECCTTCCCHHHHHHTCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHCC
T ss_conf 235503678788477650426876545489997239
|
| >d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Endo-alpha-sialidase domain: Endo-alpha-sialidase species: Bacteriophage K1F [TaxId: 344021]
Probab=100.00 E-value=0 Score=39098.25 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 sa~gdgvtddt~ai~~~l~~sp~~~~idg~g~tykvs~lpdisrf~na~fvyeri~gqpl~yase~f~qgel~kitdtp~ 80 (516)
T d1v0ea1 1 SAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPY 80 (516)
T ss_dssp CCCCEEEEECHHHHHHHHHHSCTTSCEECTTCEEEESSCCCGGGEESCEEEECSSTTCCEEEECBTSSSEEEEECCCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEECCCCEEEEEEECCCHHHHCCCEEEEEECCCCCCEEECCHHCCCEEEEECCCCC
T ss_conf 97666655557999998724898717717840688500752655302115644159984155221010644787516743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ynaw~qdktfvyd~viyapfm~~drhgv~~lhvawvrsgddgqtws~pewlt~lh~dy~tvnyhcmsmg~c~nrlfavie 160 (516)
T d1v0ea1 81 YNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIE 160 (516)
T ss_dssp EEECCTTCCEEETTEEEEEEEEESSSSSTTCEEEEEEESSTTSSCCCCEESSCCCTTTTTEEEECBCEEEETTEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEE
T ss_conf 23565664247510566132256644533036899971688873357133133356786422332110010020467887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 tr~l~~~~l~~~elw~rpm~~~~h~tggit~aa~q~~ati~i~dhgl~agd~vnfsnsavtgvsgnmtvatvidkntftv 240 (516)
T d1v0ea1 161 TRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTV 240 (516)
T ss_dssp EEETTTCCEEEEEEEEEECCCEEEEESCEEECTTSSEEEEECTTCCCCTTCEEEEESCCSTTCCEEEECCEEEETTEEEE
T ss_pred EEECCCCCCHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEECCEEEECCCCCCCCCCCEEEEEEECCCCEEE
T ss_conf 22100250034475458764100245877860686189999658762003312111652003447628999972673689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~n~q~s~~nnag~~w~~~t~f~~spw~~t~l~~i~~vte~hsfa~idn~~~avgyhn~dv~pr~lg~lyf~daf~sp~ 320 (516)
T d1v0ea1 241 LTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPS 320 (516)
T ss_dssp ECSCCCSSCEECTTCEEEEEECSTTSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTT
T ss_pred ECCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCC
T ss_conf 74686666434674043312410479751135665650344446789727716877406886751656798232247955
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~fvrr~i~~~y~~nasepcvk~y~gvlyl~trgt~~t~~gssl~~s~d~gq~w~~lrfp~nvhhsnlpfakvgd~l~ifg 400 (516)
T d1v0ea1 321 NYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFG 400 (516)
T ss_dssp CCEEEECCGGGCTTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEE
T ss_pred CEEEECCCHHHCCCCCCCHHHHCCCEEEEEECCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCHHHCCCEEEEEC
T ss_conf 11332163311578887503312878999854645899874003215446673530477653445787011187699951
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 sera~~ewe~gapd~ry~~syprtf~~rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged~f 480 (516)
T d1v0ea1 401 SERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHF 480 (516)
T ss_dssp ECSSTTCSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEHHHHCCCEEECCCCCEEEEEECCEEEEEECCCCCC
T ss_conf 40013643468986433467881479997135565553478860034111750211433015897578799995574347
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000235 1717 -----------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------~ 1717 (1815)
-
T Consensus 481 npws~gdnsak~~yk~dghpadly~yr~ki~~~~~v 516 (516)
T d1v0ea1 481 NPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRV 516 (516)
T ss_dssp CCCTTTTTTTCCTTSTTCCCCEEEEEEEECSCCCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
T ss_conf 864427876567633589743048999860654559
|
| >d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Gamma-glutamyltranspeptidase-like domain: Hypothetical protein Ta0994 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=0 Score=39086.40 Aligned_cols=1 Identities=0% Similarity=-0.428 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~r~~~~~~~g~Vas~~p~as~aG~~iL~~GGNAvDAAiA~~~~l~Vv~P~~~GlGGg~~~lv~~~~~~~~~id~~~~ 80 (516)
T d2i3oa1 1 MFRSRPNALSQRSVIASSSELASLAGRDILKRGGNIFDAALAVSAMLCVTQNNLCGLGGDLFALIRDENGQIMDLNGSGQ 80 (516)
T ss_dssp CCCSSCCEEESSEEEEESBHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSTTSCCTTSEEEEEEECTTCCEEEEEECCC
T ss_pred CCCCCCHHHCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEEEEECCCCCEEEEECCCC
T ss_conf 98888630228849987989999999999997889999999999999997053636465388999929998899953551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 aP~~~~~~~~~~~~~~~~~~~~~~~sv~VPG~~~gl~~~h~~~G~L~w~~ll~PAI~lA~~Gf~vs~~la~~l~~~~~~l 160 (516)
T d2i3oa1 81 ASRAVSIDYYESMGLTKIPERGPYAAITVPGIAGSWDEIFRKFATMDIADILEPAIRTASAGFPITQNYSDSIARSAPVI 160 (516)
T ss_dssp BCTTCCHHHHHTTTCSSCCSSSTTTCCBCCCHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCEECCHHHHHHHHHHHHHH
T ss_pred CHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 82238899997479975877677423410889999999863203442555526430110146410467888887666565
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~f~~~g~~~~~G~~~~~p~LA~TL~~ia~~G~~~FY~G~ia~~iv~~~~~~GG~lt~~DL~~Y~~~~~~Pl~ 240 (516)
T d2i3oa1 161 GQYRGWSSIFMPNGSVPVAGEILKQPDLAESFRLMSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVF 240 (516)
T ss_dssp TTCHHHHHHHSTTSSCCCTTCEECCHHHHHHHHHHHHHCTTHHHHSHHHHHHHHTTTTTCCCCCHHHHHHCCCEEECCEE
T ss_pred HHCCCHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCE
T ss_conf 53022123126789778999888876576999999974815443123443100111136861000332112345667722
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~y~g~~i~~~pPps~G~~~l~~L~ile~~~~~~~~~~~~~~h~~~ea~k~a~~~~~~~~Dp~~~~~~~~~~~~~~~~~~ 320 (516)
T d2i3oa1 241 TDLDEFRIYETSPNSQGITVIEWIRGMESHGYDSRTMWEAKIEDIFETMEEAYDKRRKITDPSYMNIAQHDSANGKKDGL 320 (516)
T ss_dssp EEETTEEEEECCTTBTTHHHHHHHHHHHHTTCCTTTGGGCCHHHHHHHHHHHHHHHTTCCCGGGTC------------CC
T ss_pred ECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 02333212046776520679999988875387644455303567789999988753302552433136777653000028
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~Tth~svvD~~GnaVs~T~Si~~~FGSg~~~~~tGi~lNn~~~~f~~~~~~~N~~~PgkRp~ssm~Ptiv~ 400 (516)
T d2i3oa1 321 PKRDHNDIGDTTYFSISDSEGRSVSIIQSNYMGFGSGIVPKGTGFVLQNRGSYFTLQRDHPNALMPGKRTFHTLAACMVE 400 (516)
T ss_dssp CBCCSCCCCEEEEEEEEETTSCEEEEEEEEESTTCSSCCCTTSCCCCCCGGGGSBCCTTSTTBCCTTCCCCBCCCCEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 66667889997799999788988863034677738701047777533675556556799777579986413255642002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~g~~~l~~Gs~GG~~i~~~~~qvl~~~l~~~~~~q~Ai~~PR~~~~~~~~~~~~~~~~E~~~~~~~~~~~L~~~g~~~~ 480 (516)
T d2i3oa1 401 KEHDLYASLGSMGGDIQPQVQMQILMEILKDNTDPQAILDKPRWTEPYTIYEAPGAVYVESEELYRNVSKQISGRKVVLR 480 (516)
T ss_dssp ETTEEEEEEEECCSTTHHHHHHHHHHHHTTCCSCHHHHHHSCCEECCCCTTSBCCCEEESSHHHHHHHHHHSCSCCEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEE
T ss_conf 46750067862897622799999999999669999999854503466665568980798247666999999971996876
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000235 1717 -----------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~G~~~~i~~~~~g~~~g~aDpRr~G~A~gy~ 516 (516)
T d2i3oa1 481 DVSQEFGTAQITTLIRGDVVVGAADPRGDGIAIPYS 516 (516)
T ss_dssp CSSGGGCCEEEEEEEGGGEEEEEECTTTBCEEEEEC
T ss_pred ECCCCCCCEEEEEEECCCEEEEEECCCCCCEECCCC
T ss_conf 788887326999994799899997899998832719
|
| >d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: 1-pyrroline-5-carboxylate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=39083.41 Aligned_cols=1 Identities=0% Similarity=-1.558 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~nep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~G~~v~s~~~~~~~nP~~tge~i~~~~~a~~~dv~~Av 80 (516)
T d1uzba_ 1 MTVEPFRNEPIETFQTEEARRAMREALRRVREEFGRHYPLYIGGEWVDTKERMVSLNPSAPSEVVGTTAKAGKAEAEAAL 80 (516)
T ss_dssp CCSCCCCCCCCCCCCSHHHHHHHHHHHHHHHHTTTEEECEEETTEEECCSSEEEEEETTEEEEEEEEEECCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCEEECCCCCEEEECCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 99899899988889994178999999999887539888837728787799985886899998699997399999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~aA~~A~~~W~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (516)
T d1uzba_ 81 EAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARAALRYRYPAVEVV 160 (516)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHGGGCSSCCCCC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999874499999999999999999987999999999983887433305678888887888998775221000221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~P~Gvv~~I~PwN~Pl~~~~~~~~~ALaaGN~Vv~Kps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~ 240 (516)
T d1uzba_ 161 PYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVG 240 (516)
T ss_dssp CCTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHHTCCTTSEEECCCSS
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCH
T ss_conf 23565406886226752234533333321223554043311345432320268999999999998096967088736986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~L~~hp~v~~I~FTGs~~~G~~i~~~aa~~~~~~~~~k~v~lElgG~~p~iV~~dAd~~~aa~~i~~~~~~~~GQ 320 (516)
T d1uzba_ 241 EEVGAYLVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQ 320 (516)
T ss_dssp SHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999998498957896266116788999987401420223223100036764225542356777777876421005887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~C~a~~ri~v~~~i~d~~~~~~~~~~~~l~~g~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~g~~~~~~g~~~~ 400 (516)
T d1uzba_ 321 KCSAASRLILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIA 400 (516)
T ss_dssp STTCEEEEEEEHHHHHHHHHHHHHHHTTCCBSCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTSEEEECCSBCSSSSCCBC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEC
T ss_conf 65346754334554310146799999863158986457666434999999999999999977999988886799982687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~d~eeai~~an~~~~gL~a~i~s~d~~~~~~~~~~l~~G~v~iN~~~~~~~~ 480 (516)
T d1uzba_ 401 PTVFTEVPPKARIAQEEIFGPVLSVIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALV 480 (516)
T ss_dssp CEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESSCSCCCCT
T ss_pred CEEEECCCCCCHHHCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCEEEEEECCCCCCCCC
T ss_conf 88995689886111377757469999949999999999779999879998588999999998688728998389888874
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------9
Q 000235 1717 -----------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~PfGG~k~SG~G~~~G~~~~l~~~~~~k~v~~r~ 516 (516)
T d1uzba_ 481 GVQPFGGFKLSGTNAKTGALDYLRLFLEMKAVAERF 516 (516)
T ss_dssp TTSCBCCSGGGBSCCCBTSHHHHHTTEEEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEECC
T ss_conf 899976705260880102179999838722679759
|
| >d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Cytochrome c oxidase subunit I-like superfamily: Cytochrome c oxidase subunit I-like family: Cytochrome c oxidase subunit I-like domain: Mitochondrial cytochrome c oxidase, subunit I species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=38938.25 Aligned_cols=1 Identities=0% Similarity=-0.926 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~f~~~w~~t~dHK~iG~lYl~~~~~~~~~G~~lslliR~eL~~p~~~~~~~~~Yn~~~T~Hg~iMiF~~~~P~~~ggFgn 80 (514)
T d1v54a_ 1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGFGN 80 (514)
T ss_dssp CHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSSCSHHHHHHHHHHHHHHHHHTTHHHHHTTHHHH
T ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 94777510277899999999999999999999999999987699766798238999899999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~lvPl~iGa~dmafPRlN~~sfWl~~~~~~ll~~s~~~~~g~~~GWT~YpPLs~~~~~~~~~vdl~i~~l~l~gissilg 160 (514)
T d1v54a_ 81 WLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG 160 (514)
T ss_dssp HHHHHHTTCSSCSSHHHHHHHHHTHHHHHHHHHHHHHSTTCCCSTTTTCTTTTSTTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99998569964343778999999999999999999714888988663465520468789857999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~iNfi~Ti~~~r~~gm~~~r~Plf~Ws~~vtsil~l~a~PvLa~a~~~ll~dr~~gt~ff~~~~Ggdp~L~qhLFWffgH 240 (514)
T d1v54a_ 161 AINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240 (514)
T ss_dssp HHHHHHHHHHSSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCC
T ss_conf 89999999876168874146606899999999999999899999999999998579830477778679999999985488
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 PeVYi~iLPa~g~~s~ii~~~s~rk~~fg~~~~v~a~~~i~~ls~~Vw~HHmft~g~~~~~~~~f~~~T~~IaiPt~vkv 320 (514)
T d1v54a_ 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKV 320 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCTTHHHHHHHHHHHHHHTTSCGGGGCTTSCCCHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 60221299889999999998738874557199999999999982011234622138868889999999999998789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 fnwi~T~~~g~~~~~~~~l~~l~fi~~F~~GG~tGi~la~~~~D~~lHdTy~VVaHFH~vl~~g~v~~~~a~~y~w~Pk~ 400 (514)
T d1v54a_ 321 FSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLF 400 (514)
T ss_dssp HHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHEEECCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 99999861886568878899999999999864212011531333133255057732346534489999999999999815
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~Gr~~~e~l~~~~f~~~fiG~~~~f~pmh~lGl~GmpRR~~~Y~~~~~~~n~~~siG~~i~~~~~~~f~~~~~~s~~~~~ 480 (514)
T d1v54a_ 401 SGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKR 480 (514)
T ss_dssp HSBCCCHHHHHHHHHHHHHHHHHHHTHHHHHHHTTCBTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 68606788899999999999999999999976589977366784779999999999999999999999999999998588
Q ss_pred ---------------------------------C
Q ss_conf ---------------------------------9
Q 000235 1717 ---------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~pw~~~tlEW~~~sPpp~~nF~~~p~v~~~ 514 (514)
T d1v54a_ 481 EVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514 (514)
T ss_dssp BBCCCTTGGGCGGGTTCSSCCSSCCSSCCEECCC
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 7789999999821066999998787999824789
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=0 Score=38930.16 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~ 80 (514)
T d1amua_ 1 GTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 80 (514)
T ss_dssp CCCHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 98799999999658888899999699999999984899739998994681999999999999999974968849999993
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T d1amua_ 81 EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLH 160 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCSCCC
T ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89899999999999869699986888999999987743487499983024555543102222222222122224566677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (514)
T d1amua_ 161 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK 240 (514)
T ss_dssp CCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89985661699973688877532222222222222222222222234544210002322443210010221110012344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~ 320 (514)
T d1amua_ 241 DTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWV 320 (514)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCEEEEEEECCCCCCEEEEECC
T ss_conf 33330455556666531221111011011222124554538998214589788543135516997412566733554113
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~ 400 (514)
T d1amua_ 321 ATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQAR 400 (514)
T ss_dssp CCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCEEE
T ss_conf 56555576666664023335765114633569997259997258544642035445500267513568883689778789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~~~~l~~~~~~~l~ 480 (514)
T d1amua_ 401 WLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELP 480 (514)
T ss_dssp ECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSC
T ss_pred ECCCCCEEEEECCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 98998499994266879989999999999999971998268999988878898799999982899999999999984387
Q ss_pred ---------------------------------C
Q ss_conf ---------------------------------9
Q 000235 1717 ---------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------~ 1717 (1815)
-
T Consensus 481 ~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (514)
T d1amua_ 481 TYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTF 514 (514)
T ss_dssp GGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 5658609999698787988574078607988989
|
| >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage factor two protein 2, CFT2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=38925.73 Aligned_cols=1 Identities=0% Similarity=-0.428 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~g~g~~sc~ll~~~~~~iLlDcG~~~~~~~~~~~~~~~~~~~~~IdaillTH~H~DHiGalP~L~~~~~~~ 80 (514)
T d2i7xa1 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 (514)
T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred CEEEEEEECCCCCEEEEEEEEECCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHCCHHHHHHHCCCC
T ss_conf 92899983599953228999989969999899986765655656655307464879998999867878517999851524
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~pIy~T~~T~~l~~~~l~d~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHil 160 (514)
T d2i7xa1 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (514)
T ss_dssp HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred CCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEECCCCCCC
T ss_conf 68886799688999999999999999744205556678999999999974403789975982587653799971277777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 Gsa~~~I~~~~~~IvytGD~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~~t~~~~~~~~~~~~~~~l~~~i~~~~~~ 240 (514)
T d2i7xa1 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS 240 (514)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHHHHHHHHHHHHHHTST
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 76699999799699997024778876477752234445544356778799986889987897377888889999999967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 gG~VlIP~fa~gR~QEil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~pf~~~ 320 (514)
T d2i7xa1 241 DGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIG 320 (514)
T ss_dssp TCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCCT
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHCC
T ss_conf 99899997675189999999999999877635677862999776899999999986765199888887650577822036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~i~~~~~l~~~~~p~VIiat~~~G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T d2i7xa1 321 SRIKIIAPNELSKYPGSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKS 400 (514)
T ss_dssp TTEEECCGGGGGGCCSCEEEEEESCHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC--------CCCC
T ss_pred CCEECCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 70363699999744698389984998569999999836998779995588766663777776543220135545565642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~i~~SgHad~~el~~~~~~~~P~~vvl 480 (514)
T d2i7xa1 401 FLCDNYISIDTIKEEPLSKEETNFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVL 480 (514)
T ss_dssp EECCEEEEEEEEEEEESCSCCCCCSCCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEE
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEEEEEEECCCHHHHHHHHHHHCCCEEEE
T ss_conf 02476324203433103444467643121011244301211451688987887887661389899999999609998999
Q ss_pred ---------------------------------C
Q ss_conf ---------------------------------9
Q 000235 1717 ---------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------~ 1717 (1815)
+
T Consensus 481 vHGe~~~~~~~a~~l~~~g~~v~~p~~g~~ie~~ 514 (514)
T d2i7xa1 481 SAPKQIQNEEITAKLIKKNIEVVNMPLNKIVEFS 514 (514)
T ss_dssp CSCGGGSCHHHHHHHHHTTCEEEECCSSCCEEEC
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEC
T ss_conf 3899899999999998779869946999978629
|
| >d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase alpha subunit species: Methylococcus capsulatus [TaxId: 414]
Probab=100.00 E-value=0 Score=38775.88 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~a~~~v~p~e~~~~~~~~~WDY~~~d~r~~k~Ye~~k~~~dP~~~~~d~Y~~~q~eKd~~v~g~ld~a~~r~~~~~~ 80 (512)
T d1mtyd_ 1 AANRAPTSVNAQEVHRWLQSFNWDFKNNRTKYATKYKMANETKEQFKLIAKEYARMEAVKDERQFGSLQVALTRLNAGVR 80 (512)
T ss_dssp CCSSCCCCCCHHHHHTTGGGGCCCCTTCSCSSCCSCCCCTTCCCSSCCCHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99867777891899999844788877787666642103555579661432555441666677788889999985360002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~d~~wl~~lk~~ls~~~hgE~gA~l~~A~l~r~apt~~ak~~aa~Qt~DE~RH~q~~a~~~~~l~~~~~d~~~~~~~r~~ 160 (512)
T d1mtyd_ 81 VHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRT 160 (512)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTTTHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 79789999999854547799999999999987577588999999987689999999999999998647985202244554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~Pi~q~~r~lfed~l~~~Dw~e~~ial~~v~E~~ftnL~fv~f~~~Aa~nGD~~~~tl~~SiqsDEaRH~~~g~~tL 240 (512)
T d1mtyd_ 161 RTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTV 240 (512)
T ss_dssp GGGSSHHHHHHHHHTHHHHSSCHHHHHHHHTTTHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02273157799999988733878999876540045411078999999999874691099999999846756534009999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~l~~~~n~~~~q~~id~~FWr~~r~~~~l~G~~mDY~tp~r~~s~~e~w~~~i~ed~~g~~~~~L~~yGl~~P~~~~~ 320 (512)
T d1mtyd_ 241 VSIANDPASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKD 320 (512)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSSCHHHHHHHHHTTTTTTHHHHTTGGGTCCCCTTHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99995622279999999999998889999998888873687643149999999999999999999999948989721999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~hH~~~~~~~~~~p~~~w~~~~~~~~e~eWle~KYPgw~~~yg~~w~~~~~~~~~~~~~g~~pl~~~~~~~~p 400 (512)
T d1mtyd_ 321 AKQDAYWAHHDLYLLAYALWPTGFFRLALPDQEEMEWFEANYPGWYDHYGKIYEEWRARGCEDPSSGFIPLMWFIENNHP 400 (512)
T ss_dssp HHHHHTTHHHHHHHHHHHTGGGSSSBCCCCCHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTTCTTSCCCTHHHHHHTTCC
T ss_pred HHHCCCHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCC
T ss_conf 87134146289999999970001067899897999999855988788872799999997224877676622201345687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~c~~cq~p~~~~~~~~~~~~r~~~~~G~~~~fcs~~c~~if~~ePery~~~~~~e~~~g~~lad~i~~~g~~r~dgkt 480 (512)
T d1mtyd_ 401 IYIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWLAEPERYECQNIFEQYEGRELSEVIAELHGLRSDGKT 480 (512)
T ss_dssp CEECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHHHCGGGCCCCCHHHHSTTCBHHHHHHHTTCBCTTSSB
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 34331257772125789987632454588166414806652115593305675589874897599999983965789884
Q ss_pred -------------------------------C
Q ss_conf -------------------------------9
Q 000235 1717 -------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------~ 1717 (1815)
-
T Consensus 481 l~~qph~~~~~~wt~d~~~~~~~~~~~p~~~~ 512 (512)
T d1mtyd_ 481 LIAQPHVRGDKLWTLDDIKRLNCVFKNPVKAF 512 (512)
T ss_dssp BSCBSSCCSSSCCBHHHHHTTTCBCCCGGGGC
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCEECCCCCCC
T ss_conf 37898878111654999987377317820119
|
| >d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Trehalase-like domain: Periplasmic trehalase TreA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=38697.11 Aligned_cols=1 Identities=100% Similarity=2.629 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~~~~~~~g~ll~~vq~~~~~~dsk~fvd~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~f~~~~~~~~~~~~~~~~~~ 80 (511)
T d2jg0a1 1 PQPPDILLGPLFNDVQNAKLFPDQKTFADAVPNSDPLMILADYRMQQNQSGFDLRHFVNVNFTLPKEGEKYVPPEGQSLR 80 (511)
T ss_dssp CCCHHHHTHHHHHHHHHTTCSSSHHHHHTCEESSCHHHHHHHHHHHTTSTTCCHHHHHHHHEECCC----CCCCTTCCHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 95858886999999997278799871528888999999999998633897999999999708997634457880579999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~w~~l~r~~~~~~~~~sli~~p~p~iVPGgrF~e~yyWDSyfi~lGLl~~~~~~~a~~ml~nf~~~i~~~G~IPn 160 (511)
T d2jg0a1 81 EHIDGLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPN 160 (511)
T ss_dssp HHHHHHTTTTEECCSSCCTTCSBCCCSSCEECCBTTBCSCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999846688887778853428887357898838623067999999988679699999999999999984891779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 g~r~yy~~rSQPPlla~mv~~~~~~t~D~~L~~~lp~L~~e~~~W~~~~~~~~~~~~~~~~~~~~~g~~l~ry~~~~~~p 240 (511)
T d2jg0a1 161 GNRSYYLSRSQPPFFALMVELLAQHEGDAALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNRYWDDRDTP 240 (511)
T ss_dssp BSBGGGTTCCCSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCCTTEEETTEEECTTSCEEECCCCSCCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99888889985489999999999874939999999999999999970577666777412452688776644544355898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 rpEsyr~D~~~a~~~~~~~~~~~y~~l~s~~ESGwD~S~Rw~~~~~~l~~~~t~~i~pVDLNsll~~~~~~La~la~~lg 320 (511)
T d2jg0a1 241 RPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAG 320 (511)
T ss_dssp CGGGHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCCSCGGGBSSTTCGGGBCGGGEECHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 73266653666641562669999999999875268854544577455301455400364399999999999999999823
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~a~~~~~~a~~~~~ai~~~lWd~e~g~~~Dyd~~~~~~~~~~~~~~~~PL~~g~~~~~~~~~~~~~l~~~~~~~gGi 400 (511)
T d2jg0a1 321 DNAMANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHLLQPGGL 400 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTTEECCCCBGGGGHHHHTTCSCHHHHHHHHHHHHHHTEETTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 65769999999999999999986347567367773577977752022023676626899999999999977755048883
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 pt~~~~~~~yWrgPnvW~p~n~lii~gL~~yG~~e~A~~la~~~l~~~~~~~~~tg~~~EkYd~~~~g~~G~ggey~~q~ 480 (511)
T d2jg0a1 401 NTTSVKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGEYPLQD 480 (511)
T ss_dssp CSBSCCCSSSSSTTEECHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHSSCBSCEETTSSSCBCCCSSSCCCB
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 89888987777899868859999999999809999999999999999999862079658753798778889998877899
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
+
T Consensus 481 gFGWTngv~L~ll~~~~~~~~~~~~~~~~~~ 511 (511)
T d2jg0a1 481 GFGWTNGVTLKMLDLICPKEQPCDNVPATRP 511 (511)
T ss_dssp SCHHHHHHHHHHHHHHSCSSSCCSSCCSSCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9960999999999852864468898889998
|
| >d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Cellulose 1,4-beta-cellobiosidase CbhA species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=0 Score=38693.28 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 dvY~~~l~~sl~ff~~QRsG~~v~~~~~~~~~w~~~a~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlsGGW~DAG 80 (511)
T d1ut9a1 1 DIYTQMKYDALAFFYHKRSGIPIEMPYAGGEQWTRPAGHIGIEPNKGDTNVPTWPQDDEYAGIPQKNYTKDVTGGWYDAG 80 (511)
T ss_dssp TTTTTHHHHHHHHHHHTBSSSCBCTTTTSSGGGCBCCSSSSCTTCBCSSSEEBCCTTSTTCCSCCCCCEECCCCSBCCSS
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 90799999999999984698986654356766556545545544566555655666553235788877653876432378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 D~~Ky~~~~a~s~~~L~~~y~~~~~~~~~~~~~~~~~~~~i~e~~~~~pdlLde~kwg~D~llk~~~~~~~~~~~~G~~~ 160 (511)
T d1ut9a1 81 DHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQNNGYPDILDEARWEIEFFKKMQVTEKEDPSIAGMVH 160 (511)
T ss_dssp SSCEEHHHHHHHHHHHHHHHHHHHHTTCTTSGGGSTTSSSSTTTTSSSCHHHHHHHHHHHHHHHHBCCTTTCGGGTTCEE
T ss_pred CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 73430440799999999999970531133211220232245434676188999999999999970068897326897215
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~AAalA~as~v~~~~d~~yA~~~L~~A~~~y~fa~~~~~~~~~~~~ 240 (511)
T d1ut9a1 161 HKIHDFRWTALGMLPHEDPQPRYLRPVSTAATLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQAALKHPDIYAEYTP 240 (511)
T ss_dssp CEEEESSCCCSSCCGGGCCSBEEECCEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHCTTCCBCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88767575774437767876157349998089999999999998604579999999999999999999977887556788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 320 (511)
T d1ut9a1 241 GSGGPGGGPYNDDYVGDEFYWAACELYVTTGKDEYKNYLMNSPHYLEMPAKMGENGGANGEDNGLWGCFTWGTTQGLGTI 320 (511)
T ss_dssp SSSSCBSCCCCBSCCHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTTCCCSBCC----SSGGGTTCBSSCCSSCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 76677766668765330999999999998598999999998766401012202334444456777665470101169999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~WGsn~~~~~~a~~~~~~~~~~~~~~y~~ 400 (511)
T d1ut9a1 321 TLALVENGLPATDIQKARNNIAKAADRWLENIEEQGYRLPIKQAEDERGGYPWGSNSFILNQMIVMGYAYDFTGDSKYLD 400 (511)
T ss_dssp HHHHSCCSSCHHHHHHHHHHHHHHHHHHHHHHHTCTTCCSCCCCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHCCTHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99985403880689999999999999999840058977744688766556675609999999999999987538678999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~a~~qldyiLG~NP~g~Syv~G~G~~~p~~pHHr~~~~~~~~~~~~~~~G~l~gGPn~~~~~~~l~g~~~gg~~~~~~y~ 480 (511)
T d1ut9a1 401 GMFDGISYLLGRNAMDQSYVTGYGERPLQNPHDRFWTPQTSKRFPAPPPGIISGGPNSRFEDPTINAAVKKDTPPQKCFI 480 (511)
T ss_dssp HHHHHHHHHBTCSTTCCBCBBTCSSSCBCCCBCSSSCTTTCTTSCCCCSSCBCCCCCTTCCSHHHHHHSCTTCCGGGCCC
T ss_pred HHHHHCCEECCCCCCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99982101234699997358627899999974421036765457889986836899887777640011358997034837
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
-
T Consensus 481 D~~~~y~~nE~aid~NA~~v~~la~l~~~~~ 511 (511)
T d1ut9a1 481 DHTDSWSTNEITVNWNAPFAWVTAYLDQYTD 511 (511)
T ss_dssp CCTTCHHHHBCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3653221030564877999999999987259
|
| >d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=38692.41 Aligned_cols=1 Identities=100% Similarity=2.297 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~~~~~Y~STRg~~~~~v~f~~a~~~G~a~DGGLy~P~~~P~~~~~~~~~~~~~~sy~ela~~i~~~fi~~~~i~~~~l~ 80 (511)
T d1kl7a_ 1 PNASQVYRSTRSSSPKTISFEEAIIQGLATDGGLFIPPTIPQVDQATLFNDWSKLSFQDLAFAIMRLYIAQEEIPDADLK 80 (511)
T ss_dssp CCTTSCBEETTCCSSCCBCHHHHHHHCSCTTSCCEECSSCCCCCHHHHHHTTTTCCHHHHHHHHHHTTSCTTTSCHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99771688898878998789999985778899505788679899899998885799999999999986595529999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~ii~~ay~~F~~~~v~pl~~~~~~~~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTS 160 (511)
T d1kl7a_ 81 DLIKRSYSTFRSDEVTPLVQNVTGDKENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATS 160 (511)
T ss_dssp HHHHHHTTTCSSTTSSCEECCTTCSSSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECS
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECC
T ss_conf 99999865799866676510255777765887622388644268615568999999998513322345674189998247
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 GDTG~Aa~~af~~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~~~~l~s~NS 240 (511)
T d1kl7a_ 161 GDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNS 240 (511)
T ss_dssp SSHHHHHHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--CCBCCCCS
T ss_pred CCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77418899986178883268961688886678998740377659999843676778899999973344402101024242
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 iNw~Rll~QivyYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~NdiL~rf~~tG~y~~~~ 320 (511)
T d1kl7a_ 241 INWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNENDILDRFLKSGLYERSD 320 (511)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCCHHHHHHHHSEEECCS
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHHCCCCCCCCC
T ss_conf 10101156689999999997531148815999506718899999999966897110788347865388873489987767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~v~~T~SPSMDI~vsSNfERLL~~l~~~~~~~gd~~~~~~~v~~~M~~f~~~G~~~l~~~~l~~l~~~F~s~svsD~et~ 400 (511)
T d1kl7a_ 321 KVAATLSPAMDILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETS 400 (511)
T ss_dssp SCCCCSCGGGCCSSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEEECHHHHH
T ss_conf 52676751776611578999999971421104633555999999999987549732341010034552467885789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~tIk~vye~~~n~~gYllDPHTAVG~~aa~k~~~~~~~~~~p~VvLATAHPaKFpdaV~~Alg~~~~~~~~~~~LP~~L~ 480 (511)
T d1kl7a_ 401 ETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADAVNNALSGFSNYSFEKDVLPEELK 480 (511)
T ss_dssp HHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHHHHHHHTTCSSCCHHHHTSCHHHH
T ss_pred HHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999607568858898489999999999874369998689995768454699999985777655556556778999
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
-
T Consensus 481 ~L~~~~e~~~~i~n~d~~~vk~~I~~~i~~~ 511 (511)
T d1kl7a_ 481 KLSTLKKKLKFIERADVELVKNAIEEELAKM 511 (511)
T ss_dssp SGGGSCCCCCEECSCCHHHHHHHHHCSCSCC
T ss_pred HHHCCCCCHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 8863771002225457999999999999509
|
| >d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=38690.08 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~e~R~~Vk~~F~~aw~~Y~~~A~~~Del~P~s~~~~~~~~g~~~~g~TlvDsLdTL~iMG~~~~~~~~~l~~e~~~~~ 80 (511)
T d1dl2a_ 1 GAGEMRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSSTLYKSEFEAEIQRSE 80 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSTTCSEEETTTTEEECSSTTCCCCCTTHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 95899999999999999999986788433547878877888776653213887678999837774211566999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~v~~~~~f~~~~~v~vFEttIR~LGGLLsAy~ls~~~~~~~~~~lL~kA~~lad~Ll~aF~~tptgiP~~~vn~~~~~~ 160 (511)
T d1dl2a_ 81 HWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQA 160 (511)
T ss_dssp HHHHHTCCCCCSSEEEHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHGGGGSSSSSCCCSEEETTTCCE
T ss_pred HHHHHCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCC
T ss_conf 99974368875775353001388787999999851365568727999999999998641146899889776500465778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~ae~gsl~LEf~~LS~lTGd~kY~~~a~r~~~~l~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~iGa~ 240 (511)
T d1dl2a_ 161 VKNHADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSR 240 (511)
T ss_dssp ECCSSGGGCEEHHHHSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHHHHHTHHHHHTTCCBSEECTTTCCBCSCCBCSSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 88877665540432005899999999985873999999999999987323356789877721357779715775666876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~DS~YEYLlK~~il~g~~~~~~~~~~a~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~hL~cF~~G~laLg~~~~ 320 (511)
T d1dl2a_ 241 GDSFYEYLLKQYLLTHETLYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHGQLSPKMDHLVCFMGGLLASGSTEG 320 (511)
T ss_dssp THHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTEEECTTTCCEEECBBTTCTTSCCBCEEEGGGGGHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHCCCCC
T ss_conf 64047778888872785688899999999999875137888874034320367787556653057651010676355344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~a~~~~~~~~~~~~~A~~l~~~c~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~y~LRPE~IE 400 (511)
T d1dl2a_ 321 LSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVE 400 (511)
T ss_dssp CCHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHTSTTSCCCSEEEECCSCCC-CCCEECSSSSEEECGGGCCBCCCCHHHH
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHH
T ss_conf 43101220233206778999999999999998463788870576257765444333345777423454333567747999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 S~fyLyR~TgD~~yr~~gw~if~ai~~~~r~~~G~~~~~~~a~i~dV~~~~~~~~D~meSF~laETLKYlYLlF~D~~~L 480 (511)
T d1dl2a_ 401 SIMFMYHLSHDHKYREWGAEIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILFLDEFDL 480 (511)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHEESTTCTTTCEECCEEESSSSSCEECSCCCHHHHHTHHHHHHHHTCSCCCT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 99999998588899999999999999873615677665563200143478998288536609999999999857898864
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
-
T Consensus 481 d~~VfnTEaHpl~i~~~~~~~~~~~~~~~~~ 511 (511)
T d1dl2a_ 481 TKVVFNTEAHPFPVLDEEILKSQSLTTGWSL 511 (511)
T ss_dssp TSEEECTTSCEEECCCHHHHHHTTCCCCCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6757877887577678133556788899879
|
| >d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Myeloperoxidase-like domain: Prostaglandin H2 synthase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=38700.62 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~~~~~p~~~~~~~~~t~~~~~w~~~~~~~~l~~~~~~~~~~~~~~~~~~pp~~~~~~~y~sw~~~~~~t~y~R~L 80 (511)
T d1cvua1 1 FLTRIKLLLKPTPNTVHYILTHFKGVWNIVNNIPFLRSLIMKYVLTSRSYLIDSPPTYNVHYGYKSWEAFSNLSYYTRAL 80 (511)
T ss_dssp HHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTCHHHHHHHHHHHHHHHHTTSCSSCCBBTTBSSCCHHHHHCTTBCBBSS
T ss_pred CHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCHHCCC
T ss_conf 90666766078975011335246388998846699999999999988875089999888888977702135666011368
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 PP~~~d~~~p~~~~~~~~LP~pr~vs~~l~~r~~~~p~p~~~s~m~~~faQ~i~Hd~~~t~~~~~~~~~N~~ts~lD~S~ 160 (511)
T d1cvua1 81 PPVADDCPTPMGVKGNKELPDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTAQFFKTDHKRGPGFTRGLGHGVDLNH 160 (511)
T ss_dssp CCCCTTCSBTTBSSSCSSCCCHHHHHHHHTBCSSCCBCTTCBBHHHHHHHHHHHTTTCCBCTTTCTTBBSCTTCSCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 99876788977678899892989999999646888899985589999999999997425789888443134521430422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 iYGss~~~~~~LRtf~~GkLk~~~~~g~~~pP~~~~~~~~~~~~~~~~~~~~f~~Gd~R~n~~pgL~~lhtlflREHNri 240 (511)
T d1cvua1 161 IYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHQRV 240 (511)
T ss_dssp HHCSSHHHHHHHBCSSTTCBCCEEETTEEECCBHHHHCCCCCCCTTSCGGGCBCCSSTTGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 45889999985618989871567889653799999876523578887416666407855366831356778888754499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ad~L~~~nP~W~DE~LFQ~AR~Ivia~~q~I~y~EyLp~llG~~~~~~~~p~~~~~~~~~~~~~~s~efaa~r~~Hslip 320 (511)
T d1cvua1 241 CDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNQQFQYQNRIASEFNTLYHWHPLLP 320 (511)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTCSSCCCCCGGGGTTSCCCSCCCCBHHHHHHTCCGGGSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999768998888999999999998885532998899863722110158734567767888504778888875221175
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~~~~gl~~~~~~~~~q~a~~~~~~~n~~~~~~dl~al~IqRgRd~Glp~yN~~R~~~gL 400 (511)
T d1cvua1 321 DTFNIEDQEYSFKQFLYNNSILLEHGLTQFVESFTRQIAGRVAGGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSL 400 (511)
T ss_dssp SSEEETTEEECHHHHTTCHHHHHHHHHHHHHHHHHHSBCBCSTTSSCBCGGGHHHHHHHHHHHHHTTCCCHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
T ss_conf 31105776566888743853143337899999999988653024458880556687862676753389858999998599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~sFedl~~d~~~~~~L~~lY~~vddVDL~vG~laE~~~~g~~~GpT~~~ii~~qf~r~r~gDRf~~e~~~~p~~ft~ 480 (511)
T d1cvua1 401 KPYTSFEELTGEKEMAAELKALYSDIDVMELYPALLVEKPRPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTFGG 480 (511)
T ss_dssp CCCSSHHHHHSSSHHHHHHHHHHSSGGGCCHHHHHHHSCCSTTCSSCHHHHHHHHHHHHHHHHTSGGGSTTTSSGGGGTS
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 88788878279999999999970986573454034146768999777899999999999997348760257777777675
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
+
T Consensus 481 ~~ql~~i~~~tLa~iic~N~~~~p~~~f~v~ 511 (511)
T d1cvua1 481 EVGFKIINTASIQSLICNNVKGCPFTSFNVQ 511 (511)
T ss_dssp HHHHHHHHTCCHHHHHHHHSTTCCCCCSBCC
T ss_pred HHHHHHHHHCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999977699999707999987665479
|
| >d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Myeloperoxidase-like domain: Prostaglandin H2 synthase species: Sheep (Ovis aries) [TaxId: 9940]
Probab=100.00 E-value=0 Score=38697.86 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~p~~~~~~~~~t~~~~~w~~~n~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~y~~w~~~~~~t~y~R~lP 80 (511)
T d1q4ga1 1 IWTWLRTTLRPSPSFIHFLLTHGRWLWDFVNATFIRDTLMRLVLTVRSNLIPSPPTYNIAHDYISWESFSNVSYYTRILP 80 (511)
T ss_dssp HHHHHHHHHCCCHHHHHHHHTSCHHHHHHHTTSTHHHHHHHHHHHHHHTTSCSSCCEESSCSSCCHHHHHCTTBCEESSC
T ss_pred CCHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCCC
T ss_conf 90567776078974001010155579999865999999999998876505899997778889787242367662222689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 P~~~d~~~p~~~~g~~~LP~pr~vs~~l~~r~~~~p~~~~~s~m~~~~aQ~i~HD~f~t~~~~~~~~~N~~t~~lD~S~I 160 (511)
T d1q4ga1 81 SVPRDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQFFKTSGKMGPGFTKALGHGVDLGHI 160 (511)
T ss_dssp CCCTTCSBTTBSSSCSSCCCHHHHHHHHTBCSSCCBCTTCBBHHHHHHHHHHHTTTCCBCTTTCTTBBSCTTCSSSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97767899867688998919799999982557877899865799999999998874137888897540123340033124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 YGss~~~~~~LRtf~~GkLk~~~~~g~~~pP~~~~~~~~~~~~~~~~~~~~f~aGd~R~n~~pgL~~lhtlflREHNria 240 (511)
T d1q4ga1 161 YGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVC 240 (511)
T ss_dssp HCSSHHHHHHHBCSSTTCBCCEEETTEEECCBTTTSCCCCCCCTTCCGGGSBCCSSTTGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHCCCHHHHHHHHHHHHHCCHHH
T ss_conf 78999999855289998701347888758998776552114778888055430376110576567767899987424998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 d~L~~~nP~W~DE~LFQ~AR~Ivia~~q~I~~~EyLp~llG~~~~~~~dp~~~~~~~~~~~~~i~~eFaa~y~~Hslip~ 320 (511)
T d1q4ga1 241 DLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLMPD 320 (511)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGGGTTSCCCCCCCCBHHHHHHTCCGGGSCS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 99986489988889999999999878045318766887617432125587435688877783378887777632234761
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~gl~~q~a~~~~~~~~~~~~~~dl~~~~IqRgRd~Glp~YN~~R~~~gL~ 400 (511)
T d1q4ga1 321 SFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDVIKESRVLRLQPFNEYRKRFGMK 400 (511)
T ss_dssp SEEETTEEECHHHHTTCSSHHHHHCHHHHHHHHHHSBCBCSSSSSCBCTTTHHHHHHHHHHHHHTTCCCHHHHHHHTTCC
T ss_pred HHHCCCCCCCHHHHHCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC
T ss_conf 43147766648776058123222054889998763833134666667706888899999987761898389999985998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~sFedl~~d~~~~~~L~~lYg~vddVDL~vG~laE~~~~G~~~GpT~~~ii~~qf~r~~~gDRf~~e~~~~~~~f~~~ 480 (511)
T d1q4ga1 401 PYTSFQELTGEKEMAAELEELYGDIDALEFYPGLLLEKCHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGE 480 (511)
T ss_dssp CCSSHHHHHSSSHHHHHHHHHHSSGGGCCHHHHHHHSCBCTTCSSBHHHHHHHHHHHHHHHHTSGGGSTTTCSGGGGTSH
T ss_pred CCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 67889881799999999999849876735763441266689997777999999999999873587612676777887799
Q ss_pred ------------------------------C
Q ss_conf ------------------------------9
Q 000235 1717 ------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------~ 1717 (1815)
-
T Consensus 481 ~ql~~i~~~tL~~iic~N~~~~~~~~f~vpd 511 (511)
T d1q4ga1 481 VGFNLVKTATLKKLVCLNTKTCPYVSFHVPD 511 (511)
T ss_dssp HHHHHHHTCCHHHHHHTTSSSCCCCCSBCCC
T ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9999999778999997079999856226999
|
| >d3ckca1 a.118.8.6 (A:42-551) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: SusD-like domain: Starch utilization system protein SusD species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=100.00 E-value=0 Score=38615.81 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~y~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~e~~tD~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 80 (510)
T d3ckca1 1 FDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEW 80 (510)
T ss_dssp CCHHHHHHHHHHTTTBCC----------CCSCTTTTCHHHHHHHHHHTTSSSEEESCTTSTTHHHHHHTCCCTTCHHHHH
T ss_pred CCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCCCCHHEECCCCCCCCHHHHHCCCCCCCCHHHHH
T ss_conf 92778999987630025767877875443555764520111011244464202436578742568854864888668899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~w~~~Y~~I~~aN~~i~~i~~~~~~~~~~~~aEA~flRA~~yf~L~~~yG~VPl~~~~~~~~~~r~s~~ev~~~I~~dL~ 160 (510)
T d3ckca1 81 VYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELN 160 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSEEEECSSCSSSCCEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999998164899999999999999999999999999809258993466556786899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~A~~~Lp~~~~~~~gR~tk~aA~allarvyL~~~~~~~~~~~~~A~~~a~~vi~~gy~L~~~y~~~f~~~n~~~~~~~~E 240 (510)
T d3ckca1 161 EIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQE 240 (510)
T ss_dssp HHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHTSSCCCCSSGGGGGSTTTTTCHHHHTT
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHCCC
T ss_conf 99862557555527724599999999999998654224065799999999886504667675777653315576100310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (510)
T d3ckca1 241 IILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQID 320 (510)
T ss_dssp EEEEECCCHHHHGGGBHHHHHHHTTCCTTCTTCSSSCCCCCEEECHHHHTTTCSSGGGSCCCCTTSCCCSSSCCSHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 37752036766556677532110144556777777788666567388999886345776666665446555556654334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~i~R~aEv 400 (510)
T d3ckca1 321 AFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEA 400 (510)
T ss_dssp HHHHHTTCSHHHHHHHHTCTTCCEECSSTTSCCCSSCSSCCSGGGSCEECCSCSSCTTCCCCSCSSSCCCCEEEEETHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHH
T ss_conf 33334564334300026876403530357776533346556666674210134446776545677667633899648999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~L~~AEA~~~~g~~A~~~lN~VR~RAg~~~~~~~~~~~~I~~ER~~EL~~Eg~R~~DL~Rwg~~~~~~~~~~~~~~~~~~ 480 (510)
T d3ckca1 401 YLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNG 480 (510)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHTTCSSCCSSCCHHHHHHHHHHHHTTSSCHHHHHHHTTCSSSTTCCCTTGGGCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHCCCCCCCCCCCCCC
T ss_conf 99999998640658999999999973999677578999999999999871554799997548254325023456765567
Q ss_pred -----------------------------C
Q ss_conf -----------------------------9
Q 000235 1717 -----------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~l~PIP~~ei~~N~~l~QNPGy~ 510 (510)
T d3ckca1 481 TSVASYYNKYPIPVSDINNNRNMSQNEGYK 510 (510)
T ss_dssp CCCCGGGGSCCCCHHHHHHCTTCCCCTTCC
T ss_pred CCCCCCCEEECCCHHHHHCCCCCCCCCCCC
T ss_conf 777887169578899993199987898989
|
| >d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor) {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Adenylylcyclase toxin (the edema factor) superfamily: Adenylylcyclase toxin (the edema factor) family: Adenylylcyclase toxin (the edema factor) domain: Adenylylcyclase toxin (the edema factor) species: Bacillus anthracis [TaxId: 1392]
Probab=100.00 E-value=0 Score=38548.01 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 d~i~~~~ge~Aik~sGIv~eH~~~~q~vA~E~N~IIgIRPVd~~STsLIesGyaTKGfhIKGKSSdWGPqAGFIpVDQ~f 80 (509)
T d1k8ta_ 1 DRIDVLKGEKALKASGLVPEHADAFKKIARELNTYILFRPVNKLATNLIKSGVATKGLNVHGKSSDWGPVAGYIPFDQDL 80 (509)
T ss_dssp CCTTCEETHHHHHHHCCCHHHHHHHHHHHHHHTEEEEECCCCTTTHHHHHTTCEECCTTCCCCCCSSSSSTTBCBSSGGG
T ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCHHH
T ss_conf 96425342456540499889999999999873928999679841366886688888861214468878775511368756
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 SKls~r~e~V~KfN~~v~~sI~~n~G~A~~V~L~Is~eRL~EL~~~GlI~~~~~e~~~G~~~~~~~~~~~~yeF~l~~~~ 160 (509)
T d1k8ta_ 81 SKKHGQQLAVEKGNLENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNNQVYEFRISDEN 160 (509)
T ss_dssp SSCSSCHHHHHHHHHHHHHHHHHTTTSEEEEECBCCHHHHHHHHHTTSCBCCCEEEETTEEEEEEBCCCSSEEEEEESSS
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCC
T ss_conf 42337688998877999999886058726763462599999998779834443235677157776179855899984787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~v~y~~~~g~~~~~~~~~~~kpveVma~p~~g~~kPlTADYDLF~V~P~isd~~~q~p~~~w~~sv~~~~~l~~~k~~~ 240 (509)
T d1k8ta_ 161 NEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTADYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVT 240 (509)
T ss_dssp CBEEEEECSSCCCTTSCCCSCEECEEEEEESSSSEEEEECCCCEEEEEEBHHHHHHHSCHHHHHHHSSSSSCSSCCHHHH
T ss_pred CEEEEECCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCHHEEEECCHHHCCCCCCHHHHCCCCCCCCCCHHHHHCC
T ss_conf 45774137774011034678761388767877777751003113056223776277776132023457754223444125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~f~rkeD~eiGniS~rik~lid~LN~~LgrtGy~G~eVVHHGaD~~NP~~~~aD~PiTffLP~G~~~l~~~~~~ 320 (509)
T d1k8ta_ 241 NLLIKYGIERKPDSTKGTLSNWQKQMLDRLNEAVKYTGYTGGDVVNHGTEQDNEEFPEKDNEIFIINPEGEFILTKNWEM 320 (509)
T ss_dssp HHHHHTTSSCCSSCCTTCCCHHHHHHHHHHHHHHHTTTCCSSCSCCCCC-----------CCEEEECTTSCEEEESSHHH
T ss_pred CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECCHHH
T ss_conf 55766555302561037478899999999999971156777644333755468898766786079906987565045899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~fi~~ni~~~~~~~y~nr~y~k~~~~n~~~i~w~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
T d1k8ta_ 321 TGRFIEKNITGKDYLYYFNRSYNKIAPGNKAYIEWTDPITKAKINTIPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAK 400 (509)
T ss_dssp HHHHHHHHTGGGTBCCCCSSCCCSSCCCSSCCCCEECTTTCCEECSCCCHHHHHHHHHHHHHHHCSCSBCCSSCSSHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEHHHHHHCCCCCCEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHH
T ss_conf 99999974226763898513456634665241663688523232058876999998899986426226723565212333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
T d1k8ta_ 401 KESVKKIAGYLSDYYNSANHIFSQEKKRKISIFRGIQAYNEIENVLKSKQIAPEYKNYFQYLKERITNQVQLLLTHQKSN 480 (509)
T ss_dssp HHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54599997668874263334223110201248798888999999986663389999999999999999999998520054
Q ss_pred ----------------------------C
Q ss_conf ----------------------------9
Q 000235 1717 ----------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------~ 1717 (1815)
+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (509)
T d1k8ta_ 481 IEFKLLYKQLNFTENETDNFEVFQKIIDE 509 (509)
T ss_dssp HHHHHHHTTCCTTSCHHHHHHHHHHHHHC
T ss_pred EEHHHHHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf 44899886517775767418999986439
|
| >d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: 4Fe-4S ferredoxins family: Ferredoxin domains from multidomain proteins domain: Respiratory nitrate reductase 1 beta chain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=38542.99 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~q~~mvidldkCIGC~aC~vACK~~w~~~~g~e~~~~NnVet~p~~gyp~~~e~~~~~~~~~~~~~~g~~~~~~~~ 80 (509)
T d1y5ib1 1 MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNVETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGN 80 (509)
T ss_dssp CCEEEEEEEEEETTTCCCCCHHHHHHHHHHSCSTTSTTCCSSEEEEESSCTTTTTTTCHHHHCCSEEECTTSCEEETTCC
T ss_pred CCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCC
T ss_conf 97523789998688488978745352751126864221211465577888888551343345785367514533442244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~l~~~~~~~~~p~idd~~e~~~~~~~~l~~~~~~~~~~p~a~p~s~~~g~~~~~~~~~~n~~d~~~G~~~~~~~d~n 160 (509)
T d1y5ib1 81 RAMLLGKIFANPHLPGIDDYYEPFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN 160 (509)
T ss_dssp HHHHHTTTTSCTTCCCHHHHCCCEEECTHHHHHCCTTCSSCCCBCEEETTTCCBCSCCCCCTTTTTTTCBCHHHHTTCGG
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 03112220157678740124564321134443066566566555555546655445566677632245665333556700
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~g~~p~~~~~~~~~~C~hC~~~~C~~~CP~gAi~~~~e~G~v~id~~~CigC~~C~~aCPy~~~~~~~~~~~ 240 (509)
T d1y5ib1 161 FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGK 240 (509)
T ss_dssp GTTCCCGGGGSGGGCCCEEEEECCCCCSSCHHHHHCTTCCEEEETTTCCEEECTTTCCCCCCHHHHCTTCCEEEETTTTE
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCEEEECCCCCEEECHHHCCCHHHHHHHCCCCCEEECCCCCC
T ss_conf 54433544067787069981110168998533555696764785489809981200306378874099997374488884
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~KC~~C~~r~~~G~~paCv~~Cp~~A~~~g~~~d~~~~v~~~~~~~~~~~l~~a~~~~~~~p~~~~~i~~Alk~lgf~~ 320 (509)
T d1y5ib1 241 SEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGIPLS 320 (509)
T ss_dssp EEECCTTHHHHTTTCCCHHHHTCTTCCEEEEEEEEEGGGHHHHHTCSSGGGHHHHHHTTBCCTTCHHHHHHHHHTTCCHH
T ss_pred EEECCCCHHHHHCCCCCHHHHHCCHHHHHHCHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHH
T ss_conf 22145445677668878336668575655330036077777876343035567776864589998689999998239867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 v~d~a~~adl~~~~~~~~~~l~~~~e~~~lPm~tsccP~~~~~~~v~~~e~~~p~l~p~lS~~rsP~~~~a~l~k~~~~~ 400 (509)
T d1y5ib1 321 VIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTK 400 (509)
T ss_dssp HHHHHTTCHHHHHHHTSCCCEESCGGGSSCCSEEEECCCCCBCCCSSSCCCBTTBTSCCGGGBSSCHHHHHHHHSTTCHH
T ss_pred HEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCC
T ss_conf 61441259509999999887451653277874898398963202333233468876684020268499999980567851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~ia~~~~kr~e~~~~~~~~~~~~d~~LT~~e~~~m~r~~~I~~~edr~vip~~~~e~~~~~~~~~~g~G~~f 480 (509)
T d1y5ib1 401 PVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIANYEDRFVVPSSHRELAREAFPEKNGCGFTF 480 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHTCCHHHHHHHHHHHTTCCHHHHEECCCCCTTTTSCHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 13210157667499988876067666201310588999999999984612132133668655101333443216740432
Q ss_pred ----------------------------C
Q ss_conf ----------------------------9
Q 000235 1717 ----------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------~ 1717 (1815)
.
T Consensus 481 ~~G~sggV~ea~L~~~~~~~~~~~~~~~~ 509 (509)
T d1y5ib1 481 GDGCHGSDTKFNLFNSRRIDAIDVTSKTE 509 (509)
T ss_dssp CCSCTTCSSCCCTTCCCCTTSCCSCCSCC
T ss_pred CCCCCCCEEHHHHCCCCCCCCCCCEECCC
T ss_conf 79876532122331788564235400469
|
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=38547.40 Aligned_cols=1 Identities=100% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 R~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~ 80 (509)
T d2a65a1 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL 80 (509)
T ss_dssp CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99998738999999999854337875248988268800099999999999999999999982777888641799999885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (509)
T d2a65a1 81 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKP 160 (509)
T ss_dssp SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 44762057749999999999999999999999999999617689876456686310264377777642466688763463
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l~~~~~~l~i~~~~l~~~~gga~~gl~~~~~pd~~~L~~~~vW 240 (509)
T d2a65a1 161 SLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVW 240 (509)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHCCHHHH
T ss_conf 48999999999999999985103210444568988777777888998864146678768987452038998895683889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~F 320 (509)
T d2a65a1 241 IAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGF 320 (509)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEHHHCCCHHHHCCCCEEEEECCCCEEECCCCCHHHHHHEEEECCCCCCCCCCCCCCCCHH
T ss_conf 99999984531056774254221066200103222189863631010103202233430221333541445466787304
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 v~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 400 (509)
T d2a65a1 321 ITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMD 400 (509)
T ss_dssp THHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHEEEEEEHHHHHHHHHCCHHHHHH
T ss_conf 02577760477541379999999999999877336330448989864986360352306788725247887353188899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~l~~~~l~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~~~~~~~~~~~~~~~w 480 (509)
T d2a65a1 401 FWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVW 480 (509)
T ss_dssp HHTTTHHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHCCCCCHHHHHHHHEEEEEHHHHHHEEEHHHHHCCCCCCCCCCCCHH
T ss_conf 99999999999999986022375389999999847898778999874034238536352542386421364578578368
Q ss_pred ----------------------------C
Q ss_conf ----------------------------9
Q 000235 1717 ----------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 509 (509)
T d2a65a1 481 ITRFYIIGLFLFLTFLVFLAERRRNHESA 509 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999997315789
|
| >d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: SusD-like domain: Uncharacterized protein BT3984 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=100.00 E-value=0 Score=38389.66 Aligned_cols=1 Identities=100% Similarity=2.397 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~w~~~y~~~ 80 (507)
T d3cgha1 1 PYEAPDLSADGYALGSAMNNLAGCVVSPDVNTAQFTDCLLGGPLGGYFADSNAGFTETISNFNPKDDWSRVFLKSDKIIP 80 (507)
T ss_dssp CCCCCCTTSSHHHHHHHHHHHHTTTSCSSHHHHHHHHTTTHHHHTTSEEECCTTCCSCTTTTCCCHHHHTHHHHCTTTHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98966577661068789877887435877547899988634763112256666756564510067507765557678999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~a~A~~lrA~~y~~L~d~fGdIPy~~a~~~~~~~~~~ds~~eVY~~Ii~DL~~Ai~~L~ 160 (507)
T d3cgha1 81 TLYSNLTQVKLVSQNTNDPVPYAIAQVIKVAAMHRVTDAFGPIPYSQIGANGEIATPYDSQEVTYNTFFDELNAAIATLN 160 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSSBCCTTCCTTCCCCSCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987523565488999999999999999999809963430577877689989999999999999999998631
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~D~~y~G~~~~w~~~A~~L~ar~~l~~~~~~~~~A~~~a~~~i~~~~~~l~~s~~d~~~~~~~~~~~n~~ 240 (507)
T d3cgha1 161 ENSNEQLVPTADYIYKGDVKKWIRFANSLKLRLAIRIAYANPVKAQQMAEEAVNPANGGVIESNADNATWNYFETSQNPI 240 (507)
T ss_dssp HTTTCBCCGGGCTTTTTBHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHCGGGTCCCCSGGGCEEECCCTTSCCHH
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCH
T ss_conf 15776543201244076199999999999999998853013789999999865401356313543320231147878830
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dpr~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ 320 (507)
T d3cgha1 241 YVATRYNQVQTSDHGGVPCLTGGDTHAAADIICYMNGYKDNRREKFFTKSEWAGQDYVGMRRGIVIPELKTTGHKYSGVN 320 (507)
T ss_dssp HHHHHTTCCCGGGTTTSCCCSCSSEEEBHHHHHHHHHTTCTTHHHHBCCCCSTTCSCCCBCSSSCCCCTTTTGGGSCCBC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34321243455665554234665541031688885057884143212136667653012102335665554466567655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~i~ryAEv~Li~AEA~~r~g~~~~~~A~~~y~~gi~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (507)
T d3cgha1 321 IAPTSPLYWMNAAEVAFLRAEGQAVFNFSMGGTAESFYNQGIRLSFEQWGADGVEDYLKDDVNKPTAYTDPAGTNTYQNA 400 (507)
T ss_dssp CCTTCCEEEECHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHHHHTCCCHHHHHTCCSCCCCCBCCTTSSSCBCSC
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 57778746876999878899998730787657799999999999998745310566753035663213674211356655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~s~~~~L~~I~~Qk~ia~~~~g~e~w~d~RRtg~p~~~~~~~~~~~~~~~~~~~p~R~~Yp~~E~~~N~ 480 (507)
T d3cgha1 401 LSNITIKWNDSADKEEKQERIIVQKWIANWQLGNEAWADFRRTGYPKLIPVKENKSGGVVDSEKGARRMPYPLDEFVSNK 480 (507)
T ss_dssp SCCCCSSCCTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHCCSCCCCCSSCCSTTSSCTTTCCCSCCCCTTHHHHSH
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHCCH
T ss_conf 31023335456786999999999999997687055899988039975567765888775667886257546776875099
Q ss_pred --------------------------C
Q ss_conf --------------------------9
Q 000235 1717 --------------------------A 1717 (1815)
Q Consensus 1717 --------------------------~ 1717 (1815)
+
T Consensus 481 ~n~~~a~~~~~~g~d~~~~~~wWd~~~ 507 (507)
T d3cgha1 481 ANVEYAIANYLHGADNMATDVWWASKK 507 (507)
T ss_dssp HHHHHHHHHTSCSCSSTTSCCTTCCCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 999999998418997567868631789
|
| >d1dpea_ c.94.1.1 (A:) Dipeptide-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Dipeptide-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=38388.75 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~tl~~~~~~~p~~ldP~~~~~~~~~~~~~~~~~~~Lv~~d~~~~~~~P~LA~~w~~s~d~~~~tf~Lr~~~~wsDG~~~~ 80 (507)
T d1dpea_ 1 KTLVYCSEGSPEGFNPQLFISGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFK 80 (507)
T ss_dssp CEEEEEESSCCSCSCGGGCCCHHHHHHTHHHHCCCSEEECTTSSCEEESSEEEEEECTTSCEEEEEECSSCCCCCCSSCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCEEEHHHEEEEEECCCCCEEEEEECCCCEECCCCCCC
T ss_conf 96999527997936522156656699999987074654859998798536206778899978999969999878998666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~plTA~Dv~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T d1dpea_ 81 PTRELNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSK 160 (507)
T ss_dssp CSSCCCHHHHHHHHHHHHCTTSTTTTGGGCCCHHHHHTTHHHHEEEEEEEETTEEEEEESSCCTTHHHHTTSGGGCCCCH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHCCCCCHHHCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 88944499999999997477872444203204454134552010136875488448873477764221124453323330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~pvgsGPy~l~~~~~~~~i~l~~n~~y~~~~p~~d~I~~~~~~~~~~~~~~~~~g~~d~~~~~ 240 (507)
T d1dpea_ 161 EYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYP 240 (507)
T ss_dssp HHHHHHHHTTCTTHHHHSCCCSSSEEEEEEETTTEEEEEECTTCSSCCCSCSEEEEEECCCHHHHHHHHHTTSCSBCSSC
T ss_pred HHCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 00002222245434455613056507667426835999965776676400008997314422213443321320023578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~d~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (507)
T d1dpea_ 241 NPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDD 320 (507)
T ss_dssp CGGGHHHHHHCTTEEEEEEECSEEEEEEECTTSTTTTSHHHHHHHHHTSCHHHHHHHHHTTSEEECSSSSCTTSTTCCTT
T ss_pred CHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97898987533444320024640221033457888899999999999876566678873897666545449852355765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~kA~~ll~~aG~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~iGi~v~~~~~~~~~~~~~~~~~~~d~ 400 (507)
T d1dpea_ 321 VQDYTYDPEKAKALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQT 400 (507)
T ss_dssp CCCCCCCHHHHHHHHHHTTCTTCEEEEEECCSSCBTTBSCHHHHHHHHHHHHHTTTEEEEEECCCHHHHHHHHHTTCCSE
T ss_pred CCCCCCCHHHHHHCCCCCEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCC
T ss_conf 33223237775312321001148752024301223577789999998777664303220244045146666654421033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~N~~~~~n~~~d~Ll~~a~~~~d~~~r~~~~~~~~~~l~e~~~~ipl~~~~~ 480 (507)
T d1dpea_ 401 VMMGWTGDNGDPDNFFATEFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTV 480 (507)
T ss_dssp EEEEEECSSSCTHHHHHHHHSHHHHHHTCCTTCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCSEEEEEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCE
T ss_conf 33334689998799999985257888886546679999999999986369999999999999999997099999997448
Q ss_pred --------------------------C
Q ss_conf --------------------------9
Q 000235 1717 --------------------------A 1717 (1815)
Q Consensus 1717 --------------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~v~g~~~~p~g~~~~~~v~i~ 507 (507)
T d1dpea_ 481 FEPVRKEVKGYVVDPLGKHHFENVSIE 507 (507)
T ss_dssp EEEEETTEESCCCCTTSCCCCTTCEEC
T ss_pred EEEECCCCCCEEECCCCCEEEEEEEEC
T ss_conf 999889977604999888785468989
|
| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Alkylsulfatase-like domain: Alkylsulfatase SdsA1 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=38244.21 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~l~r~~ 80 (505)
T d2cfua2 1 TTAPKPPSAFTVEAQRRVEAELPFADRADFERADRGLIRRPERLLIRNPDGSVAWQLGGYDFLLDGKPRDSINPSLQRQA 80 (505)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHSCTTCCHHHHHHHTTEEECCSSCEEECTTSCEEEECGGGGGGTTCCCCTTSCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCEEECHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 99999978999999999981289998899998757874568856146788877523056577526999898598999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~gl~eV~dgVy~~rG~~~sN~~~I~gddG~iVIDtg~s~e~a~~~l~~~~~~l~~kPV~aVI~TH~H~DH~GGa~ 160 (505)
T d2cfua2 81 LLNLKYGLFEVAEGIYQVRGFDLANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVR 160 (505)
T ss_dssp HHTTCCEEEEEETTEEEEESSSSSCEEEEECSSSEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGG
T ss_pred HHHCCCCEEEEECCEEEEEECCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 87535880897289899970586433589869879999799998999999999987447998389996899700131589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~e~~~~~~~~~~IiA~~~~~~~~~~~~~~~~~~~~rr~~~q~g~~L~~~~~~~~~~~lg~~~~~g~~~~~~p~~~~~~ 240 (505)
T d2cfua2 161 GLVEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEG 240 (505)
T ss_dssp GTCCHHHHHTTSSEEEEETTHHHHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECT
T ss_pred HHHHHHHHCCCCCEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 99630343268734995167899987521012677888888888764043511100012355667677646799768723
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~l~igG~~ie~i~tpG~HTp~~l~~y~Pe~kvL~sGD~v~~~~~n~~t~rg~~~rd~~~w~~~L~~l~~l~~~~~ev 320 (505)
T d2cfua2 241 EGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENVVGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEV 320 (505)
T ss_dssp TEEEEEETTEEEEEEECTTSSSSSBEEEEETTTTEEECTTTSCSSCCCSSCTTCCCCCCHHHHHHHHHHHHHHTGGGCSE
T ss_pred CCEEEEECCEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 62699608489999977898986666999458897998456456676766776787555056999999999871789768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 lvpgHg~Pi~G~~~I~~~L~~~rD~~~~i~Dqt~~~~N~G~t~~Ei~~~i~lP~~l~~~~~~~~~Yg~~~~~vr~iy~~y 400 (505)
T d2cfua2 321 MFAVHNWPRWGNAEIVEVLEKQRDLYGYLHDQTLHLANQGVTIGQVHNRLRLPPSLDQEWYDRGYHGSVSHNARAVLNRY 400 (505)
T ss_dssp EECSSSCCEESHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCTTTGGGTCCCCHHHHTCGGGSCSSSCHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 95689852034248999999999999999999999997799988998875299667517553141055888899999883
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~GW~dgnp~~L~p~~~~~~a~~~v~~~GG~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~ 480 (505)
T d2cfua2 401 LGYYDGNPATLDPLSPEDSAGRYVEYMGGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 480 (505)
T ss_dssp HCSCCSCGGGTSCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 57656982305779989999999998599999999999999887898999999999962999999999999999999985
Q ss_pred ------------------------C
Q ss_conf ------------------------9
Q 000235 1717 ------------------------A 1717 (1815)
Q Consensus 1717 ------------------------~ 1717 (1815)
+
T Consensus 481 ~~~~~~rn~yl~~A~elr~g~~~~~ 505 (505)
T d2cfua2 481 AENAGWRNSYLSAAYELRHGVPRDQ 505 (505)
T ss_dssp CSSHHHHHHHHHHHHHHHHCCCSCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7288899999999999863797789
|
| >d2cvca1 a.138.1.1 (A:40-544) 16-heme cytochrome c HmcA {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Cytochrome c3-like domain: 16-heme cytochrome c HmcA species: Desulfovibrio vulgaris [TaxId: 881]
Probab=100.00 E-value=0 Score=38235.48 Aligned_cols=1 Identities=100% Similarity=0.636 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~H~~H~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~CH~ 80 (505)
T d2cvca1 1 EKRADLIEIGAMERFGKLDLPKVAFRHDQHTTAVTGMGKDCAACHKSKDGKMSLKFMRLDDNSAAELKEIYHANCIGCHT 80 (505)
T ss_dssp CEESCEEEECGGGGGSCCSSCCEEEEHHHHHHHHHHTTCCGGGTCCEETTEECSSSSCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 98688288763446675417876244613001346567532443778677645443344656510013503587024291
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~ 160 (505)
T d2cvca1 81 DLAKAGKKTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVWGKNKE 160 (505)
T ss_dssp HHHHTTCCCCCCTTCHHHHSCSSCSSEECCCCCCCCHHHHHHHHTCTTSCCCSSSSCCGGGTCCEEETTTTEEECCTTCC
T ss_pred CHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 75536877899898814238898776665655665544455245565444557888852688987445666534444568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~c~~Ch~~~~~~~~~~~~~~~~~~c~~ch~~~~~~~~~~~~~~c~~Ch~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ch 240 (505)
T d2cvca1 161 DSCRACHGEKPVDKRPALDTAAHTACISCHMDVAKTKAETGPVNCAGCHAPEAQAKFKVVREVPRLDRGQPDAALILPVP 240 (505)
T ss_dssp CCGGGTCCSSCBTTBCCHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHCHHHHTTSCCCSSCCCCCSSCCSEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87513356544677542222344123220334222445555666755567765554333357763346886534013655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~~~~~~~C~~Ch~~~~~~ 320 (505)
T d2cvca1 241 GKDAPREMKGTMKPVAFDHKAHEAKANDCRTCHHVRIDTCTACHTVNGTADSKFVQLEKAMHQPDSMRSCVGCHNTRVQQ 320 (505)
T ss_dssp CSSSSSCCCCCSCCEEEEHHHHHHHSSCSTTTSSSCSSCSTTTCCTTCCGGGTTCCHHHHHHCTTCTTSHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHCCCCC
T ss_conf 67765555677677543344553346764123666676642156766765544333443334566441121000013335
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~c~~ch~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (505)
T d2cvca1 321 PTCAGCHGFIKPTKSDAQCGVCHVAAPGFDAKQVEAGALLNLKAEQRSQVAASMLSARPQPKGTFDLNDIPEKVVIGSIA 400 (505)
T ss_dssp HHHHHHHTTCCCCCCHHHHTTTBCCCTTCCHHHHTTTTTTTCCHHHHHHHHHHHHHHSCCCCCCCCGGGSCSCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54454556767667887451245678766666656663334664455565445544679887763445688752104568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~C~~CH~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~~~C 480 (505)
T d2cvca1 401 KEYQPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTPPKCASCHGKPFDADRGDRPGLKAAYHQQC 480 (505)
T ss_dssp SSBCCEEECHHHHHHHHHHHHTTCHHHHHHCCSTTTGGGGTSTTSCSCSSCCCGGGTSSCC------CCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 86655456765431110248789973456679999740155899877788873001578765555566776447577764
Q ss_pred ------------------------C
Q ss_conf ------------------------9
Q 000235 1717 ------------------------A 1717 (1815)
Q Consensus 1717 ------------------------~ 1717 (1815)
.
T Consensus 481 ~~CH~~~~~~~~~~~~C~~CH~~~~ 505 (505)
T d2cvca1 481 MGCHDRMKIEKPANTACVDCHKERA 505 (505)
T ss_dssp HHHHHHHTCCSSCTTCTTSSSCBSC
T ss_pred HHHHHHHCCCCCCCCCCHHHCCCCC
T ss_conf 5554442468998872234388889
|
| >d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: CH domain-like superfamily: Calponin-homology domain, CH-domain family: Calponin-homology domain, CH-domain domain: Fimbrin (Plastin), actin-crosslinking domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=0 Score=38231.79 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~e~qk~tft~WiN~~L~~~~~l~~~~p~~~~v~dL~~dl~DG~~L~~Lle~l~~~~i~~~~l~~~~~~~~~~~~~~leN 80 (505)
T d1rt8a_ 1 INEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIEN 80 (505)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 96788999999999871668663224789960666999975299999999997388766244054323453026569999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 v~~aL~~~k~~~~~~~~nI~~~dI~dg~~~liLgLlW~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~LL~ 160 (505)
T d1rt8a_ 81 NNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLR 160 (505)
T ss_dssp HHHHHHHHHHHSSCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHSSCCC----------------CHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999999855896450358211546666463111788888887754302356112103455644200013799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 W~~~~~~~~~~~~~v~nf~~~~~dG~a~~~Li~~~~P~l~~~~~~~~~~~~~n~~~a~~~ae~lgi~~~l~p~Div~~~~ 240 (505)
T d1rt8a_ 161 WFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEKLDCRKYLTPTAMVAGNP 240 (505)
T ss_dssp HHHHHHHHTTCSCCCSCSSGGGTTSHHHHHHHHHHCTTTCCSGGGGCCCHHHHHHHHHHHHHTTTCCCSCCHHHHHTTCH
T ss_pred HHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCH
T ss_conf 99998552389953011775454558999999987857567230375799999999999999839976578999538872
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 k~~l~~va~l~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~WiNs~l~~~~I~dL~~Dl~DG~~L~~Lle~l~~~~~ 320 (505)
T d1rt8a_ 241 KLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFTLWLNSLDVTPSIHDFFNNLRDGLILLQAYDKITPNTV 320 (505)
T ss_dssp HHHHHHHHHHHHHCCCCCC-------------CHHHHHHHHHHHHHHHTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 46799999886128898745531111331000122137999999986148998677888625658999999999678876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~r~~~ieN~~~al~~~~~~~i~lv~I~~~dIvdGn~kliLgllW~l~~~~~~~~~~~~~~~~~~~ 400 (505)
T d1rt8a_ 321 NWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSLSRGGKTL 400 (505)
T ss_dssp CGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC------CC
T ss_pred CCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 71011566211431138999999999999999727400567857655137676899999999999986543202230025
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~lL~Wv~~~~~~~~~~~~I~nF~~~s~~DG~a~~~Li~~~~P~~i~~~~~~~~~~~e~~~~n~~~a~~~A~~lgi~~ 480 (505)
T d1rt8a_ 401 SDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIARKLGAVI 480 (505)
T ss_dssp CHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999843348995300489998756499999999878798588892678973569999999999999839973
Q ss_pred ------------------------C
Q ss_conf ------------------------9
Q 000235 1717 ------------------------A 1717 (1815)
Q Consensus 1717 ------------------------~ 1717 (1815)
-
T Consensus 481 ll~peDi~~~~~ksimtyvssL~~~ 505 (505)
T d1rt8a_ 481 FILPEDIVAVRPRLVLHFIGSLMAV 505 (505)
T ss_dssp CCCHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 1789886999865137766677329
|
| >d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Oligo-peptide binding protein (OPPA) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=38158.18 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~p~~GGtl~~~~~~~~~~ldp~~~~~~~~~~~~~~v~~~L~~~~~~~~~~p~lA~~~~~s~d~~~~tf~LR~g~~wsDG~ 80 (504)
T d1xoca1 1 KPQQGGDLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLNVKLSLAESIKELDGGLAYDVKIKKGVKFHDGK 80 (504)
T ss_dssp CCCCCCEEEEEESSCCCCSCTTTCCBHHHHHHHHHHCCCSEEECTTSCEEESSEEEEEEEGGGTEEEEEECSSCBCTTSC
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCC
T ss_conf 96988489998479998467110477389999999853022599399796633879899899819999959959989939
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~vTA~Dv~~s~~~~~~~~~~~~~~~~~~~i~~v~~~d~~tv~i~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (504)
T d1xoca1 81 ELTADDVVFTYSVPLSKDYKGERGSTYEMLKSVEKKGDYEVLFKLKYKDGNFYNNALDSTAILPKHILGNVPIADLEENE 160 (504)
T ss_dssp BCCHHHHHHHHHGGGSTTCCCSCGGGTTTEEEEEEEETTEEEEEESSCCTHHHHTHHHHCCCCCHHHHTTSCGGGTTTSG
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 98599999999998577767652001001012233543024564056885221013454200223322100012200023
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~vgtGPy~l~~~~~~~~~~l~~n~~y~~~~p~~d~i~~~~~~~~~~~~~~~~~g~~D~~~~~~~~~~~~~~~~~~ 240 (504)
T d1xoca1 161 FNRKKPIGSGPFKFKEWKQGQYIKLEANDDYFEGRPYLDTVTYKVIPDANAAEAQLQAGDINFFNVPATDYKTAEKFNNL 240 (504)
T ss_dssp GGTTCCCCSSSEEEEEEETTTEEEEEECTTCTTCCCSSSEEEEEECSCHHHHHHHHHHTSCCBEECCGGGHHHHTTSTTE
T ss_pred CCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHCCEEEEEEECCCHHHHHHHHHCCC
T ss_conf 34568653331246530157521268435455776445337999922202333321142640461130158999862033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~n~~~~~~~d~~vR~Al~~aidr~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~A~ 320 (504)
T d1xoca1 241 KIVTDLALSYVYIGWNEKNELFKDKKVRQALTTALDRESIVSQVLDGDGEVAYIPESPLSWNYPKDIDVPKFEYNEKKAK 320 (504)
T ss_dssp EEEEEECSEEEEEEECTTSGGGCCHHHHHHHHHTCCHHHHHHHHSTTCSEECCSSSCTTSTTSCTTCCCCCCCCCHHHHH
T ss_pred CCCCCCCCCCEEEEHHCCCCCCCCHHHHHHHHHCCCHHHHHHEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 22234543010121002655468999986555201122333200036734534578987678875456654431789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~lL~~ag~~~~~~~~~~~~~g~~l~l~l~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (504)
T d1xoca1 321 QMLAEAGWKDTNGDGILDKDGKKFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMV 400 (504)
T ss_dssp HHHHHTTCBCSSSSSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHSTTTCCCSEEE
T ss_pred HHHHHCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99997678657887133255655328998278861489999999999997399732202313788988764212434222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~n~~~d~li~~a~~~~d~~~r~~~~~~~~~~l~~~~p~ipl~~~~~~~~~~ 480 (504)
T d1xoca1 401 MGWSLSTFPDQYDIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQYSKEYEQIYQKIAEDQPYTFLYYPNNHMAMP 480 (504)
T ss_dssp EEEECCSSCCTHHHHSGGGTTTSSCTTCCCCHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHCSEEEEEECEEEEEEE
T ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEC
T ss_conf 35667998448888740478998656776999999999998615999999999999999999749999999816799987
Q ss_pred -----------------------C
Q ss_conf -----------------------9
Q 000235 1717 -----------------------A 1717 (1815)
Q Consensus 1717 -----------------------~ 1717 (1815)
-
T Consensus 481 ~~v~G~~~~p~~~~~~~~~ww~~~ 504 (504)
T d1xoca1 481 ENLEGYKYHPKRDLYNIEKWWLAK 504 (504)
T ss_dssp TTEESCCCCSSCTTTTGGGCEECC
T ss_pred CCCCCCEECCCCCCCCEEEEEEEC
T ss_conf 886781668987766818899709
|
| >d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Vibrio harveyi [TaxId: 669]
Probab=100.00 E-value=0 Score=38154.78 Aligned_cols=1 Identities=100% Similarity=0.835 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 t~~~f~~~nP~tge~l~~~~~~a~~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~Gkp~ 80 (504)
T d1ez0a_ 1 TDNVFYATNAFTGEALPLAFPVHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPE 80 (504)
T ss_dssp CCCEEEEECTTTSSEEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred CCCEEEEECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99869988899989812000699999999999999999999833999999999999999999789999999999809888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~a~~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~PwNfPl~~~~~~~~~a~ALa 160 (504)
T d1ez0a_ 81 VRLTGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASALA 160 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCEEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSCTTTTSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999998763032222000246544667664236899427558888314332111113677999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 aGN~VVlKPs~~tp~ta~~~~~li~~a~~~aGlP~Gv~~~v~g~~~~~g~~L~~~p~v~~V~FTGS~~~g~~i~~~aa~~ 240 (504)
T d1ez0a_ 161 AGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALFNLAHER 240 (504)
T ss_dssp HTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHHHS
T ss_pred HHCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCC
T ss_conf 74032004763212201455567887765312136720004666533343201232210222125217888887630001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~l~~ElGGknp~iV~~dAd~~~Aa~~~~~~~~~~~~~GQ~C~a~~rv~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (504)
T d1ez0a_ 241 PEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQSPSTLLT 320 (504)
T ss_dssp SSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCCCEEEEESSHHHHHHHHHHHHHHHHCCCBCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 56532112455544333433213788766420122121005741215654321234567777666566543202333346
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 p~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eE~FGPvl~i~~~~~~~eai~~an~~~~g 400 (504)
T d1ez0a_ 321 PGIRDSYQSQVVSRGSDDGIDVTFSQAESPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGS 400 (504)
T ss_dssp HHHHHHHHHHHHHHHTSTTEEEEECCCCTTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEESSHHHHHHHHHTCCCE
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 63054443344234566653100112346655776555555555553222056657755305439999999999779999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 L~a~I~t~d~d~~~a~~~~~~l~~~aG~v~iN~~~tG~~v~~~~~~ggpf~g~~~sg~~~~G~~~i~~f~r~v~~q~~p~ 480 (504)
T d1ez0a_ 401 LTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSASTSVGAEAIHRWLRPVAYQALPE 480 (504)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCSSCCCCSSSCCCCCSTTSCSCSSCCSSSGGGGGGGEEEEEEESCCG
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHCCCCC
T ss_conf 56999944554999999999986774289996876665635767789898885799987522999999735564305971
Q ss_pred -----------------------C
Q ss_conf -----------------------9
Q 000235 1717 -----------------------A 1717 (1815)
Q Consensus 1717 -----------------------~ 1717 (1815)
.
T Consensus 481 ~~lP~~l~~~np~~~~r~v~~~~~ 504 (504)
T d1ez0a_ 481 SLLPDSLKAENPLEIARAVDGKAA 504 (504)
T ss_dssp GGSCGGGSTTCTTCCCEEETTSCC
T ss_pred CCCCHHHHHCCCCCCCCCCCCCCC
T ss_conf 329966731597787616799869
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=0 Score=38084.79 Aligned_cols=1 Identities=0% Similarity=-0.428 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v 80 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCE
T ss_conf 98889999999986899769998999938719999999999999999769699799999938989999999999985959
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~ 160 (503)
T d3cw9a1 81 PALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFY 160 (503)
T ss_dssp EEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETTEECCCSCCCCCCCCCTTSEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 99758999999999999725875799513067777876531444322100011110012247754453211133344311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (503)
T d3cw9a1 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLV 240 (503)
T ss_dssp ECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 22444343443112211233322202323222222222234576422222232222221223432346656857754311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~ 320 (503)
T d3cw9a1 241 QQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT 320 (503)
T ss_dssp HHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSS
T ss_pred HHCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 11000001122222222124443334344665147997436544453222222222211235445421120121012234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~~~GR 400 (503)
T d3cw9a1 321 GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGR 400 (503)
T ss_dssp SSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCEEEECCC
T ss_conf 44444335542125653024686368985220011112222222357734348773188511135453024885885787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~ 480 (503)
T d3cw9a1 401 VDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480 (503)
T ss_dssp SSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSEEE
T ss_pred CCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 67869989999988999999981998157999978878898189999996789999999999999866899777833899
Q ss_pred ----------------------C
Q ss_conf ----------------------9
Q 000235 1717 ----------------------A 1717 (1815)
Q Consensus 1717 ----------------------~ 1717 (1815)
.
T Consensus 481 ~v~~~P~t~~GKi~R~~L~~~~~ 503 (503)
T d3cw9a1 481 ILDQLPKNALNKVLRRQLVQQVS 503 (503)
T ss_dssp ECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EECCCCCCCCCCCCHHHHHHHCC
T ss_conf 98988869886822999999658
|
| >d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Baltic cod (Gadus callarias) [TaxId: 8053]
Probab=100.00 E-value=0 Score=38084.11 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~p~~~~~~~~~~~~~n~I~G~~v~~~~g~~~~~V~nP~tge~i~~v~~a~~~dV~~AV~aA~~A~~~W~~~s~~ 80 (503)
T d1a4sa_ 1 AQLVDSMPSASTGSVVVTDDLNYWGGRRIKSKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLKWSKMAGI 80 (503)
T ss_dssp CHHHHTGGGCCTTTCCCCSCCEEETTEEECCCTTCCCEEEECTTTCCEEEEECCCCHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred CCHHHCCCCCCCCCEEECCCCEEECCEEECCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 94122387666775134687748989894799997054012699998889994999999999999999999998409999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 eR~~iL~~~a~~L~~~~eela~~~~~etGkp~~ea~~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~ 160 (503)
T d1a4sa_ 81 ERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPTLSGQHIQLPGGAFAYTRREPLGVCA 160 (503)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHGGGCCEEEEECGGGCEEEEEEEECSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 99999999999999759999999977403101023344455542010123444433222323699853210133301221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~I~p~NfP~~~~~~~~~~ALaaGN~VV~Kps~~~p~~~~~l~~~~~~aglP~gv~~~v~g~~e~g~~L~~~~~v~~V~fT 240 (503)
T d1a4sa_ 161 GILAWNYPFMIAAWKCAPALACGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGAETGSLLCHHPNVAKVSFT 240 (503)
T ss_dssp EECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEE
T ss_conf 15677875999999999999759879998898885999999999998395978699914888999999729996889976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 GS~~~G~~i~~~aa~~~~~~~lElGG~~p~iV~~dAdl~~a~~~i~~~~~~~~GQ~C~a~~ri~v~~~~~~~~~~~l~~~ 320 (503)
T d1a4sa_ 241 GSVPTGKKVMEMSAKTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKR 320 (503)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCHHHHHHHHHCCHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 97999999999764148957997787486799898458887455330332038985556740178731022578999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~g~~~~~~~~~gp~i~~~~~~~~~~~~~~a~~~Ga~v~~gg~~~~~~~~~~~~G~~~~Ptvl~~~~~~~~~~~~E 400 (503)
T d1a4sa_ 321 TKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEE 400 (503)
T ss_dssp HHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSC
T ss_pred HHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCEEEECCCCCCHHHHCC
T ss_conf 43076445436444445115999999999999999976999997883067788666785277088995799987888554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~FgPvl~v~~~~~~~eai~~an~~~~gL~~~i~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~ 480 (503)
T d1a4sa_ 401 IFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGRENGQ 480 (503)
T ss_dssp CCSSEEEEEEECCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESCCCCCCTTSCBCCSGGGEECCBSTT
T ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 45764799971999999999867999986999918999999999868862799918988888988467041707841289
Q ss_pred ----------------------C
Q ss_conf ----------------------9
Q 000235 1717 ----------------------A 1717 (1815)
Q Consensus 1717 ----------------------~ 1717 (1815)
=
T Consensus 481 ~~l~~~t~~k~v~~~~~~~~~~f 503 (503)
T d1a4sa_ 481 ATVDYYSQLKTVIVEMGDVDSLF 503 (503)
T ss_dssp GGGGGSEEEEEEEECCSCCCCCC
T ss_pred HHHHHHHCEEEEEECCCCCCCCC
T ss_conf 99999608089999577778898
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=38081.73 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (503)
T d1wa5b_ 1 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 80 (503)
T ss_dssp CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHH
T ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98167768753379998699998777888998389999999853388866665563100001210356777788899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~ 160 (503)
T d1wa5b_ 81 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD 160 (503)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99986499999999999999999740788439999987984999998717999999999999999997498887799996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~ 240 (503)
T d1wa5b_ 161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240 (503)
T ss_dssp TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 78747899985599715899999999998541189999887413556301204568889999999999998468742047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~ 320 (503)
T d1wa5b_ 241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 320 (503)
T ss_dssp HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999987235638999999999875322771111001122331110110257863644567777777877888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~ 400 (503)
T d1wa5b_ 321 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 400 (503)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 87876312340999999963997888999987788886146988899997146523677602687368999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~ 480 (503)
T d1wa5b_ 401 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ 480 (503)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG
T ss_pred HCCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHC
T ss_conf 36535489999999897699999986599889999999999999998887756530230189999998877999999876
Q ss_pred ----------------------C
Q ss_conf ----------------------9
Q 000235 1717 ----------------------A 1717 (1815)
Q Consensus 1717 ----------------------~ 1717 (1815)
-
T Consensus 481 ~~~~~i~~~A~~il~~~f~~~~~ 503 (503)
T d1wa5b_ 481 NENDKIYEKAYKIIETYFGEEED 503 (503)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCC-
T ss_pred CCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99899999999999987587689
|
| >d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Norwalk virus [TaxId: 11983]
Probab=100.00 E-value=0 Score=38002.25 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~g~p~~~~~~~~~~~tkTk~~~s~~~~~~p~~~ePA~Ls~~DpRl~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 80 (502)
T d1sh0a_ 1 GTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEA 80 (502)
T ss_dssp CEETTEEEEEECCSCCCCCCEEEEESSSSCCCTTCCEECCCCTTCTTSSSCCCHHHHHHHHHHHHHSCCCCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 97267640378878988888402436887779888648989998999999998899999743464678888875999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 a~~~~~~~~~~~l~~~~~i~g~~~~~~l~~~TS~G~Py~~~K~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~l 160 (502)
T d1sh0a_ 81 AKKTIINVLEQTIDPPDKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPVYTGAL 160 (502)
T ss_dssp HHHHHHHHHHTTCCCCCCCCHHHHHHHSCTTSBCCTTTCCBGGGGBCSSSBCSHHHHHHHHHHHHHHTTCCCCCEEEEEE
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 99999987534577101335868975378567999987880533137664553578999999999974999882222066
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 KDElrp~eKv~~~gKTR~f~~~p~~~~i~~R~~f~~f~~~~~~~~~~~~~~VGinp~~~w~~l~~~l~~~~~~~~~DyS~ 240 (502)
T d1sh0a_ 161 KDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHCVTLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSR 240 (502)
T ss_dssp CCCEECTHHHHSSCCCCEEEECCHHHHHHHHHHHHHHHHHHHHTTTTSSBCTTCCHHHHHHHHHHHHHTSSEEECCEESS
T ss_pred CCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHCCCEEEEEECCC
T ss_conf 47415778755699825999798899999999999999999965788873112066760899999751489089635447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 FD~sl~~~v~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~v~gGlPSG~p~Tsi~NSi~N~i~~~~a~~~~~ 320 (502)
T d1sh0a_ 241 WDSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVT 320 (502)
T ss_dssp HHHHCCHHHHHHHHHHHHHTSSSHHHHHHHHHHHHSCEEEECSSEEEEECSSCCTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 66778999999999999998469869999999854872898699899994788788834265222999999999999854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~f~~~~~~~~YGDD~iis~~~~~~~~~i~~~~~~~G~~~T~~dK~~~~~~~~~~l~~~~FLKR~f~~~~~~~~a~ 400 (502)
T d1sh0a_ 321 NLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGK 400 (502)
T ss_dssp TCCHHHHHHTEEEEEETTEEEEEESSCCCHHHHHHHHHHTTCCEECSSCCSSCCCCBSCCTTCEETTEEEEEETTEEEEE
T ss_pred CCCCCCHHEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHCCEECHHHHCCCCCCCCCCCCCCCCCCCCCEECCCEEECC
T ss_conf 78833011179999747882797666653999999999819874525406677657786666712374578793998566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 Ld~~sI~~~l~W~r~~~~~~~~e~~~~~~~~~~~l~sal~ea~~hg~e~y~~~~~~i~~~~~~~G~~~~~p~~~~~~~wl 480 (502)
T d1sh0a_ 401 LEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM 480 (502)
T ss_dssp ECHHHHHHHHHEEEEEEESCTTSBCCCCTHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHH
T ss_pred CCHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99899998466777898544321236278999999999999996889999999999999988638777787189999999
Q ss_pred ---------------------C
Q ss_conf ---------------------9
Q 000235 1717 ---------------------A 1717 (1815)
Q Consensus 1717 ---------------------~ 1717 (1815)
-
T Consensus 481 r~~~~~~~e~~~~~~~~~~~~~ 502 (502)
T d1sh0a_ 481 RFSDLSTWEGDRNLAPSFVNED 502 (502)
T ss_dssp HHCCCTTCCSCGGGSCCCCSCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCC
T ss_conf 7426765467520046667898
|
| >d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Cytochrome c oxidase subunit I-like superfamily: Cytochrome c oxidase subunit I-like family: Cytochrome c oxidase subunit I-like domain: Cytochrome O ubiquinol oxidase, subunit I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=37933.95 Aligned_cols=1 Identities=0% Similarity=-1.358 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 vdHK~Ig~~Yl~~~~~~~~iG~~~alliR~el~~~~~~~~~~~~~~~Y~~~~T~HG~~Mif~~~~p~~~Gf~n~lvPl~l 80 (501)
T d1ffta_ 1 VDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQI 80 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSSCTTCCCSTHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98799999999999999999999999999998617888767788677888559999999999999999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Ga~dmafPrln~~sfWl~~~~~~l~~~s~~~~~~~~~gwt~y~pl~~~~~~~~~~~~l~i~gl~l~gissil~~in~i~T 160 (501)
T d1ffta_ 81 GARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVT 160 (501)
T ss_dssp CCSSCSSHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSTTTTCTTTSSCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99731107589999999999999865012344655432322444345678996358999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 i~~~R~~gm~~~~~PLf~w~~~~t~il~~la~pvla~~~~~llld~~~g~~ff~~~~ggdp~l~q~LFWffgHP~VYi~i 240 (501)
T d1ffta_ 161 ILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILI 240 (501)
T ss_dssp HHHCSCTTCCGGGCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCSSCTTTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCHHHCCCHHHEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCCEEEEEH
T ss_conf 99853799972105542013224444376688899988878630100487766677787510202201204784123315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 lPa~g~~~~iip~~~~~~lf~~~~~~~a~~~i~~ls~~vw~HH~~~~g~~~~~~~~~~~~T~~iaiPs~~~~f~w~~tl~ 320 (501)
T d1ffta_ 241 LPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMY 320 (501)
T ss_dssp HHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHTTSSCGGGGTTTTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 38999999998985399653405789999988872101000320145667046677889999999999999999988835
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~g~~~~~~~~l~~l~fi~~F~~GG~tGi~~a~~~~d~~~H~T~~VvgHFH~~~~~~~v~~~~~~~y~~~P~l~Gr~l~~~ 400 (501)
T d1ffta_ 321 QGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNET 400 (501)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTTTBHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 87313360589999999999987554553202578888503212301321355307999999999999988646122469
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 l~~~~f~~~~iG~~~~f~pm~~~G~~G~pRR~~~y~~~~~~~~~~~~~~g~~i~~~~~~~f~~~~~~s~~~~~~~~~~~~ 480 (501)
T d1ffta_ 401 WGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTG 480 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTCSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999999999997748988776778874489999999999999999999999999999995204787878
Q ss_pred --------------------C
Q ss_conf --------------------9
Q 000235 1717 --------------------A 1717 (1815)
Q Consensus 1717 --------------------~ 1717 (1815)
-
T Consensus 481 npw~~~tlEW~~~sppp~~nf 501 (501)
T d1ffta_ 481 DPWGGRTLEWATSSPPPFYNF 501 (501)
T ss_dssp SCTTCCCTTTTSCSSCCTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCC
T ss_conf 999997854698999998889
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=100.00 E-value=0 Score=37927.81 Aligned_cols=1 Identities=0% Similarity=-0.760 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~~l~~~L~~~gQ~HLl~~~~~l~~~ek~~L~~qL~~id~~~l~~~~~~a~~~~~~~~~~~~~~~~~~p~p~~~~~~~ 80 (501)
T d1jv1a_ 1 MNINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGSA 80 (501)
T ss_dssp CCHHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTCCHHHHHHHHHHHHHCC-----------CCBCCCGGGEEET
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 98899999999839398885564289999999999998559999999999999876532555675333567984650465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~G~~~i~~gkvavvllaGG~GTRLG~~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~i 160 (501)
T d1jv1a_ 81 TRDQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCII 160 (501)
T ss_dssp TTTGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 66867789999861898854988999978985666788889630142567887499999999999999999853789985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 Pl~IMtS~~T~~~t~~~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~ 240 (501)
T d1jv1a_ 161 PWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDME 240 (501)
T ss_dssp CEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf 49998884376999999996643489867569998357605878987135888861156799558999999788399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~Gi~yi~v~~vDN~l~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~e~~G~l~~~dg~~~vvEysel~~~~~~~~~~~g~ 320 (501)
T d1jv1a_ 241 QRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGR 320 (501)
T ss_dssp HTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSS
T ss_pred HCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCEEEEEEECCCCHHHHHHCCCCCC
T ss_conf 77997999995687532444888999998444620479987678986313699889967998713588778750167773
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~f~~~Ni~~~~fsl~fl~~~~~~~~~~l~~hva~Kki~~~d~~~~~~~p~~~n~iklE~fifD~~~~~~~~~~~~V~R~ 400 (501)
T d1jv1a_ 321 LLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLRE 400 (501)
T ss_dssp BSSCEEEEEEEEEEHHHHHHHHHTTGGGCCCEEEEECCCEECTTSCEECCSSCCEEEEECCGGGGGGGCSSEEEEEECHH
T ss_pred CCCCCCCEEHEEEEHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHH
T ss_conf 12553550021357999999987134477736855654761777876368998623379999999985164599997624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~eFaPvKN~~~~~~~dsp~ta~~~l~~~~~~wl~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~EIsp~~sy~GEgL~~~ 480 (501)
T d1jv1a_ 401 DEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESY 480 (501)
T ss_dssp HHCCBCCSCTTSSSSSSHHHHHHHHHHHHHHHHHHTTCEEBCTTCCBCCSSCCCCSTTCCCCCEEECTTTCSSSCSCHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 33132457987778889899999999876899998698373343212466654212468870499788645546678886
Q ss_pred --------------------C
Q ss_conf --------------------9
Q 000235 1717 --------------------A 1717 (1815)
Q Consensus 1717 --------------------~ 1717 (1815)
-
T Consensus 481 ~~~~~~~~p~~l~~~~~~~~~ 501 (501)
T d1jv1a_ 481 VADKEFHAPLIIDENGVHELV 501 (501)
T ss_dssp HTTCEECSSEEEETTEEEECC
T ss_pred HCCCEECCCEEECCCCHHHCC
T ss_conf 079775475588675501029
|
| >d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: beta-Amylase species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=0 Score=37857.31 Aligned_cols=1 Identities=0% Similarity=-0.627 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~VpVyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 80 (500)
T d1b1ya_ 1 MKGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKL 80 (500)
T ss_dssp CGGGCCEEEEECCTTSSCTTSCCCTHHHHHHHHHHHHHTTCCEEEEEEETTTGGGGSTTCCCCHHHHHHHHHHHHHTCEE
T ss_pred CCCCCEEEEEEEECCEECCCCEECCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 97773059997354056579806688999999999998599789996442453047898558189999999999859837
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 q~vmSFHqCGGNVGD~v~IPLP~WV~~~~~~dpDi~ftDr~G~rn~E~LSlg~D~~pvl~GRTplq~Y~DFm~SFr~~F~ 160 (500)
T d1b1ya_ 81 QAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMK 160 (500)
T ss_dssp EEEEECSCBSSSTTCCSCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCCTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89986031688788763047867898754018873778788886756131001555213799689999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~I~eI~VGlGP~GELRYPSYp~~~Gw~yPGiGEFQCYDky~~~~Lk~aA~~~G~~~Wg~P~dag~yn~~P~~t~ 240 (500)
T d1b1ya_ 161 DFLDAGVIVDIEVGLGPAGELRYPSYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDAGQYNDTPERTQ 240 (500)
T ss_dssp HHHHHTCEEEEEECCSGGGBSSCCCSCGGGTCCTTCCCCCCCCSHHHHHHHHHHHHHTTCTTCCSCTTCCCTTCCGGGST
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86059857899967666767538988545698588864131672999999999998739976669898554578988787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKV~GIHWwY~t~SHaAElTAGyYNt~~rDGY~ 320 (500)
T d1b1ya_ 241 FFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVPSHAAELTAGYYNLHDRDGYR 320 (500)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEEECCCCTTCSSSSCHHHHHHTCCCCSSSCTTH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHH
T ss_conf 61469974430007899999999999999999998985389882699993631336899885687634336788877579
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~Ia~m~~rh~~~l~FTClEM~d~e~~~~a~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~d~~~y~qI~~n~~~~~~~~~ 400 (500)
T d1b1ya_ 321 TIARMLKRHRASINFTCAEMRDSEQPPDAMSAPEELVQQVLSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQS 400 (500)
T ss_dssp HHHHHHTTTTCEEEECCTTCCGGGSCTTTTCCHHHHHHHHHHHHHHTTCCEEECCSSCCCSHHHHHHHHHHHSTTCCCTT
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99999997497699970354567898535679899999999999981993541005111382189999973543456556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (500)
T d1b1ya_ 401 GPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMHANLPRDPYVDPMAPLPRSGPEISIEMILQAAQPKIQPFPFQEHT 480 (500)
T ss_dssp SCCSSCCSEEEESCCCTTTSSHHHHHHHHHHHHHHTTTCCCCSSSSCCCCCCCCCCCCCHHHHGGGSSSCCCCCCCCSSC
T ss_pred CCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 77767600478863885666943289999999982466565866787775445687575899987338878898988767
Q ss_pred -------------------C
Q ss_conf -------------------9
Q 000235 1717 -------------------A 1717 (1815)
Q Consensus 1717 -------------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~ 500 (500)
T d1b1ya_ 481 DLPVGPTGGMGGQAEGPTCG 500 (500)
T ss_dssp SSCCCSSCCSSCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCC
T ss_conf 76555678877631489899
|
| >d1eswa_ c.1.8.1 (A:) Amylomaltase MalQ {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=0 Score=37851.22 Aligned_cols=1 Identities=0% Similarity=-1.192 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~R~~Gvllh~~SLp~~~GiGdfG~~a~~fid~l~~~G~~~wQiLPl~pt~~~~SPYs~~S~fAlNPlyIdle~L~e~ 80 (500)
T d1eswa_ 1 MELPRAFGLLLHPTSLPGPYGVGVLGREARDFLRFLKEAGGRYWQVLPLGPTGYGDSPYQSFSAFAGNPYLIDLRPLAER 80 (500)
T ss_dssp CCCCSEEEEECCGGGSCCSSSSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBCTTCCTTSBSCSSCCCGGGCCSHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHCCHHHCCHHHHHHC
T ss_conf 99886524676753269999886643899999999998699889977999999998895730401139777098863125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~l~~~~~~~~~~~VDY~~v~~~K~~~L~~af~~f~~~~~~~~~~~F~~F~~~~~~wL~dyAlF~ALk~~~~~~~W~~Wp 160 (500)
T d1eswa_ 81 GYVRLEDPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKASPEEREAFAAFREREAWWLEDYALFMALKGAHGGLPWNRWP 160 (500)
T ss_dssp TSCCCCCCCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCGGGSC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 44460005887034679999999999999999751102787789999999986458899899999999984899866784
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~r~~~~~~l~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~~saDvW~~~~lF~ld~~~~~ 240 (500)
T d1eswa_ 161 LPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEAEALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRP 240 (500)
T ss_dssp HHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEESSCCSSSHHHHHCGGGBCBCTTSCB
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHCCHHHHHHCCCCCC
T ss_conf 87641108999999998556788999999999999999999998559944664224666886888749887631325797
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl~~~~~~~~~lRIDH~~Gf~r~W~iP~g~~~a~~G~~v~~p 320 (500)
T d1eswa_ 241 TVVAGVPPDYFSETGQRWGNPLYRWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRWVKAP 320 (500)
T ss_dssp SEECEECCCSSCSSCEECCCCCBCHHHHHHTTTHHHHHHHHHHHHHCSEEEEETGGGGTEEEEEETTCSSSTTCEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 50028899987745566899987999998738399999999999754614257589988874031699656677005666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~l~~~l~~~~~~~~viaEDLG~vp~~v~~~l~~~gi~g~~V~~f~~~~~~~~~~~p~~~~~~~~~v~~~gTHD~~Tl~ 400 (500)
T d1eswa_ 321 GEKLFQKIQEVFGEVPVLAEDLGVITPEVEALRDRFGLPGMKVLQFAFDDGMENPFLPHNYPAHGRVVVYTGTHDNDTTL 400 (500)
T ss_dssp HHHHHHHHHHHHSSCCEEECCTTCCCHHHHHHHHHTTCCEEEEGGGSSSSCTTCTTSGGGSCTTCCEEEESCCTTSCCHH
T ss_pred HHHHHHHHHHHHCCCCEEHHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHH
T ss_conf 99999999998068834224332288789999997699886678861158989999865576311336761688873278
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 gw~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~s~l~i~~lqDll~Lg~~~r~N~PGt~~~nw~wR~~~~ 480 (500)
T d1eswa_ 401 GWYRTATPHEKAFMARYLADWGITFREEEEVPWALMHLGMKSVARLAVYPVQDVLALGSEARMNYPGRPSGNWAWRLLPG 480 (500)
T ss_dssp HHHHHSCHHHHHHHHHHHHHTTCCCSSGGGHHHHHHHHHHHSSCSEEEEEHHHHTTCCGGGCSCCTTCSSSTTCBCCCTT
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89876999999999999863388888620699999999975817888958998845687667839989998834458900
Q ss_pred -------------------C
Q ss_conf -------------------9
Q 000235 1717 -------------------A 1717 (1815)
Q Consensus 1717 -------------------~ 1717 (1815)
-
T Consensus 481 ~l~~~~~~rl~~l~~~~~R~ 500 (500)
T d1eswa_ 481 ELSPEHGARLRAMAEATERL 500 (500)
T ss_dssp CSCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 06989999999999985889
|
| >d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: CH domain-like superfamily: Calponin-homology domain, CH-domain family: Calponin-homology domain, CH-domain domain: Fimbrin (Plastin), actin-crosslinking domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=37847.82 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~qk~tft~WiN~~L~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~ 80 (500)
T d1pxya_ 1 SEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLN 80 (500)
T ss_dssp CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 92769999999984637553224888984878999850489999999997688666143157788669999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~k~~gi~lvnI~~~dIvdGn~~liLgLlW~ii~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~LL~W~n~~l~ 160 (500)
T d1pxya_ 81 SAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLK 160 (500)
T ss_dssp HHHHTTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSCC-----------------CCSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHCC
T ss_conf 99985987822674552257999999999999999988661002473100024577540101038989999999998365
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~v~nf~~d~~dG~~~~~Ll~~~~P~~~~~~~~~~~~~~~~~~~a~~~a~~lgip~~l~peDI~~~~~k~~l~~v 240 (500)
T d1pxya_ 161 KGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFV 240 (500)
T ss_dssp HTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCCSHHHHHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHH
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHH
T ss_conf 46898441037677046799999999878775672423759999999999999998498866889996289688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 a~lf~~~p~~~~~~~~~~~~~~~e~~~~~~~~ktf~~WiNs~~~~~~V~dL~~dl~DG~~L~~Lle~l~~~~~~~~~~~~ 320 (500)
T d1pxya_ 241 AQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASK 320 (500)
T ss_dssp HHHHHHCCCCC-------------CCHHHHHHHHHHHHHTTTTCSSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCC
T ss_conf 99997535555554102444310002200257899988744688987054877776049999999996698777221379
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~ki~N~~~al~~~~~~gi~l~~I~~~DI~dG~~k~iLgLlW~Li~~~~i~~~~~~~~~~~~~~~~~~~LL~W~ 400 (500)
T d1pxya_ 321 PPIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWA 400 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCC-----CCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 85220589998899999999973986578886776403433279999999899999999864002100134799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~I~nF~~~s~~dG~a~~~Li~~~~P~~id~~~~~~~~~~~~~~~N~~~a~~~a~~lGip~ll~peDv~~ 480 (500)
T d1pxya_ 401 NRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVE 480 (500)
T ss_dssp HHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSCCCSCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 99987428997147589898635199999998628886587664788971689999999999999839972179888799
Q ss_pred -------------------C
Q ss_conf -------------------9
Q 000235 1717 -------------------A 1717 (1815)
Q Consensus 1717 -------------------~ 1717 (1815)
+
T Consensus 481 ~deksv~tyvs~l~~~~l~~ 500 (500)
T d1pxya_ 481 VNQKMILILTASIMYWSLQR 500 (500)
T ss_dssp TCHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 87303599999998777419
|
| >d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=100.00 E-value=0 Score=37777.39 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~I~G~~~~sg~~~~v~~P~t~~~i~~v~~a~~~dv~~Av~~A~~a~~~~w~~~~~~~R~~i 80 (499)
T d1ky8a_ 1 AGLLEGVIKEKGGVPVYPSYLAGEWGGSGQEIEVKSPIDLATIAKVISPSREEVERTLDVLFKRGRWSARDMPGTERLAV 80 (499)
T ss_dssp CGGGTTTSEEETTEEEECEECSSSEECCSCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHTHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCCEECCEECCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCHHHHHCCCHHHHHHH
T ss_conf 90667999734899877887877587999938812799878899993899999999999998735302331999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 L~~~a~~l~~~~~~la~~~~~etGk~~~~a~~Ev~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~ 160 (499)
T d1ky8a_ 81 LRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVA 160 (499)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGGGGTTTCCEEEESTTSSTTTTEEEEEEEEECSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 99999999970999999999981998899865232021222110244555421000011135555652035530456311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~I~p~N~P~~~~~~~~~~ALaaGn~Vi~Kps~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~i~~v~ft 240 (499)
T d1ky8a_ 161 AITPFNYPLFDAVNKITYSFIYGNAVVVKPSISDPLPAAMAVKALLDAGFPPDAIALLNLPGKEAEKIVADDRVAAVSFT 240 (499)
T ss_dssp EECCSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCCCGGGGHHHHHCTTCCEEEEE
T ss_pred CCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf 34643333124431000332014333223431001234321122112455310110256773789998606625589741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Gs~~~g~~i~~~~~~~~~~lElgG~np~iV~~dAdl~~aa~~i~~~~~~~~GQ~C~a~~~v~V~~~v~d~f~~~l~~~~~ 320 (499)
T d1ky8a_ 241 GSTEVGERVVKVGGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGKLVEEVAKRLS 320 (499)
T ss_dssp SCHHHHHHHHHHHCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 23334047751353001688258878499968858455012555004115765442200132221059999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~l~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~eE~FGPvl~ 400 (499)
T d1ky8a_ 321 SLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPTYVQPTLVEAPADRVKDMVLYKREVFAPVAS 400 (499)
T ss_dssp TCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEECCHHHHTTSHHHHSCCCSSEEE
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 27667977755652665048789999999999997499776420233322123211222345798870232136686689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 v~~~~~~~eai~~~n~~~~gLt~sv~s~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~~PfGG~k~SG~G~~~g~~~~~~~ 480 (499)
T d1ky8a_ 401 AVEVKDLDQAIELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFREGIGYAVEAV 480 (499)
T ss_dssp EEEESSHHHHHHHHHTSSEESEEEEECCCHHHHHHHHHHCCSSEEEETSCCCCTTSSSCBCCEETTEESCBSTTTTHHHH
T ss_pred EEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99809999999998679999769999389999999998687739999699888877898454361768877779999996
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000235 1717 ------------------A 1717 (1815)
Q Consensus 1717 ------------------~ 1717 (1815)
.
T Consensus 481 ~~~k~i~~~~~~~~~~~y~ 499 (499)
T d1ky8a_ 481 TAYKTIVFNYKGKGVWKYE 499 (499)
T ss_dssp EEEEEEEEECTTSSSCSCC
T ss_pred HCEEEEEECCCCCCCCCCC
T ss_conf 0788999937988889789
|
| >d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Nickel-binding periplasmic protein NikA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=37773.05 Aligned_cols=1 Identities=100% Similarity=2.397 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~~i~~~~~~~~~~ldP~~~~~~~~~~~~~vye~L~~~d~~g~~~p~LA~sw~~s~D~~~~tf~Lr~g~~wsDG~plTA~ 80 (499)
T d1zlqa1 1 PDEITTAWPVNVGPLNPHLYTPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFDAE 80 (499)
T ss_dssp CCEEEEEESSCCCSCCTTCCTTSCHHHHHHHCCCSEEECTTSCEEESSEEEEEECTTSCEEEEEECSSCBCTTSCBCCHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCHHHEECCCCCEEEHHEEEEEECCCCCEEEEEECCCCEECCCCCCCHH
T ss_conf 98799935899998886814872899998774613159938949611274775989998899996995992997894499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 DV~~s~~~~~~~~~~~~~~~~~~~~~~v~~~d~~tv~~~l~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~igt 160 (499)
T d1zlqa1 81 AAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRPFRFIAPSQFKNHETMNGIKAPIGT 160 (499)
T ss_dssp HHHHHHHHHHTTGGGGTTSTHHHHEEEEEESSSSEEEEEESSCCTTHHHHHTSSSSSCCCCGGGEETTEEEEEESSCCCS
T ss_pred HHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 99999999867555674556414655179974022332356788705555412100223450232111110134664017
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 GPy~~~~~~~~~~i~l~~n~~y~~~~p~~d~I~~~~~~d~~~~~~~l~~Ge~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (499)
T d1zlqa1 161 GPWILQESKLNQYDVFVRNENYWGEKPAIKKITFNVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQL 240 (499)
T ss_dssp SSEEEEEEETTTEEEEEECTTCSSCCCSCCEEEEEECCCHHHHHHHHHTTSCSEEEESTTSSCHHHHHHHHHCTTSEEEE
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCHHHEEEECCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 86203413332222222565445678866669999840410344321120101341465401234556653167652113
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~N~~~~~~~d~~vR~Al~~aidr~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~A~~lL~~a 320 (499)
T d1zlqa1 241 SQPIETVMLALNTAKAPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPSQYDPQKAKALLEKA 320 (499)
T ss_dssp EEEEEEEEEEECTTSTTTTSHHHHHHHHHHCCHHHHHHHHSTTCSEECCSSSCTTSTTCCCCCCCCCCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 54445431135677632126888999997664010010010001211235443345543566674322146665554555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 g~~~~~~~~~~~~~g~~~~i~i~~~~~~~~~~~~a~~i~~~l~~~Gi~v~v~~~~~~~~~~~~~~g~~d~~~~~~~~~~~ 400 (499)
T d1zlqa1 321 GWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGEEESSIYARQRDGRFGMIFHRTWGAPY 400 (499)
T ss_dssp TCBCCTTCSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHTCCSEEEEECCCTTT
T ss_pred HHHCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 43235677642111223210010022342027789998754004552899995031466677643871168850457899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 dp~~~l~~~~~~~~~~~~~n~~~~~~~~~d~ll~~~~~~~D~~~r~~~~~~~~~~l~e~~~~iPl~~~~~~~~~~~~v~g 480 (499)
T d1zlqa1 401 DPHAFLSSMRVPSHADFQAQQGLADKPLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGN 480 (499)
T ss_dssp TTHHHHHGGGCTTSHHHHHHTTCTTHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEECGGGCC
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCC
T ss_conf 86899998606778887654376798999999999860599999999999999999972999999974479998486137
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000235 1717 ------------------A 1717 (1815)
Q Consensus 1717 ------------------~ 1717 (1815)
-
T Consensus 481 ~~~~p~~~~~~~~~i~~~k 499 (499)
T d1zlqa1 481 IPYAPIATEIPFEQIKPVK 499 (499)
T ss_dssp CCCCSSTTCCCGGGCCSCC
T ss_pred EEECCCCCCCCHHHEEECC
T ss_conf 3788854641233359779
|
| >d1e4mm_ c.1.8.4 (M:) Plant beta-glucosidase (myrosinase) {White mustard (Sinapis alba) [TaxId: 3728]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: Plant beta-glucosidase (myrosinase) species: White mustard (Sinapis alba) [TaxId: 3728]
Probab=100.00 E-value=0 Score=37772.18 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~FP~~FlwG~atsa~Q~EG~~gkg~s~wd~~~~~~~~~~~~~~~~~~~a~d~y~~y~eD 80 (499)
T d1e4mm_ 1 EITCQENLPFTCGNTDALNSSSFSSDFIFGVASSAYQIEGTIGRGLNIWDGFTHRYPNKSGPDHGNGDTTCDSFSYWQKD 80 (499)
T ss_dssp CCCCCCSSSCCTTCTTTSCGGGSCTTCEEEEECCHHHHSCSTTSCCBHHHHHHHHSHHHHCTTCCCSSSTTCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 95512489988855254453579999857336618773889999951876776506876687899987424437778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 i~l~~~lG~~~yRfSI~WsRI~P~g~~~~~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~HfdlP~~l~~~~GGW~~~~~~~ 160 (499)
T d1e4mm_ 81 IDVLDELNATGYRFSIAWSRIIPRGKRSRGVNEKGIDYYHGLISGLIKKGITPFVTLFHWDLPQTLQDEYEGFLDPQIID 160 (499)
T ss_dssp HHHHHHHTCSEEEEECCHHHHCTTSSGGGCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHHHHCGGGSTHHHH
T ss_pred HHHHHHHCCCEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHH
T ss_conf 99999819998980577998374888778889999999999999999719963289844751888987505546789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~F~~YA~~v~~~fgd~Vk~W~T~NEP~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAha~a~~~~~ 240 (499)
T d1e4mm_ 161 DFKDYADLCFEEFGDSVKYWLTINQLYSVPTRGYGSALDAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYR 240 (499)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEESCTTHHHHHHHTSCSSTTCCCCTTTCTTCSSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988614603014772672478512655131357666755561121034167899999999998999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~g~ig~~~~~~~~~p~~~~~~~~~~aa~~~~~~~~~~~~d~~~~g~Yp~~~~~~~~~~l~~~~~~e~~l~~~~~ 320 (499)
T d1e4mm_ 241 KNYTHQGGKIGPTMITRWFLPYNDTDRHSIAATERMKEFFLGWFMGPLTNGTYPQIMIDTVGERLPSFSPEESNLVKGSY 320 (499)
T ss_dssp HHSGGGCCEEECEEEEEEEEESSTTCHHHHHHHHHHHHHHTHHHHHHHHHSSCCHHHHHHHGGGSCCCCHHHHHHHTTCC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCC
T ss_conf 86011367645434652110699730669999999998653100120127767616788888757756577888751874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~~Y~~ 400 (499)
T d1e4mm_ 321 DFLGLNYYFTQYAQPSPNPVNSTNHTAMMDAGAKLTYINASGHYIGPLFEKDKADSTDNIYYYPKGIYSVMDYFKNKYYN 400 (499)
T ss_dssp SSEEEEEEEEEEEEECCCCTTSTTCCGGGGGCEEEESBCTTSCBCSSEEECCSSCGGGCEECCTHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCC
T ss_conf 71035444426885378866666765445667656643777761476566787768788578879999999999998199
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ppI~ITENG~a~~d~~~~~g~i~D~~Ri~Yl~~hL~~~~~Ai~~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~ 480 (499)
T d1e4mm_ 401 PLIYVTENGISTPGDENRNQSMLDYTRIDYLCSHLCFLNKVIKEKDVNVKGYLAWALGDNYEFNKGFTVRFGLSYIDWNN 480 (499)
T ss_dssp CCEEEEECCCCEETTSCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECSBCCCBTTTBTSEECCSEEEETTE
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCHHHCCCCCCCEEEEECCC
T ss_conf 75899789888889878788536888999999999999999996899978861136016528222356767429981899
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000235 1717 ------------------A 1717 (1815)
Q Consensus 1717 ------------------~ 1717 (1815)
+
T Consensus 481 ~~~R~~K~S~~~y~~iIa~ 499 (499)
T d1e4mm_ 481 VTDRDLKKSGQWYQSFISP 499 (499)
T ss_dssp EEEEEECHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHCCC
T ss_conf 9875405699999986399
|
| >d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Di-heme elbow motif domain: Hydroxylamine oxidoreductase, HAO species: Nitrosomonas europaea [TaxId: 915]
Probab=100.00 E-value=0 Score=37771.95 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~pp~~~~~~~~~keCi 80 (499)
T d1fgja_ 1 DISTVPDETYDALKLDRGKATPKETYEALVKRYKDPAHGAGKGTMGDYWEPIAISIYMDPNTFYKPPVSPKEVAERKDCV 80 (499)
T ss_dssp CCTTSCHHHHHHHTCCTTTCCHHHHHHHHHHHHHCGGGTCSSCTTGGGCCCCTTHHHHSHHHHCCCCCSSCCEECHHHHH
T ss_pred CCCCCCHHHHHCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHCCCCHH
T ss_conf 92226578873136786678726654322111457344788765888555572220137765568986854552838336
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~CH~~~~Pgiv~dw~~S~Ha~~~~~~~~~c~~ch~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~C~~CH~~~~~~~~~~~ 160 (499)
T d1fgja_ 81 ECHSDETPVWVRAWKRSTHANLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDKADH 160 (499)
T ss_dssp HHHHHHSHHHHHHHHTSTTTCHHHHHTCCTTSGGGHHHHHHHHHHHHHHHTTSSCTTCCCCCCCHHHHHTCTTCCSCEEH
T ss_pred HHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 76678887512144338786666767777665555442332222355444566665557688971675688553455553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gC~~CH~~~~~C~ 240 (499)
T d1fgja_ 161 TKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAGRPSHALDYTANIETTVWATMPQREVAEGCTMCHTNQNKCD 240 (499)
T ss_dssp HHHCCCCCHHHHHTTCHHHHHHHHTHHHHCCCTTCSSCTTCSSSTTHHHHHHTCHHHHHCSCHHHHHHHHTTSCTTTCST
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23203554456776522132014466777555667655777510002567765444567665532443333433456555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~CHtrH~fs~~~ar~p~aC~~CH~g~dh~~~e~y~~SkHG~~~~~~~~~~~~~~~~~~~~~~~~~~apTCatCHm~~~g~ 320 (499)
T d1fgja_ 241 NCHTRHEFSAAESRKPEACATCHSGVDHNNWEAYTMSKHGKLAEMNRDKWNWEVRLKDAFSKGGQNAPTCAACHMEYEGE 320 (499)
T ss_dssp TTSCTTTCCHHHHHSGGGTTTTSCSTTCCHHHHHHHSHHHHHHHHHTTTSCTTSCHHHHTTTSCCCSCCHHHHHSBSSSC
T ss_pred CCCCCCCCCHHHCCCCHHHHHCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
T ss_conf 55565653232136850332124667662055413455762432155533456775423366788788602028978788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~tH~v~~~~~w~~~p~~~~~~~~~~~~~~~~r~~~m~~vC~~CHs~~~a~~~~~~~d~~~~~~~~~~~~a~~~~~~l~~~ 400 (499)
T d1fgja_ 321 YTHNITRKTRWANYPFVPGIAENITSDWSEARLDSWVLTCTQCHSERFARSYLDLMDKGTLEGLAKYQEANAIVHKMYED 400 (499)
T ss_dssp BCSCCCTTCSSCSCTTSTTTGGGGGSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87766145654546677762012688607766665541444314627899999998889999999999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~~~g~~~~~p~d~~~~~g~~~~~~~~~~ 480 (499)
T d1fgja_ 401 GTLTGQKTNRPNPPEPEKPGFGIFTQLFWSKGNNPASLELKVLEMGENNLAKMHVGLAHVNPGGWTYTEGWGPMNRAYVE 480 (499)
T ss_dssp TCSTTSSSSCCCCCTTCCCCSSCGGGGTCCBTTBSCHHHHHHHHHHHTHHHHHHHHHHTTCGGGTSSSSTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHCCHHHHHHHHHH
T ss_conf 88677766788886310111110000000124560189999999999876344540231075542234239999999999
Q ss_pred ------------------C
Q ss_conf ------------------9
Q 000235 1717 ------------------A 1717 (1815)
Q Consensus 1717 ------------------~ 1717 (1815)
.
T Consensus 481 i~~~a~~~~~~~~~~~~~~ 499 (499)
T d1fgja_ 481 IQDEYTKMQELSALQARVN 499 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999997774229
|
| >d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: beta-Amylase species: Sweet potato (Ipomoea batatas) [TaxId: 4120]
Probab=100.00 E-value=0 Score=37703.77 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~g~~~~~~yVpVyVMLPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~P~~YdWsgY~~l~~mv 80 (498)
T d1fa2a_ 1 APIPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLV 80 (498)
T ss_dssp CCCTTCCCGGGCCEEEEECCTTSSCSSSCCCCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEECCEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99888653568620899714323557882578999999999999859868999645357504789846838999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 r~~GLKlq~vmSFHqCGGNVGD~v~IPLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSl~~D~~pvl~GRTplq~Y~DFm~ 160 (498)
T d1fa2a_ 81 KKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFME 160 (498)
T ss_dssp HHTTCEEEEEEECSCBCCCTTCCCCBCSCHHHHHHTTTCGGGEEECTTCCEEEEEECGGGTTCEEETTEEHHHHHHHHHH
T ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 98498268998622158877875314786899964213888067757787365503114156432479978999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 SFr~~F~~~l~~g~I~eI~VGlGP~GELRYPSYp~~~GW~fPGiGEFQCYDky~~~~lk~aA~~~G~~~Wg~~~~dag~y 240 (498)
T d1fa2a_ 161 SFRDNMADFLKAGDIVDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGTY 240 (498)
T ss_dssp HHHHHSHHHHHHTCEEEEEECCSGGGBSSCCCSCGGGTCCTTCCCCCCCCSHHHHHHHHHHHHTTTCTTCCCCCGGGCCT
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999997614780589995666575764888854568868986413057499999999999982785457898777757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 n~~P~~t~FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYN 320 (498)
T d1fa2a_ 241 NDTPDKTEFFRPNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYN 320 (498)
T ss_dssp TCCGGGCSSSSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSBCEEEEEECCCCTTTTSTTCHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 89997667626798723210348999999999999999999999962898845999955235678998866876343367
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 t~~rdGY~~Ia~m~~rh~~~l~FTC~EM~d~e~~~~~~s~PE~Lv~QV~~aa~~~Gv~~aGENAL~~~d~~~y~qi~~~~ 400 (498)
T d1fa2a_ 321 VAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKL 400 (498)
T ss_dssp BTTBCSSHHHHHHHHHTTCEEEESCCSCCGGGSCGGGTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHCCHHHHHHHHHHH
T ss_conf 88877589999999873976999604646567985357898999999999999829945400232201706899999864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~Mh~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (498)
T d1fa2a_ 401 RPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADLDPSPNAISPAVLERSNSAITIDELMEATKGSRP 480 (498)
T ss_dssp STTCCCTTSSCSSCCSEEEESCCCHHHHSHHHHHHHHHHHHHHTTTCCCCTTTCSSCCCBCCCCCCCCSGGGGGGSCCCC
T ss_pred HHCCCCCCCCCCCCCCEEEEECCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 33037777887666324677358866659440899999999853666888555665522246887888999861488899
Q ss_pred -----------------C
Q ss_conf -----------------9
Q 000235 1717 -----------------A 1717 (1815)
Q Consensus 1717 -----------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~~~~~~~~~~~ 498 (498)
T d1fa2a_ 481 FPWYDVTDMPVDGSNPFD 498 (498)
T ss_dssp CCCCSSCSSCTTCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 898876776568888999
|
| >d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId: 1270]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Micrococcus lysodeikticus [TaxId: 1270]
Probab=100.00 E-value=0 Score=37700.84 Aligned_cols=1 Identities=0% Similarity=-0.228 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~~~hf~reripeR~vHAKG~ga~G~F~v~~d~s~~t~a~l 80 (498)
T d1gwea_ 1 TTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGSGAFGEFEVTEDVSKYTKALV 80 (498)
T ss_dssp CCTTCCSCBCTTSSBCSCSSCCCBSTTTSCBCTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 99888776368987636876442147889615677899999863044457531145772536999998876167552133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 f~~Gk~~pV~vRFSt~~G~~~s~D~~rd~RG~AiKf~t~eG~~DlV~nn~PVFfirdp~~F~~fi~a~k~~p~t~~~d~~ 160 (498)
T d1gwea_ 81 FQPGTKTETLLRFSTVAGELGSPDTWRDVRGFALRFYTEEGNYDLVGNNTPIFFLRDPMKFTHFIRSQKRLPDSGLRDAT 160 (498)
T ss_dssp GSTTCEEEEEEEEECSSSCTTSCTTSSCCCEEEEEEEETTEEEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCCBCHH
T ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 16997223799832588999987557787864899874899852776367777767989989999971568766888726
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~df~~~~Pes~~~~~~l~s~r~~P~Sy~~~~~~g~htf~~vn~~G~~~~vK~~~~P~~G~~~l~~eEa~~l~~~dpd~ 240 (498)
T d1gwea_ 161 MQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFISQQGVHNLSNDEATKIAGENADF 240 (498)
T ss_dssp HHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTH
T ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHCCCCCHH
T ss_conf 79999970977899999973567898875666643210388781479889999878808876679999999745789236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~~DL~~~i~~g~~~~w~L~vQl~~~~d~~~~~~d~~D~TkvWpe~~~P~i~VG~LtLnr~~~n~f~e~eq~aF~P~~lv 320 (498)
T d1gwea_ 241 HRQDLFESIAKGDHPKWDLYIQAIPYEEGKTYRFNPFDLTKTISQKDYPRIKVGTLTLNRNPENHFAQIESAAFSPSNTV 320 (498)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEEEETTHHHHCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCC
T ss_pred HHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66639999974999559999994153300127889888776475045964986788752687654320110155732256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 pGI~~S~Dp~Lq~R~faY~dt~~~Rlg~N~~qlPvN~P~~~~~n~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~ 400 (498)
T d1gwea_ 321 PGIGLSPDRMLLGRAFAYHDAQLYRVGAHVNQLPVNRPKNAVHNYAFEGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDD 400 (498)
T ss_dssp TTEECCSCHHHHHHHHHHHHHHHHHTCTTGGGSGGGCCSSCCCCSCCCCTTCCSCCTTCCSSSSCSSSCCCCCCCSSCTT
T ss_pred CCCCCCCCCHHCCCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76557988101032101277776215777766656688775556453686435788888887788788876556776788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~g~~~~~~~~~~~~~d~f~Q~~~l~~~~~~~~e~~~lv~n~~~~l~~~~~~i~~r~~~~~~~~d~~~g~~v~~~l~ 480 (498)
T d1gwea_ 401 GWEADGTLTREAQALRADDDDFGQAGTLVREVFSDQERDDFVETVAGALKGVRQDVQARAFEYWKNVDATIGQRIEDEVK 480 (498)
T ss_dssp CCCCCCCCCCCCCCCCTTCCSSHHHHHHHHHTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCEECCEEEEEECCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 62222406652046758998723848999873999999999999999863899999999999999878999999999860
Q ss_pred -----------------C
Q ss_conf -----------------9
Q 000235 1717 -----------------A 1717 (1815)
Q Consensus 1717 -----------------~ 1717 (1815)
-
T Consensus 481 ~~~~~~~p~~~~~~~~~~ 498 (498)
T d1gwea_ 481 RHEGDGIPGVEAGGEARI 498 (498)
T ss_dssp TTCCCCCTTCCCCSTTCC
T ss_pred HHCCCCCCCCCCCCCCCC
T ss_conf 113799998667888879
|
| >d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Neurolysin-like
domain: Thermostable carboxypeptidase 1
species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=37627.92 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~k~L~~~~~~i~~l~~~~~lL~WD~~T~MP~~g~~~Raeqla~Ls~~~he~~t~~~~~~ll~~~~~~~~L~~~ 80 (497)
T d1k9xa_ 1 EVFQNETIKQILAKYRRIWAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKAKGLENLNEY 80 (497)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHCSCCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHH
T ss_conf 94201899999999999999999999988988528996438999999999999999986599999999961077789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~anlr~~~r~~~~~~~iP~elv~~~a~~~s~a~~~W~~AR~~nDf~~f~P~Leklv~L~re~A~~l~~~~~pYDaLLd~ 160 (497)
T d1k9xa_ 81 ERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEAKAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALLDL 160 (497)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999999999999852999999999998642289999632127899999999999999999999816778841367886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 yEpg~t~~~ld~iF~~Lk~~L~pLl~~i~~~~~~~~~~~~~~~~~~~~~Q~~l~~~~~~~lGfDf~~~GRld~s~HPF~~ 240 (497)
T d1k9xa_ 161 YEEGLRTRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNLWILQKFGFPLGTRARLDVSAHPFTT 240 (497)
T ss_dssp HSTTCCHHHHHHHHHHHHHTHHHHHHHHHHHCSSCSCCGGGTCBCCHHHHHHHHHHHHHHHTCCBTTTEEEEECSSCCEE
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
T ss_conf 18999899999999888877889999998546799877321368989999999999999857675456423433775325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~DvRITTr~~e~~~~~~l~s~iHE~GHalYEq~l~~~~~~~plg~~~s~giHESQSr~~En~vgrs~~F~~~~~p~ 320 (497)
T d1k9xa_ 241 EFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIYPV 320 (497)
T ss_dssp EEETTEEEEEECCCSBCTHHHHHHHHHHHHHHHHHHTSCGGGTTSTTSSCSCHHHHHHHHHHHHTTTTTSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 78856420312315443788999999976466787388976714876678775401289999999996489999987247
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~f~~~~~~~~e~~y~~~n~v~p~~IRveADE~ty~lHi~lR~eiEk~li~g~l~v~Dlp~~Wn~~~~~ylGv~p~~d 400 (497)
T d1k9xa_ 321 LKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPRKY 400 (497)
T ss_dssp HHHHCGGGGGCCHHHHHHHHTCCCCCSCGGGCCTTTHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHSCCCSSG
T ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 77636656788889999875331764788988876522789999999999984999879999999999998569899997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~G~lQDiHW~~G~fGYFPtY~lG~i~aaQl~~~~~~~~~~~~~~~~~g~~~~l~~wL~e~i~~~G~~~~~~eli~~~TG 480 (497)
T d1k9xa_ 401 SEGILQDIHWAHGSIGYFPTYTIGTLLSAQLYYHIKKDIPDFEEKVAKAEFDPIKAWLREKIHRWGSIYPPKELLKKAIG 480 (497)
T ss_dssp GGTTTSCSHHHHTCCSCTHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHTCCHHHHHHHHHHTGGGTTSSCHHHHHHHHHS
T ss_pred CCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 56789887560787887617999999999999999986779888876179799999999999854258998999999868
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000235 1717 ----------------A 1717 (1815)
Q Consensus 1717 ----------------~ 1717 (1815)
-
T Consensus 481 e~l~~~~~~~yl~~kyl 497 (497)
T d1k9xa_ 481 EDMDAEYFVRWVKEKYL 497 (497)
T ss_dssp SCCCTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHCC
T ss_conf 99987999999887329
|
| >d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=37624.01 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~t~~~g~p~~~~~~s~t~g~~gp~ll~d~~l~e~l~hfdreripER~vHAKG~ga~G~ 80 (497)
T d1dgfa_ 1 RDPASDQMQHWKEQRAAQKADVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGY 80 (497)
T ss_dssp CCTTTTHHHHHHHHTTTSCCCBCBCTTCCBCSCSSSCEEESTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf 98378888998763025678844679997658986442058999606787999999875233446432246770536999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 F~vt~d~s~~t~a~~f~~~G~~tpV~vRFSt~~G~~~s~D~~rd~RG~AiKF~t~egn~DlV~nN~PvFfird~~~F~~f 160 (497)
T d1dgfa_ 81 FEVTHDITKYSKAKVFEHIGKKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSF 160 (497)
T ss_dssp EEECSCCTTTCCCGGGSSTTCEEEEEEEEECSSSCTTSCSSSSSCCEEEEEEEETTEEEEEEEESSSSCSCSSGGGHHHH
T ss_pred EEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHH
T ss_conf 99786558877515531578874189960158888998766788770589986488862254104775315899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 i~a~k~~p~t~~~d~~~~~dF~~~~Pes~~~~~~l~s~r~~P~Sy~~~~~~g~htf~~vn~~G~~~~VK~~~~P~~G~~~ 240 (497)
T d1dgfa_ 161 IHSQKRNPQTHLKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKN 240 (497)
T ss_dssp HHHHSBCTTTCSBCHHHHHHHHHHCGGGHHHHHHHTSGGGSBSSSTTSCEECCSCEEEECTTSCEEEEEEEEEETTCCCB
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCC
T ss_conf 99716687668887277999986397678899987355789887666766542158988137988999999983898777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~~eea~~l~g~dpd~l~~DL~~~i~~G~~p~w~l~vQl~~~~d~~~~~~~i~D~TkvWpe~~~P~i~VG~LtLn~~~~n 320 (497)
T d1dgfa_ 241 LSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVN 320 (497)
T ss_dssp CCHHHHHHHHHHCTTHHHHHHHHHHHTTCCCEEEEEEEEECHHHHHHCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSS
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHCCCCCCCCCCEECCCCCCCCEEEEEEEECCCCCC
T ss_conf 99999998537895278999999997589984289887158656525899976685434656775277122774358765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~e~eq~aF~P~~l~pGI~~S~Dp~Lq~R~~aY~dsqr~RlG~N~~qlPvN~P~~~~~~n~~rdG~m~~~~~~g~~~nY 400 (497)
T d1dgfa_ 321 YFAEVEQIAFDPSNMPPGIEASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNY 400 (497)
T ss_dssp HHHHTTTCCCCTTCCCTTEEECSCHHHHHHHHHHHHHHHHHTCTTGGGSGGGSCTTSCCCSSCCCCTTCCSCTTTTCCCS
T ss_pred CHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC
T ss_conf 12314021324111567655799943442310128887631687765577678776775774567701036789987871
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~pns~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~Q~~~~~~~~~~~~~~~~l~~n~~~~l~~~~~~i~~r~~~~~~~ 480 (497)
T d1dgfa_ 401 YPNSFGAPEQQPSALEHSIQYSGEVRRFNTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDAQIFIQKKAVKNFTE 480 (497)
T ss_dssp SSCSSCCCBCCGGGCCCCEECCSEEEECCCTTSCCSHHHHHHHHHTSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 58778975558776789823621888617898876323168888739999999999999998608999999999999998
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000235 1717 ----------------A 1717 (1815)
Q Consensus 1717 ----------------~ 1717 (1815)
-
T Consensus 481 ~d~~~g~~v~~~l~~~~ 497 (497)
T d1dgfa_ 481 VHPDYGSHIQALLDKYN 497 (497)
T ss_dssp HCHHHHHHHHHHHHHHC
T ss_pred HCHHHHHHHHHHHHHHC
T ss_conf 69999999999875409
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=37621.95 Aligned_cols=1 Identities=0% Similarity=-0.694 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~eaye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~ 80 (497)
T d1ya0a1 1 MSLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80 (497)
T ss_dssp CHHHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSS
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 94899999999987199979999519999999762999999998749301999857999999999999999998561645
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~ 160 (497)
T d1ya0a1 81 NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGD 160 (497)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 84379999999999999999999999999998789911399999857998758999999999998827889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~ 240 (497)
T d1ya0a1 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99980247899999999998789965999999999998699999999999998179997899999999998753015441
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~i~i~~~~~~~~~~~~~~~~~~ 320 (497)
T d1ya0a1 241 KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTY 320 (497)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHSCGGGGTSCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 23444425899999999999718866658999999999999998559976877999999999999851125544553200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LP~v~v~~~WL~~~~~~~~~~~~~~~~~~W~~la~lLN~L 400 (497)
T d1ya0a1 321 SQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSF 400 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCSSCSSSSSHHHHHHHHHHHTTCGGGGGCHHHHTTTTSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 14678989999999999999999998742301674204778999999999997822034433013763899999999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~LpED~~lrGf~pl~~~~~~~~f~~~~~~~~~~~~~~~~~~R~~ri~~~g~~la~~~~~~i~~d~~~ 480 (497)
T d1ya0a1 401 HPHEEDLSSISATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEV 480 (497)
T ss_dssp CCBSCCCC-CCCSCCHHHHHTTTCGGGHHHHTTCCCSSCC------CCHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEET
T ss_pred HCCCCCCCCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 22476667632688834788489955265605776445886555542158898999999999999975999856864145
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000235 1717 ----------------A 1717 (1815)
Q Consensus 1717 ----------------~ 1717 (1815)
+
T Consensus 481 ~~f~~~~~~~~~~~~~~ 497 (497)
T d1ya0a1 481 GKLLFITEIPELILEDP 497 (497)
T ss_dssp TEEEEECSSCCCCCCCC
T ss_pred CEEEECCCCHHHHCCCC
T ss_conf 92550278857543697
|
| >d1kvpa_ b.121.5.1 (A:) Microvirus capsid proteins {Bacteriophage phi-X174 [TaxId: 10847]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Microviridae-like VP domain: Microvirus capsid proteins species: Bacteriophage phi-X174 [TaxId: 10847]
Probab=100.00 E-value=0 Score=37622.19 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~~~~~R~~fdlSH~~k~t~~~G~LiPI~~~EVLPGDtf~l~~~~f~Rlat~~~PvMdn~~~d~ffFfVP~RlvW~dn 80 (497)
T d1kvpa_ 1 SNIQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMDAVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQ 80 (497)
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCEEEEEHHHCCCCCCCCCHHHHHHEEEEEEEECCEEEEEHHH
T ss_conf 97455776676554532103024650788886133699756751111013476542323320424788854500134757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 w~kF~~~~~n~~~~p~v~~~~~~~~~dYlg~p~~~~~~~~a~~~rAY~~IyNewfRd~nl~d~~~~~~~dg~d~~~~~~~ 160 (497)
T d1kvpa_ 81 WIKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNQDDARYGF 160 (497)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99874365888888855688886515320788777655131189999999998713878787654467988744678887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~r~k~~DyfTs~LP~~QkG~av~lplg~~Apv~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 240 (497)
T d1kvpa_ 161 RCCHLKNIWTAPLPPETELSRQMTTSTGMAPVTTKFRDVPNLSGTPLIFRDNKGRTIKTGQLGIGPVDAGFLVAQNTAQA 240 (497)
T ss_pred HHHHHCCCCCCCCCCHHCCCCEECCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 64011242135788630286033346652210002444556778750120256664123445565534551120356544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~LyADLS~At~~tI~~Lr~a~~~q~~~E~~ar~gtrY~e~i~~hfgv~s~Da~qRPeyLgg~~~~i~i~~V 320 (497)
T d1kvpa_ 241 ANGERAIPSNLWADLSNATSIDIMGLQAAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMRSNLWASGYDV 320 (497)
T ss_pred CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCEEECCC
T ss_conf 55777777533653233565359999999999999999875065279999985782477501184866287331250214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~qTs~t~~~~~~G~~~~~~~~~~~k~f~~EHG~Iigl~~vr~d~tYqqgl~~~w~r~~~ryd~~~y~p~lfa~lGeQ~V~ 400 (497)
T d1kvpa_ 321 DGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREIS 400 (497)
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEE
T ss_conf 67686666786634111048764501246643899999953786255545666323433011323362766037850113
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 nkEiy~~g~ssvfGY~~ry~eYR~~ps~v~g~f~~L~~w~~~q~~~s~sl~~~fi~~~~~~d~~f~~~~~~h~~~~~~fn 480 (497)
T d1kvpa_ 401 MKDVFRSGDSSKKFKIAEGQWYRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFN 480 (497)
T ss_pred EEEEEECCCCCCEECCCCHHHHCCCCHHCCHHHHCCCCCEEEECCCCCCCCCCEEECCCCCCHHHCCCCCHHHHEEEEEE
T ss_conf 00126637875203110224322361120122333466344313789873544173588614134046302100025763
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000235 1717 ----------------A 1717 (1815)
Q Consensus 1717 ----------------~ 1717 (1815)
.
T Consensus 481 i~~~R~mPt~~~~~~~~ 497 (497)
T d1kvpa_ 481 VTVYRNLPTTRDSIMTS 497 (497)
T ss_pred EEEEECCCCCCCCCCCC
T ss_conf 25750388643221369
|
| >d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Rabbit hemorrhagic disease virus [TaxId: 11976]
Probab=100.00 E-value=0 Score=37617.89 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~ePa~L~~~DpRl~~~~~~~~~~~~~ky~~~~~~~~~ 80 (497)
T d1khva_ 1 FCGEPIDYRGITAHRLVGAEPRPPVSGTRYAKVPGVPDEYKTGYRPANLGRSDPDSDKSLMNIAVKNLQVYQQEPKLDKV 80 (497)
T ss_dssp CEEEEEEETTEEEEEECSSCCCCCCCSEEEEECTTCCGGGCCCCEESCCGGGSSCTTCCHHHHHHHHHHGGGSCCSCSSC
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99986553332542203788888877512442489855589998798789999999987268899735477788988874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~TS~G~py~gkk~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 160 (497)
T d1khva_ 81 DEFIERAAADVLGYLRFLTKGERQANLNFKAAFNTLDLSTSCGPFVPGKKIDHVKDGVMDQVLAKHLYKCWSVANSGKAL 160 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCEECCCCHHHHHHHSCSSCBCCSSSCSBGGGTSCSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 79999999999999753488642334787888752588788888939830776368763389999999999998569988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~v~~~~LKDElrp~eKv~~gKTR~f~~~p~~~~l~~r~~f~~~~~~~~~~~~~~p~~VG~n~~~~~w~~l~~~l~~~~~ 240 (497)
T d1khva_ 161 HHIYACGLKDELRPLDKVKEGKKRLLWGCDVGVAVCAAAVFHNICYKLKMVARFGPIAVGVDMTSRDVDVIINNLTSKAS 240 (497)
T ss_dssp CCEEEEEECCCEECCC----CCCCEEEEECHHHHHHHHHHHHHHHHHHHHTTTTSSBCTTCCTTSTHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCEEEEECCCHHHEEEHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHCCC
T ss_conf 85223511022478877178991499956854614327974599999984167898640007887678999999763388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~DyS~FDssl~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~i~~~~g~v~~v~gG~PSG~p~Tsi~NSi~N~i~ 320 (497)
T d1khva_ 241 DFLCLDYSKWDSTMSPCVVRLAIDILADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSICHWLL 320 (497)
T ss_dssp EEEEEEETTHHHHCCHHHHHHHHHHHHTTBCCSHHHHHHHHHHHSCCEEECSSEEECCSSCCCTTSTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEECCEEEEEECCCCCCCCEEEHHHHHHHHHH
T ss_conf 18960257787875899999999999997156189999999876223796599899982777778814206541899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 i~~a~~~~~~~~~~~~~~~~~~~~~~~YGDD~lisv~~~~~~~~~~~~~~~~~~Gl~~T~~dKs~~~~~~~~~~v~FLkR 400 (497)
T d1khva_ 321 WSAAVYKSCAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLSPTAADKTEFIDVCPLNKISFLKR 400 (497)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHSCEEEETTEEEEEECHHHHHTHHHHHHHHHHTTCCEEESSTTSCSCCBCGGGCEETTE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 99999998523366878886554552005760587162468899999999998598846433567777877465722063
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~f~~~~~~~~~~Ld~~~I~~~l~W~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~hg~e~y~~~~~~i~~~~~~~~~ 480 (497)
T d1khva_ 401 TFELTDIGWVSKLDKSSILRQLEWSKTTSRHMVIEETYDLAKEERGVQLEELQVAAAAHGQEFFNFVCRELERQQAYTQF 480 (497)
T ss_dssp EEEEETTEEEEEECHHHHHHHHHEEEEEEEESSSCBCCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCC
T ss_pred EEEECCCEEEECCCHHHHHHHHEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 44967998960589999887442425898654202101246789999999999999867799999999999999986678
Q ss_pred ----------------C
Q ss_conf ----------------9
Q 000235 1717 ----------------A 1717 (1815)
Q Consensus 1717 ----------------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~r~~~~~~~~ 497 (497)
T d1khva_ 481 SVYSYDAARKILADRKR 497 (497)
T ss_dssp CCCCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHCCCC
T ss_conf 78769999999840589
|
| >d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Sema domain family: Sema domain domain: Semaphorin 3a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=37460.18 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~pr~~~~~~~l~~~~~~~~f~~~~~~~~~~~l~lD~~~~~lyVGA~N~ly~L~~~~~~~~~~~~~~~~~~d~~~C~~ 80 (495)
T d1q47a_ 1 KNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKW 80 (495)
T ss_dssp CCCSCSBCCCHHHHHTTTCCEEECCCTTCCCBCEEEEETTTTEEEEEEBTEEEEEESSCTTSEEEEECCCCHHHHHHHHH
T ss_pred CCCCCCEEEEHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCEEEEEEEEEEEEECHHHCCCCCEEECCCCHHHHHHCCC
T ss_conf 99887288777894144774587668898640079990899999999763299975142654306772688344112113
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~g~~~~~~c~N~iklL~~~~~~~LivCGS~a~qp~C~~~~l~~~~~~~~~~~~~~~~~~g~~~~p~~P~~~~~~~~~~g~ 160 (495)
T d1q47a_ 81 AGKDILKECANFIKVLEAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDGE 160 (495)
T ss_dssp TTCCTTTTSSCBEEEEEECSSSEEEEEECCSSSCEEEEEECCSCTTSCCCEEEEEEEEECTTTSCSSTTSCCEEEEETTE
T ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCEECCCCCCCCEEEEECCCE
T ss_conf 58996224854179999848984998258888863469988876666504413455567755678898665467711883
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 LY~gt~~~~~~~~~~i~R~~~~~~~~~t~~~~~~~l~~p~Fv~s~~i~~~~~~~~~~vYfff~e~~~e~~~~~~~~~sRv 240 (495)
T d1q47a_ 161 LYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARI 240 (495)
T ss_dssp EEEEEECSTTSCCEEEEEEESSSCCEECCSSCTTTCSSCEEEEEEEECCSSSGGGCEEEEEEEEECCCCSSCCCCEEEEE
T ss_pred EEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEHHCCCCCCEEEEEE
T ss_conf 99985257678985388437887652141101332178631466662235677899999999998211577786168889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 aRVCk~D~GG~~~l~~~wtSf~ka~L~Cs~~g~~~~~~~fn~lq~~~~~~~~~~~~~vlygvFst~~~~~~~SAvC~fsl 320 (495)
T d1q47a_ 241 GQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSM 320 (495)
T ss_dssp EEEETTCCCBSSSSBTBCSSCEEEEBCCEECCTTSCCEECCEEEEEEEECCSSTTCCEEEEEEECSCSSSCCEEEEEECH
T ss_pred EEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEH
T ss_conf 98635686765443456327888989850699877642132221027824689988479999604678888508999679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~I~~~F~g~~~~~~~~~~~~~~~~~~~p~~~~g~c~~~~~~~~~~s~~~~d~~l~f~~~~pl~~~~v~p~~~~pll~~~ 400 (495)
T d1q47a_ 321 SDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKT 400 (495)
T ss_dssp HHHHHHHTSCBEECSSTTBCCEECCSCCCSSCTTCCCCSSTTSCSCGGGCCHHHHHHHHTCCBBSSCBCCGGGSCSEEES
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 99999863202420177864322368888678765789753555763448843222213565645454766786548863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~T~iav~~v~~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~iee~~~~~~~~pI~~l~l~~~~~~Lyv~t 480 (495)
T d1q47a_ 401 DVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGS 480 (495)
T ss_dssp SSSSCEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEB
T ss_pred CCCCEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 76530679999999626785899999818987999998478876652106899986548997057789807899899996
Q ss_pred --------------C
Q ss_conf --------------9
Q 000235 1717 --------------A 1717 (1815)
Q Consensus 1717 --------------~ 1717 (1815)
.
T Consensus 481 ~~~V~~vpv~~C~~Y 495 (495)
T d1q47a_ 481 TAGVAQLPLHRCDIY 495 (495)
T ss_dssp SSCEEEEESCCTTCC
T ss_pred CCEEEEEEHHHCCCC
T ss_conf 895999886755698
|
| >d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Sheep (Ovis aries) [TaxId: 9940]
Probab=100.00 E-value=0 Score=37391.38 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~yI~G~w~~~~s~~~~~v~nP~t~e~i~~v~~a~~~dvd~Av~aA~~Af~a~~~W~~~s~~eR~~ 80 (494)
T d1bxsa_ 1 DVPAPLTNLQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGR 80 (494)
T ss_dssp CCCCCCSSCCCCCCSEEETTEEECCTTCCEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCEECCCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHH
T ss_conf 99987789776757777999753899999898557999988899808999999999999999875354132299999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 iL~kia~~L~~~~eela~l~~~E~Gk~~~e~~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~ 160 (494)
T d1bxsa_ 81 LLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQII 160 (494)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHTHHHHHHHHHHHHHHHGGGCCEEEECCSSSEEEEEEEEECCEEEEEC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCEEEEEEEE
T ss_conf 99999999986899999999876289605444322134567799986315540664523789814699975678999990
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 PwN~P~~~~~~~i~~ALaaGN~VVlKpse~tp~~a~~l~~~~~~aglP~gv~~~v~g~~~~~~~~l~~~p~v~~i~fTGS 240 (494)
T d1bxsa_ 161 PWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGS 240 (494)
T ss_dssp CSSSHHHHHHHHHHHHHHTTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECCC
T ss_conf 76653678888789999749869997898781999999999998297968089996896589999972989588995298
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~g~~i~~~aa~~~~~~~~lElGG~np~iV~~dadl~~a~~~i~~~~~~~~GQ~C~a~~rv~V~~~~~d~f~~~l~~~~ 320 (494)
T d1bxsa_ 241 TEVGKLIKEAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFVRRSVERA 320 (494)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 89999999972204887399976873848987674166768999987853898655410487425424678999998641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~g~~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~~E~FGPvl~ 400 (494)
T d1bxsa_ 321 KKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQ 400 (494)
T ss_dssp TCCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEE
T ss_pred HHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEECCEEEECCCCCCHHHHCCCCCCEEE
T ss_conf 30553034798885787689999999999999999769979867973689940580789847999767874656676589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 v~~~~~~~eai~~~n~~~~gL~a~i~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~~~SG~G~~~g~~~~~~ft 480 (494)
T d1bxsa_ 401 IMKFKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYT 480 (494)
T ss_dssp EEEECCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCCCCCTTSCBCCSGGGEESCBSHHHHHHTTE
T ss_pred EEEECCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99979999999999679999869999289999999998598759998289876889983762316177266899999843
Q ss_pred -------------C
Q ss_conf -------------9
Q 000235 1717 -------------A 1717 (1815)
Q Consensus 1717 -------------~ 1717 (1815)
.
T Consensus 481 ~~k~i~~~~~~~~~ 494 (494)
T d1bxsa_ 481 EVKTVTIKISQKNS 494 (494)
T ss_dssp EEEEEEEECSCCCC
T ss_pred CEEEEEEECCCCCC
T ss_conf 53899996587788
|
| >d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=0 Score=37390.10 Aligned_cols=1 Identities=0% Similarity=0.470 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~p~~~~~~~~I~G~w~~~~~~~~~~v~nP~tg~~i~~v~~a~~~dv~~Av~aA~~Af~~~~~W~~~~~~eRa~ 80 (494)
T d1o04a_ 1 AVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGR 80 (494)
T ss_dssp CCCCCCSSCCCCCCSEEETTEEECCTTCCEEEEEETTTTEEEEEEECBCHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCEECCCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHH
T ss_conf 98999999852347707899863899999897457999987899828999999999999999876366143199999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 iL~~~a~~l~~~~eela~~~~~E~GK~~~ea~~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~ 160 (494)
T d1o04a_ 81 LLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQII 160 (494)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTTCCEEEECCSSSEEEEEEEEECCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEEECCCEEEEEC
T ss_conf 99999999987299999999998576124545667889999899998778872482323689832699972343799988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 P~N~P~~~~~~~~~~ALaaGN~VVlKps~~~p~~~~~l~~l~~~aglP~gv~~~v~g~~~~~g~~L~~~~~v~~v~fTGS 240 (494)
T d1o04a_ 161 PWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGS 240 (494)
T ss_dssp CSSSHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECC
T ss_conf 86428889888999999829928996787780899999999998394927089996897689999960989698998598
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~g~~i~~~aa~~~~~~~~lElGG~~p~iV~~dAdl~~a~~~i~~~~~~~~GQ~C~a~~~v~v~~~i~d~f~~~l~~~~ 320 (494)
T d1o04a_ 241 TEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARA 320 (494)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 79999999972036987499977875838984675688887766654114576334236544432015677778999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~FGPvl~ 400 (494)
T d1o04a_ 321 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQ 400 (494)
T ss_dssp HHCCBCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEE
T ss_pred HHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEECCEEEECCCCCCHHHHCCCCCCEEE
T ss_conf 42442686666686577789999999999999999879999978982789974472879837999877885666676589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 v~~~~~~~eai~~an~~~~gL~a~i~s~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~~~SG~G~~~g~~~~~~ft 480 (494)
T d1o04a_ 401 ILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYT 480 (494)
T ss_dssp EEEECCHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCSGGGEESCBSTGGGGGGGE
T ss_pred EEEECCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 99969999999999679999869999089999999998688549998189987899994774526177015899999844
Q ss_pred -------------C
Q ss_conf -------------9
Q 000235 1717 -------------A 1717 (1815)
Q Consensus 1717 -------------~ 1717 (1815)
.
T Consensus 481 ~~k~v~~~~p~k~~ 494 (494)
T d1o04a_ 481 EVKTVTVKVPQKNS 494 (494)
T ss_dssp EEEEEEEECSCCCC
T ss_pred CEEEEEEECCCCCC
T ss_conf 72799996788889
|
| >d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: T7 phage DNA polymerase species: Bacteriophage T7 [TaxId: 10760]
Probab=100.00 E-value=0 Score=37386.82 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~i~lEh~va~il~~qE~~G~~~D~~~a~~L~~el~~~~~el~~eL~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (494)
T d1x9ma2 1 LEAVDIEHRAAWLLAKQERNGFPFDTKAIEELYVELAARRSELLRKLTETFGSWYQPKGGTEMFCHPRTGKPLPKYPRIK 80 (494)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCEEBCHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEECSCCBCCBCTTTCCBCTTSCCBB
T ss_pred CCHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHC
T ss_conf 94799899999999999995935759999999999999999999999999886605301323332100144331012110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~FN~~S~~Qi~~~L~~~g~~p~~~t~~g~~~~~~~~L~ 160 (494)
T d1x9ma2 81 TPKVGGIFKKPKNKAQREGREPCELDTREYVAGAPYTPVEHVVFNPSSRDHIQKKLQEAGWVPTKYTDKGAPVVDDEVLE 160 (494)
T ss_dssp CCSSCCSBC-------------CCBCCCSBCTTCCBEEEEEECCCTTCHHHHHHHHHHTTCCCCCBCTTSCBCCSHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 34324312143430345444321331110114886012035667999989999999985884544556686445678886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~dgri~~~~~~~~t~TGR~s~~~pnlqnip~~~~~~~~~ 240 (494)
T d1x9ma2 161 GVRVDDPEKQAAIDLIKEYLMIQKRIGQSAEGDKAWLRYVAEDGKIHGSVNPNGAVTGRATHAFPNLAQIPGVRSPYGEQ 240 (494)
T ss_dssp HCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTSTTCHHHHCCTTSEECCEEETTCSTTSCCEEESSCTTCCCCTTSTTHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 40122223456778899999999886344232066664302556610000114564675543355534587655444643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~r~~f~~~~~~~~~~~~g~~l~~~D~sqiElRvlA~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~R~~aK~~~fg~~Y 320 (494)
T d1x9ma2 241 CRAAFGAEHHLDGITGKPWVQAGIDASGLELRCLAHFMARFDNGEYAHEILNGDIHTKNQIAAELPTRDNAKTFIYGFLY 320 (494)
T ss_dssp HHHTBSGGGSBCTTTCCBCEEEEEEETTHHHHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHSCCSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 21023565333456899849998633023289999988742103567776641000232455302320366567777654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 G~g~~~la~~~~~~~~eA~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~t~~grrr~~~~~~~~~~~~~~~r~a~ 400 (494)
T d1x9ma2 321 GAGDEKIGQIVGAGKERGKELKKKFLENTPAIAALRESIQQTLVESSQWVAGEQQVKWKRRWIKGLDGRKVHVRSPHAAL 400 (494)
T ss_dssp TCCHHHHHTTTTCCHHHHHHHHHHHHHTCHHHHHHHHHHHHTTBC----------CCBSCSEEECTTSCEEECSCGGGHH
T ss_pred CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 01100012002344435543446899999999999987666666653113027874042134302477234535789998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 N~~iQg~~adi~k~a~~~~~~~l~~~~l~~~~~~~~~~v~~VHDEiv~ev~~~e~~~~~~~~~~~~m~~~~~~~~l~vPl 480 (494)
T d1x9ma2 401 NTLLQSAGALICKLWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWVGDHWNFRCLL 480 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSTTSSEEEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 29878489999999999999999983230002689679997363409987728999999999999999877526899858
Q ss_pred -------------C
Q ss_conf -------------9
Q 000235 1717 -------------A 1717 (1815)
Q Consensus 1717 -------------~ 1717 (1815)
+
T Consensus 481 ~~e~~~G~~W~e~h 494 (494)
T d1x9ma2 481 DTEGKMGPNWAICH 494 (494)
T ss_dssp CEEEEEESSTTTTC
T ss_pred EEECCCCCCHHHHC
T ss_conf 97688657969839
|
| >d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Leucyl-tRNA synthetase (LeuRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=37389.47 Aligned_cols=1 Identities=0% Similarity=-0.993 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~Y~p~~iE~~~~~~W~~~~~~~~~~~~~~~~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D 80 (494)
T d1h3na3 1 MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWD 80 (494)
T ss_dssp CCCCCCTTHHHHHHHHHHHHTTTCCCSSCCTTCEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99899799999999999977994567665689982898589988885124278889999999999981699546868737
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~ 160 (494)
T d1h3na3 81 AFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCP 160 (494)
T ss_dssp CSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEC
T ss_conf 36399999999809976898888877767788744866577885056886430369999977621885776117997616
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~t~l~~~ev~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~d~~Isr~~~~~~ 240 (494)
T d1h3na3 161 KCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRLRDWLISRQRYWGT 240 (494)
T ss_dssp TTTEEECGGGEETTEESSCTTSBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCSCCCEECEESCSSSE
T ss_pred CCCCEECCHHCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 75653311103367531246854774136741443200001111112233433321000110102434544564424654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~i~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~ 320 (494)
T d1h3na3 241 PIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYT 320 (494)
T ss_dssp ECCEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHTTSHHHHTT
T ss_pred CEEEEEECCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCHHHHCCCEEEEECCCCCCCEEEECEECCCCEEECCHHHHHC
T ss_conf 25777630321441442211100562101345777689935848361664235689852782311452200011011201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~G~v~~~~~~~~~~~~~~~ 400 (494)
T d1h3na3 321 DPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSV 400 (494)
T ss_dssp STTCSSSSSCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTE
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCHHHHHHCCCCCCCCHHCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 45433464312235335673211444420244411022112211012222230210554435717557566543356653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~d~~g~KMSKSlGNVIdP~~iI~~YGADalRl~ll~~s~~g~ 480 (494)
T d1h3na3 401 VRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPEN 480 (494)
T ss_dssp EECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHSCTTS
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCEEECCCEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCC
T ss_conf 24677622465226421005454203663102478538848854578889781798999987498999999996298156
Q ss_pred -------------C
Q ss_conf -------------9
Q 000235 1717 -------------A 1717 (1815)
Q Consensus 1717 -------------~ 1717 (1815)
.
T Consensus 481 di~~s~~~ieg~~r 494 (494)
T d1h3na3 481 EMVWTEEGVQGAWR 494 (494)
T ss_dssp CEEECHHHHHHHHH
T ss_pred CCCCCHHCCEECCC
T ss_conf 88747200810659
|
| >d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA Gyrase A species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=37314.09 Aligned_cols=1 Identities=0% Similarity=-0.394 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 v~RaiP~~~DGlKp~qRril~~~~~~~l~~~~~~~k~a~~~g~v~~~yHpHGd~s~~~~iv~maq~~~~~~~ll~~~G~F 80 (493)
T d1ab4a_ 1 VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 80 (493)
T ss_dssp CTTTSCBTTTCCCHHHHHHHHHHHHTTCCSSSCCEEHHHHHHHHHHHTCCSCHHHHHHHHHHTTCTTTCSSCSEEEESCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 97788962248857888999998862798899831441129978752688868999999999977512046132579988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Gs~~g~~~Aa~RYi~trLs~~~~~l~~~~d~~~~~~~~n~Dg~~~EP~~~p~~iP~lLvNG~~GIavG~sT~IP~hN~~e 160 (493)
T d1ab4a_ 81 GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE 160 (493)
T ss_dssp CCTTCCCCCCTTTCEEEECTTHHHHSTTTTTTCSCEEECTTSSSEEESSCCCSSCHHHHHCEEECCSSCCEEECCCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCHHHHHHHHCCCCCCHHH
T ss_conf 99999977560407765319999987642425015750888770464355440066887623201066663568899899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ii~~~~~~i~~~~~~~~~L~~~ipgPdfP~g~~~~g~~~~~~~y~~G~g~i~~r~~~~ie~~~k~~~~tI~ITELP~~~~ 240 (493)
T d1ab4a_ 161 VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVN 240 (493)
T ss_dssp HHHHHHHHHHCTTCCHHHHTTTCCSCCCSSCCEECCSHHHHHHHHHSEEEEEEECEEEEEC------CEEEEEECCTTCC
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCCHHHHHHCCCCEEEEEEEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 99998865023334599998348889988854687760089997369715998766899830358953799981387477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 t~~~~E~i~~lv~~kki~~I~d~rDes~~~~vr~vI~lk~~~~~~~~~~~L~k~t~L~ss~s~n~~~l~d~~pk~~~l~e 320 (493)
T d1ab4a_ 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKD 320 (493)
T ss_dssp HHHHHHHHHHHHTTTCSSCCCCEEECCCSSSCCEEEC------CHHHHHHHHHHSTTEEEEEEECEEEETTEEEECCHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCHHH
T ss_conf 99999999999975997766533014677562799965874418999999998522662434003430499515636999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 IL~~f~~~R~e~~~kR~~y~L~kle~rl~iL~g~~~~i~~IdevI~iIr~s~~~~~ak~~L~~~~~~~~~~~~~~~~~~~ 400 (493)
T d1ab4a_ 321 IIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGD 400 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECCGGGTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCC
T ss_conf 99999999999999999999999999999888799999965567653104567678999987500011117899987315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~e~~~~~~~~~~~~y~lse~Qa~~IL~MrL~~LT~le~~kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~EL~~l 480 (493)
T d1ab4a_ 401 DAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV 480 (493)
T ss_dssp CCCSCTTSCTTSEESSSEEECCHHHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 10141000100066677665799999999956999977777999999999999999999999689999999999999999
Q ss_pred ------------C
Q ss_conf ------------9
Q 000235 1717 ------------A 1717 (1815)
Q Consensus 1717 ------------~ 1717 (1815)
+
T Consensus 481 k~kfg~~RrT~Is 493 (493)
T d1ab4a_ 481 REQFGDKRRTEIT 493 (493)
T ss_dssp HHHHCCCCCSEEC
T ss_pred HHHHCCCCCCCCC
T ss_conf 9982998789899
|
| >d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus [TaxId: 11983]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Positive stranded ssRNA viruses family: Caliciviridae-like VP domain: Calicivirus capsid protein species: Norwalk virus [TaxId: 11983]
Probab=100.00 E-value=0 Score=37237.25 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~p~~~~Pvaga~~a~pt~G~~n~idp~i~~nfvqap~g~ftvs~~~~pG~~L~~l~LgP~~NpyLahLs~mYa~WrGs~~ 80 (492)
T d1ihma_ 1 DPLAMDPVAGSSTAVATAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLHLSQMYNGWVGNMR 80 (492)
T ss_dssp CCCSCCCCCCTTSGGGTSSCCBCCCTTTTTCCEEEEEEEEEECTTSCTTCEEEEEECSGGGSHHHHHHHTTBSEEECCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHEECCEE
T ss_conf 98667765644234565676666785268674654442678447888887878700378757199999987751427589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 v~f~~~GS~f~aGKllvA~vPPg~~~~~~t~~qa~~~PHVi~D~r~~~~v~~~iPdIr~~~yh~~~~~~~t~~L~~~Vyt 160 (492)
T d1ihma_ 81 VRIMLAGNAFTAGKIIVSCIPPGFGSHNLTIAQATLFPHVIADVRTLDPIEVPLEDVRNVLFHNNDRNQQTMRLVCMLYT 160 (492)
T ss_dssp EEEEEECCSSEECEEEEEEECTTSCCCCCCHHHHTTSSEEEEETTCSSCEEEEECCCCSSSCEESCTTSCCCEEEEEECS
T ss_pred EEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEECCCCCEEEEEEEEECCEEEEECCCCCCCEEEEEEEEC
T ss_conf 99999577534756999991998897887978905586799977889569998663054465655788896799999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 pLv~p~~~~ds~ti~~~V~trPg~DF~F~ll~pPs~e~~~~p~~l~~~~~~~~~~~R~~~~i~~~~~~~~~~~~~q~~n~ 240 (492)
T d1ihma_ 161 PLRTGGGTGDSFVVAGRVMTCPSPDFNFLFLVPPTVEQKTRPFTLPNLPLSSLSNSRAPLPISSMGISPDNVQSVQFQNG 240 (492)
T ss_dssp CCEECSSCCTTCCEEEEEEEEECTTCEECCBCCTTTCSTTCCCCCCCCCGGGCBCSSSSCBCCEEEECCTTCCCBCCSSS
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCC
T ss_conf 63058999984799999993677995799743765345658644677353112378777541058965786532001076
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~g~~~G~s~~~~~~i~~~~G~~~~~~~~l~~~dG~pydP~e~PAPlG~PDf~~~~~g~~~~~~~~~~~~~~~v~t~ 320 (492)
T d1ihma_ 241 RCTLDGRLVGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDLGGCDWHINMTQFGHSSQTQYDVDTT 320 (492)
T ss_dssp CBCTTSCBCTTCCSSGGGTTEEEEEEESSEEEEECTTSCBCCTTTCSSSTTCCCCCBCEEEEEEECTTSCCCEEEECCSC
T ss_pred EECCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECC
T ss_conf 18767867743326630189875147734899876899977877788667888624520220555147876334567237
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~faP~lGsI~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~w~lP~Y~g~l~~~~~lap~v~p~~~ge~~l~f~s~~p~~ 400 (492)
T d1ihma_ 321 PDTFVPHLGSIQANGIGSGNYVGVLSWISPPSHPSGSQVDLWKIPNYGSSITEATHLAPSVYPPGFGEVLVFFMSKMPGP 400 (492)
T ss_dssp STTCBGGGTEEECTTCCEEEEEEEEEEEECCSTTTSCCCBTTSCCCCCCCTTSCCCCCCCBCCCSTTCEEEEEEEEECBS
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 87658620269875523787548446764885578875101506875553234575688658999970899997478899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~cllpqe~~~hf~~~~~~~~~~~al~~yv~~~tgr~l~e~kl~~~g~~t~~~~~~~~~~~~~p~~g~f~f~swv~ 480 (492)
T d1ihma_ 401 GAYNLPCLLPQEYISHLASEQAPTVGEAALLHYVDPDTGRNLGEFKAYPDGFLTCVPNGASSGPQQLPINGVFVFVSWVS 480 (492)
T ss_dssp SCEEEEESSCHHHHHHHHHSCCCCCSSEEEEEEECTTTCCEEEEEEEETTTEEEECBSSTTCSGGGSCTTCEEEEEEEEC
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCEECCCCCEEEEEECCC
T ss_conf 99667773889999998753488643258898465899978788972478529981578888877808997799878235
Q ss_pred -----------C
Q ss_conf -----------9
Q 000235 1717 -----------A 1717 (1815)
Q Consensus 1717 -----------~ 1717 (1815)
.
T Consensus 481 ~~y~l~p~g~~~ 492 (492)
T d1ihma_ 481 RFYQLKPVGTAS 492 (492)
T ss_dssp TTCCCCCBSCCC
T ss_pred CCEEEECCCCCC
T ss_conf 715750366789
|
| >d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Alginate-binding periplasmic protein AlgQ2 species: Sphingomonas sp. [TaxId: 28214]
Probab=100.00 E-value=0 Score=37233.32 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~pvtl~~~~~~~~~~~~~~~~~~~~~~~e~~gikv~~~~~~~~~~~~~kl~~~lasg~~PDii~~~~~~~~~ 80 (492)
T d1j1na_ 1 KEATWVTDKPLTLKIHMHFRDKWVWDENWPVAKESFRLTNVKLQSVANKAATNSQEQFNLMMASGDLPDVVGGDNLKDKF 80 (492)
T ss_dssp CCTTCSCSSCEEEEEEEEETTTEECCTTSHHHHHHHHHHSEEEEECSCTTCCCHHHHHHHHHTSSCCCSEEEESSCHHHH
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 99776589987999998468654533261999997357696899996689778999999999789978799989846999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~G~l~dL~d~~~~~~~~~~~~~~~~~~~~~~~~~~dGk~YgiP~~~~~~~~~~~~ynkd~~~~~Gl~~p~t~de~ 160 (492)
T d1j1na_ 81 IQYGQEGAFVPLNKLIDQYAPHIKAFFKSHPEVERAIKAPDGNIYFIPYVPDGVVARGYFIREDWLKKLNLKPPQNIDEL 160 (492)
T ss_dssp HHHHHTTSBCCCHHHHHHHCHHHHHHHHHCHHHHHHHCCTTSCCCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHH
T ss_pred HHHHHCCCEEECHHHHHHHCHHHHHHHHHCHHHHHHHCCCCCEEEEEEEECCCCCCEEEEECHHHHHHHHHHCCCCCHHH
T ss_conf 99998899898879997617116888876789999713408839999873367632014761899998654202110369
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~k~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~l~~~ 240 (492)
T d1j1na_ 161 YTVLKAFKEKDPNGNGKADEVPFIDRHPDEVFRLVNFWGARSSGSDNYMDFYIDNGRVKHPWAETAFRDGMKHVAQWYKE 240 (492)
T ss_dssp HHHHHHHHHSCTTCSSSCCCEEECCSSTTHHHHGGGGGTCCSCSSSSTTCCEEETTEEECGGGSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999737565776552344467750488999999986315566521443168423505999999999999999976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~I~ 320 (492)
T d1j1na_ 241 GLIDKEIFTRKAKAREQMFGGNLGGFTHDWFASTMTFNEGLAKTVPGFKLIPIAPPTNSKGQRWEEDSRQKVRPDGWAIT 320 (492)
T ss_dssp TCBCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHTHHHHTTTTSTTCCEEEECCCBCTTSCCCBCCCCCSSCSCEEEEB
T ss_pred CCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99894202588799999986991999935478888776544421678128971577788876257677431244269998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~sk~~eaA~~fl~~l~s~e~~~~~~~G~eG~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (492)
T d1j1na_ 321 VKNKNPVETIKFFDFYFSRPGRDISNFGVPGVTYDIKNGKAVFKDSVLKSPQPVNNQLYDMGAQIPIGFWQDYDYERQWT 400 (492)
T ss_dssp TTCSCHHHHHHHHHHTTSHHHHHHHHHCCBTTTEEEETTEEEECHHHHHCSSCHHHHHHTTTCSCSSSEECCHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCEEEEECCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCC
T ss_conf 99989999999999971988899986377775147508866304433357641456766502344422246520121035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~~~~~e~~~~~i~G~~~~d~~~~~~~~~~~~~G~d~~~~ 480 (492)
T d1j1na_ 401 TPEAQAGIDMYVKGKYVMPGFEGVNMTREERAIYDKYWADVRTYMYEMGQAWVMGTKDVDKTWDEYQRQLKLRGLYQVLQ 480 (492)
T ss_dssp CHHHHHHHHHHHHHTCBCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 82679999998642123445765577832567899999899999999999999189998899999999999759899999
Q ss_pred -----------C
Q ss_conf -----------9
Q 000235 1717 -----------A 1717 (1815)
Q Consensus 1717 -----------~ 1717 (1815)
-
T Consensus 481 ~~q~~~d~~~~~ 492 (492)
T d1j1na_ 481 MMQQAYDRQYKN 492 (492)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998549
|
| >d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis fibuligera) [TaxId: 4944]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glucoamylase domain: Glucoamylase species: Yeast (Saccharomycopsis fibuligera) [TaxId: 4944]
Probab=100.00 E-value=0 Score=37231.84 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ni~~~~~~~~~~~~GaiIASPs~s~PDY~Y~W~RDaa~t~~aL~~ 80 (492)
T d2fbaa1 1 AYPSFEAYSNYKVDRTDLETFLDKQKEVSLYYLLQNIAYPEGQFNNGVPGTVIASPSTSNPDYYYQWTRDSAITFLTVLS 80 (492)
T ss_dssp CCTTCCCCTTCCCCTTCHHHHHHHHHHHHHHHHHHTBBCTTSSBTTSCTTCBCSCSCBSSSBCCSEEHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 99876655677520545999999868899999998269865444589988699508889999777767159999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~g~~~~a~~~l~~~~~~~~~~~~~lQ~~~~~~G~~~~~~~~g~~~p~y~~dg~~~~g~Wg~pQ~Dg~alr~~al~~~~~~ 160 (492)
T d2fbaa1 81 ELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAYTGAWGRPQNDGPALRAYAISRYLND 160 (492)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCBCCSCCSCCBTTHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 17717899999999999960004423314788776775445667763216888556887765457605688899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~l~~~w~~p~~dlWEE~~G~~~fT~a~~~aaL~~aa~lA~~~gd~ 240 (492)
T d2fbaa1 161 VNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGFDLWEENQGRHFFTSLVQQKALAYAVDIAKSFDDG 240 (492)
T ss_dssp HHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEECTTSCCEECCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999999987665113202355788999999999999861765554212245777579999999999999999982980
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lDas~ll~~~~~~~~~~~~~~~~~p~d~r~l~t~ 320 (492)
T d2fbaa1 241 DFANTLSSTASTLESYLSGSDGGFVNTDVNHIVENPDLLQQNSRQGLDSATYIGPLLTHDIGESSSTPFDVDNEYVLQSY 320 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTCCEETTTTEECSSHHHHHTTSCCSCCTHHHHHHHHHSCTTSCCCCSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf 57999999999999999871255446766703203654346898653210000000144312443268799978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~i~~~l~~~y~in~~~~~g~~~~RY~~D~Y~G~~~~~GnPW~l~T~w~Ae~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 400 (492)
T d2fbaa1 321 YLLLEDNKDRYSVNSAYSAGAAIGRYPEDVYNGDGSSEGNPWFLATAYAAQVPYKLAYDAKSASNDITINKINYDFFNKY 400 (492)
T ss_dssp HHHHHHHHHHCGGGTTCSSCCCCCSCTTCCBCSSSBSSCCCBHHHHHHHHHHHHHHHHHHHHHTCCEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 99999874206655777666768858765657878889984121038999999997765530356555550127889864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ad~~l~~~~~~~~~~G~L~EQ~d~~tG~~~sa~pLtWShA~~i~ 480 (492)
T d2fbaa1 401 IVDLSTINSAYQSSDSVTIKSGSDEFNTVADNLVTFGDSFLQVILDHINDDGSLNEQLNRYTGYSTGAYSLTWSSGALLE 480 (492)
T ss_dssp TCCGGGTCTTGGGSSEEEECTTSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCSEECTTTCCEESSTTCHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 00123233221111222213453256789898899889999999985687888780317999976887461778999999
Q ss_pred -----------C
Q ss_conf -----------9
Q 000235 1717 -----------A 1717 (1815)
Q Consensus 1717 -----------~ 1717 (1815)
.
T Consensus 481 A~~~r~~~~~~~ 492 (492)
T d2fbaa1 481 AIRLRNKVKALA 492 (492)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999997545109
|
| >d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Arylsulfatase domain: Arylsulfatase B (4-sulfatase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=37230.67 Aligned_cols=1 Identities=0% Similarity=-0.094 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~PNii~I~~D~~~~~~lg~~g~~~~TPnld~La~~Gv~F~n~~~~~~c~PSRasllTG~y~~~~Gv~~~~~~~~~~~~ 80 (492)
T d1fsua_ 1 SRPPHLVFLLADDLGWNDVGFHGSRIRTPHLDALAAGGVLLDNYYTQPLATPSRSQLLTGRYQIRTGLQHQIIWPCQPSC 80 (492)
T ss_dssp CCCCEEEEEEESSCCTTSSGGGTCSSCCHHHHHHHHTSEEETTEECCCC-CHHHHHHHHCSCHHHHTCCSSCCCTTCCCC
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC
T ss_conf 98988999985789967214599999887999999817020680208515899999997868365288667668877776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 l~~~~~tl~~~L~~~GY~T~~~GK~h~~~~~~~~~~~~~gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (492)
T d1fsua_ 81 VPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFRDGEE 160 (492)
T ss_dssp SCTTCCCHHHHHHHTTCEEEEEECCCSCCSSGGGSGGGTTCSEEEECSSSCCCTTTCEEEEEEGGGTEEEEEECCEETTE
T ss_pred CCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78540569999998699702126666688623333356887430354445554446655555564334565422346864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~Pffl~~~~~~~h~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~iG~ll 240 (492)
T d1fsua_ 161 VATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVT 240 (492)
T ss_dssp ECCSCTTCCHHHHHHHHHHHHHHTCCTTSCEEEEEECCTTSSSCCCCGGGTGGGTTCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 45664444215688899999887502688835872256787863122233222343332001334568989999998999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~L~~~gl~dnTiII~tsDHG~~~~~~g~~~~~~~~k~~~ye~~~~VPlii~~Pg~~~~~~~~~~~vs~vDi~PTil~la 320 (492)
T d1fsua_ 241 AALKSSGLWNNTVFIFSTDNGGQTLAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLA 320 (492)
T ss_dssp HHHHHTTCGGGEEEEEEESSCCCGGGTCCCTTSSCCTTSSSHHHHBCCEEEECTTCSSCSEEECSCEEGGGHHHHHHHHT
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
T ss_conf 99734688666404222687432036888864333565543342111101022222332233334552443565402112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 g~~~p~~~~~dG~sl~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~k~~ 400 (492)
T d1fsua_ 321 RGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHAAIRHGNWKLL 400 (492)
T ss_dssp TCCCTTSCCCCCCCCHHHHHHCCCCSCCEEEEEEETTCCCCSCC-----------------CCSCTTSEEEEEETTEEEE
T ss_pred CCCCCCCCCCCCEEHHHHHCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEE
T ss_conf 77789898857777799865897544321102025432335554333433323455554322235676158982986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eLydL~~DP~E~~NLa~~~p~~~~~l~~~L~~~~~~~~~~~~~~~d~~~ 480 (492)
T d1fsua_ 401 TGYPGCGYWFPPPSQYNVSEIPSSDPPTKTLWLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQDPRC 480 (492)
T ss_dssp ESCCSCCCBCCCTTTCSCSCBCCSCCTTCCEEEEETTTCTTCCSCCTTTCHHHHHHHHHHHHHHHHTCCCCCCCCCCGGG
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 51367764456621134322433468998785612563811534444568999999999999999872797689999875
Q ss_pred -----------C
Q ss_conf -----------9
Q 000235 1717 -----------A 1717 (1815)
Q Consensus 1717 -----------~ 1717 (1815)
-
T Consensus 481 ~~~~~~~~~~~~ 492 (492)
T d1fsua_ 481 DPKATGVWGPWM 492 (492)
T ss_dssp CCTTTTBCCCCC
T ss_pred CCCCCCCCCCCC
T ss_conf 867789648999
|
| >d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=37163.07 Aligned_cols=1 Identities=0% Similarity=-0.926 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~tt~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~~~hf~reripER~vHAKG~gA~G~F~vt~d~~~~t~a~~ 80 (491)
T d1qwla_ 1 MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKI 80 (491)
T ss_dssp CCCCCCCCBCTTSCBCSCSSCCCBSSTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 98888764279997658986443158999615677899999875143447542455772645899997787338675465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 f~~~Gk~~Pv~vRFSt~~G~~gs~D~~rd~RGfAiKf~t~eGn~DlV~nN~PvFfirdp~~F~~~i~a~k~~P~t~~~d~ 160 (491)
T d1qwla_ 81 FSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNH 160 (491)
T ss_dssp GSSTTCEEEEEEEEECSSCCTTSCSSSSSCCEEEEEEEETTEEEEEEEESSSCCSCSSGGGHHHHHHHHSCCTTTCSCCH
T ss_pred HCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 02688526568844358888999865677650589987488841021034650455999999999997166865666416
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~f~~~~Pes~~~~~~l~s~r~~p~S~~~~~~~g~htf~~vn~~G~~~~vK~~~~P~~G~~~lt~eea~~l~g~dpd 240 (491)
T d1qwla_ 161 DMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQGVKHLTNEEAAEIRKHDPD 240 (491)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHSGGGSBSSGGGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCCCH
T ss_conf 77999986197689999997355789876567776551258858036988999999980886556899999874568924
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~dl~~ai~~g~~~~w~l~vQl~~~~d~~~~~~d~~D~TkvWpe~~~P~i~VG~Ltlnr~~~n~f~e~eq~aF~P~~l 320 (491)
T d1qwla_ 241 SNQRDLFDAIARGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYTQDYPLMEVGIVELNKNPENYFAEVEQAAFTPANV 320 (491)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEEEEEGGGTTTCSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCC
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCHHHHHCCCCCCCCCCEECCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCC
T ss_conf 77776999997599852689999638757741898998887424657874287058874478755033311013223214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 vpGI~~S~Dp~Lq~R~faY~dt~r~RlG~Ny~qlPvN~p~~~v~~~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~ 400 (491)
T d1qwla_ 321 VPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDP 400 (491)
T ss_dssp CTTEECCCCHHHHHHHHHHHHHHHHHHCTTGGGSGGGSCSSCCCCSCCCCTTCCCTTTTCCCCSSCSSSCCCCCGGGCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57747799814430112147777521688776576778877544546578543578788888888778987778666789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~d~f~Qa~~~~~~~~~~e~~~lv~n~~~~l~~~~~~~i~~r~~~~~~~~d~~~g~~v~ 480 (491)
T d1qwla_ 401 KFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQLEHFKKADPKYAEGVK 480 (491)
T ss_dssp CBCGGGTCSCCCBSCCCHHHHCCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 87867653066544321589988765065799870999999999999999861899589999999999987999999999
Q ss_pred ----------C
Q ss_conf ----------9
Q 000235 1717 ----------A 1717 (1815)
Q Consensus 1717 ----------~ 1717 (1815)
.
T Consensus 481 ~~l~~~~~~~~ 491 (491)
T d1qwla_ 481 KALEKHQKMMK 491 (491)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHCC
T ss_conf 99998886429
|
| >d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Toluene, o-xylene monooxygenase oxygenase subunit TouA species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=0 Score=37162.35 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~ydl~r~lnW~~sy~~~~~~fP~~~~~~~~ik~~dW~~~rDP~~~~~r~Y~~~q~eke~~v~~~~d~~~r~~~ 80 (491)
T d2inca1 1 SMLKREDWYDLTRTTNWTPKYVTENELFPEEMSGARGISMEAWEKYDEPYKITYPEYVSIQREKDSGAYSIKAALERDGF 80 (491)
T ss_dssp CCCCHHHHHHHHTCCCCCCSSSCHHHHSCHHHHCCTTCCHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTTTTG
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 97540679985478999863677344485210355457600000126807888999999888999999889999984374
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~dprw~~~Lk~~Ls~i~~~Ey~A~~~~A~l~r~ap~~~~r~aaa~Q~lDElRHaQ~~~~l~~~~~~~~~~~d~~~k~ 160 (491)
T d2inca1 81 VDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKA 160 (491)
T ss_dssp GGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGGGGHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 11179899999999985143799999999999998778877999999998899999999999987640257744078997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~R~~~Ed~l~~~dw~e~~val~~v~E~~~tnL~~v~f~~~Aa~ngD~l~~tv~~siqsDEaRH~~~~~~~ 240 (491)
T d2inca1 161 IHTNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPS 240 (491)
T ss_dssp GGSCCHHHHHHHHHHHHHTTSSCHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 26667430789999998861288899998888768885327889889999986117669999998545877663234999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~~l~e~~~~~~~Q~~vd~~fWr~~r~~~~l~G~~mdY~~p~~~r~~s~ke~~~ew~~~~~~~~L~~yGl~~P~~~~~~~ 320 (491)
T d2inca1 241 LKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFM 320 (491)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHHHHHHHHTCCCCTTHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999676679999999999876648899887777765052522788999999999889999999994899870699998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~hH~~~~~~~~~~p~~~w~~~~~~~~~e~~Wle~kYPgw~~~~g~~w~~~~~~~~~g~~~~~~~~~lp~~C~~cq 400 (491)
T d2inca1 321 QDLDETHHGMHLGVWYWRPTVWWDPAAGVSPEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVPETLPTICNMCN 400 (491)
T ss_dssp HHTTTHHHHHHHHHHHTGGGSSSCCCCCCSHHHHHHHHHHSTTTTTTHHHHHHHHHHHHHTTCGGGGSCSSCBCBCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87778869999999998546316876799978998998659981666557899998652158764335788887442578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~P~~~~~~~~~~~~~~~~~~~G~~~~fcs~~c~~if~~eP~~y~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~d 480 (491)
T d2inca1 401 LPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQIDPERYKNHTNLVDRFLKGEIQPADLAGALMYMSLEPGVMGDD 480 (491)
T ss_dssp SBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHHHSGGGTTTCCCHHHHHHTTCSSSCSHHHHHHHTTCCTTTSCCC
T ss_pred CCCCCCCCCCCCCCCEEEEECCEEECCCCHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 87311888766443102467782530157567777741979882536789999714789727999999748996656886
Q ss_pred ----------C
Q ss_conf ----------9
Q 000235 1717 ----------A 1717 (1815)
Q Consensus 1717 ----------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~~~~ 491 (491)
T d2inca1 481 AHDYEWVKAYQ 491 (491)
T ss_dssp TTTTGGGGGCC
T ss_pred CCCCHHHHHCC
T ss_conf 33533676309
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=37160.76 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 d~lP~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~ 80 (491)
T d1vg0a1 1 DNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILEN 80 (491)
T ss_dssp CCCCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTT
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99987567899798859999999998669979984598767775200429999999986310466433344432112454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 e~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 160 (491)
T d1vg0a1 81 EEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQ 160 (491)
T ss_dssp EEEEEBCSSCCCEEEEEEEECSCC--------------------------------------------------------
T ss_pred CHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 00113444443112431010132112222112221124643222333344443222223553222211233456422345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~Pk~l~a~g~lv~~ 240 (491)
T d1vg0a1 161 CPGPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDL 240 (491)
T ss_dssp ------------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHEECCCHHHHH
T ss_conf 66743454434321233322345544555544456543433222100121023221114456511030331105679999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Li~S~v~rYlEFk~v~~~~v~~~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~e~l~ 320 (491)
T d1vg0a1 241 LIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEGTTFSEYLK 320 (491)
T ss_dssp HHHHTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGCHHHHHTTTTSBHHHHHT
T ss_pred HHHCCHHHHEEEEEECEEEEECCCEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98727111045787241899649918989899899733888788889999999998740447854222225896999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~l~~~~~~~i~~aial~~~~~~~~~~~l~ri~~yl~Slg~yG~spflyp~YG~gEipQ~FcR~~AV~Gg~Y~L~~~i~ 400 (491)
T d1vg0a1 321 TQKLTPNLQYFVLHSIAMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQ 400 (491)
T ss_dssp TSSSCHHHHHHHHHHTTC--CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEE
T ss_pred HCCCCHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 74997678888875400158998307999999999999998508987586667764677899999884496898688433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~~~~v~r~c~~~~~s~~~i~~~p~~~~~~d~~v~~a~~~~~~~ 480 (491)
T d1vg0a1 401 CLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVSRDCYNDLPSNVYVCSGPDSGLGNDNAVKQAETLFQQI 480 (491)
T ss_dssp EEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTTTTTCCGGGSSSCCTTEEEECCCCSSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEECCCCCEEECCEEEECHHHCCCCCCCEEEEHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 68884689818999856990986376998877678665660430433589853899788876776535663375564220
Q ss_pred ----------C
Q ss_conf ----------9
Q 000235 1717 ----------A 1717 (1815)
Q Consensus 1717 ----------~ 1717 (1815)
+
T Consensus 481 ~p~~~~cP~~p 491 (491)
T d1vg0a1 481 CPNEDFCPAPP 491 (491)
T ss_dssp STTCCSSCCCC
T ss_pred CCCCCCCCCCC
T ss_conf 79987689988
|
| >d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Peptide amidase Pam species: Stenotrophomonas maltophilia [TaxId: 40324]
Probab=100.00 E-value=0 Score=37081.05 Aligned_cols=1 Identities=100% Similarity=2.729 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 p~~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~a~~~A~~~d~~~~~g~~~gpL~GvP~~ 80 (490)
T d1m22a_ 1 PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRERRDGRLRGPLHGIPLL 80 (490)
T ss_dssp CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHHHTTCCCSTTTTCEEE
T ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 98840075999999998599979999999999999960738837999983999999999999999779989983878799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 vKD~~~v~g~~tt~Gs~~~~~~~~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~~~GG 160 (490)
T d1m22a_ 81 LKDNINAAPMATSAGSLALQGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCG 160 (490)
T ss_dssp EETTBCCTTSCCCTTCGGGTTCCCCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCS
T ss_pred EECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87434667974677465542668766266664203431010045660665323333444345678986686545557788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 SSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~vl~~~ 240 (490)
T d1m22a_ 161 SSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGR 240 (490)
T ss_dssp SSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 74317777777630035453334776432011451588512476556786444576467788646522554322333014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~l~~~g~~v~ev~~p~~~~~~~~~~~ 320 (490)
T d1m22a_ 241 DDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERT 320 (490)
T ss_dssp CTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGGGSTTHHHHHHHHHHHHHHTTCEEEEECCTTTTTTHHHHHH
T ss_pred CCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
T ss_conf 56675310001223310443126544445321134223455511125654447887630232110247734777889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (490)
T d1m22a_ 321 LLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAA 400 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986346676531343100788888877542101332012456788875302204678899999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~D~li~Pt~~~~~p~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~~GLPvGlQlig~~~~D~~LL~~A~~lE~~~ 480 (490)
T d1m22a_ 401 LAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT 480 (490)
T ss_dssp HHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 86669888983899866775765666508897999995999799977889997364888899999999999999999722
Q ss_pred ---------C
Q ss_conf ---------9
Q 000235 1717 ---------A 1717 (1815)
Q Consensus 1717 ---------~ 1717 (1815)
+
T Consensus 481 ~~~~pP~~~~ 490 (490)
T d1m22a_ 481 RARRPPHFDT 490 (490)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCC
T ss_conf 9899949998
|
| >d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aconitase iron-sulfur domain superfamily: Aconitase iron-sulfur domain family: Aconitase iron-sulfur domain domain: Aconitase B, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=37080.54 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~g~Tl~EKIl~~~~g~~~v~~G~~v~~~vD~v~~hD~t~p~~~~~~~~~g~~~~~p~~v~~~~DH~~p~~~~~ 80 (490)
T d1l5ja3 1 KDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPV 80 (490)
T ss_dssp CCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHHHHHHHHTTCCSCCSSCEEECCCSSSSSCCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHH
T ss_conf 97463799836999999985199987996989996789987214479999999985998578450789847778899877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~a~~~~~~r~fa~~~gi~~~~~~~GI~Hqv~~e~~~PG~~ivGtDSHT~~~g~~~~GvG~~e~~~al~tg~~~~~vPe~v 160 (490)
T d1l5ja3 81 DVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESV 160 (490)
T ss_dssp HHHHHHHHHHHHHTTTCEECCTTSBCHHHHHGGGCCTTCEEEESSTTCCCSSSEECCCCHHHHHHHHHHSBCCEECCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHHHHHHCCCEEEEECCCEE
T ss_conf 79999999999998199356688761132024625799758704887652334330533403677742576996178189
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~V~l~G~L~~gVtakDviL~i~~~l~~~G~~~~~~~~~~~~~~~~~~e~~gi~~Ls~~~R~Ti~NMa~E~ga~~~~~~~d 240 (490)
T d1l5ja3 161 LVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLN 240 (490)
T ss_dssp EEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEEESCTTCCHHHHHHHHHGGGTTTCSEEEECCC
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 99996248998870079999999874267438988723320156789851455557423245530237886384344127
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~A~y~~~~~idls~l~p~~~~~p~~~d~~~ 320 (490)
T d1l5ja3 241 KEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPILCAPNDPDDAR 320 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCCCCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEE
T ss_pred CHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHHHHCCCCCCCCHHHCC
T ss_conf 17799997411110234443201023321223245776512853245899997574455427872010246888622045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~g~~Id~v~IGSCTn~~~dl~~aA~iL~gkkv~~~V~~~V~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GCg~C 400 (490)
T d1l5ja3 321 PLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLC 400 (490)
T ss_dssp EGGGTTTCBCCEEEECSTTCCHHHHHHHHHHHHHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGG
T ss_pred CHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCHHH
T ss_conf 31122773447898404678753799999876303566662798338849999999987766489977949888653310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 iG~~~~l~~ge~~vss~NRNF~GR~G~~~~~yLaSP~~vaAsAi~G~itdp~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (490)
T d1l5ja3 401 MGNQARVADGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQY 480 (490)
T ss_dssp TCSSSCCCTTCEEEESSSCCCTTSSSTTCEEEECCHHHHHHHHHHSBCCCHHHHHHHHHHHHTTHHHHTCCCCGGGCHHH
T ss_pred HCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHH
T ss_conf 27098699999899825878888899998889889999999996640899899888774138773345434580014667
Q ss_pred ---------C
Q ss_conf ---------9
Q 000235 1717 ---------A 1717 (1815)
Q Consensus 1717 ---------~ 1717 (1815)
|
T Consensus 481 ~~~~~~~~~~ 490 (490)
T d1l5ja3 481 TEKADGVIFQ 490 (490)
T ss_dssp HHHHHTCCCC
T ss_pred HHHHHCCCCC
T ss_conf 7764410139
|
| >d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping white clover (Trifolium repens) [TaxId: 3899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: Plant beta-glucosidase (myrosinase) species: Creeping white clover (Trifolium repens) [TaxId: 3899]
Probab=100.00 E-value=0 Score=37079.85 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~FP~~F~wG~Atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~ 80 (490)
T d1cbga_ 1 FKPLPISFDDFSDLNRSCFAPGFVFGTASSAFQYEGAAFEDGKGPSIWDTFTHKYPEKIKDRTNGDVAIDEYHRYKEDIG 80 (490)
T ss_dssp CCCCTTCCCSGGGSSGGGSCTTCEEEEECCHHHHCCCSSSTTCCCBHHHHHHHHCGGGSTTCCCSSSTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99878784223557200399998384577187746783889986646665531387655789998765662552399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 l~~~lG~~~yRfSi~WsRI~P~g~~~g~~n~~gl~~Y~~~i~~l~~~GIeP~vTL~HfdlP~~l~~~~Ggw~n~~~~~~F 160 (490)
T d1cbga_ 81 IMKDMNLDAYRFSISWPRVLPKGKLSGGVNREGINYYNNLINEVLANGMQPYVTLFHWDVPQALEDEYRGFLGRNIVDDF 160 (490)
T ss_dssp HHHHTTCCEEEEECCHHHHSTTSSGGGCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHHHHCGGGSTTHHHHH
T ss_pred HHHHCCCCEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHCCCCCCCHHHHHHH
T ss_conf 99984999898267798748789888987999999999999999970874899850677758786426565897899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~Ya~~v~~~fgd~V~~W~T~NEP~~~~~~gy~~G~~~pg~~~~~~~~~~~~~~~~~~~~~a~h~~l~Aha~a~~~~r~~ 240 (490)
T d1cbga_ 161 RDYAELCFKEFGDRVKHWITLNEPWGVSMNAYAYGTFAPGRCSDWLKLNCTGGDSGREPYLAAHYQLLAHAAAARLYKTK 240 (490)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECHHHHHHHHHTSCCSTTCCCCGGGCSCCSSCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999871673535788268735642142345433455464100245456857899999999999889999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~vg~~~~~~~~~p~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~~~~~~~~~~~e~~~~~~~~~DF 320 (490)
T d1cbga_ 241 YQASQNGIIGITLVSHWFEPASKEKADVDAAKRGLDFMLGWFMHPLTKGRYPESMRYLVRKRLPKFSTEESKELTGSFDF 320 (490)
T ss_dssp THHHHCCEEEEEEECCEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSSCCHHHHHHHGGGSCCCCHHHHHHHTTCCSE
T ss_pred HHHCCCCCEEEEECCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCC
T ss_conf 53264753245531420003667817899999998875066446200687848999999725985546665411588670
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 iGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~i~P~Gl~~~L~~i~~~Y~~p~i~ITENG~ 400 (490)
T d1cbga_ 321 LGLNYYSSYYAAKAPRIPNARPAIQTDSLINATFEHNGKPLGPMAASSWLCIYPQGIRKLLLYVKNHYNNPVIYITENGR 400 (490)
T ss_dssp EEEECCCEEEEEECCCCTTCCCCHHHHTCEEEESEETTEESSCBCSSTTCBCCTHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CEECCEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 33523003585248878887766456544566432367778875678881388689999999999860898489966887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~d~~~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~EW~~G~~~RfGl~~VD~~~~~~R~pK~S 480 (490)
T d1cbga_ 401 NEFNDPTLSLQESLLDTPRIDYYYRHLYYVLTAIGDGVNVKGYFAWSLFDNMEWDSGYTVRFGLVFVDFKNNLKRHPKLS 480 (490)
T ss_dssp CEECCTTSCHHHHHCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEESCSBCCCCGGGTTSEECCSEEEETTTTTEEEECHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCHHHCCCCCCCEEEEECCCCCCCCCCCH
T ss_conf 77677666667762786899999999999999998799989983347037528223243667429980899966212158
Q ss_pred ---------C
Q ss_conf ---------9
Q 000235 1717 ---------A 1717 (1815)
Q Consensus 1717 ---------~ 1717 (1815)
.
T Consensus 481 ~~~y~~iI~~ 490 (490)
T d1cbga_ 481 AHWFKSFLKK 490 (490)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHCC
T ss_conf 9999999719
|
| >d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: beta-Amylase species: Soybean (Glycine max) [TaxId: 3847]
Probab=100.00 E-value=0 Score=37088.93 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~yVpVyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLK 80 (490)
T d1wdpa1 1 NMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLT 80 (490)
T ss_dssp HHHTTCCCEEEECCTTSBCTTSCBCCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCE
T ss_pred CCCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 97666441899724314557881668999999999999859868999645357404789846808999999999985982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 lq~vmSFHqCGGNvGD~~~IPLP~WV~~~g~~~pDi~ftDr~G~rn~E~lSl~~D~~pvl~GRTplq~Y~DFm~SFr~~F 160 (490)
T d1wdpa1 81 LQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENM 160 (490)
T ss_dssp EEEEEECSCBCCSTTCSCCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 78998622368977864035786888865301877165557787465502003055532479967999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~g~I~eI~VGlGP~GELRYPSYp~~~Gw~yPGiGEFQCYDky~~~~l~~aA~~~G~~~Wg~P~dag~yn~~P~~t 240 (490)
T d1wdpa1 161 SDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPEST 240 (490)
T ss_dssp HHHHHTTCEEEEEECCSGGGBSSCCCSCGGGTCCTTCCCCCCCCSHHHHHHHHHHHHHTTCTTCCSCSSSCCTTCCGGGS
T ss_pred HHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87634882789996666575655898854568868986423068799999999999983886557988676678999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~FF~~~G~~~s~YGkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rDGY 320 (490)
T d1wdpa1 241 GFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGY 320 (490)
T ss_dssp TTTSTTSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEECCCCCTTTTSTTCHHHHHHTCCCBTTBCSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCH
T ss_conf 97777986213100688999999999999999999998448988669999544013689989768873433578887557
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~Ia~m~~rh~~~l~FTC~EM~d~eq~~~a~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~d~~~~~qI~~~~~~~~~~~ 400 (490)
T d1wdpa1 321 RPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNN 400 (490)
T ss_dssp HHHHHHHHTTTCEEEECCTTCCGGGSCGGGCCCHHHHHHHHHHHHHHTTCCEEEECSSCCCSHHHHHHHHHHHSTTCCCT
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 99999998739769996136365679853468989999999999998099354001313028318999998453235767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~pl~~s~~~~~~~~~~~~~~~~~~~~~ 480 (490)
T d1wdpa1 401 NGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTLPFPW 480 (490)
T ss_dssp TSSCSSCCSEEEESCCCHHHHSHHHHHHHHHHHHHHTTTCCCCSCGGGGTCCCCCCCCCCCCCCHHHHHHTTSCCCCCCC
T ss_pred CCCCCCCCCEEEEECCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 78765652124653488766492108999999998566888898857728766754447998888999973588889898
Q ss_pred ---------C
Q ss_conf ---------9
Q 000235 1717 ---------A 1717 (1815)
Q Consensus 1717 ---------~ 1717 (1815)
.
T Consensus 481 ~~~~~~~~~~ 490 (490)
T d1wdpa1 481 LPETDMKVDG 490 (490)
T ss_dssp CSSCSSCSCC
T ss_pred CCCCCCCCCC
T ss_conf 8777887899
|
| >d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: beta-Glycosidase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=36999.46 Aligned_cols=1 Identities=0% Similarity=-1.059 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~FP~~F~wG~Atsa~QiEG~~~~~~~~~s~wd~~~~~~~~~~~~~~~~d~~~~a~d~y~~y~eDi~l~~~lG~~~yRf 80 (489)
T d1uwsa_ 1 MYSFPNSFRFGWSQAGFQSEMGTPGSEDPNTDWYKWVHDPENMAAGLVSGDLPENGPGYWGNYKTFHDNAQKMGLKIARL 80 (489)
T ss_dssp CEECCTTCEEEEECCHHHHSCSSTTCCCCCBHHHHHHHCHHHHHHTSSCSCCGGGSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCCEEEEECHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98799999786775688766697879998700344324677546787788864531218885999999999739997982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 SI~WsRI~P~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~gl~~Y~~~id~l~~~GIeP~VTL~H~dlP~~L~d~ 160 (489)
T d1uwsa_ 81 NVEWSRIFPNPLPRPQNFDESKQDVTEVEINENELKRLDEYANKDALNHYREIFKDLKSRGLYFILNMYHWPLPLWLHDP 160 (489)
T ss_dssp ECCHHHHCCSCCCCC--CCTTCSCCCCCCCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCEEEEESCSSCCBTTTBCH
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
T ss_conf 06287568688765432222333322122222222224467799999999999999997399508997078874888865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~f~~~GGW~n~~~v~~F~~YA~~v~~~fgdrVk~WiTiNEP~~~~~~gy~g~~~~~pp~~~~~~~~~~~~hn~l 240 (489)
T d1uwsa_ 161 IRVRRGDFTGPSGWLSTRTVYEFARFSAYIAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPPGYLSFELSRRAMYNII 240 (489)
T ss_dssp HHHHTTCCSSCBGGGSHHHHHHHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHTCGGGCCTTCCCCHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 42024554457884787899999999999998855720078850787289632624666788866678888778899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~Aha~a~~~~~~~~~~~igi~~~~~~~~p~~~~d~~a~~~~~~~~~~~f~d~~~~G~yp~~~~~~~~~~l~~~~DfiGiN 320 (489)
T d1uwsa_ 241 QAHARAYDGIKSVSKKPVGIIYANSSFQPLTDKDMEAVEMAENDNRWWFFDAIIRGEITRGNEKIVRDDLKGRLDWIGVN 320 (489)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEEEEEEEEESSTTCHHHHHHHHHHHTHHHHHHHHHCEEC----CEECTTTTTCCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf 99999999987504676416871352221351489999999876556788899988764433543300346766732341
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 yY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~rY~~PI~ITENG~~~~~D~~Ri~ 400 (489)
T d1uwsa_ 321 YYTRTVVKRTEKGYVSLGGYGHGCERNSVSLAGLPTSDFGWEFFPEGLYDVLTKYWNRYHLYMYVTENGIADDADYQRPY 400 (489)
T ss_dssp EEEEEEEEECSSSEEECTTSTTSSCSSSBCTTSCBBCTTCCBCCTHHHHHHHHHHHHHHCCCEEEEECCCCCTTCSSHHH
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 33011102577766565766766544554578887676787658405667778786435998899458877778613899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~t~~R~~K~S~~~y~~ii~~~~~~~~~~~~~~ 480 (489)
T d1uwsa_ 401 YLVSHVYQVHRAINSGADVRGYLHWSLADNYEWASGFSMRFGLLKVDYNTKRLYWRPSALVYREIATNGAITDEIEHLNS 480 (489)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEESCSBCCCCGGGGGGSCCCSEEECTTTCCEEECHHHHHHHHHHHHTEECGGGGGGSS
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 99999999999998699989984336226518545420667418985899962425589999999976999847741478
Q ss_pred --------C
Q ss_conf --------9
Q 000235 1717 --------A 1717 (1815)
Q Consensus 1717 --------~ 1717 (1815)
+
T Consensus 481 ~~~~~~~~~ 489 (489)
T d1uwsa_ 481 VPPVKPLRH 489 (489)
T ss_dssp CCCSTTSCC
T ss_pred CCCCCCCCC
T ss_conf 998788889
|
| >d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Photosystem II antenna protein-like superfamily: Photosystem II antenna protein-like family: Photosystem II antenna protein-like domain: Photosystem II core light harvesting protein PsbB species: Thermosynechococcus elongatus [TaxId: 146786]
Probab=100.00 E-value=0 Score=36933.09 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 G~pWwaGNarvin~SGr~LgAHvaHagLI~fWAGamtLfEla~fdPs~pv~~PM~eQGlIlLPHLAtLG~g~~~~Gw~~~ 80 (488)
T d2axtb1 1 GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSIT 80 (488)
T ss_dssp CBCGGGGGGTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCTTTSCGGGGTCSSHHHHHHTTCCBCTTSCBTT
T ss_pred CCCCEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCEEHHHHHHCCCCCCCCCCCCC
T ss_conf 99734321598358875399999889899997016776565413777655686242352100334302346545775103
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 G~~g~~~~~ypyfvIgvlHLIsSaVLg~Ggi~H~~~gp~~l~~~~~~~~~~~d~~kilGihL~~lgll~~~f~a~~~~gl 160 (488)
T d2axtb1 81 GETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGL 160 (488)
T ss_dssp CCTTCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGBCSSSSSBCCCHHHHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred CCCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 78753067542304578999999999989888441066013228766851104054404598999999999999985200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 y~pgi~~~~p~~~~g~v~~v~p~~~~~G~~~~nleDivGGHi~vG~l~I~GGiwHI~trP~~~~~k~~~~~sgEa~LSyS 240 (488)
T d2axtb1 161 FGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSS 240 (488)
T ss_dssp TSCCEEECCTTSSSCEEECCCCCCSGGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHTTTTCTHHHHHHH
T ss_pred ECCCEEECCCCCEEEEEEEECCCCCCCEECCCCCCCCEECHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCCHHHHHHHH
T ss_conf 10868835653013489871367745612568864345102899999976317777636728988751067736878888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 Laava~~gfiaA~~~wyn~tayP~EfyGPtr~~~d~~yF~~~i~r~~~asla~g~~~a~Aw~ai~~~l~~yd~ig~~pa~ 320 (488)
T d2axtb1 241 IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAK 320 (488)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTSCTTTSCCCTHHHHTTHHHHHHHHHHHHHHHTCCCHHHHHTTSCHHHHHHTBGGGCTTS
T ss_pred HHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999988330332575671764087743346752012200222310025540877876647876522220357665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 gGLfr~Gp~~~Gdg~~~~~~G~~~fr~~~G~~lf~~r~~~F~e~~~~~L~~~~G~~~~Dip~rr~e~~~~~e~~g~~~~~ 400 (488)
T d2axtb1 321 GGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF 400 (488)
T ss_dssp CBTTCCSCGGGTSCEEEEECCEEEEECTTCCEEEECCCCTTCSSCCCEEECTTCCEEEECCSBGGGCSSBTTTSCCEEEE
T ss_pred CCCCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCEEEEE
T ss_conf 75311266557773022257761563698756665424531014751356799853467405542112551331315887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~gg~~~~~~~~~~~~~~~y~~~A~lG~~~s~~~~~~~~~~v~~~SpR~w~t~~H~~~~~~ff~GH~WH~~r~~~~~~~~g 480 (488)
T d2axtb1 401 YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSG 480 (488)
T ss_dssp ESSTTTTCEECCHHHHHHHHHHHTTBSCEEEECTTTTCCSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTTC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 31322660015778999885436577742357523045752303871567889999999999887763047888887607
Q ss_pred -------C
Q ss_conf -------9
Q 000235 1683 -------T 1683 (1815)
Q Consensus 1683 -------~ 1683 (1815)
.
T Consensus 481 ~~~~~~~~ 488 (488)
T d2axtb1 481 IDPELSPE 488 (488)
T ss_dssp BCSSCCCC
T ss_pred CCCCCCCC
T ss_conf 79885779
|
| >d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Photosystem II antenna protein-like superfamily: Photosystem II antenna protein-like family: Photosystem II antenna protein-like domain: Photosystem II core light harvesting protein PsbB species: Thermosynechococcus elongatus [TaxId: 146786]
Probab=100.00 E-value=0 Score=36931.40 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 G~pWwaGNarvin~SGr~LgAHvaHagLI~fWAGamtLfEla~fdPs~pv~~PM~eQGlIlLPHLAtLG~g~~~~Gw~~~ 80 (488)
T d2axtb1 1 GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSIT 80 (488)
T ss_dssp CBCGGGGGGTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCTTTSCGGGGTCSSHHHHHHTTCCBCTTSCBTT
T ss_pred CCCCEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCEEHHHHHHCCCCCCCCCCCCC
T ss_conf 99734321598358875399999889899997016776565413777655686242352100334302346545775103
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 G~~g~~~~~ypyfvIgvlHLIsSaVLg~Ggi~H~~~gp~~l~~~~~~~~~~~d~~kilGihL~~lgll~~~f~a~~~~gl 160 (488)
T d2axtb1 81 GETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGL 160 (488)
T ss_dssp CCTTCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGBCSSSSSBCCCHHHHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred CCCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCE
T ss_conf 78753067542304578999999999989888441066013228766851104054404598999999999999985200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 y~pgi~~~~p~~~~g~v~~v~p~~~~~G~~~~nleDivGGHi~vG~l~I~GGiwHI~trP~~~~~k~~~~~sgEa~LSyS 240 (488)
T d2axtb1 161 FGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSS 240 (488)
T ss_dssp TSCCEEECCTTSSSCEEECCCCCCSGGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHTTTTCTHHHHHHH
T ss_pred ECCCEEECCCCCEEEEEEEECCCCCCCEECCCCCCCCEECHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCCHHHHHHHH
T ss_conf 10868835653013489871367745612568864345102899999976317777636728988751067736878888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Laava~~gfiaA~~~wyn~tayP~EfyGPtr~~~d~~yF~~~i~r~~~asla~g~~~a~Aw~ai~~~l~~yd~ig~~pa~ 320 (488)
T d2axtb1 241 IAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAK 320 (488)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTSCTTTSCCCTHHHHTTHHHHHHHHHHHHHHHTCCCHHHHHTTSCHHHHHHTBGGGCTTS
T ss_pred HHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999988330332575671764087743346752012200222310025540877876647876522220357665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 gGLfr~Gp~~~Gdg~~~~~~G~~~fr~~~G~~lf~~r~~~F~e~~~~~L~~~~G~~~~Dip~rr~e~~~~~e~~g~~~~~ 400 (488)
T d2axtb1 321 GGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF 400 (488)
T ss_dssp CBTTCCSCGGGTSCEEEEECCEEEEECTTCCEEEECCCCTTCSSCCCEEECTTCCEEEECCSBGGGCSSBTTTSCCEEEE
T ss_pred CCCCCCCCCCCCCCEEECCCCCEEEECCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCEEECCEEEEE
T ss_conf 75311266557773022257761563698756665424531014751356799853467405542112551331315887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~gg~~~~~~~~~~~~~~~y~~~A~lG~~~s~~~~~~~~~~v~~~SpR~w~t~~H~~~~~~ff~GH~WH~~r~~~~~~~~g 480 (488)
T d2axtb1 401 YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSG 480 (488)
T ss_dssp ESSTTTTCEECCHHHHHHHHHHHTTBSCEEEECTTTTCCSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTTC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 31322660015778999885436577742357523045752303871567889999999999887763047888887607
Q ss_pred -------C
Q ss_conf -------9
Q 000235 1717 -------A 1717 (1815)
Q Consensus 1717 -------~ 1717 (1815)
+
T Consensus 481 ~~~~~~~~ 488 (488)
T d2axtb1 481 IDPELSPE 488 (488)
T ss_dssp BCSSCCCC
T ss_pred CCCCCCCC
T ss_conf 79885779
|
| >d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=36931.13 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~l~hf~reripER~vHAKG~gA~G~F~~t~d~s~~t~a~~ 80 (488)
T d1a4ea_ 1 DVREDRVVTNSTGNPINEPFVTQRIGEHGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSGAFGYFEVTDDITDICGSAM 80 (488)
T ss_dssp CCCTTCBCBCTTSCBCSSSSCEEEETTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGG
T ss_pred CCCCCCEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 97556523779996657986450057999705677899999874055557542245773666899997887268776576
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 f~~~Gk~~PV~vRFSt~~G~~~s~D~~rd~RG~AiKf~t~eGn~DlV~nn~PvFfird~~~F~~fl~a~k~~p~t~~~d~ 160 (488)
T d1a4ea_ 81 FSKIGKRTKCLTRFSTVGGDKGSADTVRDPRGFATKFYTEEGNLDWVYNNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDA 160 (488)
T ss_dssp GSSTTCEEEEEEEEECSSSCTTCCSSSSSCCEEEEEEEETTEEEEEEEESSSSCSCSCTTHHHHHHHHHSCCTTTCSCCH
T ss_pred HCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCEECCCHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 21688526369961158889998544578772589997588851141115673024899998899973177887788886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~df~s~p~~~es~~~~~~l~s~~~~P~sy~~~~~~g~htf~~vn~~G~~~~vK~~~~P~~G~~~L~~eEA~~l~g~d 240 (488)
T d1a4ea_ 161 DMFWDFLTTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHTYKWSNKNGDWHYVQVHIKTDQGIKNLTIEEATKIAGSN 240 (488)
T ss_dssp HHHHHHHTSGGGGGGHHHHHHHHSGGGSBSCGGGCCEECCSCEEEECTTSCEEEEEEEEEESSCCCBCCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCC
T ss_conf 78899985887346688899875368898875666665500378870589899999998818977779999999852679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 pd~l~~DL~~~i~~g~~p~w~l~vQl~~~~d~~~~~~~i~D~Tk~WPe~~~P~i~vG~l~ln~~~~n~f~e~Eq~aF~P~ 320 (488)
T d1a4ea_ 241 PDYCQQDLFEAIQNGNYPSWTVYIQTMTERDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPS 320 (488)
T ss_dssp TTHHHHHHHHHHHTTCCCEEEEEEEEECHHHHHTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTT
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCCC
T ss_conf 51778989999975898458999996177676328999767805614556754441678863685321012120245533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~lvpGI~~S~Dp~Lq~R~faY~dt~r~RlG~N~~qlPvN~P~~~~~~n~~~rDG~m~~~~n~~~~pny~pn~~~~~~~~~ 400 (488)
T d1a4ea_ 321 TTVPYQEASADPVLQARLFSYADAHRYRLGPNFHQIPVNCPYASKFFNPAIRDGPMNVNGNFGSEPTYLANDKSYTYIQQ 400 (488)
T ss_dssp CCCTTEEECSCHHHHHHHHHHHHHHHHHTCTTGGGSGGGSCTTSCCCCTTSCCCTTCCSCTTTTCCSSCCTTSCCBCCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 46886547998201010000477765036767655665788773225750257865557887888886788788887667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~ddf~Qa~~~y~~~~~~~~e~~~lv~n~~~~l~~~~~~i~~r~~~~~~~~d~~lg 480 (488)
T d1a4ea_ 401 DRPIQQHQEVWNGPAIPYHWATSPGDVDFVQARNLYRVLGKQPGQQKNLAYNIGIHVEGACPQIQQRVYDMFARVDKGLS 480 (488)
T ss_dssp TCCSSTTSCCEEECEEEECCCCCSSSHHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHH
T ss_conf 87777774212565011022477778876272499988068899999999999998718999999999999998799999
Q ss_pred -------C
Q ss_conf -------9
Q 000235 1683 -------T 1683 (1815)
Q Consensus 1683 -------~ 1683 (1815)
.
T Consensus 481 ~~va~~~~ 488 (488)
T d1a4ea_ 481 EAIKKVAE 488 (488)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
T ss_conf 99999749
|
| >d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=36928.52 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~l~hf~reripER~vHAKG~gA~G~F~~t~d~s~~t~a~~ 80 (488)
T d1a4ea_ 1 DVREDRVVTNSTGNPINEPFVTQRIGEHGPLLLQDYNLIDSLAHFNRENIPQRNPHAHGSGAFGYFEVTDDITDICGSAM 80 (488)
T ss_dssp CCCTTCBCBCTTSCBCSSSSCEEEETTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGG
T ss_pred CCCCCCEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 97556523779996657986450057999705677899999874055557542245773666899997887268776576
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 f~~~Gk~~PV~vRFSt~~G~~~s~D~~rd~RG~AiKf~t~eGn~DlV~nn~PvFfird~~~F~~fl~a~k~~p~t~~~d~ 160 (488)
T d1a4ea_ 81 FSKIGKRTKCLTRFSTVGGDKGSADTVRDPRGFATKFYTEEGNLDWVYNNTPVFFIRDPSKFPHFIHTQKRNPQTNLRDA 160 (488)
T ss_dssp GSSTTCEEEEEEEEECSSSCTTCCSSSSSCCEEEEEEEETTEEEEEEEESSSSCSCSCTTHHHHHHHHHSCCTTTCSCCH
T ss_pred HCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCEECCCHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 21688526369961158889998544578772589997588851141115673024899998899973177887788886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~df~s~p~~~es~~~~~~l~s~~~~P~sy~~~~~~g~htf~~vn~~G~~~~vK~~~~P~~G~~~L~~eEA~~l~g~d 240 (488)
T d1a4ea_ 161 DMFWDFLTTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHTYKWSNKNGDWHYVQVHIKTDQGIKNLTIEEATKIAGSN 240 (488)
T ss_dssp HHHHHHHTSGGGGGGHHHHHHHHSGGGSBSCGGGCCEECCSCEEEECTTSCEEEEEEEEEESSCCCBCCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCC
T ss_conf 78899985887346688899875368898875666665500378870589899999998818977779999999852679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 pd~l~~DL~~~i~~g~~p~w~l~vQl~~~~d~~~~~~~i~D~Tk~WPe~~~P~i~vG~l~ln~~~~n~f~e~Eq~aF~P~ 320 (488)
T d1a4ea_ 241 PDYCQQDLFEAIQNGNYPSWTVYIQTMTERDAKKLPFSVFDLTKVWPQGQFPLRRVGKIVLNENPLNFFAQVEQAAFAPS 320 (488)
T ss_dssp TTHHHHHHHHHHHTTCCCEEEEEEEEECHHHHHTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTT
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCCC
T ss_conf 51778989999975898458999996177676328999767805614556754441678863685321012120245533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~lvpGI~~S~Dp~Lq~R~faY~dt~r~RlG~N~~qlPvN~P~~~~~~n~~~rDG~m~~~~n~~~~pny~pn~~~~~~~~~ 400 (488)
T d1a4ea_ 321 TTVPYQEASADPVLQARLFSYADAHRYRLGPNFHQIPVNCPYASKFFNPAIRDGPMNVNGNFGSEPTYLANDKSYTYIQQ 400 (488)
T ss_dssp CCCTTEEECSCHHHHHHHHHHHHHHHHHTCTTGGGSGGGSCTTSCCCCTTSCCCTTCCSCTTTTCCSSCCTTSCCBCCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 46886547998201010000477765036767655665788773225750257865557887888886788788887667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~ddf~Qa~~~y~~~~~~~~e~~~lv~n~~~~l~~~~~~i~~r~~~~~~~~d~~lg 480 (488)
T d1a4ea_ 401 DRPIQQHQEVWNGPAIPYHWATSPGDVDFVQARNLYRVLGKQPGQQKNLAYNIGIHVEGACPQIQQRVYDMFARVDKGLS 480 (488)
T ss_dssp TCCSSTTSCCEEECEEEECCCCCSSSHHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHH
T ss_conf 87777774212565011022477778876272499988068899999999999998718999999999999998799999
Q ss_pred -------C
Q ss_conf -------9
Q 000235 1717 -------A 1717 (1815)
Q Consensus 1717 -------~ 1717 (1815)
.
T Consensus 481 ~~va~~~~ 488 (488)
T d1a4ea_ 481 EAIKKVAE 488 (488)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
T ss_conf 99999749
|
| >d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Trichoderma reesei [TaxId: 51453]
Probab=100.00 E-value=0 Score=36928.18 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~R~~~Vk~~F~~aw~~Y~~~Awg~DEl~PiS~~~~d~~~g~g~TlVDsLdTL~iMgl~~ef~~a~~~v~~i~f 80 (488)
T d1hcua_ 1 KRGSPNPTRAAAVKAAFQTSWNAYHHFAFPHDDLHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTILQYVPQINF 80 (488)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHHHHHHTTTSSEEETTTTEEECTTTTSCHHHHHHHHHHHHTTCHHHHHHHHHHGGGCCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99899899999999999999999998678843026788997898887255899888999985894999999999985567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~vsvFEttIR~LGGLLsay~Ls~~~~~~~~~~~~~~~~lL~kA~dL~d~Ll~aF~t~tgiP~~~vnl~~~~~ 160 (488)
T d1hcua_ 81 TTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLANGLKVAFTTPSGVPDPTVFFNPTVR 160 (488)
T ss_dssp TCCSSTTCCEEHHHHHHHHHHHHHHHHHHHHTTTGGGCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEEECSSSCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 76656678645344538888799999997268543434443103689999999999988732489897231243145677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~Ae~gsl~LEF~~LS~lTGd~kY~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~~g~~~~~~~~~Ga~~DS 240 (488)
T d1hcua_ 161 RSGASSNNVAEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDS 240 (488)
T ss_dssp ECCCSEEEHHHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCCBCCCEECSSTTTHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEECCCEEECCCCCH
T ss_conf 78988876544420788899999973880799999999999986413776788876743547899664241200565426
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~YEYLlK~~il~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~hL~cF~gGl~aLg~~~~~~~ 320 (488)
T d1hcua_ 241 FYEYLIKMYLYDPVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLTFLSSYNGQSTSPNSGHLASFGGGNFILGGILLNEQ 320 (488)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHTEECBTTCTTCCEECEEETTEEESEEEGGGGGHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCH
T ss_conf 89999999985576407789999999999999851388876673687435788788764430114436665222134606
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~a~~l~~~c~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~y~LRPE~iES~fyLyR~Tg 400 (488)
T d1hcua_ 321 KYIDFGIKLASSYFGTYTQTASGIGPEGFAWVDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTG 400 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSCCCSEEECCBTTTCCSCCCCGGGHHHHHHHSCEEEECCBCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 77888999999999999986504686114524333334678810010124566611036666889227789999999818
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 d~~yr~~gw~if~ai~~~~rt~~G~a~i~dV~~~~~~~~~D~meSF~laETLKYlYLlF~d~~~~~l~~~~~d~~VfnTE 480 (488)
T d1hcua_ 401 DSKWQDLAWEALSAIEDACRAGSAYSSINDVTQANGGGASDDMESFWFAEALKYAYLIFAEESDVQVQATGGNKFVFNTE 480 (488)
T ss_dssp BHHHHHHHHHHHHHHHHHHEETTEECCBSCTTSTTCSCBCSCBCHHHHHTHHHHHHHHHSCCCSSSCCTTSCCCEEECTT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCC
T ss_conf 98999999999999999702686741450234689998688656539989999999525787445656577898687478
Q ss_pred -------C
Q ss_conf -------9
Q 000235 1683 -------T 1683 (1815)
Q Consensus 1683 -------~ 1683 (1815)
+
T Consensus 481 aHPl~i~s 488 (488)
T d1hcua_ 481 AHPFSIRS 488 (488)
T ss_dssp SCEEECCC
T ss_pred CCCEECCC
T ss_conf 86031689
|
| >d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Trichoderma reesei [TaxId: 51453]
Probab=100.00 E-value=0 Score=36924.65 Aligned_cols=1 Identities=0% Similarity=0.171 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~R~~~Vk~~F~~aw~~Y~~~Awg~DEl~PiS~~~~d~~~g~g~TlVDsLdTL~iMgl~~ef~~a~~~v~~i~f 80 (488)
T d1hcua_ 1 KRGSPNPTRAAAVKAAFQTSWNAYHHFAFPHDDLHPVSNSFDDERNGWGSSAIDGLDTAILMGDADIVNTILQYVPQINF 80 (488)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHHHHHHTTTSSEEETTTTEEECTTTTSCHHHHHHHHHHHHTTCHHHHHHHHHHGGGCCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99899899999999999999999998678843026788997898887255899888999985894999999999985567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~vsvFEttIR~LGGLLsay~Ls~~~~~~~~~~~~~~~~lL~kA~dL~d~Ll~aF~t~tgiP~~~vnl~~~~~ 160 (488)
T d1hcua_ 81 TTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATNQTLVNSLLRQAQTLANGLKVAFTTPSGVPDPTVFFNPTVR 160 (488)
T ss_dssp TCCSSTTCCEEHHHHHHHHHHHHHHHHHHHHTTTGGGCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEEECSSSCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 76656678645344538888799999997268543434443103689999999999988732489897231243145677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~Ae~gsl~LEF~~LS~lTGd~kY~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~~g~~~~~~~~~Ga~~DS 240 (488)
T d1hcua_ 161 RSGASSNNVAEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDS 240 (488)
T ss_dssp ECCCSEEEHHHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCCBCCCEECSSTTTHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEECCCEEECCCCCH
T ss_conf 78988876544420788899999973880799999999999986413776788876743547899664241200565426
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~YEYLlK~~il~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~hL~cF~gGl~aLg~~~~~~~ 320 (488)
T d1hcua_ 241 FYEYLIKMYLYDPVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLTFLSSYNGQSTSPNSGHLASFGGGNFILGGILLNEQ 320 (488)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHTEECBTTCTTCCEECEEETTEEESEEEGGGGGHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCH
T ss_conf 89999999985576407789999999999999851388876673687435788788764430114436665222134606
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~a~~l~~~c~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~y~LRPE~iES~fyLyR~Tg 400 (488)
T d1hcua_ 321 KYIDFGIKLASSYFGTYTQTASGIGPEGFAWVDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTG 400 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSCCCSEEECCBTTTCCSCCCCGGGHHHHHHHSCEEEECCBCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 77888999999999999986504686114524333334678810010124566611036666889227789999999818
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 d~~yr~~gw~if~ai~~~~rt~~G~a~i~dV~~~~~~~~~D~meSF~laETLKYlYLlF~d~~~~~l~~~~~d~~VfnTE 480 (488)
T d1hcua_ 401 DSKWQDLAWEALSAIEDACRAGSAYSSINDVTQANGGGASDDMESFWFAEALKYAYLIFAEESDVQVQATGGNKFVFNTE 480 (488)
T ss_dssp BHHHHHHHHHHHHHHHHHHEETTEECCBSCTTSTTCSCBCSCBCHHHHHTHHHHHHHHHSCCCSSSCCTTSCCCEEECTT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCC
T ss_conf 98999999999999999702686741450234689998688656539989999999525787445656577898687478
Q ss_pred -------C
Q ss_conf -------9
Q 000235 1717 -------A 1717 (1815)
Q Consensus 1717 -------~ 1717 (1815)
.
T Consensus 481 aHPl~i~s 488 (488)
T d1hcua_ 481 AHPFSIRS 488 (488)
T ss_dssp SCEEECCC
T ss_pred CCCEECCC
T ss_conf 86031689
|
| >d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Hypothetical protein YliB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=36855.19 Aligned_cols=1 Identities=0% Similarity=0.105 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~l~v~~~~~~~sldP~~~~~~~~~~~~~~~~~~L~~~d~~~~~~P~LA~~w~~s~D~~~~tf~Lr~~~~wsDG~pvT 80 (487)
T d1uqwa_ 1 AAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFN 80 (487)
T ss_dssp CCCEEEEEESSCCCCSCGGGCCSHHHHHHHTTTCCCSEEECTTSCEEESSEEEEEECTTSSEEEEEECTTCBCTTSCBCC
T ss_pred CCCEEEEEECCCCCEECHHHCCCCHHHHHHHHHHHHHHEECCCCCEEHHHEEEEEECCCCCEEEEEECCCCEECCCCCCC
T ss_conf 99509999789998032410468189999999844421199499898113678799799968999928979979949975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 a~Dv~~s~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvgt 160 (487)
T d1uqwa_ 81 AAAVKANLDRASDPANHLKRHNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGKEIGFYPVGT 160 (487)
T ss_dssp HHHHHHHHHHHTCGGGCCTTGGGTTTEEEEEEEETTEEEEEESSCCTTHHHHHTSTTCCCCCHHHHHHHGGGTTTSCCCS
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEC
T ss_conf 99999999998584545552123455432222223300100122202355553154100034566642264246771105
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 Gpy~~~~~~~~~~~~l~~~~~~~~~~~p~~~~i~~~~~~d~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (487)
T d1uqwa_ 161 GPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQTGEAQFAFPIPYEQATLLEKNKNIELMASPS 240 (487)
T ss_dssp SSEEEEEEETTTEEEEEECTTCSSTTCCCCSEEEEEECCCHHHHHHHHHHTSCSEECSCCHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 87433454578411134300024466763022036861567888888744442065130244555543014321234773
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~n~~~~~~~d~~~R~Al~~aidr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ak~ll~~ag~~~ 320 (487)
T d1uqwa_ 241 IMQRYISMNVTQKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEAGYPN 320 (487)
T ss_dssp EEEEEEEECTTSTGGGSHHHHHHHHHHCCHHHHHHHHHTTCEEECSSSSCTTSBTCCCCCCCCCCHHHHHHHHHHHTCTT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 10000233545676689999899997532045565531567655312225642345667888889999999998532122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 g~~~~~~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 400 (487)
T d1uqwa_ 321 GFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSASTGEADWALSPLFA 400 (487)
T ss_dssp CEEEEEEEECCSSSHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHTTSCCTTTCCCCEEEEEEECTTSBHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCHHHHHHHHHH
T ss_conf 22222222222210678999999998636430489981689999999731454213010132036888884888877640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 s~~~~~~~~N~~~~~~~~~d~l~~~a~~~~d~~~r~~~~~~~~~~l~~~~~~ipL~~~~~~~~~~~~v~G~~~~p~g~~~ 480 (487)
T d1uqwa_ 401 SQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFS 480 (487)
T ss_dssp GGGTTTTSCCTTCCCCHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEESCEECTTSCEE
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEECCCCCCEEECCCCCCE
T ss_conf 47889887656777989999999998626999999999999999999729999999866899987886863798998724
Q ss_pred ------C
Q ss_conf ------9
Q 000235 1683 ------T 1683 (1815)
Q Consensus 1683 ------~ 1683 (1815)
.
T Consensus 481 f~~~~~~ 487 (487)
T d1uqwa_ 481 FEDADLQ 487 (487)
T ss_dssp CTTCEEC
T ss_pred EEEEEEC
T ss_conf 8789979
|
| >d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Hypothetical protein YliB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=36852.75 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~l~v~~~~~~~sldP~~~~~~~~~~~~~~~~~~L~~~d~~~~~~P~LA~~w~~s~D~~~~tf~Lr~~~~wsDG~pvT 80 (487)
T d1uqwa_ 1 AAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFN 80 (487)
T ss_dssp CCCEEEEEESSCCCCSCGGGCCSHHHHHHHTTTCCCSEEECTTSCEEESSEEEEEECTTSSEEEEEECTTCBCTTSCBCC
T ss_pred CCCEEEEEECCCCCEECHHHCCCCHHHHHHHHHHHHHHEECCCCCEEHHHEEEEEECCCCCEEEEEECCCCEECCCCCCC
T ss_conf 99509999789998032410468189999999844421199499898113678799799968999928979979949975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 a~Dv~~s~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvgt 160 (487)
T d1uqwa_ 81 AAAVKANLDRASDPANHLKRHNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGKEIGFYPVGT 160 (487)
T ss_dssp HHHHHHHHHHHTCGGGCCTTGGGTTTEEEEEEEETTEEEEEESSCCTTHHHHHTSTTCCCCCHHHHHHHGGGTTTSCCCS
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCEEC
T ss_conf 99999999998584545552123455432222223300100122202355553154100034566642264246771105
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 Gpy~~~~~~~~~~~~l~~~~~~~~~~~p~~~~i~~~~~~d~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (487)
T d1uqwa_ 161 GPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQTGEAQFAFPIPYEQATLLEKNKNIELMASPS 240 (487)
T ss_dssp SSEEEEEEETTTEEEEEECTTCSSTTCCCCSEEEEEECCCHHHHHHHHHHTSCSEECSCCHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 87433454578411134300024466763022036861567888888744442065130244555543014321234773
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~n~~~~~~~d~~~R~Al~~aidr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ak~ll~~ag~~~ 320 (487)
T d1uqwa_ 241 IMQRYISMNVTQKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEAGYPN 320 (487)
T ss_dssp EEEEEEEECTTSTGGGSHHHHHHHHHHCCHHHHHHHHHTTCEEECSSSSCTTSBTCCCCCCCCCCHHHHHHHHHHHTCTT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 10000233545676689999899997532045565531567655312225642345667888889999999998532122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 g~~~~~~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 400 (487)
T d1uqwa_ 321 GFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSASTGEADWALSPLFA 400 (487)
T ss_dssp CEEEEEEEECCSSSHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHTTSCCTTTCCCCEEEEEEECTTSBHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCHHEEEEECCCCCCCHHHHHHHHHH
T ss_conf 22222222222210678999999998636430489981689999999731454213010132036888884888877640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 s~~~~~~~~N~~~~~~~~~d~l~~~a~~~~d~~~r~~~~~~~~~~l~~~~~~ipL~~~~~~~~~~~~v~G~~~~p~g~~~ 480 (487)
T d1uqwa_ 401 SQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFS 480 (487)
T ss_dssp GGGTTTTSCCTTCCCCHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEESCEECTTSCEE
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEECCCCCCEEECCCCCCE
T ss_conf 47889887656777989999999998626999999999999999999729999999866899987886863798998724
Q ss_pred ------C
Q ss_conf ------9
Q 000235 1717 ------A 1717 (1815)
Q Consensus 1717 ------~ 1717 (1815)
.
T Consensus 481 f~~~~~~ 487 (487)
T d1uqwa_ 481 FEDADLQ 487 (487)
T ss_dssp CTTCEEC
T ss_pred EEEEEEC
T ss_conf 8789979
|
| >d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nickel-iron hydrogenase, large subunit domain: Nickel-iron hydrogenase, large subunit species: Desulfomicrobium baculatum [TaxId: 899]
Probab=100.00 E-value=0 Score=36849.69 Aligned_cols=1 Identities=0% Similarity=-0.693 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~kI~IdPvtRiEGh~~l~v~vd~g~V~~a~~~~~~~RGfEk~l~Gr~~~d~~~i~~RICGiC~~aH~lA~~~AvE~a~gi 80 (487)
T d1cc1l_ 1 VKISIDPLTRVEGHLKIEVEVKDGKVVDAKCSGGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQDDAFGV 80 (487)
T ss_dssp CEEEESSCCSSBSCEEEEEEEETTEEEEEEEEECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHHTC
T ss_pred CEEEECCCCEEEEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 93796885637536899999849989999981321426999977999889888850421135868999999999998099
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~vp~~a~~lR~l~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 160 (487)
T d1cc1l_ 81 KVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQYLKALEI 160 (487)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88978999999999999999989889875020321564434000000004667777651233201234677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (487)
T d1cc1l_ 161 RRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIAF 240 (487)
T ss_dssp HHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGSSCCCCCCEEEC
T ss_pred HHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999999997499867686436874778999999999999999999999765899999998755565427773213673
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 g~~~~~~~~~~~~~~~g~~~~g~~~~~D~~~i~e~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~ys~~k~p~y~~~~~e 320 (487)
T d1cc1l_ 241 GVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRYKDKPCE 320 (487)
T ss_dssp CEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSCCEEEETTBCCB
T ss_pred ECCCCCCCHHHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf 02246543455324781476597604447664014660355336766557534411134676543310026201786200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 vGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~~~~~~~ 400 (487)
T d1cc1l_ 321 VGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAETYVKSEI 400 (487)
T ss_dssp CSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCBCCCCC
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 37989998650212714799998864312232156776435869999999999999999999998737899974457899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 p~~g~GvG~vEApRG~L~H~~~i~~g~i~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~~~~iirs~DP 480 (487)
T d1cc1l_ 401 PDAAEGTGFTEAPRGALLHYLKIKDKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDP 480 (487)
T ss_dssp CSSEEEEEEEEETTEEEEEEEEEETTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCC
T ss_pred CCCCEEEEEEECCCHHEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 99948999998897026999999799898989988873235433422353399998479987785215679889731886
Q ss_pred ------C
Q ss_conf ------9
Q 000235 1683 ------T 1683 (1815)
Q Consensus 1683 ------~ 1683 (1815)
-
T Consensus 481 CisCa~H 487 (487)
T d1cc1l_ 481 CLGCAVH 487 (487)
T ss_dssp BHHHHHC
T ss_pred CCCCCCC
T ss_conf 5153161
|
| >d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit {Desulfomicrobium baculatum [TaxId: 899]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nickel-iron hydrogenase, large subunit domain: Nickel-iron hydrogenase, large subunit species: Desulfomicrobium baculatum [TaxId: 899]
Probab=100.00 E-value=0 Score=36848.87 Aligned_cols=1 Identities=0% Similarity=-0.859 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~kI~IdPvtRiEGh~~l~v~vd~g~V~~a~~~~~~~RGfEk~l~Gr~~~d~~~i~~RICGiC~~aH~lA~~~AvE~a~gi 80 (487)
T d1cc1l_ 1 VKISIDPLTRVEGHLKIEVEVKDGKVVDAKCSGGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQDDAFGV 80 (487)
T ss_dssp CEEEESSCCSSBSCEEEEEEEETTEEEEEEEEECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHHTC
T ss_pred CEEEECCCCEEEEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 93796885637536899999849989999981321426999977999889888850421135868999999999998099
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~vp~~a~~lR~l~~~~e~i~sH~lh~~~l~~pD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 160 (487)
T d1cc1l_ 81 KVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTYGLNQYLKALEI 160 (487)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 88978999999999999999989889875020321564434000000004667777651233201234677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 r~~~~~i~~~~gG~~~h~~~~~pGGv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (487)
T d1cc1l_ 161 RRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIAF 240 (487)
T ss_dssp HHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGSSCCCCCCEEEC
T ss_pred HHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999999997499867686436874778999999999999999999999765899999998755565427773213673
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 g~~~~~~~~~~~~~~~g~~~~g~~~~~D~~~i~e~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~ys~~k~p~y~~~~~e 320 (487)
T d1cc1l_ 241 GVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRYKDKPCE 320 (487)
T ss_dssp CEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSCCEEEETTBCCB
T ss_pred ECCCCCCCHHHHCCCCCEEECCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCC
T ss_conf 02246543455324781476597604447664014660355336766557534411134676543310026201786200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 vGPlAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~~~~~i~~~l~~~~~~~~~~~~~~~ 400 (487)
T d1cc1l_ 321 VGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQPGAETYVKSEI 400 (487)
T ss_dssp CSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCBCCCCC
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 37989998650212714799998864312232156776435869999999999999999999998737899974457899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 p~~g~GvG~vEApRG~L~H~~~i~~g~i~~~~ii~PT~~N~~p~~~~~~~~~~e~~l~g~~v~d~~~~~~~~~iirs~DP 480 (487)
T d1cc1l_ 401 PDAAEGTGFTEAPRGALLHYLKIKDKKIENYQIVSATLWNANPRDDMGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDP 480 (487)
T ss_dssp CSSEEEEEEEEETTEEEEEEEEEETTEEEEEEEEETHHHHSCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCC
T ss_pred CCCCEEEEEEECCCHHEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 99948999998897026999999799898989988873235433422353399998479987785215679889731886
Q ss_pred ------C
Q ss_conf ------9
Q 000235 1717 ------A 1717 (1815)
Q Consensus 1717 ------~ 1717 (1815)
+
T Consensus 481 CisCa~H 487 (487)
T d1cc1l_ 481 CLGCAVH 487 (487)
T ss_dssp BHHHHHC
T ss_pred CCCCCCC
T ss_conf 5153161
|
| >d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Glutamyl-tRNA(Gln) amidotransferase subunit A species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=36700.23 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 m~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD 80 (485)
T d2f2aa1 1 MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKD 80 (485)
T ss_dssp CCSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEET
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 99857899999999985999899999999999998699741999949999999999999999779999981768698885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~v~g~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaa 160 (485)
T d2f2aa1 81 NIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA 160 (485)
T ss_dssp TBCBTTBCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHH
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 60668972577584330687542101001100356530022223332143456675446767887765556776654226
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 avA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~ 240 (485)
T d2f2aa1 161 AVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTS 240 (485)
T ss_dssp HHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTS
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 67754676577517884222227985954554899977899988876667832514498999999986100356554456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~i~~a~~~a~~~L~~~G~~v~ev~lp~~~~~~~~~~~~~~~e~~~~ 320 (485)
T d2f2aa1 241 APVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSN 320 (485)
T ss_dssp CCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 78886453556257866878999730214768989999999999999978999999379861456788999999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~D~ll 400 (485)
T d2f2aa1 321 LSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVV 400 (485)
T ss_dssp TTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98744233110123314799999874342038899999986456532235899999999999887778999874699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~dGlPvGlQiig~~~~D~~LL~~A~~~E~~~~~~~ 480 (485)
T d2f2aa1 401 GPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHD 480 (485)
T ss_dssp EESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 57978777886544477888764008999999978992999787899988768888999999999999999996079774
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1683 ----T 1683 (1815)
Q Consensus 1683 ----~ 1683 (1815)
-
T Consensus 481 ~~p~l 485 (485)
T d2f2aa1 481 VYEKL 485 (485)
T ss_dssp TGGGC
T ss_pred CCCCC
T ss_conf 79998
|
| >d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=36699.00 Aligned_cols=1 Identities=0% Similarity=-0.794 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~R~~Gvll~~~SLps~~GIGDfG~~a~~~id~~a~~G~~~~QllPl~~t~~~~~~SPYsp~S~falNPlyIdle~L~e~g 80 (485)
T d1tz7a1 1 MRLAGILLHVTSLPSPYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLIDPEELLEED 80 (485)
T ss_dssp CCEEEEECCGGGSCCSSSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCCGGGSCTHHHHHTT
T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHCCHHHCCHHHHHCCC
T ss_conf 97511454653369999887779999999999998299989866998999999988968401111398775999851488
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~l~~~~l~~~~~~~vdy~~v~~~K~~~L~~a~~~f~~~~~f~~F~~~~~~wL~~yAlF~aL~e~~~~~W~~Wp~~~r~~~ 160 (485)
T d1tz7a1 81 LIKERDLKRFPLGEALYEVVYEYKKELLEKAFKNFRRFELLEDFLKEHSYWLRDYALYMAIKEEEGKEWYEWDEELKRRE 160 (485)
T ss_dssp SSCGGGCCCCCSCSCCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCGGGSCHHHHTTC
T ss_pred CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
T ss_conf 77977785488642207999999999999998650308999999998026899999999999861898557984550445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~a~~~gI~L~gDLpigv~~dsaDvW~~~~lF~l~~~~~~~~~~GaP 240 (485)
T d1tz7a1 161 KEALKRVLNKLKGRFYFHVFVQFVFFKQWEKLRRYARERGISIVGDLPMYPSYSSADVWTNPELFKLDGDLKPLFVAGVP 240 (485)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECSSCCSSSHHHHHCGGGBCBCTTSCBSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCHHHHHCCCCCCCCEEECCC
T ss_conf 89999999987999999999999999999999999996398266404665799716543187876337766864010589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 PD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl~~~~~~~d~lRIDH~~Gf~r~W~iP~g~~~a~~G~~v~~p~~~l~~~ 320 (485)
T d1tz7a1 241 PDFFSKTGQLWGNPVYNWEEHEKEGFRWWIRRVLHNLKLFDFLRLDHFRGFEAYWEVPYGEETAVNGRWVKAPGKTLFKK 320 (485)
T ss_dssp CCSSSSSCEEEEEECBCHHHHHHTTTHHHHHHHHHHHTTCSEEEETTGGGGTEEEEEETTCSSSTTCEEEECCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98777243568999969899731382899999999987446588887999888630657888855563345579999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 l~~~~~~~~iigEDLG~vp~~vr~~l~~~gi~g~~Vl~f~~~~~~~~~~p~~~~~~~v~~~gTHD~~t~~gw~~~~~~~~ 400 (485)
T d1tz7a1 321 LLSYFPKNPFIAEDLGFITDEVRYLRETFKIPGSRVIEFAFYDKESEHLPHNVEENNVYYTSTHDLPPIRGWFENLGEES 400 (485)
T ss_dssp HHHHSTTCCEEECCCSSCCHHHHHHHHHTTCCEEEEGGGTTSSTTCTTSGGGCCSSEEEESCCTTSCCHHHHHHTCCHHH
T ss_pred HHHHCCCCCEECCCHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHCEEECCCCCCHHHHHHHHCCCHHH
T ss_conf 99974788241243533687899999981799957888424677788786646710066416777556999996699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 r~~~~~~l~~~~~~~~~~~~~~r~~~~s~s~l~i~~~qDll~l~~~~r~N~PGt~~~NW~~Rl~~~~~~~~~~~~~l~~~ 480 (485)
T d1tz7a1 401 RKRLFEYLGREIKEEKVNEELIRLVLISRAKFAIIQMQDLLNLGNEARMNYPGRPFGNWRWRIKEDYTQKKEFIKKLLGI 480 (485)
T ss_dssp HHHHHHHHTSCCCGGGHHHHHHHHHHHSCCSEEEEEHHHHTTCCGGGCCCCTTCCSSCSCCCCCSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999983887782479999999997084625111099873589756787997999975323895644349999999999
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1683 ----T 1683 (1815)
Q Consensus 1683 ----~ 1683 (1815)
.
T Consensus 481 ~gR~~ 485 (485)
T d1tz7a1 481 YGREV 485 (485)
T ss_dssp TTCCC
T ss_pred HCCCC
T ss_conf 78899
|
| >d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Glutamyl-tRNA(Gln) amidotransferase subunit A species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=36696.79 Aligned_cols=1 Identities=0% Similarity=-1.192 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD 80 (485)
T d2f2aa1 1 MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKD 80 (485)
T ss_dssp CCSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEET
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 99857899999999985999899999999999998699741999949999999999999999779999981768698885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~v~g~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaa 160 (485)
T d2f2aa1 81 NIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA 160 (485)
T ss_dssp TBCBTTBCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHH
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 60668972577584330687542101001100356530022223332143456675446767887765556776654226
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 avA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~ 240 (485)
T d2f2aa1 161 AVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTS 240 (485)
T ss_dssp HHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTS
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 67754676577517884222227985954554899977899988876667832514498999999986100356554456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~i~~a~~~a~~~L~~~G~~v~ev~lp~~~~~~~~~~~~~~~e~~~~ 320 (485)
T d2f2aa1 241 APVDDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSN 320 (485)
T ss_dssp CCCCCCCCSTTTTCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 78886453556257866878999730214768989999999999999978999999379861456788999999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~D~ll 400 (485)
T d2f2aa1 321 LSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVV 400 (485)
T ss_dssp TTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98744233110123314799999874342038899999986456532235899999999999887778999874699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~dGlPvGlQiig~~~~D~~LL~~A~~~E~~~~~~~ 480 (485)
T d2f2aa1 401 GPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHD 480 (485)
T ss_dssp EESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHSCCTT
T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 57978777886544477888764008999999978992999787899988768888999999999999999996079774
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1717 ----A 1717 (1815)
Q Consensus 1717 ----~ 1717 (1815)
-
T Consensus 481 ~~p~l 485 (485)
T d2f2aa1 481 VYEKL 485 (485)
T ss_dssp TGGGC
T ss_pred CCCCC
T ss_conf 79998
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=36697.03 Aligned_cols=1 Identities=0% Similarity=-0.794 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~~~~~~~~~~~~~p~~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~L 80 (485)
T d1w36b1 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (485)
T ss_dssp CCSSCEECCGGGCCCSSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 97321135866689999968997184488999999999998617543223479982528676417999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~I~Tihsf~~~ilr~~~~e~g~~~~~~l~~~~~~l~ 160 (485)
T d1w36b1 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR 160 (485)
T ss_dssp HHHHHHHHSSCCCSHHHHHHHHHCSCHHHHHHHHHHHHHHGGGCSEEEHHHHHHHHHHHTHHHHTCCSSCEECCCCHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCHHHHCCCCCCCCCCHHHHHH
T ss_conf 99986200234333679988752111899999999988752124210343999987521578638994334121489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (485)
T d1w36b1 161 YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 (485)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSHHHHHHHHTTTTSSSCCEEESCCCTTCCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998767765210269999999985058899999999986140233205761257999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (485)
T d1w36b1 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP 320 (485)
T ss_dssp SCCCCCCCSSSCSTHHHHHHHHHTCCSSCCCSCCCCCCTTSSHHHHHC----------------CCCCSCTHHHHHTTSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998637315443044367788999999861232224389999999998888876312115556999999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~y~~~k~~~~~lDf~Dl~~~~~~~l~~~~~~~~~~~l~~~~~~ilVDEfQDts~~Q~~ll~~L 400 (485)
T d1w36b1 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 (485)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTTHHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 87888899999999999999999981886528899998876530328999999723478687112012799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~~~~~~~~l~~VGD~kQSIY~FRgad~~~f~~~~~~~~~~~~L~~nyRS~~~Ii~~~N~~f~~~~~~~~~~~~~~~p~~~ 480 (485)
T d1w36b1 401 WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 (485)
T ss_dssp HTTCTTCEEEEEECGGGCCCGGGTCCHHHHHHHHHHCCCEEECCEETTSCHHHHHHHHHHHHSSSSTTSSTTSCCCCCEE
T ss_pred HHCCCCCEEEEEECCCCHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 80799986999846710014566889799998775558767798999982999999999996497544446899678888
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1683 ----T 1683 (1815)
Q Consensus 1683 ----~ 1683 (1815)
.
T Consensus 481 ~~~~~ 485 (485)
T d1w36b1 481 AGKNQ 485 (485)
T ss_dssp CGGGT
T ss_pred CCCCC
T ss_conf 99998
|
| >d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Arylsulfatase domain: Arylsulfatase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=36695.98 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 k~PNIl~I~~Dd~~~~~lg~yG~~~~~TPnlD~LA~~G~~F~nay~~~p~C~PSR~sllTG~yp~~~G~~~~~~~~~~~~ 80 (485)
T d1auka_ 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLGTPSRAALLTGRLPVRMGMYPGVLVPSSRG 80 (485)
T ss_dssp CCCEEEEEEESSCCTTTSGGGTCSSCCCHHHHHHHHTSEEESSEECSSSSHHHHHHHHHHSSCGGGGTCCSSCCCTTBSC
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCC
T ss_conf 98859999865899773364849999898999999708243386779976689999999885878849857765876667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~l~~~~~tl~~~Lk~~GY~T~~~GK~H~~~~~~~~~~p~~~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
T d1auka_ 81 GLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVP 160 (485)
T ss_dssp BSCTTSCCHHHHHHTTTCEEEEEECCCSBCCGGGTTSGGGGTCSEEEECSSCTTSSBCTTSEEETTTEECTTCBSCSSCC
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88823163999998618763435764468886678886447864213656667667655644578665444544345563
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~i 240 (485)
T d1auka_ 161 IPLLANLSVEAQPPWLPGLEARYMAFAHDLMADAQRQDRPFFLYYASHHTHYPQFSGQSFAERSGRGPFGDSLMELDAAV 240 (485)
T ss_dssp CCEEETTEEEEBSCCGGGHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSSSCCCCTTTTTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 22220124335677666505778888899887642122111122210123321125643222112341023457766513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 G~il~~Lk~~gl~dnTiIIftSDHG~~~~~~~~~g~~~~~~~~k~~~~e~~~~vP~ii~~P~~~~~~~~~~~v~~vDi~P 320 (485)
T d1auka_ 241 GTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGGVREPALAFWPGHIAPGVTHELASSLDLLP 320 (485)
T ss_dssp HHHHHHHHHTTCGGGEEEEEEESSCCCGGGGGGSCCCTTSCCCTTSSSHHHHBCCCEEECTTTSCSEEECSCEEGGGHHH
T ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 51889999749865748999507765533333256433333334441001433222221222346652101000235665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 Tildlagi~~p~~~~dG~Sl~p~l~g~~~~~r~~~~~~~~~~~~~~~~~air~~~~K~i~~~~~~~~~~~~~~~~~~~~~ 400 (485)
T d1auka_ 321 TLAALAGAPLPNVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRTGKYKAHFFTQGSAHSDTTADPACHASS 400 (485)
T ss_dssp HHHHHHTCCCCSSCCSCCCCHHHHHTSSCCCCCEEEECCSSCCTTTCCSEEEETTEEEEEEECCCGGGTTSSCGGGSTTS
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 10001346543343210035576417988987431576214777587379991683058703686555555564212334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~~~~~~~~eLyDl~~DP~E~~NL~~~~a~~~pe~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 480 (485)
T d1auka_ 401 SLTAHEPPLLYDLSKDPGENYNLLGGVAGATPEVLQALKQLQLLKAQLDAAVTFGPSQVARGEDPALQICCHPGCTPRPA 480 (485)
T ss_dssp CCEEEEEEEEEETTTCTTCCCCTTC----CCHHHHHHHHHHHHHHHHHHHHCCCCCCSGGGCBCGGGSCCSSTTCSSTTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45679968054076360225325777256799999999999999998627577785444667996023378989878987
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1683 ----T 1683 (1815)
Q Consensus 1683 ----~ 1683 (1815)
+
T Consensus 481 ~~~~~ 485 (485)
T d1auka_ 481 CCHCP 485 (485)
T ss_dssp TCCBC
T ss_pred CCCCC
T ss_conf 88997
|
| >d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Amylomaltase MalQ species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=36695.46 Aligned_cols=1 Identities=0% Similarity=-0.760 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~R~~Gvll~~~SLps~~GIGDfG~~a~~~id~~a~~G~~~~QllPl~~t~~~~~~SPYsp~S~falNPlyIdle~L~e~g 80 (485)
T d1tz7a1 1 MRLAGILLHVTSLPSPYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLIDPEELLEED 80 (485)
T ss_dssp CCEEEEECCGGGSCCSSSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCCGGGTTCTTSCSCSSSCCGGGSCTHHHHHTT
T ss_pred CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHCCHHHCCHHHHHCCC
T ss_conf 97511454653369999887779999999999998299989866998999999988968401111398775999851488
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~l~~~~l~~~~~~~vdy~~v~~~K~~~L~~a~~~f~~~~~f~~F~~~~~~wL~~yAlF~aL~e~~~~~W~~Wp~~~r~~~ 160 (485)
T d1tz7a1 81 LIKERDLKRFPLGEALYEVVYEYKKELLEKAFKNFRRFELLEDFLKEHSYWLRDYALYMAIKEEEGKEWYEWDEELKRRE 160 (485)
T ss_dssp SSCGGGCCCCCSCSCCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCGGGSCHHHHTTC
T ss_pred CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
T ss_conf 77977785488642207999999999999998650308999999998026899999999999861898557984550445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~a~~~gI~L~gDLpigv~~dsaDvW~~~~lF~l~~~~~~~~~~GaP 240 (485)
T d1tz7a1 161 KEALKRVLNKLKGRFYFHVFVQFVFFKQWEKLRRYARERGISIVGDLPMYPSYSSADVWTNPELFKLDGDLKPLFVAGVP 240 (485)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECSSCCSSSHHHHHCGGGBCBCTTSCBSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCHHHHHCCCCCCCCEEECCC
T ss_conf 89999999987999999999999999999999999996398266404665799716543187876337766864010589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 PD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl~~~~~~~d~lRIDH~~Gf~r~W~iP~g~~~a~~G~~v~~p~~~l~~~ 320 (485)
T d1tz7a1 241 PDFFSKTGQLWGNPVYNWEEHEKEGFRWWIRRVLHNLKLFDFLRLDHFRGFEAYWEVPYGEETAVNGRWVKAPGKTLFKK 320 (485)
T ss_dssp CCSSSSSCEEEEEECBCHHHHHHTTTHHHHHHHHHHHTTCSEEEETTGGGGTEEEEEETTCSSSTTCEEEECCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98777243568999969899731382899999999987446588887999888630657888855563345579999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~~~~~~~~iigEDLG~vp~~vr~~l~~~gi~g~~Vl~f~~~~~~~~~~p~~~~~~~v~~~gTHD~~t~~gw~~~~~~~~ 400 (485)
T d1tz7a1 321 LLSYFPKNPFIAEDLGFITDEVRYLRETFKIPGSRVIEFAFYDKESEHLPHNVEENNVYYTSTHDLPPIRGWFENLGEES 400 (485)
T ss_dssp HHHHSTTCCEEECCCSSCCHHHHHHHHHTTCCEEEEGGGTTSSTTCTTSGGGCCSSEEEESCCTTSCCHHHHHHTCCHHH
T ss_pred HHHHCCCCCEECCCHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHCEEECCCCCCHHHHHHHHCCCHHH
T ss_conf 99974788241243533687899999981799957888424677788786646710066416777556999996699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 r~~~~~~l~~~~~~~~~~~~~~r~~~~s~s~l~i~~~qDll~l~~~~r~N~PGt~~~NW~~Rl~~~~~~~~~~~~~l~~~ 480 (485)
T d1tz7a1 401 RKRLFEYLGREIKEEKVNEELIRLVLISRAKFAIIQMQDLLNLGNEARMNYPGRPFGNWRWRIKEDYTQKKEFIKKLLGI 480 (485)
T ss_dssp HHHHHHHHTSCCCGGGHHHHHHHHHHHSCCSEEEEEHHHHTTCCGGGCCCCTTCCSSCSCCCCCSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999983887782479999999997084625111099873589756787997999975323895644349999999999
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1717 ----A 1717 (1815)
Q Consensus 1717 ----~ 1717 (1815)
-
T Consensus 481 ~gR~~ 485 (485)
T d1tz7a1 481 YGREV 485 (485)
T ss_dssp TTCCC
T ss_pred HCCCC
T ss_conf 78899
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=36695.39 Aligned_cols=1 Identities=0% Similarity=-0.860 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~p~~g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~L 80 (485)
T d1w36b1 1 MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (485)
T ss_dssp CCSSCEECCGGGCCCSSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHH
T ss_conf 97321135866689999968997184488999999999998617543223479982528676417999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~I~Tihsf~~~ilr~~~~e~g~~~~~~l~~~~~~l~ 160 (485)
T d1w36b1 81 HELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR 160 (485)
T ss_dssp HHHHHHHHSSCCCSHHHHHHHHHCSCHHHHHHHHHHHHHHGGGCSEEEHHHHHHHHHHHTHHHHTCCSSCEECCCCHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCHHHHCCCCCCCCCCHHHHHH
T ss_conf 99986200234333679988752111899999999988752124210343999987521578638994334121489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (485)
T d1w36b1 161 YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAV 240 (485)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSHHHHHHHHTTTTSSSCCEEESCCCTTCCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998767765210269999999985058899999999986140233205761257999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (485)
T d1w36b1 241 GELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEP 320 (485)
T ss_dssp SCCCCCCCSSSCSTHHHHHHHHHTCCSSCCCSCCCCCCTTSSHHHHHC----------------CCCCSCTHHHHHTTSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998637315443044367788999999861232224389999999998888876312115556999999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~y~~~k~~~~~lDf~Dl~~~~~~~l~~~~~~~~~~~l~~~~~~ilVDEfQDts~~Q~~ll~~L 400 (485)
T d1w36b1 321 LSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400 (485)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTTHHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 87888899999999999999999981886528899998876530328999999723478687112012799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~l~~VGD~kQSIY~FRgad~~~f~~~~~~~~~~~~L~~nyRS~~~Ii~~~N~~f~~~~~~~~~~~~~~~p~~~ 480 (485)
T d1w36b1 401 WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS 480 (485)
T ss_dssp HTTCTTCEEEEEECGGGCCCGGGTCCHHHHHHHHHHCCCEEECCEETTSCHHHHHHHHHHHHSSSSTTSSTTSCCCCCEE
T ss_pred HHCCCCCEEEEEECCCCHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 80799986999846710014566889799998775558767798999982999999999996497544446899678888
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1717 ----A 1717 (1815)
Q Consensus 1717 ----~ 1717 (1815)
+
T Consensus 481 ~~~~~ 485 (485)
T d1w36b1 481 AGKNQ 485 (485)
T ss_dssp CGGGT
T ss_pred CCCCC
T ss_conf 99998
|
| >d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Arylsulfatase domain: Arylsulfatase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=36693.14 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 k~PNIl~I~~Dd~~~~~lg~yG~~~~~TPnlD~LA~~G~~F~nay~~~p~C~PSR~sllTG~yp~~~G~~~~~~~~~~~~ 80 (485)
T d1auka_ 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLGTPSRAALLTGRLPVRMGMYPGVLVPSSRG 80 (485)
T ss_dssp CCCEEEEEEESSCCTTTSGGGTCSSCCCHHHHHHHHTSEEESSEECSSSSHHHHHHHHHHSSCGGGGTCCSSCCCTTBSC
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCC
T ss_conf 98859999865899773364849999898999999708243386779976689999999885878849857765876667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~l~~~~~tl~~~Lk~~GY~T~~~GK~H~~~~~~~~~~p~~~Gfd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
T d1auka_ 81 GLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVP 160 (485)
T ss_dssp BSCTTSCCHHHHHHTTTCEEEEEECCCSBCCGGGTTSGGGGTCSEEEECSSCTTSSBCTTSEEETTTEECTTCBSCSSCC
T ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88823163999998618763435764468886678886447864213656667667655644578665444544345563
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~~D~~i 240 (485)
T d1auka_ 161 IPLLANLSVEAQPPWLPGLEARYMAFAHDLMADAQRQDRPFFLYYASHHTHYPQFSGQSFAERSGRGPFGDSLMELDAAV 240 (485)
T ss_dssp CCEEETTEEEEBSCCGGGHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSSSCCCCTTTTTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 22220124335677666505778888899887642122111122210123321125643222112341023457766513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 G~il~~Lk~~gl~dnTiIIftSDHG~~~~~~~~~g~~~~~~~~k~~~~e~~~~vP~ii~~P~~~~~~~~~~~v~~vDi~P 320 (485)
T d1auka_ 241 GTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGGVREPALAFWPGHIAPGVTHELASSLDLLP 320 (485)
T ss_dssp HHHHHHHHHTTCGGGEEEEEEESSCCCGGGGGGSCCCTTSCCCTTSSSHHHHBCCCEEECTTTSCSEEECSCEEGGGHHH
T ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 51889999749865748999507765533333256433333334441001433222221222346652101000235665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Tildlagi~~p~~~~dG~Sl~p~l~g~~~~~r~~~~~~~~~~~~~~~~~air~~~~K~i~~~~~~~~~~~~~~~~~~~~~ 400 (485)
T d1auka_ 321 TLAALAGAPLPNVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRTGKYKAHFFTQGSAHSDTTADPACHASS 400 (485)
T ss_dssp HHHHHHTCCCCSSCCSCCCCHHHHHTSSCCCCCEEEECCSSCCTTTCCSEEEETTEEEEEEECCCGGGTTSSCGGGSTTS
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 10001346543343210035576417988987431576214777587379991683058703686555555564212334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~eLyDl~~DP~E~~NL~~~~a~~~pe~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~ 480 (485)
T d1auka_ 401 SLTAHEPPLLYDLSKDPGENYNLLGGVAGATPEVLQALKQLQLLKAQLDAAVTFGPSQVARGEDPALQICCHPGCTPRPA 480 (485)
T ss_dssp CCEEEEEEEEEETTTCTTCCCCTTC----CCHHHHHHHHHHHHHHHHHHHHCCCCCCSGGGCBCGGGSCCSSTTCSSTTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45679968054076360225325777256799999999999999998627577785444667996023378989878987
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1717 ----A 1717 (1815)
Q Consensus 1717 ----~ 1717 (1815)
+
T Consensus 481 ~~~~~ 485 (485)
T d1auka_ 481 CCHCP 485 (485)
T ss_dssp TCCBC
T ss_pred CCCCC
T ss_conf 88997
|
| >d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glycosyltransferase family 36 C-terminal domain domain: Lactobacillus maltose phosphorylase, central domain species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=0 Score=36693.02 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 d~~~~~~~~~~~~~~~a~~~~y~~L~~~h~~~w~~~~~r~~i~l~~d~~l~~~~~~~~Y~l~~s~~~~~~~~~~~~~Gl~ 80 (485)
T d1h54a1 1 DTQESLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDDESQQGIRFNLFQLFSTYYGEDARLNIGPKGFT 80 (485)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCEEEESCHHHHHHHHHHHHHHHHHCCSSCTTCCCCTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 93578999999999999867999999999999999748755990899899999999999999807998999777898888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~G~~~wd~~~~~~p~~l~~~~pe~~~~~~~~~~~~l~~ar~~A~~~g~~G~~~p~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
T d1h54a1 81 GEKYGGATYWDTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLKGALFPMVTFDGIECHNEWEITFEEIHR 160 (485)
T ss_dssp CCTTCSSBCTHHHHTHHHHHHHHSCHHHHHHHHHHHHTTHHHHHHHHHTTTCCSCCCCSSBSSSSBCCCCHHHHTTCTHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99998864240789889999970289999999999999999999999983437874540578998878899986100123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~wi~~~~~~yy~~TgD~~~L~e~~~pll~e~a~F~~~~l~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~ 240 (485)
T d1h54a1 161 NGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADRVHFSKRNNQYMIHGVTGADEYENNVDNNWDTNMLAQWTLKY 240 (485)
T ss_dssp HHHHHHHHHHHHHHHCCCTTTTTHHHHHHHHHHHHHHHHCEEETTTTEEECCSBCCSSTTSCSBSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHEEEECCCCEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHH
T ss_conf 55899999999986381999975130879999999984118958999583588885223566667886434389999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 a~~~~~~l~~~~~~~l~~~~~~~~~w~~~~~~L~~p~~~~~g~~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (485)
T d1h54a1 241 TLEILGKVDQDTAKQLDVSDEEKTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRS 320 (485)
T ss_dssp HHHHHTTSCHHHHHHHCCCHHHHHHHHHHHHTBCCCEETTTTEECSSTTGGGSCCCCGGGSCGGGCSGGGTSCHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 99999986899999838997899999999964788977677860364665001026423368646871444264523475
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~a~~~a~lg~~~~A~~~~~~~~~~~l~~~~~~~~~ 400 (485)
T d1h54a1 321 PYIKQGDVLQGIWDFIDDYTPEQKKANFDFYEPLTVHESSLSPAIHSVLAADLHYEDKAVELYSRTARLDLDNYNNDTTD 400 (485)
T ss_dssp SCBSSCSHHHHHHHTTTSSCHHHHHHHHHHHGGGBCCCSTTHHHHHHHHHHHTTCHHHHHHHHTTTTTTTTTTTTSCGGG
T ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf 43466888851355777699999999999986157899866899999999760657899999998610164543999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 g~~~~~~ag~~~~l~~g~~Glq~~~~~l~l~PalP~~W~~~~~~~~~rG~~~~i~v~~~~~~~~~~~g~p~~v~~~G~~~ 480 (485)
T d1h54a1 401 GLHITSMTGAWIAVVQGFAGMRVRDGQLHYAPFLPKTWTSYTFRQVFRDRLIEVSVHADGPHFKLLSGEPLTIDVAGAAA 480 (485)
T ss_dssp CCCGGGGGHHHHHHHTTTSCCEEETTEEEECCCCCTTCSEEEEEEEETTEEEEEEEETTEEEEEEEESSCEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEECCEEEEECCCCCCCCCCEEEEEECCEEEEEEEECCEEEEEECCCCEEEEEECCEEE
T ss_conf 73265699999999997455454689899968899877721799999995999999899589997169907999999998
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1683 ----T 1683 (1815)
Q Consensus 1683 ----~ 1683 (1815)
.
T Consensus 481 ~~~~~ 485 (485)
T d1h54a1 481 AAAAA 485 (485)
T ss_dssp EECCC
T ss_pred EECCC
T ss_conf 75279
|
| >d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glycosyltransferase family 36 C-terminal domain domain: Lactobacillus maltose phosphorylase, central domain species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=0 Score=36689.74 Aligned_cols=1 Identities=100% Similarity=0.570 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 d~~~~~~~~~~~~~~~a~~~~y~~L~~~h~~~w~~~~~r~~i~l~~d~~l~~~~~~~~Y~l~~s~~~~~~~~~~~~~Gl~ 80 (485)
T d1h54a1 1 DTQESLTAAMHQLSDKVAQSSYEDLLNAHTAIWAQRWEKSDVVIKGDDESQQGIRFNLFQLFSTYYGEDARLNIGPKGFT 80 (485)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCEEEESCHHHHHHHHHHHHHHHHHCCSSCTTCCCCTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 93578999999999999867999999999999999748755990899899999999999999807998999777898888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~G~~~wd~~~~~~p~~l~~~~pe~~~~~~~~~~~~l~~ar~~A~~~g~~G~~~p~~~~~~~~~~~~~~~~~~~~~~ 160 (485)
T d1h54a1 81 GEKYGGATYWDTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLKGALFPMVTFDGIECHNEWEITFEEIHR 160 (485)
T ss_dssp CCTTCSSBCTHHHHTHHHHHHHHSCHHHHHHHHHHHHTTHHHHHHHHHTTTCCSCCCCSSBSSSSBCCCCHHHHTTCTHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99998864240789889999970289999999999999999999999983437874540578998878899986100123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~wi~~~~~~yy~~TgD~~~L~e~~~pll~e~a~F~~~~l~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~ 240 (485)
T d1h54a1 161 NGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADRVHFSKRNNQYMIHGVTGADEYENNVDNNWDTNMLAQWTLKY 240 (485)
T ss_dssp HHHHHHHHHHHHHHHCCCTTTTTHHHHHHHHHHHHHHHHCEEETTTTEEECCSBCCSSTTSCSBSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHEEEECCCCEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHH
T ss_conf 55899999999986381999975130879999999984118958999583588885223566667886434389999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 a~~~~~~l~~~~~~~l~~~~~~~~~w~~~~~~L~~p~~~~~g~~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (485)
T d1h54a1 241 TLEILGKVDQDTAKQLDVSDEEKTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRS 320 (485)
T ss_dssp HHHHHTTSCHHHHHHHCCCHHHHHHHHHHHHTBCCCEETTTTEECSSTTGGGSCCCCGGGSCGGGCSGGGTSCHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCC
T ss_conf 99999986899999838997899999999964788977677860364665001026423368646871444264523475
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~s~~~~a~~~a~lg~~~~A~~~~~~~~~~~l~~~~~~~~~ 400 (485)
T d1h54a1 321 PYIKQGDVLQGIWDFIDDYTPEQKKANFDFYEPLTVHESSLSPAIHSVLAADLHYEDKAVELYSRTARLDLDNYNNDTTD 400 (485)
T ss_dssp SCBSSCSHHHHHHHTTTSSCHHHHHHHHHHHGGGBCCCSTTHHHHHHHHHHHTTCHHHHHHHHTTTTTTTTTTTTSCGGG
T ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf 43466888851355777699999999999986157899866899999999760657899999998610164543999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 g~~~~~~ag~~~~l~~g~~Glq~~~~~l~l~PalP~~W~~~~~~~~~rG~~~~i~v~~~~~~~~~~~g~p~~v~~~G~~~ 480 (485)
T d1h54a1 401 GLHITSMTGAWIAVVQGFAGMRVRDGQLHYAPFLPKTWTSYTFRQVFRDRLIEVSVHADGPHFKLLSGEPLTIDVAGAAA 480 (485)
T ss_dssp CCCGGGGGHHHHHHHTTTSCCEEETTEEEECCCCCTTCSEEEEEEEETTEEEEEEEETTEEEEEEEESSCEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEECCEEEEECCCCCCCCCCEEEEEECCEEEEEEEECCEEEEEECCCCEEEEEECCEEE
T ss_conf 73265699999999997455454689899968899877721799999995999999899589997169907999999998
Q ss_pred ----C
Q ss_conf ----9
Q 000235 1717 ----A 1717 (1815)
Q Consensus 1717 ----~ 1717 (1815)
.
T Consensus 481 ~~~~~ 485 (485)
T d1h54a1 481 AAAAA 485 (485)
T ss_dssp EECCC
T ss_pred EECCC
T ss_conf 75279
|
| >d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Pseudomonas syringae [TaxId: 317]
Probab=100.00 E-value=0 Score=36624.53 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
+
T Consensus 1 t~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~l~hf~reripeR~vHAKG~ga~G~F~v~~d~~~~t~a~~f~~G 80 (484)
T d1m7sa_ 1 TDTLTRDNGAVVGDNQNSQTAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGEFTASADISDLSKATVFKSG 80 (484)
T ss_dssp CCCCBCTTSCBCSCSSSCCEESTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCC
T ss_conf 98546799976579852311589896057778999998750455575534547704369999988763664311221799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~Pv~vRFSt~~G~~~s~D~~rd~RG~AiKf~~~eg~~DlV~nn~PvFfird~~~F~~fi~a~k~~p~t~~~d~~~~~~ 160 (484)
T d1m7sa_ 81 EKTPVFVRFSSVVHGNHSPETLRDPHGFATKFYTADGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFD 160 (484)
T ss_dssp CEEEEEEEEECSSSCTTCCTTSCSCCEEEEEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTSSCCHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 87679995546888899875456675158988748986014132687420589999999999707687668997677778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 f~~~~Pes~~~~~~l~s~~~~P~Sy~~~~~~g~htf~~~n~~G~~~~vK~~~~P~~g~~~l~~eea~~l~g~dpd~l~~d 240 (484)
T d1m7sa_ 161 FFSHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAYKLVNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQSKDYSHLTND 240 (484)
T ss_dssp HHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHHHCSCHHHHH
T ss_pred HHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHH
T ss_conf 88619667999999845689988755567655103887736797888999889589877799999997517894078899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 L~~~i~~g~~~~w~l~vQl~~~~d~~~~~~~i~D~Tk~Wpe~P~~~vG~LtL~~~~~n~fae~Eq~aF~P~~lv~GI~~S 320 (484)
T d1m7sa_ 241 LVGAIKKGDFPKWDLYVQVLKPEELAKFDFDPLDATKIWPDVPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPS 320 (484)
T ss_dssp HHHHHHTTCCCEEEEEEEEECGGGGGGSSSCTTCTTCCCSSSCEEEEEEEEEEEECSCHHHHTTTCCCCTTCCCTTEEEC
T ss_pred HHHHHHCCCCCEEEEEEEEECHHHHHCCCCCCCCCCEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999749986168999970676763379997678727367860788899972387640367688886512576753379
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~Dp~Lq~R~faY~dt~r~R~g~n~~qlPvN~P~~~~~~~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~g~ 400 (484)
T d1m7sa_ 321 EDRLLQGRVFSYADTQMYRLGANGLSLPVNQPKVAVNNGNQDGALNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGT 400 (484)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCTTGGGSGGGCCSSCCCSSCCCCTTCCCCCCCSCCSSSCSSSCCCCCGGGCCCCCBCCSB
T ss_pred CCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99212110010577754137875012787777776557566786545788998886798789986677878887764504
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~~~~~~~~~ddf~Q~~~l~r~~~~~e~~~l~~n~~~~l~~~~~~i~~~~~~~~~~~d~~~g~rva~~~~~~~~~~~~~~~ 480 (484)
T d1m7sa_ 401 TQQAKITREQNFKQAGDLYRSYSAKEKTDLVQKFGESLADTLTESKNIMLSYLYKEDPNYGTRVAEVAKGDLSKVKSLAA 480 (484)
T ss_dssp EECCCCSCCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 88657798877600269988499999999999999986189999999999999961999999999982997566677654
Q ss_pred ---C
Q ss_conf ---9
Q 000235 1683 ---T 1683 (1815)
Q Consensus 1683 ---~ 1683 (1815)
.
T Consensus 481 ~~~~ 484 (484)
T d1m7sa_ 481 SLKD 484 (484)
T ss_dssp TCCC
T ss_pred HCCC
T ss_conf 3079
|
| >d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Pseudomonas syringae [TaxId: 317]
Probab=100.00 E-value=0 Score=36621.37 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 t~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~l~hf~reripeR~vHAKG~ga~G~F~v~~d~~~~t~a~~f~~G 80 (484)
T d1m7sa_ 1 TDTLTRDNGAVVGDNQNSQTAGAQGPVLLQDVQLLQKLQRFDRERIPERVVHARGTGVKGEFTASADISDLSKATVFKSG 80 (484)
T ss_dssp CCCCBCTTSCBCSCSSSCCEESTTSCBBTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCC
T ss_conf 98546799976579852311589896057778999998750455575534547704369999988763664311221799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~Pv~vRFSt~~G~~~s~D~~rd~RG~AiKf~~~eg~~DlV~nn~PvFfird~~~F~~fi~a~k~~p~t~~~d~~~~~~ 160 (484)
T d1m7sa_ 81 EKTPVFVRFSSVVHGNHSPETLRDPHGFATKFYTADGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDNDSRRFD 160 (484)
T ss_dssp CEEEEEEEEECSSSCTTCCTTSCSCCEEEEEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSCCTTTSSCCHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 87679995546888899875456675158988748986014132687420589999999999707687668997677778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 f~~~~Pes~~~~~~l~s~~~~P~Sy~~~~~~g~htf~~~n~~G~~~~vK~~~~P~~g~~~l~~eea~~l~g~dpd~l~~d 240 (484)
T d1m7sa_ 161 FFSHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAYKLVNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQSKDYSHLTND 240 (484)
T ss_dssp HHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTSCEEEEEEEEEETTCCCBCCHHHHHHHHHHCSCHHHHH
T ss_pred HHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHHH
T ss_conf 88619667999999845689988755567655103887736797888999889589877799999997517894078899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 L~~~i~~g~~~~w~l~vQl~~~~d~~~~~~~i~D~Tk~Wpe~P~~~vG~LtL~~~~~n~fae~Eq~aF~P~~lv~GI~~S 320 (484)
T d1m7sa_ 241 LVGAIKKGDFPKWDLYVQVLKPEELAKFDFDPLDATKIWPDVPEKKIGQMVLNKNVDNFFQETEQVAMAPANLVPGIEPS 320 (484)
T ss_dssp HHHHHHTTCCCEEEEEEEEECGGGGGGSSSCTTCTTCCCSSSCEEEEEEEEEEEECSCHHHHTTTCCCCTTCCCTTEEEC
T ss_pred HHHHHHCCCCCEEEEEEEEECHHHHHCCCCCCCCCCEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999749986168999970676763379997678727367860788899972387640367688886512576753379
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~Dp~Lq~R~faY~dt~r~R~g~n~~qlPvN~P~~~~~~~~rDG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~g~ 400 (484)
T d1m7sa_ 321 EDRLLQGRVFSYADTQMYRLGANGLSLPVNQPKVAVNNGNQDGALNTGHTTSGVNYEPSRLEPRPADDKARYSELPLSGT 400 (484)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCTTGGGSGGGCCSSCCCSSCCCCTTCCCCCCCSCCSSSCSSSCCCCCGGGCCCCCBCCSB
T ss_pred CCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99212110010577754137875012787777776557566786545788998886798789986677878887764504
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~ddf~Q~~~l~r~~~~~e~~~l~~n~~~~l~~~~~~i~~~~~~~~~~~d~~~g~rva~~~~~~~~~~~~~~~ 480 (484)
T d1m7sa_ 401 TQQAKITREQNFKQAGDLYRSYSAKEKTDLVQKFGESLADTLTESKNIMLSYLYKEDPNYGTRVAEVAKGDLSKVKSLAA 480 (484)
T ss_dssp EECCCCSCCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 88657798877600269988499999999999999986189999999999999961999999999982997566677654
Q ss_pred ---C
Q ss_conf ---9
Q 000235 1717 ---A 1717 (1815)
Q Consensus 1717 ---~ 1717 (1815)
-
T Consensus 481 ~~~~ 484 (484)
T d1m7sa_ 481 SLKD 484 (484)
T ss_dssp TCCC
T ss_pred HCCC
T ss_conf 3079
|
| >d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum bicolor [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: Plant beta-glucosidase (myrosinase) species: Sorghum bicolor [TaxId: 4558]
Probab=100.00 E-value=0 Score=36619.79 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~FP~~FlwG~Atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG 80 (484)
T d1v02a_ 1 RLSPWEIPRRDWFPPSFLFGAATSAYQIEGAWNEDGKGPSTWDHFCHNFPEWIVDRSNGDVAADSYHMYAEDVRLLKEMG 80 (484)
T ss_dssp CCCGGGSCCGGGSCTTCEEEEECCHHHHCCCTTSTTCCCBHHHHHHHHCGGGSTTSCCSSSTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 98824587423699998385776177747684889987507878650398753579999755653450599999999819
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~yRfSisWsRI~P~g~~~g~~n~~gl~~Y~~~id~l~~~GI~P~vTL~Hfd~P~~l~~~~Ggw~n~~~~~~F~~Ya~~ 160 (484)
T d1v02a_ 81 MDAYRFSISWPRILPKGTLAGGINEKRVEYYNKLIDLLLENGIEPYITIFHWDTPQALVDAYGGFLDERIIKDYTDFAKV 160 (484)
T ss_dssp CSEEEEECCHHHHSTTSSSTTCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHH
T ss_pred CCEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99898447799848899878987989999999999999970776899841776510035516864687899999986678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 v~~~fgd~V~~W~T~NEP~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~a~~~~~~~~~~~~~ 240 (484)
T d1v02a_ 161 CFEKFGKTVKNWLTFNEPETFCSVSYGTGVLAPGRCSPGVSCAVPTGNSLSEPYIVAHNLLRAHAETVDIYNKYHKGADG 240 (484)
T ss_dssp HHHHHTTTCCEEEEEECHHHHHHHHHTSCCSTTCBCCTTSCSSBCSSCTTTHHHHHHHHHHHHHHHHHHHHHHHTCTTTC
T ss_pred HHHHHCCHHHCEEEECCCCEECCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99985413010488257530000255533110445573101257644437799999999999999999999997440477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~ig~~~~~~~~~p~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~p~~~~~~~~~i~~~~DFlGiNyYt 320 (484)
T d1v02a_ 241 RIGLALNVFGRVPYTNTFLDQQAQERSMDKCLGWFLEPVVRGDYPFSMRVSARDRVPYFKEKEQEKLVGSYDMIGINYYT 320 (484)
T ss_dssp EEEEEEECCEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHGGGSCCCCHHHHHHHTTCCSEEEEECCC
T ss_pred CEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCE
T ss_conf 60367403555407884688999999988776554698857888778876665158610232677762578803246651
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~W~ei~P~GL~~~L~~~~~rY~~~PI~ITENG~a~~d~ 400 (484)
T d1v02a_ 321 STFSKHIDLSPNNSPVLNTDDAYASQETKGPDGNAIGPPTGNAWINMYPKGLHDILMTMKNKYGNPPMYITENGMGDIDK 400 (484)
T ss_dssp EEEEEECCCSTTCCCCSGGGGGCEEEESBCTTSCBSSCBCSSSSCBCCTHHHHHHHHHHHHHSCCCCEEEEEECCCEECS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 58986157788766666667654432123677741378867997447769999999999987499998996898877665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSllDn~EW~~Gy~~RfGLv~VD~~~~~~R~pK~Sa~wy~ 480 (484)
T d1v02a_ 401 GDLPKPVALEDHTRLDYIQRHLSVLKQSIDLGADVRGYFAWSLLDNFEWSSGYTERFGIVYVDRENGCERTMKRSARWLQ 480 (484)
T ss_dssp SCCCHHHHHCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSBCCCCGGGGGGEECCSEEEEGGGTTEEEECHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 65677876377789999999999999999879998999666831542800124377633998188997853415999998
Q ss_pred ---C
Q ss_conf ---9
Q 000235 1683 ---T 1683 (1815)
Q Consensus 1683 ---~ 1683 (1815)
.
T Consensus 481 ~f~~ 484 (484)
T d1v02a_ 481 EFNG 484 (484)
T ss_dssp HHTC
T ss_pred HHCC
T ss_conf 7469
|
| >d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum bicolor [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: Plant beta-glucosidase (myrosinase) species: Sorghum bicolor [TaxId: 4558]
Probab=100.00 E-value=0 Score=36616.78 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~FP~~FlwG~Atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG 80 (484)
T d1v02a_ 1 RLSPWEIPRRDWFPPSFLFGAATSAYQIEGAWNEDGKGPSTWDHFCHNFPEWIVDRSNGDVAADSYHMYAEDVRLLKEMG 80 (484)
T ss_dssp CCCGGGSCCGGGSCTTCEEEEECCHHHHCCCTTSTTCCCBHHHHHHHHCGGGSTTSCCSSSTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 98824587423699998385776177747684889987507878650398753579999755653450599999999819
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~yRfSisWsRI~P~g~~~g~~n~~gl~~Y~~~id~l~~~GI~P~vTL~Hfd~P~~l~~~~Ggw~n~~~~~~F~~Ya~~ 160 (484)
T d1v02a_ 81 MDAYRFSISWPRILPKGTLAGGINEKRVEYYNKLIDLLLENGIEPYITIFHWDTPQALVDAYGGFLDERIIKDYTDFAKV 160 (484)
T ss_dssp CSEEEEECCHHHHSTTSSSTTCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHH
T ss_pred CCEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99898447799848899878987989999999999999970776899841776510035516864687899999986678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 v~~~fgd~V~~W~T~NEP~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~a~~~~~~~~~~~~~ 240 (484)
T d1v02a_ 161 CFEKFGKTVKNWLTFNEPETFCSVSYGTGVLAPGRCSPGVSCAVPTGNSLSEPYIVAHNLLRAHAETVDIYNKYHKGADG 240 (484)
T ss_dssp HHHHHTTTCCEEEEEECHHHHHHHHHTSCCSTTCBCCTTSCSSBCSSCTTTHHHHHHHHHHHHHHHHHHHHHHHTCTTTC
T ss_pred HHHHHCCHHHCEEEECCCCEECCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99985413010488257530000255533110445573101257644437799999999999999999999997440477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~ig~~~~~~~~~p~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~YP~~~~~~~~~~~p~~~~~~~~~i~~~~DFlGiNyYt 320 (484)
T d1v02a_ 241 RIGLALNVFGRVPYTNTFLDQQAQERSMDKCLGWFLEPVVRGDYPFSMRVSARDRVPYFKEKEQEKLVGSYDMIGINYYT 320 (484)
T ss_dssp EEEEEEECCEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHGGGSCCCCHHHHHHHTTCCSEEEEECCC
T ss_pred CEEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCE
T ss_conf 60367403555407884688999999988776554698857888778876665158610232677762578803246651
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~W~ei~P~GL~~~L~~~~~rY~~~PI~ITENG~a~~d~ 400 (484)
T d1v02a_ 321 STFSKHIDLSPNNSPVLNTDDAYASQETKGPDGNAIGPPTGNAWINMYPKGLHDILMTMKNKYGNPPMYITENGMGDIDK 400 (484)
T ss_dssp EEEEEECCCSTTCCCCSGGGGGCEEEESBCTTSCBSSCBCSSSSCBCCTHHHHHHHHHHHHHSCCCCEEEEEECCCEECS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 58986157788766666667654432123677741378867997447769999999999987499998996898877665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~i~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSllDn~EW~~Gy~~RfGLv~VD~~~~~~R~pK~Sa~wy~ 480 (484)
T d1v02a_ 401 GDLPKPVALEDHTRLDYIQRHLSVLKQSIDLGADVRGYFAWSLLDNFEWSSGYTERFGIVYVDRENGCERTMKRSARWLQ 480 (484)
T ss_dssp SCCCHHHHHCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSBCCCCGGGGGGEECCSEEEEGGGTTEEEECHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 65677876377789999999999999999879998999666831542800124377633998188997853415999998
Q ss_pred ---C
Q ss_conf ---9
Q 000235 1717 ---A 1717 (1815)
Q Consensus 1717 ---~ 1717 (1815)
.
T Consensus 481 ~f~~ 484 (484)
T d1v02a_ 481 EFNG 484 (484)
T ss_dssp HHTC
T ss_pred HHCC
T ss_conf 7469
|
| >d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Cobalamin (vitamin B12)-dependent enzymes family: Glutamate mutase, large subunit domain: Glutamate mutase, large subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=100.00 E-value=0 Score=36544.41 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 m~~~~k~~~~~~~~~~~~e~l~~~~~~~~~d~~e~~~~~~~~P~~~~f~~~~~~~~~~~~t~~Qp~aGf~t~ee~n~~~k 80 (483)
T d1ccwb_ 1 MELKNKKWTDEEFHKQREEVLQQWPTGKEVDLQEAVDYLKKIPAEKNFAEKLVLAKKKGITMAQPRAGVALLDEHIELLR 80 (483)
T ss_dssp CCCCSSCCCHHHHHHHHHHHGGGSGGGGGCCHHHHHHHHHTSCGGGCHHHHHHHHHHHTCCEEECCCCCSSHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 97653578878889986887516876433678877778752998665216667653069767634678898999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~L~~~Gq~gllp~~iDS~~~~~~~evgk~gv~~s~~d~~~l~nGiPl~~~~~s~tr~ii~~~~~Plq~r~gt~d~r~la~ 160 (483)
T d1ccwb_ 81 YLQDEGGADFLPSTIDAYTRQNRYDECENGIKESEKAGRSLLNGFPGVNFGVKGCRKVLEAVNLPLQARHGTPDSRLLAE 160 (483)
T ss_dssp HHHHTTCCSSEEEEBCTTGGGTCHHHHHHHHHHHHHHTSCCSSSBCHHHHHHHHHHHHHHHCSSCEEEECCCSCCHHHHH
T ss_pred HHHHCCCCCCCCCEECCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCHHHCCCCCHHHHHHH
T ss_conf 99976788821320078873534518778787536542244148882121197789887316523232048741667999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 i~la~g~~a~e~~gis~~~p~~~~~tl~~dIl~wey~~R~~~~y~e~sv~i~~e~fg~~~~~~vP~~~siais~~e~~la 240 (483)
T d1ccwb_ 161 IIHAGGWTSNEGGGISYNVPYAKNVTIEKSLLDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPPSMSNAVGITEALLA 240 (483)
T ss_dssp HHHHTTCCEEECCTTTTTTTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCTTTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99997787760478534476455876666778999999743658998625546542203024276089999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~gvk~lSf~f~~~~n~~qdiAk~rA~R~l~a~~l~~~g~~d~~~~~~~h~~~gg~p~t~~~a~~ni~~~a~~A~lgGa 320 (483)
T d1ccwb_ 241 AEQGVKNITVGYGECGNMIQDIAALRCLEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPQDESKAFGVIVTATTIAALAGA 320 (483)
T ss_dssp HHTTCCEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEECCCSCCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 98260038886316788999999999999999999997399986488999765178897567788899999999996499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 q~lht~s~dEA~~iPT~ea~~~alrttq~i~~~~~~~pl~gs~~ve~~t~~i~~ea~~ii~~I~~lG~gdl~~g~v~Aie 400 (483)
T d1ccwb_ 321 TKVIVKTPHEAIGIPTKEANAAGIKATKMALNMLEGQRMPMSKELETEMAVIKAETKCILDKMFELGKGDLAIGTVKAFE 400 (483)
T ss_dssp SEEECCCTTTTTSSCCHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 77984777786508999999999999999999727998788578999999999999999999997379747889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~G~lDiPfa~~~~n~~~~~~~rD~~G~~R~~d~gnlp~~~~~~~~~~~kl~~R~~~e~r~~~~q~~~DDi~A~~~g~l~~ 480 (483)
T d1ccwb_ 401 TGVMDIPFGPSKYNAGKMMPVRDNLGCVRYLEFGNVPFTEEIKNYNRERLQERAKFEGRDVSFQMVIDDIFAVGKGRLIG 480 (483)
T ss_dssp HTSSCCTTCCCTTSCCCCEEEECTTSCEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTSSSC
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 17776767864566178320226888314234678888768999999999998873065277888899999985786178
Q ss_pred --C
Q ss_conf --9
Q 000235 1683 --T 1683 (1815)
Q Consensus 1683 --~ 1683 (1815)
.
T Consensus 481 ~~~ 483 (483)
T d1ccwb_ 481 RPE 483 (483)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 999
|
| >d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Cobalamin (vitamin B12)-dependent enzymes family: Glutamate mutase, large subunit domain: Glutamate mutase, large subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=100.00 E-value=0 Score=36542.27 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~~k~~~~~~~~~~~~e~l~~~~~~~~~d~~e~~~~~~~~P~~~~f~~~~~~~~~~~~t~~Qp~aGf~t~ee~n~~~k 80 (483)
T d1ccwb_ 1 MELKNKKWTDEEFHKQREEVLQQWPTGKEVDLQEAVDYLKKIPAEKNFAEKLVLAKKKGITMAQPRAGVALLDEHIELLR 80 (483)
T ss_dssp CCCCSSCCCHHHHHHHHHHHGGGSGGGGGCCHHHHHHHHHTSCGGGCHHHHHHHHHHHTCCEEECCCCCSSHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 97653578878889986887516876433678877778752998665216667653069767634678898999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~L~~~Gq~gllp~~iDS~~~~~~~evgk~gv~~s~~d~~~l~nGiPl~~~~~s~tr~ii~~~~~Plq~r~gt~d~r~la~ 160 (483)
T d1ccwb_ 81 YLQDEGGADFLPSTIDAYTRQNRYDECENGIKESEKAGRSLLNGFPGVNFGVKGCRKVLEAVNLPLQARHGTPDSRLLAE 160 (483)
T ss_dssp HHHHTTCCSSEEEEBCTTGGGTCHHHHHHHHHHHHHHTSCCSSSBCHHHHHHHHHHHHHHHCSSCEEEECCCSCCHHHHH
T ss_pred HHHHCCCCCCCCCEECCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCHHHCCCCCHHHHHHH
T ss_conf 99976788821320078873534518778787536542244148882121197789887316523232048741667999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 i~la~g~~a~e~~gis~~~p~~~~~tl~~dIl~wey~~R~~~~y~e~sv~i~~e~fg~~~~~~vP~~~siais~~e~~la 240 (483)
T d1ccwb_ 161 IIHAGGWTSNEGGGISYNVPYAKNVTIEKSLLDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPPSMSNAVGITEALLA 240 (483)
T ss_dssp HHHHTTCCEEECCTTTTTTTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCTTTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99997787760478534476455876666778999999743658998625546542203024276089999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~gvk~lSf~f~~~~n~~qdiAk~rA~R~l~a~~l~~~g~~d~~~~~~~h~~~gg~p~t~~~a~~ni~~~a~~A~lgGa 320 (483)
T d1ccwb_ 241 AEQGVKNITVGYGECGNMIQDIAALRCLEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPQDESKAFGVIVTATTIAALAGA 320 (483)
T ss_dssp HHTTCCEEEEEEECCSCHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEECCCSCCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 98260038886316788999999999999999999997399986488999765178897567788899999999996499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 q~lht~s~dEA~~iPT~ea~~~alrttq~i~~~~~~~pl~gs~~ve~~t~~i~~ea~~ii~~I~~lG~gdl~~g~v~Aie 400 (483)
T d1ccwb_ 321 TKVIVKTPHEAIGIPTKEANAAGIKATKMALNMLEGQRMPMSKELETEMAVIKAETKCILDKMFELGKGDLAIGTVKAFE 400 (483)
T ss_dssp SEEECCCTTTTTSSCCHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 77984777786508999999999999999999727998788578999999999999999999997379747889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~G~lDiPfa~~~~n~~~~~~~rD~~G~~R~~d~gnlp~~~~~~~~~~~kl~~R~~~e~r~~~~q~~~DDi~A~~~g~l~~ 480 (483)
T d1ccwb_ 401 TGVMDIPFGPSKYNAGKMMPVRDNLGCVRYLEFGNVPFTEEIKNYNRERLQERAKFEGRDVSFQMVIDDIFAVGKGRLIG 480 (483)
T ss_dssp HTSSCCTTCCCTTSCCCCEEEECTTSCEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTSSSC
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 17776767864566178320226888314234678888768999999999998873065277888899999985786178
Q ss_pred --C
Q ss_conf --9
Q 000235 1717 --A 1717 (1815)
Q Consensus 1717 --~ 1717 (1815)
.
T Consensus 481 ~~~ 483 (483)
T d1ccwb_ 481 RPE 483 (483)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 999
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=100.00 E-value=0 Score=36540.95 Aligned_cols=1 Identities=100% Similarity=0.071 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~p~~~~~~v~~~~lPg~~~~~~~~~~~~~yaG~l~~~~~~~~~~~~~~~~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcS 80 (483)
T d1ac5a_ 1 LPSSEEYKVAYELLPGLSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCS 80 (483)
T ss_dssp CCCGGGTBCCGGGSTTGGGCSCTTSSCEEEEEEEECSCSSSCSSCCCCCEEEEEEEECSCSGGGSSCCEEEEECCTTTBC
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCHH
T ss_conf 98415301045458899888887776643046786476667777777616999999865888778998899988988389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 S~~g~f~E~GP~~v~~~~~l~~Np~SWn~~an~lfIDqPvGvGfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~ 160 (483)
T d1ac5a_ 81 SMDGALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFK 160 (483)
T ss_dssp THHHHHHSSSSEEECTTSCEEECTTCGGGTSEEEEECCSTTSTTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCEEECCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89889871678087799944327775013377899967888670324788766456654458799999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkGi~IGNg~~d~~~q~~sy~~~~~~~gli~~~~~~ 240 (483)
T d1ac5a_ 161 IFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPN 240 (483)
T ss_dssp HCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEEEEEEEECCCHHHHHTTHHHHHHHTTSCCTTSTT
T ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 58100369757850443230379999999973401456777644020151477557022001089999875888867899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~y~~~~~~~~~~~~~~~p~~~~~~~ 320 (483)
T d1ac5a_ 241 FKHLTNAHENCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDISFVS 320 (483)
T ss_dssp HHHHHHHHHHHHHHHHHCCSGGGGSSSCHHHHTHHHHHHHHTCCCCTTSTTSEEETTEEEEEECTTTTTTTCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999888999999876322145454089999998877642200121266553321013567777553457865256899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~yln~~~V~~ALhv~~~~~~~w~~cs~~v~~~~~~d~~~~~~~~l~~LL~~girVLIy~Gd~D~icn~~Gte~~i~~L~w 400 (483)
T d1ac5a_ 321 KFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKDLICNNKGVLDTIDNLKW 400 (483)
T ss_dssp HHHTSTTHHHHTTCCTTTCCCCCSBCHHHHHHCCCSSCCCGGGGHHHHHHTTCEEEEEEETTCSTTCHHHHHHHHHHCEE
T ss_pred HHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHCCC
T ss_conf 88557545312103787766512077277887438755547999999997799799997881113877899999985888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~g~~~f~~~~~~~~w~~~~~~~~~~~~vaG~~~~~~nltf~~V~~AGHmvP~dqP~~a~~mi~~fl~~~~~~~~~~~~~~ 480 (483)
T d1ac5a_ 401 GGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHMVPFDKSLVSRGIVDIYSNDVMIIDNNGKNVM 480 (483)
T ss_dssp TTEESSCTTCEEEEEEECSSTTCCCCSCCEEEEEETTEEEEEETTCCSSHHHHCHHHHHHHHHHHTTCCEEEEETTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 55446414766455311365346786788999994885999978944558001899999999999689321357887543
Q ss_pred --C
Q ss_conf --9
Q 000235 1683 --T 1683 (1815)
Q Consensus 1683 --~ 1683 (1815)
+
T Consensus 481 ~~~ 483 (483)
T d1ac5a_ 481 ITT 483 (483)
T ss_dssp EEC
T ss_pred CCC
T ss_conf 479
|
| >d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Leech intramolecular trans-sialidase, C-terminal domain species: North american leech (Macrobdella decora) [TaxId: 6405]
Probab=100.00 E-value=0 Score=36541.36 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~yRIP~lv~~~~G~lla~~d~R~~~~~d~~~~idi~~~RStDgGkTWs~~~~i~~~~~~~~~~~~~ 80 (483)
T d2slia2 1 GENIFYAGDVTESNYFRIPSLLTLSTGTVISAADARYGGTHDSKSKINIAFAKSTDGGNTWSEPTLPLKFDDYIAKNIDW 80 (483)
T ss_dssp SBCSSCTTSTTCCSEEEEEEEEECTTSCEEEEEEEESSTTCCSSSCEEEEEEEESSTTSSCCCCEEEECCCSBCCCCCCC
T ss_pred CCCCEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98504789989974586428999089989999936328887667776689999467987888888054476422345665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~~~d~~tG~i~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 160 (483)
T d2slia2 81 PRDSVGKNVQIQGSASYIDPVLLEDKLTKRIFLFADLMPAGIGSSNASVGSGFKEVNGKKYLKLRWHKDAGRAYDYTIRE 160 (483)
T ss_dssp CCSTTGGGCCCSSCCEEEEEEEEEETTTTEEEEEEEEECTTCCGGGCCSSCSEEEETTEEEEEEEETTSCTTCCCEEECG
T ss_pred CCCCCCCCCCCCCCCEECCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCEEECC
T ss_conf 43443433456776254267088979999299999865666466356445531761786321211304788522104235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~S~D~ 240 (483)
T d2slia2 161 KGVIYNDATNQPTEFRVDGEYNLYQHDTNLTCKQYDYNFSGNNLIESKTDVDVNMNIFYKNSVFKAFPTNYLAMRYSDDE 240 (483)
T ss_dssp GGEEEETTTTEEEEEEECTTCBEEETTEECEEEEEEEEEETTEEEEEEEEEEEECBTTSTTCSEEECSSCEEEEEEESST
T ss_pred CCEEECCCCCCCCEEEEECCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCC
T ss_conf 76030156777410354045411105875301036534568632234446665431000356665454315999984675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 G~TWs~~~~~~~~~~~~~~~~~~gp~~gi~l~~~~~~grlv~~~~~~~~~~~~~~~SdD~G~tW~~~~~~~~~~~~~~e~ 320 (483)
T d2slia2 241 GASWSDLDIVSSFKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKSSAELGFMYSDDHGDNWTYVEADNLTGGATAEA 320 (483)
T ss_dssp TSSCCCCEECGGGCCTTCSEEEECSEECEECCSSTTTTCEEEEEEEESSCSEEEEEESSTTSSCEEEECCCCCSCCCCCE
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEE
T ss_conf 45554333444546775216831663136843377684299999966983257999558864158656668888771578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~e~~~g~l~~~~R~~~~~~~~~~S~DgG~tW~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~s~p~~~~~r~~~ 400 (483)
T d2slia2 321 QIVEMPDGSLKTYLRTGSNCIAEVTSIDGGETWSDRVPLQGISTTSYGTQLSVINYSQPIDGKPAIILSSPNATNGRKNG 400 (483)
T ss_dssp EEEECTTSCEEEEECCSSSSCEEEEESSTTSSCCCCEECTTCCCCSSCCCCEEEEEEEEETTEEEEEEEEECCSSSSBCE
T ss_pred EEEECCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 99972686599973247873799997589962576740344468987852056771237899869999678998876562
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~l~~~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~Ys~l~~~~dg~~~~~yE~~~~~~~~~~~~~~~i~~~~~~~~~l~ 480 (483)
T d2slia2 401 KIWIGLVNDTGNTGIDKYSVEWKYSYAVDTPQMGYSYSCLAELPDGQVGLLYEKYDSWSRNELHLKDILKFEKYSISELT 480 (483)
T ss_dssp EEEEEEEEECSCCGGGSEEEEEEEEEESSCTTSBCCCEEEEECSSSCEEEEEECSCSSCTTSCSCSSCEEEEEECHHHHT
T ss_pred EEEEEEECCCCCCCCCCCEEECCCCCEECCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEHHHHC
T ss_conf 59999982799378776152046430312688887466159918995999998898765122464440799997699965
Q ss_pred --C
Q ss_conf --9
Q 000235 1683 --T 1683 (1815)
Q Consensus 1683 --~ 1683 (1815)
.
T Consensus 481 ~~~ 483 (483)
T d2slia2 481 GQA 483 (483)
T ss_dssp TCC
T ss_pred CCC
T ss_conf 689
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=36539.82 Aligned_cols=1 Identities=0% Similarity=-0.693 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
+
T Consensus 1 ~~~iv~t~~G~i~G~~~~~v~~f~gIpYA~pP~g~~Rf~~p~~~~~w~~~~~at~~~~~C~Q~~~~~~~~~~~~~~~sED 80 (483)
T d1qe3a_ 1 THQIVTTQYGKVKGTTENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAYGPICPQPSDLLSLSYTELPRQSED 80 (483)
T ss_dssp CCCEEEETTEEEECEEETTEEEEEEEECSCCCCGGGTTSCCCCCCCCSSEEECBSCCCBCCCCC---------CCCBCSC
T ss_pred CCCEEEECCEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98869969988996980896999067647999987789999789999886678568998988876566566888988875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 CL~lni~~P~~~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~gN~Gl~D 160 (483)
T d1qe3a_ 81 CLYVNVFAPDTPSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSDNLGLLD 160 (483)
T ss_dssp CCEEEEEEECSSCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSCSCHHHHH
T ss_pred CCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCHH
T ss_conf 88799887899888995689983043335775534454212135675589852143041331563322212355114478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 q~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~~~~~~~~~~~~~~~~a~~lgc~~ 240 (483)
T d1qe3a_ 161 QAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAAFLQVLGINE 240 (483)
T ss_dssp HHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999987997399844341100145511155653466567753041134687555541556789999999848987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~cLr~~~~~~ll~a~~~~~~~~~~~~~~~~~~~~~d~~~lp~~p~~~~~~g~~~~vplliG~t~dEg~~~~~~~~~~ 320 (483)
T d1qe3a_ 241 SQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEGYLFFTPDSDV 320 (483)
T ss_dssp TCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETTGGGGTCCTTSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 89998852249999999876320234565443223334665564223223215865675512563256540540366540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tD~~f~~p~~~~a~~~~~~~~vy~Y~f~~~~~~~~~~Ga~H~~ 400 (483)
T d1qe3a_ 321 HSQETLDAALEYLLGKPLAEKAADLYPRSLESQIHMMTDLLFWRPAVAYASAQSHYAPVWMYRFDWHPEKPPYNKAFHAL 400 (483)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHGGGCCSSHHHHHHHHHHHHTHHHHHHHHHHHTTTSCEEEEEECCCCSSTTSCSCCTTT
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECCC
T ss_conf 15789999999873717889998752102689999743234316189998763037981578874047999878715354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 DL~ylFg~~~~~~~~~~~~~t~~d~~ls~~m~~~w~nFaktG~Pn~~~~~Wp~y~~~~~~~l~i~~~~~~~~~p~~er~~ 480 (483)
T d1qe3a_ 401 ELPFVFGNLDGLERMAKAEITDEVKQLSHTIQSAWITFAKTGNPSTEAVNWPAYHEETRETVILDSEITIENDPESEKRQ 480 (483)
T ss_dssp THHHHHTCCTTC-------CCHHHHHHHHHHHHHHHHHHHHSCCCCSSCCCCCCCTTTCEEEEESSSCEEEESTTHHHHH
T ss_pred CHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHH
T ss_conf 20654388642333567789999999999999999996282889999899999779987979979999578795689999
Q ss_pred --C
Q ss_conf --9
Q 000235 1683 --T 1683 (1815)
Q Consensus 1683 --~ 1683 (1815)
=
T Consensus 481 ~lf 483 (483)
T d1qe3a_ 481 KLF 483 (483)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 609
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=100.00 E-value=0 Score=36538.14 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~p~~~~~~v~~~~lPg~~~~~~~~~~~~~yaG~l~~~~~~~~~~~~~~~~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcS 80 (483)
T d1ac5a_ 1 LPSSEEYKVAYELLPGLSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCS 80 (483)
T ss_dssp CCCGGGTBCCGGGSTTGGGCSCTTSSCEEEEEEEECSCSSSCSSCCCCCEEEEEEEECSCSGGGSSCCEEEEECCTTTBC
T ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCHH
T ss_conf 98415301045458899888887776643046786476667777777616999999865888778998899988988389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 S~~g~f~E~GP~~v~~~~~l~~Np~SWn~~an~lfIDqPvGvGfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~ 160 (483)
T d1ac5a_ 81 SMDGALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFK 160 (483)
T ss_dssp THHHHHHSSSSEEECTTSCEEECTTCGGGTSEEEEECCSTTSTTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCEEECCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89889871678087799944327775013377899967888670324788766456654458799999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkGi~IGNg~~d~~~q~~sy~~~~~~~gli~~~~~~ 240 (483)
T d1ac5a_ 161 IFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPN 240 (483)
T ss_dssp HCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEEEEEEEECCCHHHHHTTHHHHHHHTTSCCTTSTT
T ss_pred HCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 58100369757850443230379999999973401456777644020151477557022001089999875888867899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~y~~~~~~~~~~~~~~~p~~~~~~~ 320 (483)
T d1ac5a_ 241 FKHLTNAHENCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDISFVS 320 (483)
T ss_dssp HHHHHHHHHHHHHHHHHCCSGGGGSSSCHHHHTHHHHHHHHTCCCCTTSTTSEEETTEEEEEECTTTTTTTCCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999888999999876322145454089999998877642200121266553321013567777553457865256899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~yln~~~V~~ALhv~~~~~~~w~~cs~~v~~~~~~d~~~~~~~~l~~LL~~girVLIy~Gd~D~icn~~Gte~~i~~L~w 400 (483)
T d1ac5a_ 321 KFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKDLICNNKGVLDTIDNLKW 400 (483)
T ss_dssp HHHTSTTHHHHTTCCTTTCCCCCSBCHHHHHHCCCSSCCCGGGGHHHHHHTTCEEEEEEETTCSTTCHHHHHHHHHHCEE
T ss_pred HHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHCCC
T ss_conf 88557545312103787766512077277887438755547999999997799799997881113877899999985888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~g~~~f~~~~~~~~w~~~~~~~~~~~~vaG~~~~~~nltf~~V~~AGHmvP~dqP~~a~~mi~~fl~~~~~~~~~~~~~~ 480 (483)
T d1ac5a_ 401 GGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYNASHMVPFDKSLVSRGIVDIYSNDVMIIDNNGKNVM 480 (483)
T ss_dssp TTEESSCTTCEEEEEEECSSTTCCCCSCCEEEEEETTEEEEEETTCCSSHHHHCHHHHHHHHHHHTTCCEEEEETTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 55446414766455311365346786788999994885999978944558001899999999999689321357887543
Q ss_pred --C
Q ss_conf --9
Q 000235 1717 --A 1717 (1815)
Q Consensus 1717 --~ 1717 (1815)
+
T Consensus 481 ~~~ 483 (483)
T d1ac5a_ 481 ITT 483 (483)
T ss_dssp EEC
T ss_pred CCC
T ss_conf 479
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=36537.29 Aligned_cols=1 Identities=0% Similarity=-0.727 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~iv~t~~G~i~G~~~~~v~~f~gIpYA~pP~g~~Rf~~p~~~~~w~~~~~at~~~~~C~Q~~~~~~~~~~~~~~~sED 80 (483)
T d1qe3a_ 1 THQIVTTQYGKVKGTTENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAYGPICPQPSDLLSLSYTELPRQSED 80 (483)
T ss_dssp CCCEEEETTEEEECEEETTEEEEEEEECSCCCCGGGTTSCCCCCCCCSSEEECBSCCCBCCCCC---------CCCBCSC
T ss_pred CCCEEEECCEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98869969988996980896999067647999987789999789999886678568998988876566566888988875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 CL~lni~~P~~~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~gN~Gl~D 160 (483)
T d1qe3a_ 81 CLYVNVFAPDTPSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSDNLGLLD 160 (483)
T ss_dssp CCEEEEEEECSSCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSCSCHHHHH
T ss_pred CCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCHH
T ss_conf 88799887899888995689983043335775534454212135675589852143041331563322212355114478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 q~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~~~~~~~~~~~~~~~~a~~lgc~~ 240 (483)
T d1qe3a_ 161 QAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAAFLQVLGINE 240 (483)
T ss_dssp HHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999987997399844341100145511155653466567753041134687555541556789999999848987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~cLr~~~~~~ll~a~~~~~~~~~~~~~~~~~~~~~d~~~lp~~p~~~~~~g~~~~vplliG~t~dEg~~~~~~~~~~ 320 (483)
T d1qe3a_ 241 SQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRDEGYLFFTPDSDV 320 (483)
T ss_dssp TCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETTGGGGTCCTTSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 89998852249999999876320234565443223334665564223223215865675512563256540540366540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tD~~f~~p~~~~a~~~~~~~~vy~Y~f~~~~~~~~~~Ga~H~~ 400 (483)
T d1qe3a_ 321 HSQETLDAALEYLLGKPLAEKAADLYPRSLESQIHMMTDLLFWRPAVAYASAQSHYAPVWMYRFDWHPEKPPYNKAFHAL 400 (483)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHGGGCCSSHHHHHHHHHHHHTHHHHHHHHHHHTTTSCEEEEEECCCCSSTTSCSCCTTT
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECCC
T ss_conf 15789999999873717889998752102689999743234316189998763037981578874047999878715354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 DL~ylFg~~~~~~~~~~~~~t~~d~~ls~~m~~~w~nFaktG~Pn~~~~~Wp~y~~~~~~~l~i~~~~~~~~~p~~er~~ 480 (483)
T d1qe3a_ 401 ELPFVFGNLDGLERMAKAEITDEVKQLSHTIQSAWITFAKTGNPSTEAVNWPAYHEETRETVILDSEITIENDPESEKRQ 480 (483)
T ss_dssp THHHHHTCCTTC-------CCHHHHHHHHHHHHHHHHHHHHSCCCCSSCCCCCCCTTTCEEEEESSSCEEEESTTHHHHH
T ss_pred CHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHH
T ss_conf 20654388642333567789999999999999999996282889999899999779987979979999578795689999
Q ss_pred --C
Q ss_conf --9
Q 000235 1717 --A 1717 (1815)
Q Consensus 1717 --~ 1717 (1815)
=
T Consensus 481 ~lf 483 (483)
T d1qe3a_ 481 KLF 483 (483)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 609
|
| >d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Leech intramolecular trans-sialidase, C-terminal domain species: North american leech (Macrobdella decora) [TaxId: 6405]
Probab=100.00 E-value=0 Score=36538.05 Aligned_cols=1 Identities=100% Similarity=0.271 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~~~~~~~~~~yRIP~lv~~~~G~lla~~d~R~~~~~d~~~~idi~~~RStDgGkTWs~~~~i~~~~~~~~~~~~~ 80 (483)
T d2slia2 1 GENIFYAGDVTESNYFRIPSLLTLSTGTVISAADARYGGTHDSKSKINIAFAKSTDGGNTWSEPTLPLKFDDYIAKNIDW 80 (483)
T ss_dssp SBCSSCTTSTTCCSEEEEEEEEECTTSCEEEEEEEESSTTCCSSSCEEEEEEEESSTTSSCCCCEEEECCCSBCCCCCCC
T ss_pred CCCCEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98504789989974586428999089989999936328887667776689999467987888888054476422345665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~~~d~~tG~i~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 160 (483)
T d2slia2 81 PRDSVGKNVQIQGSASYIDPVLLEDKLTKRIFLFADLMPAGIGSSNASVGSGFKEVNGKKYLKLRWHKDAGRAYDYTIRE 160 (483)
T ss_dssp CCSTTGGGCCCSSCCEEEEEEEEEETTTTEEEEEEEEECTTCCGGGCCSSCSEEEETTEEEEEEEETTSCTTCCCEEECG
T ss_pred CCCCCCCCCCCCCCCEECCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCEEECC
T ss_conf 43443433456776254267088979999299999865666466356445531761786321211304788522104235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~S~D~ 240 (483)
T d2slia2 161 KGVIYNDATNQPTEFRVDGEYNLYQHDTNLTCKQYDYNFSGNNLIESKTDVDVNMNIFYKNSVFKAFPTNYLAMRYSDDE 240 (483)
T ss_dssp GGEEEETTTTEEEEEEECTTCBEEETTEECEEEEEEEEEETTEEEEEEEEEEEECBTTSTTCSEEECSSCEEEEEEESST
T ss_pred CCEEECCCCCCCCEEEEECCCCEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCC
T ss_conf 76030156777410354045411105875301036534568632234446665431000356665454315999984675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 G~TWs~~~~~~~~~~~~~~~~~~gp~~gi~l~~~~~~grlv~~~~~~~~~~~~~~~SdD~G~tW~~~~~~~~~~~~~~e~ 320 (483)
T d2slia2 241 GASWSDLDIVSSFKPEVSKFLVVGPGIGKQISTGENAGRLLVPLYSKSSAELGFMYSDDHGDNWTYVEADNLTGGATAEA 320 (483)
T ss_dssp TSSCCCCEECGGGCCTTCSEEEECSEECEECCSSTTTTCEEEEEEEESSCSEEEEEESSTTSSCEEEECCCCCSCCCCCE
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEE
T ss_conf 45554333444546775216831663136843377684299999966983257999558864158656668888771578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~e~~~g~l~~~~R~~~~~~~~~~S~DgG~tW~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~s~p~~~~~r~~~ 400 (483)
T d2slia2 321 QIVEMPDGSLKTYLRTGSNCIAEVTSIDGGETWSDRVPLQGISTTSYGTQLSVINYSQPIDGKPAIILSSPNATNGRKNG 400 (483)
T ss_dssp EEEECTTSCEEEEECCSSSSCEEEEESSTTSSCCCCEECTTCCCCSSCCCCEEEEEEEEETTEEEEEEEEECCSSSSBCE
T ss_pred EEEECCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 99972686599973247873799997589962576740344468987852056771237899869999678998876562
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~l~~~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~Ys~l~~~~dg~~~~~yE~~~~~~~~~~~~~~~i~~~~~~~~~l~ 480 (483)
T d2slia2 401 KIWIGLVNDTGNTGIDKYSVEWKYSYAVDTPQMGYSYSCLAELPDGQVGLLYEKYDSWSRNELHLKDILKFEKYSISELT 480 (483)
T ss_dssp EEEEEEEEECSCCGGGSEEEEEEEEEESSCTTSBCCCEEEEECSSSCEEEEEECSCSSCTTSCSCSSCEEEEEECHHHHT
T ss_pred EEEEEEECCCCCCCCCCCEEECCCCCEECCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEHHHHC
T ss_conf 59999982799378776152046430312688887466159918995999998898765122464440799997699965
Q ss_pred --C
Q ss_conf --9
Q 000235 1717 --A 1717 (1815)
Q Consensus 1717 --~ 1717 (1815)
.
T Consensus 481 ~~~ 483 (483)
T d2slia2 481 GQA 483 (483)
T ss_dssp TCC
T ss_pred CCC
T ss_conf 689
|
| >d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Di-heme elbow motif domain: Cytochrome c nitrite reductase species: Desulfovibrio desulfuricans [TaxId: 876]
Probab=100.00 E-value=0 Score=36464.55 Aligned_cols=1 Identities=0% Similarity=0.237 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
+
T Consensus 1 t~i~~~e~~~~~~~~~~P~qy~s~~~t~e~~~~t~~~g~~~~~~~~~~~~~~~~~l~~~P~l~~lwaGy~F~~dy~~~RG 80 (482)
T d1oaha_ 1 TGIAETETKMSAFKGQFPQQYASYMKNNEDRIMTDYKGSVPYHKNDNVNPLPKGFKHAQPYLKNLWLGYPFMYEYNETRG 80 (482)
T ss_dssp CCCCTTCCCGGGGTTTCHHHHHHHHGGGCCCCBCSSCBSCCCBTTCSSSCTTTCCTTCCTTHHHHTTTSGGGTCCBCCCC
T ss_pred CCCCCCCCCHHHHHHHCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHCCCCCC
T ss_conf 99775777869998756199998984246422342278644344666665553310038128877277544122066678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 H~y~~~D~~~t~r~~~~~~~~~~~~p~~C~~Chs~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~gIgC~dCH~P~~~ 160 (482)
T d1oaha_ 81 HTYAIDDFLNIDRINRFAADGKGNLPATCWNCKTPKMMEWVSQYGDKFWSMDVNEFRAKDKINAHDETIGCANCHDPATM 160 (482)
T ss_dssp GGGHHHHHHHCTTSCCCCTTCCCSSBGGGGTTTCTTHHHHHHHHGGGTTTSBGGGGCSTTTCCTTTSSSCGGGTBCTTTC
T ss_pred CHHEECHHHHCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 60112014431467887776779998712046893077999981804216760003641012467887106552999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~lrv~r~~~~~al~~~g~d~~k~s~~e~rs~vCaQCHveyy~~~~~~~~~~~~~fPw~~G~~~e~~~~~y~~~~~s~~~~ 240 (482)
T d1oaha_ 161 ELRLYSEPLKDWLKRSGKDWQKMSRNEKRTLVCAQCHVEYYFTHKDNGPAAKPVFPWDNGFNPEDMYQYYKGHGAKGPDG 240 (482)
T ss_dssp CBCCCCHHHHHHHHHTTCCGGGSCHHHHHHHHHHTTSSCCEECCTTTSSTTCEECCCTTCSSHHHHHHHTTSEEEECTTS
T ss_pred CEEECCHHHHHHHHHCCCCHHHCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 62013540799998649984552811100547555686410577544667631147778998899899873246653345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~f~Dw~h~~sgap~~kaqHPe~E~~~~s~H~~~GvsCadCHMP~~~~~g~~~tdH~i~sPl~~~~~~aC~~CH~d~s 320 (482)
T d1oaha_ 241 KPGPFVDWVHAASKVPMIKMQHPEYETFQDGPHGAAGVSCADCHMQYVREDGKKISSHWMTSPMKDPEMRACRQCHADKT 320 (482)
T ss_dssp CEEECCSEECTTTCCEECCCCCCHHHHHTTSTTGGGTCCHHHHHSCC-------CCCCCCSCGGGCTTCTTTTTTSTTSC
T ss_pred CCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 77876420127976704431588632357786444788065516964047870111256667556764016765589867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~e~l~~~v~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~r~Aq~~wd~~~aens~gfHnp~ 400 (482)
T d1oaha_ 321 GEYLRQRVLYTQQKTFDQLLKAQEMSVKAHEAVRLANAYEGHRAANYEALMAEAREMVRKGQLFWDYVSAENSVGFHNPA 400 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999999999999999999999999999998665553224798999999999999877855433203767567969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ea~r~L~~s~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (482)
T d1oaha_ 401 KALDTLMTSMECSQKAVDLATEATDFGIAPALAGDIKKLVPPILTLSRKLQQDPEFLKQNPWTRLLPALPKAEQVWEGQD 480 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTGGGSSCHHHHSCCCCCCCTTGGGCHHHHTTSTTGGGSCCCCCCCCCEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHCCCHHHHHHCHHHHHCCCCCHHHHHHHHCC
T ss_conf 99999999999999999999999980788766410232289701677885479899875668763046851776632014
Q ss_pred -C
Q ss_conf -9
Q 000235 1683 -T 1683 (1815)
Q Consensus 1683 -~ 1683 (1815)
.
T Consensus 481 ~~ 482 (482)
T d1oaha_ 481 RA 482 (482)
T ss_dssp EC
T ss_pred CC
T ss_conf 79
|
| >d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Di-heme elbow motif domain: Cytochrome c nitrite reductase species: Desulfovibrio desulfuricans [TaxId: 876]
Probab=100.00 E-value=0 Score=36461.43 Aligned_cols=1 Identities=100% Similarity=0.835 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 t~i~~~e~~~~~~~~~~P~qy~s~~~t~e~~~~t~~~g~~~~~~~~~~~~~~~~~l~~~P~l~~lwaGy~F~~dy~~~RG 80 (482)
T d1oaha_ 1 TGIAETETKMSAFKGQFPQQYASYMKNNEDRIMTDYKGSVPYHKNDNVNPLPKGFKHAQPYLKNLWLGYPFMYEYNETRG 80 (482)
T ss_dssp CCCCTTCCCGGGGTTTCHHHHHHHHGGGCCCCBCSSCBSCCCBTTCSSSCTTTCCTTCCTTHHHHTTTSGGGTCCBCCCC
T ss_pred CCCCCCCCCHHHHHHHCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHCCCCCC
T ss_conf 99775777869998756199998984246422342278644344666665553310038128877277544122066678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 H~y~~~D~~~t~r~~~~~~~~~~~~p~~C~~Chs~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~gIgC~dCH~P~~~ 160 (482)
T d1oaha_ 81 HTYAIDDFLNIDRINRFAADGKGNLPATCWNCKTPKMMEWVSQYGDKFWSMDVNEFRAKDKINAHDETIGCANCHDPATM 160 (482)
T ss_dssp GGGHHHHHHHCTTSCCCCTTCCCSSBGGGGTTTCTTHHHHHHHHGGGTTTSBGGGGCSTTTCCTTTSSSCGGGTBCTTTC
T ss_pred CHHEECHHHHCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 60112014431467887776779998712046893077999981804216760003641012467887106552999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~lrv~r~~~~~al~~~g~d~~k~s~~e~rs~vCaQCHveyy~~~~~~~~~~~~~fPw~~G~~~e~~~~~y~~~~~s~~~~ 240 (482)
T d1oaha_ 161 ELRLYSEPLKDWLKRSGKDWQKMSRNEKRTLVCAQCHVEYYFTHKDNGPAAKPVFPWDNGFNPEDMYQYYKGHGAKGPDG 240 (482)
T ss_dssp CBCCCCHHHHHHHHHTTCCGGGSCHHHHHHHHHHTTSSCCEECCTTTSSTTCEECCCTTCSSHHHHHHHTTSEEEECTTS
T ss_pred CEEECCHHHHHHHHHCCCCHHHCCCHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 62013540799998649984552811100547555686410577544667631147778998899899873246653345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~f~Dw~h~~sgap~~kaqHPe~E~~~~s~H~~~GvsCadCHMP~~~~~g~~~tdH~i~sPl~~~~~~aC~~CH~d~s 320 (482)
T d1oaha_ 241 KPGPFVDWVHAASKVPMIKMQHPEYETFQDGPHGAAGVSCADCHMQYVREDGKKISSHWMTSPMKDPEMRACRQCHADKT 320 (482)
T ss_dssp CEEECCSEECTTTCCEECCCCCCHHHHHTTSTTGGGTCCHHHHHSCC-------CCCCCCSCGGGCTTCTTTTTTSTTSC
T ss_pred CCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 77876420127976704431588632357786444788065516964047870111256667556764016765589867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~e~l~~~v~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~r~Aq~~wd~~~aens~gfHnp~ 400 (482)
T d1oaha_ 321 GEYLRQRVLYTQQKTFDQLLKAQEMSVKAHEAVRLANAYEGHRAANYEALMAEAREMVRKGQLFWDYVSAENSVGFHNPA 400 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999999999999999999999999999998665553224798999999999999877855433203767567969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ea~r~L~~s~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (482)
T d1oaha_ 401 KALDTLMTSMECSQKAVDLATEATDFGIAPALAGDIKKLVPPILTLSRKLQQDPEFLKQNPWTRLLPALPKAEQVWEGQD 480 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTTGGGSSCHHHHSCCCCCCCTTGGGCHHHHTTSTTGGGSCCCCCCCCCEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHCCCHHHHHHCHHHHHCCCCCHHHHHHHHCC
T ss_conf 99999999999999999999999980788766410232289701677885479899875668763046851776632014
Q ss_pred -C
Q ss_conf -9
Q 000235 1717 -A 1717 (1815)
Q Consensus 1717 -~ 1717 (1815)
.
T Consensus 481 ~~ 482 (482)
T d1oaha_ 481 RA 482 (482)
T ss_dssp EC
T ss_pred CC
T ss_conf 79
|
| >d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ras GEF superfamily: Ras GEF family: Ras GEF domain: Son of sevenless protein homolog 1 (sos-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=36390.43 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~p~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~ik~gTl~~LIe~Lt~~~~~D~~F~~~FLlTYRsF~Tp~eLL~~Li 80 (481)
T d1nvus_ 1 QMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLII 80 (481)
T ss_dssp CCCCCCTTTCGGGSCCCTTTEEECC------CCCCEEEECHHHHHHHHTCSSCCCHHHHHHHHHHGGGTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 98699964355568999878330558756789852422699999999656998887899999999787569999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~Rf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rVl~~l~~Wve~~~~df~~d~~ll~~l~~f~~~~~~~~ 160 (481)
T d1nvus_ 81 ERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKA 160 (481)
T ss_dssp HHHCCCCCCCCHHHHHHHHTTCCCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHHHCCSTT
T ss_pred HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98657897520467777640120347899988997532679999999999999768054408999999999999875256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eiA~QLTl~~~~~f~~I~~~E~l 240 (481)
T d1nvus_ 161 MKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELV 240 (481)
T ss_dssp THHHHHHHHHHHHHHHHC------CCCCCSSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHHHHHHHHHHHTCCGGGTG
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 68999999999998876521475554444678986322347877777763346999999999999999988569989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf~s~~aI~~~L~~~~I~R 320 (481)
T d1nvus_ 241 GSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 320 (481)
T ss_dssp GGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHH
T ss_conf 99872667778997499999999589999999981899989999999999999999988189889999999971685067
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 L~~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~p~IP~lg~~l~Dl~~~~~gn~~~~~~~~~~lINf~K~~~i~ 400 (481)
T d1nvus_ 321 LDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVA 400 (481)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCBCCSHHHHHHHHHHHHSSCSEEEETTEEEEEHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHH
T ss_conf 79999867999999999998760140999999985389983755414899999998339742347998657399999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~~i~~i~~~Q~~~y~~~~~~~i~~~l~~~~~~~~~~~~~~~d~l~~lS~~~EPr~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (481)
T d1nvus_ 401 EITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNP 480 (481)
T ss_dssp HHHHHHHHHHSCCCCCCCCHHHHHHHHTCCTTTTCCHHHHHHHHHHHHHHHSCCTTSCCCCCCCCCCSCCCCCCSSCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999855899977576999999961442023311146999987887189988988888777888777999799999
Q ss_pred C
Q ss_conf 9
Q 000235 1683 T 1683 (1815)
Q Consensus 1683 ~ 1683 (1815)
-
T Consensus 481 ~ 481 (481)
T d1nvus_ 481 R 481 (481)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Chondroitinase B domain: Chondroitinase B species: Pedobacter heparinus [TaxId: 984]
Probab=100.00 E-value=0 Score=36389.46 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~v~~~~tiq~Ai~~a~pGDtI~l~~GtY~~~~i~~~~~Gt~~~pIti~a~~~g~v~i~G~s~i~i~g~~v~i~Gl~~~~ 80 (481)
T d1ofla_ 1 EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKD 80 (481)
T ss_dssp CEECSHHHHHHHHHHCCTTCEEEECSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEECSSSEEEESCEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEECCCEEECCEEEECCCCCCCCCEEEEECCCCCEEECCCCEEEEEECCEEEECEEEEC
T ss_conf 91177699999997289979999899888747799615762489879996799856983897599983999990819989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~I~~n~~~~~~~~G~~i~~~~~~~~ 160 (481)
T d1ofla_ 81 GNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARA 160 (481)
T ss_dssp ECCCGGGCCTTSCCSEEECSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCC
T ss_pred CCCCCCEEECCCCCEEEEEEECCEEEEEEEECCCCCCCCEECCCEEEEEEECCCEEEECCEEECCCCCCCEEEECCCCCE
T ss_conf 98864301205771588676331676357644664453100102268985114428977667447778627994687755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~I~~n~~~~~~~~gn~~~~i~~G~s~~~~sn~~v~nN~~~~~~g~~~ii~~~s~~n~I~nN~~~~~~ 240 (481)
T d1ofla_ 161 IKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQ 240 (481)
T ss_dssp SCCCSCCCCCCCCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBTCEEESCEEESCS
T ss_pred EECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 62375333334507871384076204883237986067501688899951698558935999934788178626985676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ggi~~~~g~~~~i~~N~~~~n~~~~~~gGi~v~~~~~~I~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N 320 (481)
T d1ofla_ 241 GTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANN 320 (481)
T ss_dssp SEEEEEECSSCEEESCEEEECSSSSCBCCEEECSBSCEEESCEEEESSBCGGGTSEEEEECCBCTTSTTCCCBSEEEESC
T ss_pred CEEEECCCCCCEEECCEEECCCCCCCCCEEEEECCCEEEECCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECC
T ss_conf 46998236676887889977887676424999769829989697778886510631697678986524444346279898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~n~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~N~~~~~~~~~~~~~~~~~g~~~~~~~~~n~~~~~~~~~~~ 400 (481)
T d1ofla_ 321 AFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPV 400 (481)
T ss_dssp EEESCSSEEEESSTTHHHHHHHHHHHTCCCBCCCSEEEESCEEECCSCCCCCSEECTTCCTTSSEEESCEEESSCCSSSC
T ss_pred EEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCEEEEECCCCCCCCCCEECCEEECCCCCCCC
T ss_conf 79888884155065454433322356102488877389885788898851488626878533672238776415677663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vg~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 480 (481)
T d1ofla_ 401 NISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKE 480 (481)
T ss_dssp CCBCCSTTCCCCCCCCCCCCTTCCCCHHHHHHTCSCSCCCCHHHHSCTTCCSCCCSSTTTSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCC
T ss_conf 32256555311105776665442146653104665452556223573124467886222020486455655578641468
Q ss_pred C
Q ss_conf 9
Q 000235 1683 T 1683 (1815)
Q Consensus 1683 ~ 1683 (1815)
.
T Consensus 481 ~ 481 (481)
T d1ofla_ 481 H 481 (481)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ras GEF superfamily: Ras GEF family: Ras GEF domain: Son of sevenless protein homolog 1 (sos-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=36388.84 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~p~~~~~~~~~~d~~~~i~~~~~~~~~~~~~~ik~gTl~~LIe~Lt~~~~~D~~F~~~FLlTYRsF~Tp~eLL~~Li 80 (481)
T d1nvus_ 1 QMRLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLII 80 (481)
T ss_dssp CCCCCCTTTCGGGSCCCTTTEEECC------CCCCEEEECHHHHHHHHTCSSCCCHHHHHHHHHHGGGTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 98699964355568999878330558756789852422699999999656998887899999999787569999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~Rf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rVl~~l~~Wve~~~~df~~d~~ll~~l~~f~~~~~~~~ 160 (481)
T d1nvus_ 81 ERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKA 160 (481)
T ss_dssp HHHCCCCCCCCHHHHHHHHTTCCCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTHHHHHCHHHHHHHHHHHHHCCSTT
T ss_pred HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98657897520467777640120347899988997532679999999999999768054408999999999999875256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eiA~QLTl~~~~~f~~I~~~E~l 240 (481)
T d1nvus_ 161 MKKWVESITKIIQRKKIARDNGPGHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELV 240 (481)
T ss_dssp THHHHHHHHHHHHHHHHC------CCCCCSSCCCCCCCCSSCTTCTTTCCTTTSCHHHHHHHHHHHHHHHHHTCCGGGTG
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 68999999999998876521475554444678986322347877777763346999999999999999988569989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~fI~ia~~~~~l~Nf~s~~aI~~~L~~~~I~R 320 (481)
T d1nvus_ 241 GSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYR 320 (481)
T ss_dssp GGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHH
T ss_conf 99872667778997499999999589999999981899989999999999999999988189889999999971685067
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 L~~tw~~l~~~~~~~~~~l~~l~~~n~~~yr~~l~~~~~p~IP~lg~~l~Dl~~~~~gn~~~~~~~~~~lINf~K~~~i~ 400 (481)
T d1nvus_ 321 LDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVA 400 (481)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCBCCSHHHHHHHHHHHHSSCSEEEETTEEEEEHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHH
T ss_conf 79999867999999999998760140999999985389983755414899999998339742347998657399999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~i~~i~~~Q~~~y~~~~~~~i~~~l~~~~~~~~~~~~~~~d~l~~lS~~~EPr~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (481)
T d1nvus_ 401 EITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNP 480 (481)
T ss_dssp HHHHHHHHHHSCCCCCCCCHHHHHHHHTCCTTTTCCHHHHHHHHHHHHHHHSCCTTSCCCCCCCCCCSCCCCCCSSCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999855899977576999999961442023311146999987887189988988888777888777999799999
Q ss_pred C
Q ss_conf 9
Q 000235 1717 A 1717 (1815)
Q Consensus 1717 ~ 1717 (1815)
.
T Consensus 481 ~ 481 (481)
T d1nvus_ 481 R 481 (481)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Chondroitinase B domain: Chondroitinase B species: Pedobacter heparinus [TaxId: 984]
Probab=100.00 E-value=0 Score=36387.93 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~v~~~~tiq~Ai~~a~pGDtI~l~~GtY~~~~i~~~~~Gt~~~pIti~a~~~g~v~i~G~s~i~i~g~~v~i~Gl~~~~ 80 (481)
T d1ofla_ 1 EVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKD 80 (481)
T ss_dssp CEECSHHHHHHHHHHCCTTCEEEECSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEECSSSEEEESCEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEECCCEEECCEEEECCCCCCCCCEEEEECCCCCEEECCCCEEEEEECCEEEECEEEEC
T ss_conf 91177699999997289979999899888747799615762489879996799856983897599983999990819989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~I~~n~~~~~~~~G~~i~~~~~~~~ 160 (481)
T d1ofla_ 81 GNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARA 160 (481)
T ss_dssp ECCCGGGCCTTSCCSEEECSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCC
T ss_pred CCCCCCEEECCCCCEEEEEEECCEEEEEEEECCCCCCCCEECCCEEEEEEECCCEEEECCEEECCCCCCCEEEECCCCCE
T ss_conf 98864301205771588676331676357644664453100102268985114428977667447778627994687755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~I~~n~~~~~~~~gn~~~~i~~G~s~~~~sn~~v~nN~~~~~~g~~~ii~~~s~~n~I~nN~~~~~~ 240 (481)
T d1ofla_ 161 IKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQ 240 (481)
T ss_dssp SCCCSCCCCCCCCEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBTCEEESCEEESCS
T ss_pred EECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 62375333334507871384076204883237986067501688899951698558935999934788178626985676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ggi~~~~g~~~~i~~N~~~~n~~~~~~gGi~v~~~~~~I~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N 320 (481)
T d1ofla_ 241 GTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANN 320 (481)
T ss_dssp SEEEEEECSSCEEESCEEEECSSSSCBCCEEECSBSCEEESCEEEESSBCGGGTSEEEEECCBCTTSTTCCCBSEEEESC
T ss_pred CEEEECCCCCCEEECCEEECCCCCCCCCEEEEECCCEEEECCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECC
T ss_conf 46998236676887889977887676424999769829989697778886510631697678986524444346279898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~n~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~N~~~~~~~~~~~~~~~~~g~~~~~~~~~n~~~~~~~~~~~ 400 (481)
T d1ofla_ 321 AFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPV 400 (481)
T ss_dssp EEESCSSEEEESSTTHHHHHHHHHHHTCCCBCCCSEEEESCEEECCSCCCCCSEECTTCCTTSSEEESCEEESSCCSSSC
T ss_pred EEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCEEEEECCCCCCCCCCEECCEEECCCCCCCC
T ss_conf 79888884155065454433322356102488877389885788898851488626878533672238776415677663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vg~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 480 (481)
T d1ofla_ 401 NISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKE 480 (481)
T ss_dssp CCBCCSTTCCCCCCCCCCCCTTCCCCHHHHHHTCSCSCCCCHHHHSCTTCCSCCCSSTTTSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCC
T ss_conf 32256555311105776665442146653104665452556223573124467886222020486455655578641468
Q ss_pred C
Q ss_conf 9
Q 000235 1717 A 1717 (1815)
Q Consensus 1717 ~ 1717 (1815)
+
T Consensus 481 ~ 481 (481)
T d1ofla_ 481 H 481 (481)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera aggregans [TaxId: 54254]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: beta-Glycosidase species: Archaeon Thermosphaera aggregans [TaxId: 54254]
Probab=100.00 E-value=0 Score=36382.68 Aligned_cols=1 Identities=0% Similarity=-0.794 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 lkFP~~F~wG~Atsa~QiEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~gd~~~~a~d~y~~y~eDi~l~~~lG~~~yRfS 80 (481)
T d1qvba_ 1 MKFPKDFMIGYSSSPFQFEAGIPGSEDPNSDWWVWVHDPENTAAGLVSGDFPENGPGYWNLNQNDHDLAEKLGVNTIRVG 80 (481)
T ss_dssp CBCCTTCEEEEECCHHHHSCCSTTCCCTTBHHHHHHHCHHHHHHTSSCSCCGGGSCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCEEEEECHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCEEECC
T ss_conf 97989987867663877647858799987010122414786668876898755431223342999999997499988723
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 i~WsRi~P~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~gv~~Y~~~i~~l~~~GI~P~VTL~H~dlP~~L~d 160 (481)
T d1qvba_ 81 VEWSRIFPKPTFNVKVPVERDENGSIVHVDVDDKAVERLDELANKEAVNHYVEMYKDWVERGRKLILNLYHWPLPLWLHN 160 (481)
T ss_dssp CCHHHHCSSCCTTSCCCEEECTTSCEEEECCCHHHHHHHHHHSCHHHHHHHHHHHHHHHTTTCEEEEESCCSCCBTTTBC
T ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHH
T ss_conf 75876684787765443333445653223222000011024579999999999999999809855899845887588762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~g~~~~~GGW~n~~~v~~F~~YA~~v~~~fgdrVk~WiTiNEP~~~~~~gy~~~~G~~~Pg~~~~~~~~~a~~~ 240 (481)
T d1qvba_ 161 PIMVRRMGPDRAPSGWLNEESVVEFAKYAAYIAWKMGELPVMWSTMNEPNVVYEQGYMFVKGGFPPGYLSLEAADKARRN 240 (481)
T ss_dssp HHHHHHHCGGGSCBGGGSTHHHHHHHHHHHHHHHHHTTSCSEEEEEECHHHHHHHHHTCGGGCCTTCCCCHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 22101235544578833777999999999999999633214057628984898504333566679876426667677899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~l~AHa~A~~~~~~~~~~~igi~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~g~~~~~~~~~~~i~~~~DfiGiNy 320 (481)
T d1qvba_ 241 MIQAHARAYDNIKRFSKKPVGLIYAFQWFELLEGPAEVFDKFKSSKLYYFTDIVSKGSSIINVEYRRDLANRLDWLGVNY 320 (481)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEEECCEEECSSSCCSHHHHHHHHHTSTTTTHHHHSCCSSCCCCCTTTSSCCSEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 99989999998765056753337750202666782999999999741534334336885567889997614577130233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 Yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~Pi~ITENG~~~~~D~~Ri~y 400 (481)
T d1qvba_ 321 YSRLVYKIVDDKPIILHGYGFLCTPGGISPAENPCSDFGWEVYPEGLYLLLKELYNRYGVDLIVTENGVSDSRDALRPAY 400 (481)
T ss_dssp CCEEEEECCTTCCEECTTSGGGSCTTCBCTTSCBBCTTCCBCCTHHHHHHHHHHHHHHCCEEEEEECCCCCTTCSSHHHH
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 45358751588865556655334677767888987754565586899999999988609998997998876667589999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 401 l~~hL~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~t~~R~pK~Sa~~yk~ii~~n~~p~~~~~~~~~ 480 (481)
T d1qvba_ 401 LVSHVYSVWKAANEGIPVKGYLHWSLTDNYEWAQGFRQKFGLVMVDFKTKKRYLRPSALVFREIATHNGIPDELQHLTLI 480 (481)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECSBCCCCGGGTTSSCCCSEEEETTTTEEEECHHHHHHHHHHHHTBCCGGGGGGGSC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHCHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 99999999999987998789833462465173331526674289869999854044999999999848998001004105
Q ss_pred C
Q ss_conf 9
Q 000235 1683 T 1683 (1815)
Q Consensus 1683 ~ 1683 (1815)
.
T Consensus 481 ~ 481 (481)
T d1qvba_ 481 Q 481 (481)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1qvba_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Thermosphaera aggregans [TaxId: 54254]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: beta-Glycosidase species: Archaeon Thermosphaera aggregans [TaxId: 54254]
Probab=100.00 E-value=0 Score=36381.17 Aligned_cols=1 Identities=0% Similarity=-0.860 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 lkFP~~F~wG~Atsa~QiEG~~~~~g~~~s~wd~~~~~~~~~~~~~~~gd~~~~a~d~y~~y~eDi~l~~~lG~~~yRfS 80 (481)
T d1qvba_ 1 MKFPKDFMIGYSSSPFQFEAGIPGSEDPNSDWWVWVHDPENTAAGLVSGDFPENGPGYWNLNQNDHDLAEKLGVNTIRVG 80 (481)
T ss_dssp CBCCTTCEEEEECCHHHHSCCSTTCCCTTBHHHHHHHCHHHHHHTSSCSCCGGGSCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCEEEEECHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCEEECC
T ss_conf 97989987867663877647858799987010122414786668876898755431223342999999997499988723
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 i~WsRi~P~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~n~~gv~~Y~~~i~~l~~~GI~P~VTL~H~dlP~~L~d 160 (481)
T d1qvba_ 81 VEWSRIFPKPTFNVKVPVERDENGSIVHVDVDDKAVERLDELANKEAVNHYVEMYKDWVERGRKLILNLYHWPLPLWLHN 160 (481)
T ss_dssp CCHHHHCSSCCTTSCCCEEECTTSCEEEECCCHHHHHHHHHHSCHHHHHHHHHHHHHHHTTTCEEEEESCCSCCBTTTBC
T ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHH
T ss_conf 75876684787765443333445653223222000011024579999999999999999809855899845887588762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~g~~~~~GGW~n~~~v~~F~~YA~~v~~~fgdrVk~WiTiNEP~~~~~~gy~~~~G~~~Pg~~~~~~~~~a~~~ 240 (481)
T d1qvba_ 161 PIMVRRMGPDRAPSGWLNEESVVEFAKYAAYIAWKMGELPVMWSTMNEPNVVYEQGYMFVKGGFPPGYLSLEAADKARRN 240 (481)
T ss_dssp HHHHHHHCGGGSCBGGGSTHHHHHHHHHHHHHHHHHTTSCSEEEEEECHHHHHHHHHTCGGGCCTTCCCCHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 22101235544578833777999999999999999633214057628984898504333566679876426667677899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~l~AHa~A~~~~~~~~~~~igi~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~g~~~~~~~~~~~i~~~~DfiGiNy 320 (481)
T d1qvba_ 241 MIQAHARAYDNIKRFSKKPVGLIYAFQWFELLEGPAEVFDKFKSSKLYYFTDIVSKGSSIINVEYRRDLANRLDWLGVNY 320 (481)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEEECCEEECSSSCCSHHHHHHHHHTSTTTTHHHHSCCSSCCCCCTTTSSCCSEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 99989999998765056753337750202666782999999999741534334336885567889997614577130233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~Pi~ITENG~~~~~D~~Ri~y 400 (481)
T d1qvba_ 321 YSRLVYKIVDDKPIILHGYGFLCTPGGISPAENPCSDFGWEVYPEGLYLLLKELYNRYGVDLIVTENGVSDSRDALRPAY 400 (481)
T ss_dssp CCEEEEECCTTCCEECTTSGGGSCTTCBCTTSCBBCTTCCBCCTHHHHHHHHHHHHHHCCEEEEEECCCCCTTCSSHHHH
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 45358751588865556655334677767888987754565586899999999988609998997998876667589999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 401 l~~hL~~~~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~t~~R~pK~Sa~~yk~ii~~n~~p~~~~~~~~~ 480 (481)
T d1qvba_ 401 LVSHVYSVWKAANEGIPVKGYLHWSLTDNYEWAQGFRQKFGLVMVDFKTKKRYLRPSALVFREIATHNGIPDELQHLTLI 480 (481)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECSBCCCCGGGTTSSCCCSEEEETTTTEEEECHHHHHHHHHHHHTBCCGGGGGGGSC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHCHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 99999999999987998789833462465173331526674289869999854044999999999848998001004105
Q ss_pred C
Q ss_conf 9
Q 000235 1717 A 1717 (1815)
Q Consensus 1717 ~ 1717 (1815)
+
T Consensus 481 ~ 481 (481)
T d1qvba_ 481 Q 481 (481)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hypothetical protein PH1602 superfamily: Hypothetical protein PH1602 family: Hypothetical protein PH1602 domain: Hypothetical protein PH1602 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=36310.94 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~~~l~~~~~~~~~ip~~~~~m~vp~~i~~~~~~~~~~~~~~a~~Ql~~~a~LPgvv~~~~~MPD~H~G~G~pIG~V~a~~ 80 (480)
T d1uc2a_ 1 VVPLKRIDKIRWEIPKFDKRMRVPGRVYADEVLLEKMKNDRTLEQATNVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFD 80 (480)
T ss_dssp CCCCEECSSSEEEECCCSTTCSSCEEEECCHHHHHHHHSSSHHHHHHHHTTSTTBCSCEEEEEEEECCSSSCEEEEEEEE
T ss_pred CCCEEEECCCEEECCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCEEEEEEEC
T ss_conf 97349814866986788899705689993777742101236999999986597743400658867878898878898722
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~g~I~P~~VG~DIgCGm~l~~t~l~~~~~~~~~~~l~~~l~~~ip~G~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 160 (480)
T d1uc2a_ 81 VKEGVISPGGIGYDINCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYG 160 (480)
T ss_dssp TTTCEECGGGTCSSTTCEEEEECCSCBHHHHGGGHHHHHHHHHHHSCCSTTCCCSSCCCTTSCHHHHHHHHHHHHHTTSS
T ss_pred CCCCEEECCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 76997832762358178428986589889876789999999984378676767755565333046665545788761634
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~dl~~~e~~g~~~~~d~~~v~~~~~~r~~~qLGTLGgGNHFiEiq~ve~i~d~~~a~~~Gl~~g~v~lmiHSGSRglG 240 (480)
T d1uc2a_ 161 WERDLERLEEGGRMEGADPEAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFEGQVVVMVHTGSRGLG 240 (480)
T ss_dssp CGGGGGGSGGGGCCTTCCGGGSCHHHHHHHGGGSSCCCSTTCEEEEEEEEEESCHHHHHHTTCCTTBEEEEEEECCHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 26569987750774457836661898860100146667886168886531006798999719886848999957987665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~V~~~y~~~~~~~~~~~~~~~pd~~la~~p~~s~~g~~Yl~aM~~A~nfA~~NR~~i~~~i~~~l~~~~~~~~~~~l~~ 320 (480)
T d1uc2a_ 241 HQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGM 320 (480)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCCSSTTCCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999996289988653223537998899999999999999998599999999999998735574333443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~v~dv~HN~~~~E~h~~~~~~~~~~VHRKGAt~A~~~~~~~~~~~~~~~GqpviIPGSMg~~Syiv~G~~~g~~~s~~S 400 (480)
T d1uc2a_ 321 DIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIPGSMGTASYILAGTEGAMKETFGS 400 (480)
T ss_dssp CEEEEEESEEEEEEEEEETTEEEEEEEEEESEEECCCTTCTTSCTTTTTTCCEEEECCCTTSCEEEEECCHHHHHHSSSE
T ss_pred CEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCEEEEEECCCCCHHHHCC
T ss_conf 01454010013254412246564689983144345777775543446517975560368888548998578877454278
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 a~HGAGR~mSR~~A~~~~~~~~~~~~l~~~gi~v~~~~~~~l~dEAP~AYKdi~~Vi~~~~~~gl~~~VarlkPl~~iKG 480 (480)
T d1uc2a_ 401 TCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 480 (480)
T ss_dssp EECSCCBSSCHHHHHHHCCHHHHHHHHHHTTCEEEESCHHHHHHTCGGGBCCHHHHHHHHHHHTSSEEEEEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEEECC
T ss_conf 88530025519999865599999999986791999899886634380016998999998886697458899987899649
|
| >d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hypothetical protein PH1602 superfamily: Hypothetical protein PH1602 family: Hypothetical protein PH1602 domain: Hypothetical protein PH1602 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=36307.91 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~l~~~~~~~~~ip~~~~~m~vp~~i~~~~~~~~~~~~~~a~~Ql~~~a~LPgvv~~~~~MPD~H~G~G~pIG~V~a~~ 80 (480)
T d1uc2a_ 1 VVPLKRIDKIRWEIPKFDKRMRVPGRVYADEVLLEKMKNDRTLEQATNVAMLPGIYKYSIVMPDGHQGYGFPIGGVAAFD 80 (480)
T ss_dssp CCCCEECSSSEEEECCCSTTCSSCEEEECCHHHHHHHHSSSHHHHHHHHTTSTTBCSCEEEEEEEECCSSSCEEEEEEEE
T ss_pred CCCEEEECCCEEECCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCEEEEEEEC
T ss_conf 97349814866986788899705689993777742101236999999986597743400658867878898878898722
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~g~I~P~~VG~DIgCGm~l~~t~l~~~~~~~~~~~l~~~l~~~ip~G~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 160 (480)
T d1uc2a_ 81 VKEGVISPGGIGYDINCGVRLIRTNLTEKEVRPRIKQLVDTLFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYG 160 (480)
T ss_dssp TTTCEECGGGTCSSTTCEEEEECCSCBHHHHGGGHHHHHHHHHHHSCCSTTCCCSSCCCTTSCHHHHHHHHHHHHHTTSS
T ss_pred CCCCEEECCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 76997832762358178428986589889876789999999984378676767755565333046665545788761634
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~dl~~~e~~g~~~~~d~~~v~~~~~~r~~~qLGTLGgGNHFiEiq~ve~i~d~~~a~~~Gl~~g~v~lmiHSGSRglG 240 (480)
T d1uc2a_ 161 WERDLERLEEGGRMEGADPEAVSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFEGQVVVMVHTGSRGLG 240 (480)
T ss_dssp CGGGGGGSGGGGCCTTCCGGGSCHHHHHHHGGGSSCCCSTTCEEEEEEEEEESCHHHHHHTTCCTTBEEEEEEECCHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 26569987750774457836661898860100146667886168886531006798999719886848999957987665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~V~~~y~~~~~~~~~~~~~~~pd~~la~~p~~s~~g~~Yl~aM~~A~nfA~~NR~~i~~~i~~~l~~~~~~~~~~~l~~ 320 (480)
T d1uc2a_ 241 HQVASDYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGM 320 (480)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCCSSTTCCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999996289988653223537998899999999999999998599999999999998735574333443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~v~dv~HN~~~~E~h~~~~~~~~~~VHRKGAt~A~~~~~~~~~~~~~~~GqpviIPGSMg~~Syiv~G~~~g~~~s~~S 400 (480)
T d1uc2a_ 321 DIVYDVAHNIGKVEEHEVDGKRVKVIVHRKGATRAFPPGHEAVPRLYRDVGQPVLIPGSMGTASYILAGTEGAMKETFGS 400 (480)
T ss_dssp CEEEEEESEEEEEEEEEETTEEEEEEEEEESEEECCCTTCTTSCTTTTTTCCEEEECCCTTSCEEEEECCHHHHHHSSSE
T ss_pred CEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCEEEEEECCCCCHHHHCC
T ss_conf 01454010013254412246564689983144345777775543446517975560368888548998578877454278
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 a~HGAGR~mSR~~A~~~~~~~~~~~~l~~~gi~v~~~~~~~l~dEAP~AYKdi~~Vi~~~~~~gl~~~VarlkPl~~iKG 480 (480)
T d1uc2a_ 401 TCHGAGRVLSRKAATRQYRGDRIRQELLNRGIYVRAASMRVVAEEAPGAYKNVDNVVKVVSEAGIAKLVARMRPIGVAKG 480 (480)
T ss_dssp EECSCCBSSCHHHHHHHCCHHHHHHHHHHTTCEEEESCHHHHHHTCGGGBCCHHHHHHHHHHHTSSEEEEEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEEECC
T ss_conf 88530025519999865599999999986791999899886634380016998999998886697458899987899649
|
| >d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Alkaline phosphatase domain: Alkaline phosphatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=36235.49 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~AKNVIl~IgDGmg~~~~taaR~~~g~~~~~~g~~~~L~~d~~p~~g~~ 80 (479)
T d1zeda1 1 IIPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEIPLAMDRFPYVALS 80 (479)
T ss_dssp CCCGGGGSHHHHHHHHHHHHHHHHHCCCCSBCCSEEEEEEETTCCHHHHHHHHHHHHHHTTSCSTTSCCTGGGCSEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 98834259799999999999999745855788886999985899999999999972453678786774421168612787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~T~s~d~~vtDSAa~aTA~atG~Kt~ng~igvd~~~~~~~~~~~~~~~~~tIle~Ak~~G~~tGiVTT~~ithATPAaf~ 160 (479)
T d1zeda1 81 KTYNVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTY 160 (479)
T ss_dssp ECCCSSCSSCCHHHHHHHHHHSSCCCTTCBSBCTTSCTTCGGGCTTCBCCCHHHHHHHTTCEEEEEEEEETTSHHHHTTT
T ss_pred ECCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE
T ss_conf 52248887787389999998684066863503665566766565556067999999975985125654544776421466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 AH~~~R~~~~d~~~~~~~~~~~~~~ia~q~i~~~~~dVilGGG~~~f~p~~~~~~~~~~~~~~~g~r~Dg~~L~~~~~~~ 240 (479)
T d1zeda1 161 AHTVNRNWYSDADVPASARQEGCQDIATQLISNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAK 240 (479)
T ss_dssp CCBSCTTCCSGGGSCHHHHHTTCCCHHHHHHHTSCCSEEEEECGGGGSBTTCCCSSCTTCGGGSCCBSSCCCHHHHHHHT
T ss_pred ECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCEEECCCHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 31465333220012012332001569998750345617851632212335787743310110357445437799999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~g~~~v~~~~~l~~~~~~~~~~~llGlf~~~~l~~~~~~~~~~~PsL~eMt~~AL~~L~~n~~GFfLmVEgg~ID~a~H 320 (479)
T d1zeda1 241 RQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHH 320 (479)
T ss_dssp CTTEEEECSHHHHHHHHTCTTCSEEEEECSSSSCCCGGGCCTTTCCCHHHHHHHHHHHHTTCTTCEEEEEEETTHHHHHH
T ss_pred CCCCEEEECHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 25854870557766302346755157854678886533457877876999999999987248987079976033531023
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~nd~~~~i~E~~~fd~AV~~a~~~~~~~dTLiIVTADH~~gg~~~g~~~~~~~i~~~~~~~~~d~~~~~~~~~~~g~~~~ 400 (479)
T d1zeda1 321 ESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPGYV 400 (479)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCTTTEEEEEEESCEESEEECSCCCTTCCTTSBCSSCCTTSSCCBSEEEEESTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 02199999999999999999999725788279998506777433576667764434565544456651244305677754
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~HTg~dV~v~A~Gpga~~f~G~~dNT~I~~~m~~A~~l~~~~~~~~~~~ 479 (479)
T d1zeda1 401 LKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTACDLAPP 479 (479)
T ss_dssp CBTTBCCCCCHHHHTSTTCCCCEEECCSSCCEECSCEEEEEESTTGGGCCSEEETTHHHHHHHHHTTCGGGSSCCCBCC
T ss_pred CCCCCCCCCCHHHHCCHHHHHHCCCCCCCCCCCCCEEHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 4555435664443037223420325777789677462630688884357874612389999999708999776788997
|
| >d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Alkaline phosphatase domain: Alkaline phosphatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=36232.65 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~AKNVIl~IgDGmg~~~~taaR~~~g~~~~~~g~~~~L~~d~~p~~g~~ 80 (479)
T d1zeda1 1 IIPVEEENPDFWNREAAEALGAAKKLQPAQTAAKNLIIFLGDGMGVSTVTAARILKGQKKDKLGPEIPLAMDRFPYVALS 80 (479)
T ss_dssp CCCGGGGSHHHHHHHHHHHHHHHHHCCCCSBCCSEEEEEEETTCCHHHHHHHHHHHHHHTTSCSTTSCCTGGGCSEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 98834259799999999999999745855788886999985899999999999972453678786774421168612787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~T~s~d~~vtDSAa~aTA~atG~Kt~ng~igvd~~~~~~~~~~~~~~~~~tIle~Ak~~G~~tGiVTT~~ithATPAaf~ 160 (479)
T d1zeda1 81 KTYNVDKHVPDSGATATAYLCGVKGNFQTIGLSAAARFNQCNTTRGNEVISVMNRAKKAGKSVGVVTTTRVQHASPAGTY 160 (479)
T ss_dssp ECCCSSCSSCCHHHHHHHHHHSSCCCTTCBSBCTTSCTTCGGGCTTCBCCCHHHHHHHTTCEEEEEEEEETTSHHHHTTT
T ss_pred ECCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE
T ss_conf 52248887787389999998684066863503665566766565556067999999975985125654544776421466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 AH~~~R~~~~d~~~~~~~~~~~~~~ia~q~i~~~~~dVilGGG~~~f~p~~~~~~~~~~~~~~~g~r~Dg~~L~~~~~~~ 240 (479)
T d1zeda1 161 AHTVNRNWYSDADVPASARQEGCQDIATQLISNMDIDVILGGGRKYMFRMGTPDPEYPDDYSQGGTRLDGKNLVQEWLAK 240 (479)
T ss_dssp CCBSCTTCCSGGGSCHHHHHTTCCCHHHHHHHTSCCSEEEEECGGGGSBTTCCCSSCTTCGGGSCCBSSCCCHHHHHHHT
T ss_pred ECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCEEECCCHHHCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHH
T ss_conf 31465333220012012332001569998750345617851632212335787743310110357445437799999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~g~~~v~~~~~l~~~~~~~~~~~llGlf~~~~l~~~~~~~~~~~PsL~eMt~~AL~~L~~n~~GFfLmVEgg~ID~a~H 320 (479)
T d1zeda1 241 RQGARYVWNRTELMQASLDPSVTHLMGLFEPGDMKYEIHRDSTLDPSLMEMTEAALRLLSRNPRGFFLFVEGGRIDHGHH 320 (479)
T ss_dssp CTTEEEECSHHHHHHHHTCTTCSEEEEECSSSSCCCGGGCCTTTCCCHHHHHHHHHHHHTTCTTCEEEEEEETTHHHHHH
T ss_pred CCCCEEEECHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 25854870557766302346755157854678886533457877876999999999987248987079976033531023
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~nd~~~~i~E~~~fd~AV~~a~~~~~~~dTLiIVTADH~~gg~~~g~~~~~~~i~~~~~~~~~d~~~~~~~~~~~g~~~~ 400 (479)
T d1zeda1 321 ESRAYRALTETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPLRGSSIFGLAPGKARDRKAYTVLLYGNGPGYV 400 (479)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCTTTEEEEEEESCEESEEECSCCCTTCCTTSBCSSCCTTSSCCBSEEEEESTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 02199999999999999999999725788279998506777433576667764434565544456651244305677754
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~HTg~dV~v~A~Gpga~~f~G~~dNT~I~~~m~~A~~l~~~~~~~~~~~ 479 (479)
T d1zeda1 401 LKDGARPDVTESESGSPEYRQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTFIAHVMAFAACLEPYTACDLAPP 479 (479)
T ss_dssp CBTTBCCCCCHHHHTSTTCCCCEEECCSSCCEECSCEEEEEESTTGGGCCSEEETTHHHHHHHHHTTCGGGSSCCCBCC
T ss_pred CCCCCCCCCCHHHHCCHHHHHHCCCCCCCCCCCCCEEHHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 4555435664443037223420325777789677462630688884357874612389999999708999776788997
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=36230.04 Aligned_cols=1 Identities=0% Similarity=-1.425 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~~~~W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~kLdYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~d 80 (479)
T d1uoka2 1 MEKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMED 80 (479)
T ss_dssp CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHH
T ss_pred CCCHHHCCCEEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 97302135758999714421799998749999998459999749997997987379999999685466775713399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (479)
T d1uoka2 81 WDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYL 160 (479)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEE
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999987898996664234444420222223204776566310156556767677666678875434445675121
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~dln~~~~~v~~~i~~~~~~W~e~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (479)
T d1uoka2 161 HLFSKKQPDLNWDNEKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEM 240 (479)
T ss_dssp CSSCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 14577762015678899999999999999769977543320011022367655543201133412313671688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
T d1uoka2 241 NEEVLSHYDIMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGW 320 (479)
T ss_dssp HHHTGGGSCCEEEEECTTCCHHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99987347620220014775576666306887652421573210123321574212404566776667777664023466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~nhd~~~~~~~~~~~~~~~~~~~~~~~~~l~t~pGiP~IyyGdEiG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 400 (479)
T d1uoka2 321 NSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMERG 400 (479)
T ss_dssp CEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCCHHHHHHHHHHHHTSC
T ss_pred CCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC
T ss_conf 52001356555311224861777999999999999847997463055113776888888676158776533078887626
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~~~~~~~~~~~~~rd~~R~Pm~W~~~~~~gFs~~~~w~~~~~~~~~~nv~~q~~~~~S~l~~~r~Li~lRk~~pal~~ 479 (479)
T d1uoka2 401 EDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVY 479 (479)
T ss_dssp CCHHHHHHHHHHHCGGGGTSCCCCCSSTTTTSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHHHHCHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 7889997651103788887885789999998889986887896652526998866865699999999999746976509
|
| >d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Oligo-1,6, glucosidase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=36228.94 Aligned_cols=1 Identities=0% Similarity=-1.524 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~W~~~~viYei~~~~F~d~~~~~~Gd~~gi~~kLdYLk~LGv~~I~l~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~d 80 (479)
T d1uoka2 1 MEKQWWKESVVYQIYPRSFMDSNGDGIGDLRGIISKLDYLKELGIDVIWLSPVYESPNDDNGYDISDYCKIMNEFGTMED 80 (479)
T ss_dssp CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHH
T ss_pred CCCHHHCCCEEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 97302135758999714421799998749999998459999749997997987379999999685466775713399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (479)
T d1uoka2 81 WDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYL 160 (479)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHTTCTTCTTGGGBCEECCSSSSCSSCBBCTTSSBSEEEETTTTEEEE
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999987898996664234444420222223204776566310156556767677666678875434445675121
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~dln~~~~~v~~~i~~~~~~W~e~gvDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (479)
T d1uoka2 161 HLFSKKQPDLNWDNEKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHKHFMNGPNIHKYLHEM 240 (479)
T ss_dssp CSSCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCCCTTCCCCCCCCSSCBCCGGGTTTCTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 14577762015678899999999999999769977543320011022367655543201133412313671688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
T d1uoka2 241 NEEVLSHYDIMTVGEMPGVTTEEAKLYTGEERKELQMVFQFEHMDLDSGEGGKWDVKPCSLLTLKENLTKWQKALEHTGW 320 (479)
T ss_dssp HHHTGGGSCCEEEEECTTCCHHHHHHHHCGGGCSCSCEECCGGGSTTEETTEEEEECCCCHHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99987347620220014775576666306887652421573210123321574212404566776667777664023466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~nhd~~~~~~~~~~~~~~~~~~~~~~~~~l~t~pGiP~IyyGdEiG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 400 (479)
T d1uoka2 321 NSLYWNNHDQPRVVSRFGNDGMYRIESAKMLATVLHMMKGTPYIYQGEEIGMTNVRFESIDEYRDIETLNMYKEKVMERG 400 (479)
T ss_dssp CEECSCCTTSCCHHHHTSCSSTTHHHHHHHHHHHHHTSSSEEEEETTGGGTCCCCCCSSGGGCCCHHHHHHHHHHHHTSC
T ss_pred CCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC
T ss_conf 52001356555311224861777999999999999847997463055113776888888676158776533078887626
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~~~~~~~~~~~rd~~R~Pm~W~~~~~~gFs~~~~w~~~~~~~~~~nv~~q~~~~~S~l~~~r~Li~lRk~~pal~~ 479 (479)
T d1uoka2 401 EDIEKVMQSIYIKGRDNARTPMQWDDQNHAGFTTGEPWITVNPNYKEINVKQAIQNKDSIFYYYKKLIELRKNNEIVVY 479 (479)
T ss_dssp CCHHHHHHHHHHHCGGGGTSCCCCCSSTTTTSCSSCCSSCCCGGGGTSSHHHHHHCTTSHHHHHHHHHHHHHHCHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 7889997651103788887885789999998889986887896652526998866865699999999999746976509
|
| >d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Sema domain family: Sema domain domain: Semaphorin 4d species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=36152.53 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~pr~~~~~~~~~~~~f~~~~~~~~~~l~lD~~~~~lyVGA~n~ly~L~~~~l~~~~~~~~~~~~~~~~~~C~~~g~~ 80 (478)
T d1olza2 1 FAPIPRITWEHREVHLVQFHEPDIYNYSALLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKS 80 (478)
T ss_dssp CCCCCSEEECTTTSCCEEECCTTCCCCCEEEECTTSSEEEEEEBTEEEEEETTEEEEEEEEEECCCCHHHHHHHHHTTCC
T ss_pred CCCCCCEEEECCCCCEEEECCCCCCCCCEEEECCCCCEEEEEEECEEEEECCCCCCCCCEEEECCCCCCCHHHHHHCCCC
T ss_conf 99887177221784358987899646354998289998999875649997563156653177737995434456225899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~c~N~ikvL~~~~~~~L~vCGT~a~qp~C~~~~l~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~g~lY~gt~~~~~~ 160 (478)
T d1olza2 81 KQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGELYSGTSYNFLG 160 (478)
T ss_dssp TTTTSSCBEEEEEECSSSEEEEEECTTTSCEEEEEETTTTEECCCCEECTTTSCSSTTSCEEEEEETTEEEEEEESSTTS
T ss_pred CCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCEEEEEEECCCCC
T ss_conf 75557660799987589838996377778743499546532146445776016888555755898789188988647678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~i~r~~~~~~~~t~~~~~~l~~p~fv~~~~i~~~~~~~f~~~~~vYFff~e~~~e~~~~~~~~~SRvaRvCk~D~GG 240 (478)
T d1olza2 161 SEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGG 240 (478)
T ss_dssp CSEEEEEECSSCCBCCCSSTTTCSSCEEEEEEEECCCC----CCCCEEEEEEEEECSSCBCSSCCEEEEEEEEETTCCCC
T ss_pred CCCEEEECCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEHHCCCCCCC
T ss_conf 98527852788875002234402578157876651456664357999999998773147777742662020121478677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~l~~~wtSy~ka~L~Cs~~~~~~~yn~lq~a~~~~~~~~~~~vly~vFst~~~~~~~SAvC~fsl~~I~~~F~~~~~~ 320 (478)
T d1olza2 241 LRTLQKKWTSFLKARLICSRPDSGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYM 320 (478)
T ss_dssp SSSSTTSCSSCEEEEECCEEGGGTEECCEEEEEEEECCTTCSSCEEEEEEECSSSCSSEEEEEEEEHHHHHHHHHHSCBE
T ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHCCHH
T ss_conf 62022352278888798245899988751358999517998886899997378888886289995799999998624011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~f~~~~plm~~~V~p~~~~pll~~~~~~~T~I 400 (478)
T d1olza2 321 QSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQI 400 (478)
T ss_dssp EEECCSTTCCEEEECCSCCCSSCTTCCCCHHHHTTTCCSGGGSCHHHHHHHHHCCEEEEEECCGGGSCSEEEESCCEEEE
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCEEEE
T ss_conf 11577887611030378677677755578844324447776698543001002677555546667776698569867999
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 aV~~v~~~~~~~~tV~flGT~~G~i~Kvv~~~~~~~~iee~~~~~~~~pV~~~~l~~~~~~~~LyV~t~~~V~kvPla 478 (478)
T d1olza2 401 VVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLA 478 (478)
T ss_dssp EEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEEESC
T ss_pred EEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEECCCEEEEEECC
T ss_conf 998773378977899999889966999997289843899998637998502479424789858999838828998789
|
| >d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Sema domain family: Sema domain domain: Semaphorin 4d species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=36149.05 Aligned_cols=1 Identities=100% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~pr~~~~~~~~~~~~f~~~~~~~~~~l~lD~~~~~lyVGA~n~ly~L~~~~l~~~~~~~~~~~~~~~~~~C~~~g~~ 80 (478)
T d1olza2 1 FAPIPRITWEHREVHLVQFHEPDIYNYSALLLSEDKDTLYIGAREAVFAVNALNISEKQHEVYWKVSEDKKAKCAEKGKS 80 (478)
T ss_dssp CCCCCSEEECTTTSCCEEECCTTCCCCCEEEECTTSSEEEEEEBTEEEEEETTEEEEEEEEEECCCCHHHHHHHHHTTCC
T ss_pred CCCCCCEEEECCCCCEEEECCCCCCCCCEEEECCCCCEEEEEEECEEEEECCCCCCCCCEEEECCCCCCCHHHHHHCCCC
T ss_conf 99887177221784358987899646354998289998999875649997563156653177737995434456225899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~c~N~ikvL~~~~~~~L~vCGT~a~qp~C~~~~l~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~g~lY~gt~~~~~~ 160 (478)
T d1olza2 81 KQTECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDPAHSYTSVMVDGELYSGTSYNFLG 160 (478)
T ss_dssp TTTTSSCBEEEEEECSSSEEEEEECTTTSCEEEEEETTTTEECCCCEECTTTSCSSTTSCEEEEEETTEEEEEEESSTTS
T ss_pred CCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCEEEEEEECCCCC
T ss_conf 75557660799987589838996377778743499546532146445776016888555755898789188988647678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~i~r~~~~~~~~t~~~~~~l~~p~fv~~~~i~~~~~~~f~~~~~vYFff~e~~~e~~~~~~~~~SRvaRvCk~D~GG 240 (478)
T d1olza2 161 SEPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGG 240 (478)
T ss_dssp CSEEEEEECSSCCBCCCSSTTTCSSCEEEEEEEECCCC----CCCCEEEEEEEEECSSCBCSSCCEEEEEEEEETTCCCC
T ss_pred CCCEEEECCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEHHCCCCCCC
T ss_conf 98527852788875002234402578157876651456664357999999998773147777742662020121478677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~l~~~wtSy~ka~L~Cs~~~~~~~yn~lq~a~~~~~~~~~~~vly~vFst~~~~~~~SAvC~fsl~~I~~~F~~~~~~ 320 (478)
T d1olza2 241 LRTLQKKWTSFLKARLICSRPDSGLVFNVLRDVFVLRSPGLKVPVFYALFTPQLNNVGLSAVCAYNLSTAEEVFSHGKYM 320 (478)
T ss_dssp SSSSTTSCSSCEEEEECCEEGGGTEECCEEEEEEEECCTTCSSCEEEEEEECSSSCSSEEEEEEEEHHHHHHHHHHSCBE
T ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHCCHH
T ss_conf 62022352278888798245899988751358999517998886899997378888886289995799999998624011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~l~f~~~~plm~~~V~p~~~~pll~~~~~~~T~I 400 (478)
T d1olza2 321 QSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQI 400 (478)
T ss_dssp EEECCSTTCCEEEECCSCCCSSCTTCCCCHHHHTTTCCSGGGSCHHHHHHHHHCCEEEEEECCGGGSCSEEEESCCEEEE
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCEEEE
T ss_conf 11577887611030378677677755578844324447776698543001002677555546667776698569867999
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 aV~~v~~~~~~~~tV~flGT~~G~i~Kvv~~~~~~~~iee~~~~~~~~pV~~~~l~~~~~~~~LyV~t~~~V~kvPla 478 (478)
T d1olza2 401 VVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLA 478 (478)
T ss_dssp EEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEEESC
T ss_pred EEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEECCCEEEEEECC
T ss_conf 998773378977899999889966999997289843899998637998502479424789858999838828998789
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=0 Score=36151.45 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~P~W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~kLdyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~d 80 (478)
T d1m53a2 1 EYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMED 80 (478)
T ss_dssp CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHH
T ss_pred CCCCCCCCCEEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99813104858999603530799998649999998458999769998997988789988999686677875712399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
T d1m53a2 81 FDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYL 160 (478)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEE
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999987997993303355535581132202478887422222468776789866655578875545566673003
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~dln~~~~~V~~~i~~~~~~w~e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (478)
T d1m53a2 161 HYFARQQPDLNWDNPKVREDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNR 240 (478)
T ss_dssp CSSCTTCCBBCTTSHHHHHHHHHHHHHHHTTTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEECCCCCCCCCCHHHHHCCCHHHCCCHHHHHHHHHHHH
T ss_conf 67678777423111799999999987777558866624442342026566546623331100232246268999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (478)
T d1m53a2 241 KVLSRYDVATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVGKYGWNT 320 (478)
T ss_dssp HTGGGSCCEEEEECTTCCGGGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHHHHHHTTTCCBE
T ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 87631564145432278788887641466875422234046653001002230354549999999998876503554330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~nhd~~R~~~~~~~~~~~~~~~~~~~~~~lllt~pGiP~iyyGdEiG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 400 (478)
T d1m53a2 321 FFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGFWQDYVQSGKV 400 (478)
T ss_dssp ECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTTCCCCCCCSGGGCCCHHHHHHHHHHTTTTSS
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 10367777630212487267789999999999997378987885540257767776530015773333116888750667
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------------------------~ 1683 (1815)
=
T Consensus 401 ~~~~~~~~~~~~~rd~~R~Pm~W~~~~~~GFs~~~~wl~~~~~~~~~nv~~q~~~~~S~l~~yr~Li~lRk~~paL~~ 478 (478)
T d1m53a2 401 TATEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKMIQLRHHIPALVY 478 (478)
T ss_dssp CHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHHCTTSHHHHHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHCC
T ss_conf 667787640135878887897879999998889986776896652525998856865599999999999853923029
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=100.00 E-value=0 Score=36150.46 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~P~W~~~~viYei~~~~F~d~~~~~~Gd~~Gi~~kLdyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~d 80 (478)
T d1m53a2 1 EYPAWWKEAVFYQIYPRSFKDTNDDGIGDIRGIIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMED 80 (478)
T ss_dssp CCCCHHHHCCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHH
T ss_pred CCCCCCCCCEEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99813104858999603530799998649999998458999769998997988789988999686677875712399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 f~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (478)
T d1m53a2 81 FDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYL 160 (478)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSBCCTTSHHHHHHHHCTTCTTGGGBCEECCSSSSCSSCCBCTTSSBSEEECTTTCCEEE
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999987997993303355535581132202478887422222468776789866655578875545566673003
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~dln~~~~~V~~~i~~~~~~w~e~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (478)
T d1m53a2 161 HYFARQQPDLNWDNPKVREDLYAMLRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNR 240 (478)
T ss_dssp CSSCTTCCBBCTTSHHHHHHHHHHHHHHHTTTCCEEEETTGGGSSCCTTCCCCCHHHHHTHHHHTTCCTTHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEECCCCCCCCCCHHHHHCCCHHHCCCHHHHHHHHHHHH
T ss_conf 67678777423111799999999987777558866624442342026566546623331100232246268999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (478)
T d1m53a2 241 KVLSRYDVATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQIISKMDVTVGKYGWNT 320 (478)
T ss_dssp HTGGGSCCEEEEECTTCCGGGTHHHHCGGGCSCSEEECCTTTTTTBCSSCTTCBCCCCHHHHHHHHHHHHHHHTTTCCBE
T ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 87631564145432278788887641466875422234046653001002230354549999999998876503554330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~nhd~~R~~~~~~~~~~~~~~~~~~~~~~lllt~pGiP~iyyGdEiG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 400 (478)
T d1m53a2 321 FFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIYQGSELGMTNYPFRQLNEFDDIEVKGFWQDYVQSGKV 400 (478)
T ss_dssp ECSCCTTSCCHHHHHSCCSTTTHHHHHHHHHHHHTSSSSEEEEETTTTTTCCCCCCCSGGGCCCHHHHHHHHHHTTTTSS
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 10367777630212487267789999999999997378987885540257767776530015773333116888750667
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~~~~~~~~~~rd~~R~Pm~W~~~~~~GFs~~~~wl~~~~~~~~~nv~~q~~~~~S~l~~yr~Li~lRk~~paL~~ 478 (478)
T d1m53a2 401 TATEFLDNVRLTSRDNSRTPFQWNDTLNAGFTRGKPWFHINPNYVEINAEREETREDSVLNYYKKMIQLRHHIPALVY 478 (478)
T ss_dssp CHHHHHHHHHHHCGGGGCSCCCCSSSGGGGSCSSCCSSCCCGGGGTSCHHHHHHCTTSHHHHHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHCC
T ss_conf 667787640135878887897879999998889986776896652525998856865599999999999853923029
|
| >d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Purine and uridine phosphorylases family: Purine and uridine phosphorylases domain: AMP nucleosidase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=36085.90 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~av~~l~~ly~~~~~~lr~~~~~~~~~g~~p~~~~r~~~~~~YP~l~~~~~~~~~~~~~~~~fg~v~~pG~y~ttv 80 (477)
T d1t8sa_ 1 LTPAQALDKLDALYEQSVVALRNAIGNYITSGELPDENARKQGLFVYPSLTVTWDGSTTNPPKTRAFGRFTHAGSYTTTI 80 (477)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTTSSEEEEEEEEECSCCSSCCSSCSSSCCSSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCEEEEC
T ss_conf 98899999999999999999999999998179999833021025547769999567667887655665556786013532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 TrP~lf~~Yl~eQ~~lL~~n~~~~v~vg~S~~~iP~~f~~~~~~~~~~~~~~~~l~~~F~~pdL~~~~D~i~~g~~~~~~ 160 (477)
T d1t8sa_ 81 TRPTLFRSYLNEQLTLLYQDYGAHISVQPSQHEIPYPYVIDGSELTLDRSMSAGLTRYFPTTELAQIGDETADGIYHPTE 160 (477)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHCCEEEEEEEEEECCGGGGC------CCHHHHHHHHHHSCCC------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 38899999999999999983896289834886367532236775566743344411147886623366642258658888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~pl~~f~~~r~d~s~~rl~~ytg~~~~~f~~~il~tn~~~yv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (477)
T d1t8sa_ 161 FSPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPDSPYIALSCAGGNWITAETEAPE 240 (477)
T ss_dssp CEESSSSCHHHHHHHHHHHHHHHTSCGGGCCSEEEEESCTHHHHHHHHHHHHHHHCTTSSEEEEEETTSCEEETTCSCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEECCCCCCC
T ss_conf 86866567888887886520002899699387377738578999999976676337898854875389826725767864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~qmp~yhl~~~dG~~Itiv~~GIG~~nAA~~tdlLa~lgpk~II~iGtaGGL~~~lkiGDvVIa~aair~ 320 (477)
T d1t8sa_ 241 EAISDLAWKKHQMPAWHLITADGQGITLVNIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRD 320 (477)
T ss_dssp GSSCTTHHHHCSSCEEEEEETTSCCEEEEECCSSHHHHHHHHHHHGGGCCSEEEECCEEEECSTTCCTTCEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCEEEEEEEEEC
T ss_conf 33333322345431123205899758999568888999999999997399899993661225799968979998689966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 Dgts~~y~p~e~Papa~~ev~~al~~a~~~v~~~~~~el~~~~~tG~V~TtD~f~~e~~~~~~~~~~~~~gAlAVDMEsA 400 (477)
T d1t8sa_ 321 DHVLDAVLPPDIPIPSIAEVQRALYDATKLVSGRPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESA 400 (477)
T ss_dssp CCTTTTTSCTTSCCCCCHHHHHHHHHHHHHHSSCCGGGGGGTEEEEEEEEESCTTGGGGHHHHHHHHHHHTEEEEESSHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEHHHHH
T ss_conf 88630236674055788889999999999999867887198569867971687600363678999998569589747699
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 AIAaVa~~~~VP~gaLl~VSD~pl~ge~k~~~~a~~~~~~~v~~hl~igI~a~~~L~~~~e~l~~rklr~f~e~~f~ 477 (477)
T d1t8sa_ 401 TIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR 477 (477)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECTTSSCCC----------CHHHHHHHHHHHHHHHHHHTTTTTCCSTTCCTTCCSCC
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999998399689999997898787766702015689999999999999999998865665321002557788899
|
| >d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Purine and uridine phosphorylases family: Purine and uridine phosphorylases domain: AMP nucleosidase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=36084.45 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~av~~l~~ly~~~~~~lr~~~~~~~~~g~~p~~~~r~~~~~~YP~l~~~~~~~~~~~~~~~~fg~v~~pG~y~ttv 80 (477)
T d1t8sa_ 1 LTPAQALDKLDALYEQSVVALRNAIGNYITSGELPDENARKQGLFVYPSLTVTWDGSTTNPPKTRAFGRFTHAGSYTTTI 80 (477)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTTSSEEEEEEEEECSCCSSCCSSCSSSCCSSSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCEEEEC
T ss_conf 98899999999999999999999999998179999833021025547769999567667887655665556786013532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 TrP~lf~~Yl~eQ~~lL~~n~~~~v~vg~S~~~iP~~f~~~~~~~~~~~~~~~~l~~~F~~pdL~~~~D~i~~g~~~~~~ 160 (477)
T d1t8sa_ 81 TRPTLFRSYLNEQLTLLYQDYGAHISVQPSQHEIPYPYVIDGSELTLDRSMSAGLTRYFPTTELAQIGDETADGIYHPTE 160 (477)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHCCEEEEEEEEEECCGGGGC------CCHHHHHHHHHHSCCC------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 38899999999999999983896289834886367532236775566743344411147886623366642258658888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~pl~~f~~~r~d~s~~rl~~ytg~~~~~f~~~il~tn~~~yv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (477)
T d1t8sa_ 161 FSPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPDSPYIALSCAGGNWITAETEAPE 240 (477)
T ss_dssp CEESSSSCHHHHHHHHHHHHHHHTSCGGGCCSEEEEESCTHHHHHHHHHHHHHHHCTTSSEEEEEETTSCEEETTCSCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEECCCCCCC
T ss_conf 86866567888887886520002899699387377738578999999976676337898854875389826725767864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~qmp~yhl~~~dG~~Itiv~~GIG~~nAA~~tdlLa~lgpk~II~iGtaGGL~~~lkiGDvVIa~aair~ 320 (477)
T d1t8sa_ 241 EAISDLAWKKHQMPAWHLITADGQGITLVNIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRD 320 (477)
T ss_dssp GSSCTTHHHHCSSCEEEEEETTSCCEEEEECCSSHHHHHHHHHHHGGGCCSEEEECCEEEECSTTCCTTCEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCEEEEEEEEEC
T ss_conf 33333322345431123205899758999568888999999999997399899993661225799968979998689966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Dgts~~y~p~e~Papa~~ev~~al~~a~~~v~~~~~~el~~~~~tG~V~TtD~f~~e~~~~~~~~~~~~~gAlAVDMEsA 400 (477)
T d1t8sa_ 321 DHVLDAVLPPDIPIPSIAEVQRALYDATKLVSGRPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESA 400 (477)
T ss_dssp CCTTTTTSCTTSCCCCCHHHHHHHHHHHHHHSSCCGGGGGGTEEEEEEEEESCTTGGGGHHHHHHHHHHHTEEEEESSHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEHHHHH
T ss_conf 88630236674055788889999999999999867887198569867971687600363678999998569589747699
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 AIAaVa~~~~VP~gaLl~VSD~pl~ge~k~~~~a~~~~~~~v~~hl~igI~a~~~L~~~~e~l~~rklr~f~e~~f~ 477 (477)
T d1t8sa_ 401 TIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR 477 (477)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECTTSSCCC----------CHHHHHHHHHHHHHHHHHHTTTTTCCSTTCCTTCCSCC
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999998399689999997898787766702015689999999999999999998865665321002557788899
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=36084.14 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 g~~~~~~dst~l~~~~~~IR~R~IpWe~~~Rs~~Ite~dl~~Ik~~dk~~~~~~r~~~l~~~~~~~~~~~~g~~~~~~~l 80 (477)
T d1ho8a_ 1 GATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLI 80 (477)
T ss_dssp CCCCCSCSCHHHHHHHHHHHHSCCCHHHHHHTTSSCHHHHHHHHHHHHHHHCC-----------------CSSTTHHHHH
T ss_pred CCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHCCCCHHHHHHH
T ss_conf 99725634577899999996789983888973778999999999996523177888776203013344304648999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~ 160 (477)
T d1ho8a_ 81 HLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLV 160 (477)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99860671789999999999987237323678988763732136788873157605899998999999984565354347
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Q 240 (477)
T d1ho8a_ 161 EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQ 240 (477)
T ss_dssp HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHH
T ss_conf 88877569999851213232489999999988267507899988132217889999998742565420000368885379
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 l~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~ 320 (477)
T d1ho8a_ 241 LQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT 320 (477)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999999975897899987732678999999988631778999999999998621222335678999997151689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~l 400 (477)
T d1ho8a_ 321 VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIEL 400 (477)
T ss_dssp HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99974399997789999999999999988850759999999954987777876772589999986241354899999999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 L~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~nw~ 477 (477)
T d1ho8a_ 401 LQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 477 (477)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 86204455554578823331335007799997853367998828399999886499979999999999999985079
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=36082.05 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 g~~~~~~dst~l~~~~~~IR~R~IpWe~~~Rs~~Ite~dl~~Ik~~dk~~~~~~r~~~l~~~~~~~~~~~~g~~~~~~~l 80 (477)
T d1ho8a_ 1 GATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSSNNAHSGFKVNGKTLIPLI 80 (477)
T ss_dssp CCCCCSCSCHHHHHHHHHHHHSCCCHHHHHHTTSSCHHHHHHHHHHHHHHHCC-----------------CSSTTHHHHH
T ss_pred CCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHCCCCHHHHHHH
T ss_conf 99725634577899999996789983888973778999999999996523177888776203013344304648999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~ 160 (477)
T d1ho8a_ 81 HLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLV 160 (477)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99860671789999999999987237323678988763732136788873157605899998999999984565354347
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Q 240 (477)
T d1ho8a_ 161 EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQ 240 (477)
T ss_dssp HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHH
T ss_conf 88877569999851213232489999999988267507899988132217889999998742565420000368885379
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~ 320 (477)
T d1ho8a_ 241 LQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT 320 (477)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999999975897899987732678999999988631778999999999998621222335678999997151689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~l 400 (477)
T d1ho8a_ 321 VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIEL 400 (477)
T ss_dssp HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99974399997789999999999999988850759999999954987777876772589999986241354899999999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 L~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~nw~ 477 (477)
T d1ho8a_ 401 LQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTFK 477 (477)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 86204455554578823331335007799997853367998828399999886499979999999999999985079
|
| >d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: Nitrogenase iron-molybdenum protein domain: Nitrogenase iron-molybdenum protein, alpha chain species: Azotobacter vinelandii [TaxId: 354]
Probab=100.00 E-value=0 Score=36081.71 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~rgCa~~Ga~~vv~~~I~Dav~ivH 80 (477)
T d1m1na_ 1 MSREEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCIISNKKSQPGLMTIRGCAYAGSKGVVWGPIKDMIHISH 80 (477)
T ss_dssp CCHHHHHHHHHHHHTTSCHHHHHHHHTTEEECCTTCCCGGGTCCCSCCCCTTSCBCCCCHHHHHCCCCCTTCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 97678999999998768876677774333026877656542335676778975776670877369997245676699867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 Gp~GCa~y~~~~~~~~~~~~~~~~~~~~~~~sT~l~E~diVfGG~~kL~~~I~ei~~~~~~pk~I~V~sTC~~~lIGDDi 160 (477)
T d1m1na_ 81 GPVGCGQYSRAGRRNYYIGTTGVNAFVTMNFTSDFQEKDIVFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDI 160 (477)
T ss_dssp SSSHHHHHTTTCSCBCCCSCBTTTBCTTCCEECCCCHHHHHHCSHHHHHHHHHHHHHHCTTCCCEEEEECTHHHHHTCCH
T ss_pred CCHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCH
T ss_conf 77000056145776514576664333665551468811300684888999999999848998789997886799986389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~v~~~~~~~~~~~Vi~v~t~Gf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNiiG~~~~~gD~~eik~lLe 240 (477)
T d1m1na_ 161 ESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLE 240 (477)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTSSSSHHHHHHHHHHHHHHHTTTTTTTCCCSCCCTTEEEEEEECCBTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99999988873894799966875665225799999999999853045776666678761343388787416999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~Gi~v~~~~~g~~s~eei~~~~~A~lNlv~~~~~~~~~A~~Leek~GiP~~~~~~~G~~~T~~~Lr~ia~~~g~~i~~~ 320 (477)
T d1m1na_ 241 EMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESIQKK 320 (477)
T ss_dssp HTTCEEEEEEETTCCHHHHHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HCCCCEEEECCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 71687589768999889998611142665506688999999999862755220446750579999999999848973056
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~e~~i~~e~~~~~~~l~~~r~~l~Gkrv~i~~~~~~~~~l~~~l~elGmevv~~~~~~~~~~d~~~~~~~~~~~~~i~~d 400 (477)
T d1m1na_ 321 CEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDD 400 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEEEESSCCHHHHHTTTTTSCTTCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEECC
T ss_conf 89999989999999999998762488279966843489999999987997889861577767899999866988689568
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~el~~~i~~~~pDL~ig~~~~k~~a~k~gIP~~~~~~~dr~gp~~GY~G~~~la~~i~~al~~P~w~~~~~p~~ 477 (477)
T d1m1na_ 401 VTGYEFEEFVKRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNPCWKKLQAPWE 477 (477)
T ss_dssp CBHHHHHHHHHHHCCSEEEECHHHHHHHHHTTCCEEESSSGGGCCCCSHHHHHHHHHHHHHHHHTCGGGGCSSCTTC
T ss_pred CCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCC
T ss_conf 99999999998659999997850589999819996217753458887718889999999999984924575359999
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=36080.37 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~y~~~~~~~~c~~g~~l~~~~d~~~~~~~~~~~~~ 80 (477)
T d1e5xa_ 1 IETAVKPPHRTEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWR 80 (477)
T ss_dssp CCCCCCTTCCHHHHHCCC------CCCCCCCEEEEESSCSSCCCBCTTSCCCBCC----CBEEEEECHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHCCCCHHHHH
T ss_conf 98876898875310043540267777775667778867998987755864432778999868874365665036505668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~r~~~~~~~~~~g~wr~~~~~lp~~~~~~~v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~ 160 (477)
T d1e5xa_ 81 DLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTV 160 (477)
T ss_dssp HHHHTTTTCCCTTTTSTTGGGGGGTCTTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 88743345567865687434212118989998801058887850783022576388762899977889886408999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g~~dda~~~~~ 240 (477)
T d1e5xa_ 161 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIR 240 (477)
T ss_dssp HHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999985633678646996367569999999998518974998278875799999998527654222357225677764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 e~a~~~~~~~~~~~N~~~~~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~ 320 (477)
T d1e5xa_ 241 EITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAAN 320 (477)
T ss_dssp HHHHHSCEEEGGGSHHHHHHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETT
T ss_pred HHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 40123320003543222100256789999986345431121101467753046788888876327666676378872230
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~T~a~~i~i~~p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~l~~~eGi~vePssA~al 400 (477)
T d1e5xa_ 321 ANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVAL 400 (477)
T ss_dssp SSTHHHHHHTTTTTCCC----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCEECHHHHHHH
T ss_conf 15678898718874445666553454331453225488999885058617856899999999999987968876789999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 Aal~kl~~~g~i~~~~~VVvl~Tg~glKf~~~~~~~~~~~~pd~~~~~~~~~~~v~~~~~av~~~i~~~~~~n~~~~ 477 (477)
T d1e5xa_ 401 TALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGSNTLTS 477 (477)
T ss_dssp HHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHHHHHHTTCCSSCCCTTCCCCEEEESCHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998388899994899927670027789998615679744777066874478889999999999842214679
|
| >d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: Nitrogenase iron-molybdenum protein domain: Nitrogenase iron-molybdenum protein, alpha chain species: Azotobacter vinelandii [TaxId: 354]
Probab=100.00 E-value=0 Score=36079.39 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~rgCa~~Ga~~vv~~~I~Dav~ivH 80 (477)
T d1m1na_ 1 MSREEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCIISNKKSQPGLMTIRGCAYAGSKGVVWGPIKDMIHISH 80 (477)
T ss_dssp CCHHHHHHHHHHHHTTSCHHHHHHHHTTEEECCTTCCCGGGTCCCSCCCCTTSCBCCCCHHHHHCCCCCTTCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
T ss_conf 97678999999998768876677774333026877656542335676778975776670877369997245676699867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Gp~GCa~y~~~~~~~~~~~~~~~~~~~~~~~sT~l~E~diVfGG~~kL~~~I~ei~~~~~~pk~I~V~sTC~~~lIGDDi 160 (477)
T d1m1na_ 81 GPVGCGQYSRAGRRNYYIGTTGVNAFVTMNFTSDFQEKDIVFGGDKKLAKLIDEVETLFPLNKGISVQSECPIGLIGDDI 160 (477)
T ss_dssp SSSHHHHHTTTCSCBCCCSCBTTTBCTTCCEECCCCHHHHHHCSHHHHHHHHHHHHHHCTTCCCEEEEECTHHHHHTCCH
T ss_pred CCHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCH
T ss_conf 77000056145776514576664333665551468811300684888999999999848998789997886799986389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~v~~~~~~~~~~~Vi~v~t~Gf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNiiG~~~~~gD~~eik~lLe 240 (477)
T d1m1na_ 161 ESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLE 240 (477)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTSSSSHHHHHHHHHHHHHHHTTTTTTTCCCSCCCTTEEEEEEECCBTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99999988873894799966875665225799999999999853045776666678761343388787416999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~Gi~v~~~~~g~~s~eei~~~~~A~lNlv~~~~~~~~~A~~Leek~GiP~~~~~~~G~~~T~~~Lr~ia~~~g~~i~~~ 320 (477)
T d1m1na_ 241 EMGLRCVAQWSGDGSISEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKTIESLRAIAAKFDESIQKK 320 (477)
T ss_dssp HTTCEEEEEEETTCCHHHHHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HCCCCEEEECCCCCCHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 71687589768999889998611142665506688999999999862755220446750579999999999848973056
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~e~~i~~e~~~~~~~l~~~r~~l~Gkrv~i~~~~~~~~~l~~~l~elGmevv~~~~~~~~~~d~~~~~~~~~~~~~i~~d 400 (477)
T d1m1na_ 321 CEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDD 400 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEEEESSCCHHHHHTTTTTSCTTCEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEECC
T ss_conf 89999989999999999998762488279966843489999999987997889861577767899999866988689568
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~el~~~i~~~~pDL~ig~~~~k~~a~k~gIP~~~~~~~dr~gp~~GY~G~~~la~~i~~al~~P~w~~~~~p~~ 477 (477)
T d1m1na_ 401 VTGYEFEEFVKRIKPDLIGSGIKEKFIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNPCWKKLQAPWE 477 (477)
T ss_dssp CBHHHHHHHHHHHCCSEEEECHHHHHHHHHTTCCEEESSSGGGCCCCSHHHHHHHHHHHHHHHHTCGGGGCSSCTTC
T ss_pred CCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCC
T ss_conf 99999999998659999997850589999819996217753458887718889999999999984924575359999
|
| >d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Metabotropic glutamate receptor subtype 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=36078.93 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~Gd~~iGGlFp~h~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a 80 (477)
T d1ewka_ 1 RSVARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVA 80 (477)
T ss_dssp CCCEEECCSEEEEEEECSBCCCCTTTGGGTCCCCBCTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHH
T ss_pred CCCEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHH
T ss_conf 97177179989999988847577777886555463542358999999999999858997689988979999758984799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~ 160 (477)
T d1ewka_ 81 LEQSIEFIRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDK 160 (477)
T ss_dssp HHHHHHHHC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
T ss_conf 99999999852213321246653105687646653456644999898741567888887521258263355588455664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~ 240 (477)
T d1ewka_ 161 TLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLR 240 (477)
T ss_dssp TTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHH
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 54886498006613468999999997298689999851645778899999999876937999861357776026788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~l~~~~~~~rVIv~~~~~~~~~~ll~~a~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~ 320 (477)
T d1ewka_ 241 KLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFL 320 (477)
T ss_dssp HHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHT
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 77641357508998147899999999999757657743999634345312203444335762576532433166899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~ 400 (477)
T d1ewka_ 321 KLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH 400 (477)
T ss_dssp TCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 54756577886799999998588765223467652223452221345334536899999999999999999987237787
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~~~~y~I~n~q~~~~~~~~~~~VG~w~~~~l~i~~~~I 477 (477)
T d1ewka_ 401 VGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNIDDYKI 477 (477)
T ss_dssp SSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCCCEEEEEEEECSSSCEEEEEEEEEETTEEEECTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHCCEEECCCCCEEEECCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 77665787689999999982374178999989979999803307999999878996889998998489762061109
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=36077.05 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~y~~~~~~~~c~~g~~l~~~~d~~~~~~~~~~~~~ 80 (477)
T d1e5xa_ 1 IETAVKPPHRTEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEALKRFDGAYWR 80 (477)
T ss_dssp CCCCCCTTCCHHHHHCCC------CCCCCCCEEEEESSCSSCCCBCTTSCCCBCC----CBEEEEECHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHCCCCHHHHH
T ss_conf 98876898875310043540267777775667778867998987755864432778999868874365665036505668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~r~~~~~~~~~~g~wr~~~~~lp~~~~~~~v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~ 160 (477)
T d1e5xa_ 81 DLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTV 160 (477)
T ss_dssp HHHHTTTTCCCTTTTSTTGGGGGGTCTTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 88743345567865687434212118989998801058887850783022576388762899977889886408999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g~~dda~~~~~ 240 (477)
T d1e5xa_ 161 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIR 240 (477)
T ss_dssp HHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999985633678646996367569999999998518974998278875799999998527654222357225677764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 e~a~~~~~~~~~~~N~~~~~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~ 320 (477)
T d1e5xa_ 241 EITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAAN 320 (477)
T ss_dssp HHHHHSCEEEGGGSHHHHHHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETT
T ss_pred HHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 40123320003543222100256789999986345431121101467753046788888876327666676378872230
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~T~a~~i~i~~p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~l~~~eGi~vePssA~al 400 (477)
T d1e5xa_ 321 ANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFICPHTGVAL 400 (477)
T ss_dssp SSTHHHHHHTTTTTCCC----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCEECHHHHHHH
T ss_conf 15678898718874445666553454331453225488999885058617856899999999999987968876789999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 Aal~kl~~~g~i~~~~~VVvl~Tg~glKf~~~~~~~~~~~~pd~~~~~~~~~~~v~~~~~av~~~i~~~~~~n~~~~ 477 (477)
T d1e5xa_ 401 TALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGSNTLTS 477 (477)
T ss_dssp HHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHHHHHHTTCCSSCCCTTCCCCEEEESCHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998388899994899927670027789998615679744777066874478889999999999842214679
|
| >d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Metabotropic glutamate receptor subtype 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=36076.39 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~Gd~~iGGlFp~h~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dtc~~~~~a 80 (477)
T d1ewka_ 1 RSVARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVA 80 (477)
T ss_dssp CCCEEECCSEEEEEEECSBCCCCTTTGGGTCCCCBCTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHH
T ss_pred CCCEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHH
T ss_conf 97177179989999988847577777886555463542358999999999999858997689988979999758984799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~ 160 (477)
T d1ewka_ 81 LEQSIEFIRDSLISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDK 160 (477)
T ss_dssp HHHHHHHHC-----------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
T ss_conf 99999999852213321246653105687646653456644999898741567888887521258263355588455664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~ 240 (477)
T d1ewka_ 161 TLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLR 240 (477)
T ss_dssp TTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHH
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 54886498006613468999999997298689999851645778899999999876937999861357776026788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~l~~~~~~~rVIv~~~~~~~~~~ll~~a~~~g~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~ 320 (477)
T d1ewka_ 241 KLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFL 320 (477)
T ss_dssp HHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHT
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 77641357508998147899999999999757657743999634345312203444335762576532433166899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~ 400 (477)
T d1ewka_ 321 KLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH 400 (477)
T ss_dssp TCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTCCSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 54756577886799999998588765223467652223452221345334536899999999999999999987237787
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~v~F~G~tG~~v~Fd~nGd~~~~y~I~n~q~~~~~~~~~~~VG~w~~~~l~i~~~~I 477 (477)
T d1ewka_ 401 VGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNIDDYKI 477 (477)
T ss_dssp SSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCCCEEEEEEEECSSSCEEEEEEEEEETTEEEECTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHCCEEECCCCCEEEECCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 77665787689999999982374178999989979999803307999999878996889998998489762061109
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=0 Score=36074.86 Aligned_cols=1 Identities=0% Similarity=-0.295 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (477)
T d1rzua_ 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (477)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCEEEEEEECCCCCEEEEEEEEECCEEE
T ss_conf 98999977220633267689999999999997699699996698534465256658999714678547899999899159
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDIvH~h~~~~~l~~~~~~~~~~~~ip~V~ 160 (477)
T d1rzua_ 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPEIPSLL 160 (477)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSSSCCCCEEE
T ss_pred EEECCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99558243046787355766656652188999999887766530256888887993360677889999985478988899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (477)
T d1rzua_ 161 TIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHV 240 (477)
T ss_dssp EESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGG
T ss_pred EEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 98324423467888998862114440654434320568999887764442131199999999875475366566651564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~~ 320 (477)
T d1rzua_ 241 LHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLG 320 (477)
T ss_dssp EEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTT
T ss_pred EEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 79997893401205664533333310456777666389988741446678638999850021588379999999878659
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~l~~~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVas~~GG~ 400 (477)
T d1rzua_ 321 GRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGL 400 (477)
T ss_dssp CEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf 83999936774577899998763587278971547057999998385134886535788899999983998999079997
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~E~v~d~~~~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~a~~~~fsw~~~a~~~~~lY~~ll~ 477 (477)
T d1rzua_ 401 ADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSAGLYAALYSQLIS 477 (477)
T ss_dssp HHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHTC
T ss_pred CCEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 40552487553346787448969999999999999998600799999999999998518999999999999999849
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=0 Score=36071.64 Aligned_cols=1 Identities=0% Similarity=-0.428 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (477)
T d1rzua_ 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (477)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCEEEEEEECCCCCEEEEEEEEECCEEE
T ss_conf 98999977220633267689999999999997699699996698534465256658999714678547899999899159
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDIvH~h~~~~~l~~~~~~~~~~~~ip~V~ 160 (477)
T d1rzua_ 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPEIPSLL 160 (477)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSSSCCCCEEE
T ss_pred EEECCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99558243046787355766656652188999999887766530256888887993360677889999985478988899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (477)
T d1rzua_ 161 TIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHV 240 (477)
T ss_dssp EESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGG
T ss_pred EEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 98324423467888998862114440654434320568999887764442131199999999875475366566651564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~~ 320 (477)
T d1rzua_ 241 LHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLG 320 (477)
T ss_dssp EEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTT
T ss_pred EEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 79997893401205664533333310456777666389988741446678638999850021588379999999878659
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~l~~~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVas~~GG~ 400 (477)
T d1rzua_ 321 GRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGL 400 (477)
T ss_dssp CEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHH
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCC
T ss_conf 83999936774577899998763587278971547057999998385134886535788899999983998999079997
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~E~v~d~~~~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~a~~~~fsw~~~a~~~~~lY~~ll~ 477 (477)
T d1rzua_ 401 ADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSAGLYAALYSQLIS 477 (477)
T ss_dssp HHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHTC
T ss_pred CCEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 40552487553346787448969999999999999998600799999999999998518999999999999999849
|
| >d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Proteus mirabilis [TaxId: 584]
Probab=100.00 E-value=0 Score=36010.06 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~l~hfdreripeR~vHAKG~gA~G~Fevt~d~s~~t~a~~f~~~G 80 (476)
T d1e93a_ 1 KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVG 80 (476)
T ss_dssp CCCBCTTSCBCSCSSSCCBSSTTSCBCTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 96527999776798645205899972367789999987514445754334577154689999887726877646510688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 k~tPv~vRFSt~~G~~~s~D~~rd~RG~AiKf~t~eGn~D~v~nn~PvFfirdp~~F~~~i~a~k~~p~t~~~d~~~~~~ 160 (476)
T d1e93a_ 81 KKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWD 160 (476)
T ss_dssp CEEEEEEEEECSSSCTTSCSSSSSCCEEEEEEEETTEEEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 64308994535888899986678886479999748885114202466135589999899999735488777887477778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 F~~~~Pes~~~~~~l~s~~~~p~s~~~~~~~g~htf~~~n~~G~~~~vK~~~~P~~G~~~l~~eea~~l~g~d~d~l~~d 240 (476)
T d1e93a_ 161 FFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRD 240 (476)
T ss_dssp HHHTCGGGHHHHHHHHSGGGSBSCGGGCCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHH
T ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCHHHHH
T ss_conf 88649767989987615678988667776433114786715797899999787588766689999987247895177789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 L~~~i~~g~~~~w~l~vQl~~~~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~LtL~~~~~n~~~e~eq~aF~P~~lv~Gi~ 320 (476)
T d1e93a_ 241 LFEAIKRGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGIS 320 (476)
T ss_dssp HHHHHHTTCCCEEEEEEEEEEGGGGGTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEE
T ss_pred HHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCCCCEECCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 99999768996589988536855652389887668564456788659814776536874302243223536000458766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~S~Dp~Lq~R~faY~dt~r~RlG~N~~qlPvN~p~~~~~n~~rdG~m~~~~~~~~~~~y~pns~~~~~~~~~~~~~~~~~ 400 (476)
T d1e93a_ 321 FSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSI 400 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHCTTGGGSTTTSCSSCCCCCCCCCTTCCSCCSCSSCCCSSCSSSCSCCCGGGCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 69993122133455887650367770117777887764477758766414788887776888788754689877787037
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~g~~~~~~~~~~~d~f~Q~~~~~~~~~~~~~~~lv~n~~~~l~~~~~~i~~r~~~~~~~vd~~~g~~v~~~l~~~~ 476 (476)
T d1e93a_ 401 EGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVLE 476 (476)
T ss_dssp CSCSSCCCGGGCCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 7777783378988735370799883899999999999999987789999999999999879899999999867689
|
| >d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Proteus mirabilis [TaxId: 584]
Probab=100.00 E-value=0 Score=36007.55 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~l~hfdreripeR~vHAKG~gA~G~Fevt~d~s~~t~a~~f~~~G 80 (476)
T d1e93a_ 1 KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEVG 80 (476)
T ss_dssp CCCBCTTSCBCSCSSSCCBSSTTSCBCTTCHHHHHHHHHHTTCCCCCCSSCCSEEEEEEEEEECSCCTTTCCCGGGSSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 96527999776798645205899972367789999987514445754334577154689999887726877646510688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 k~tPv~vRFSt~~G~~~s~D~~rd~RG~AiKf~t~eGn~D~v~nn~PvFfirdp~~F~~~i~a~k~~p~t~~~d~~~~~~ 160 (476)
T d1e93a_ 81 KKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWD 160 (476)
T ss_dssp CEEEEEEEEECSSSCTTSCSSSSSCCEEEEEEEETTEEEEEEEESSSCCSCSSGGGHHHHHHHHSBCTTTCSBCHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 64308994535888899986678886479999748885114202466135589999899999735488777887477778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 F~~~~Pes~~~~~~l~s~~~~p~s~~~~~~~g~htf~~~n~~G~~~~vK~~~~P~~G~~~l~~eea~~l~g~d~d~l~~d 240 (476)
T d1e93a_ 161 FFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRD 240 (476)
T ss_dssp HHHTCGGGHHHHHHHHSGGGSBSCGGGCCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHH
T ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCHHHHH
T ss_conf 88649767989987615678988667776433114786715797899999787588766689999987247895177789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 L~~~i~~g~~~~w~l~vQl~~~~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~LtL~~~~~n~~~e~eq~aF~P~~lv~Gi~ 320 (476)
T d1e93a_ 241 LFEAIKRGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGIS 320 (476)
T ss_dssp HHHHHHTTCCCEEEEEEEEEEGGGGGTSSSCTTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEE
T ss_pred HHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCCCCEECCCCCCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 99999768996589988536855652389887668564456788659814776536874302243223536000458766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~S~Dp~Lq~R~faY~dt~r~RlG~N~~qlPvN~p~~~~~n~~rdG~m~~~~~~~~~~~y~pns~~~~~~~~~~~~~~~~~ 400 (476)
T d1e93a_ 321 FSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSI 400 (476)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHCTTGGGSTTTSCSSCCCCCCCCCTTCCSCCSCSSCCCSSCSSSCSCCCGGGCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 69993122133455887650367770117777887764477758766414788887776888788754689877787037
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~g~~~~~~~~~~~d~f~Q~~~~~~~~~~~~~~~lv~n~~~~l~~~~~~i~~r~~~~~~~vd~~~g~~v~~~l~~~~ 476 (476)
T d1e93a_ 401 EGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVLE 476 (476)
T ss_dssp CSCSSCCCGGGCCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 7777783378988735370799883899999999999999987789999999999999879899999999867689
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=36007.34 Aligned_cols=1 Identities=0% Similarity=-0.594 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 m~~~~fr~~~~~~~d~i~d~~~~~~~~~v~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~ 80 (476)
T d1js3a_ 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 99899999999999999999975220899999896999974676557689899999999999986779889999905757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR 160 (476)
T d1js3a_ 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (476)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHH
T ss_conf 88987899999999986365544300001599999999999999857872001578777775588827999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~Vv 240 (476)
T d1js3a_ 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVV 240 (476)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99987614355675445566752898420030999999986695378843487778489999999998876599868986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~ 320 (476)
T d1js3a_ 241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRT 320 (476)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHH
T ss_pred ECCCCCCCEEECCHHHHHHHHHHCCCEEEEECCCCHHHHHHCCHHHHHCCCCCCCEEEECCCCCCCCCCCCEEECCCCHH
T ss_conf 04788662121259999899975593799945532235430004665158864424656576565647763000014568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel 400 (476)
T d1js3a_ 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEV 400 (476)
T ss_dssp HHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 88988721805313543466654333432444450467999998888886767999999999999999999855999699
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~lla 476 (476)
T d1js3a_ 401 CAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (476)
T ss_dssp CSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 7799668999971698299999999999419899964249999899999589999999999999999999999739
|
| >d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp (Pandalus borealis) [TaxId: 6703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Alkaline phosphatase domain: Alkaline phosphatase species: Northern shrimp (Pandalus borealis) [TaxId: 6703]
Probab=100.00 E-value=0 Score=36004.14 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~w~~~~~~~~~~~~~~~~~~k~aKNVIl~IgDGMg~~~~taar~~~~g~~g~~~~~~l~~d~~p~~g~~~T~s~d 80 (476)
T d1k7ha_ 1 EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTD 80 (476)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCCCSCCSEEEEEEETTCCHHHHHHHHHHHHHHHTCGGGCCCGGGGSSEEEEEECCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHEEECCCCC
T ss_conf 98868999999999999972554578887699998579999999999998567778876775654227635414046798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~vtDSAa~aTA~atG~KT~ng~igvd~~~~~~~~~~~~~~~~~~~ti~e~A~~~G~~tGlVTT~~ithATPAaf~AH~~ 160 (476)
T d1k7ha_ 81 KQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVA 160 (476)
T ss_dssp CSSCCHHHHHHHHHHSCCCCTTCBSBCTTCCTTCGGGGGCGGGBCCCHHHHHHHTTCEEEEEEEEETTSHHHHTTTCCBS
T ss_pred CCCCCCHHHHHHHHHCEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCC
T ss_conf 98887289999998520147975877887675765444566642011999998749863489635557875304441245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~R~~~~~~~~~~~~~~~~~~~~ia~q~~~~~~~~~~dvilGGG~~~f~p~~~~~~~~~~~~~r~dg~~l~~~~~~~~~~~ 240 (476)
T d1k7ha_ 161 DRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQ 240 (476)
T ss_dssp CTTCSSHHHHHHTTCCTTTSCCHHHHHHHSTTGGGCSEEEEECGGGGSBTTSBCTTTCCBCSBSSCCCHHHHHHHHHHHT
T ss_pred CHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 02103513320001454210478888764057763200268972345654555521122013442123999999876530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~v~~~~~l~~~~~~~~~~~lg~f~~~~~~~~~~~~~~~~PsL~eMt~~AL~~L~~n~~GFfLmVEgg~ID~a~H~ 320 (476)
T d1k7ha_ 241 GATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHA 320 (476)
T ss_dssp TCCEEEECSHHHHHTCCSTTCSEEEEECCSSSCCCTTTCCTTTSCCHHHHHHHHHHHHTTCTTCEEEEEEECHHHHHHHT
T ss_pred CCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHH
T ss_conf 47714774406555246567765556556556984222476579879999999999860589852899732666600224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 nd~~~~i~e~~~fD~AV~~a~~~~~~~~TLiIVTADH~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (476)
T d1k7ha_ 321 NQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHI 400 (476)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSCTTTEEEEEEESSEECEEECSCCCTTCCTTSEEEECTTTCCEEESEEESSBTTCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECCCCCCCCCHHCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 42999999999999999999997454672599984367742002656666420013444555664311243126888533
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~a~v~w~s~~HTg~dVpv~A~Gpga~~f~G~~dNT~I~~~m~~A~~lg~~~~~~~ 476 (476)
T d1k7ha_ 401 TEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD 476 (476)
T ss_dssp CTTSSBCCCCHHHHHCTTCCCCBSSBCSSCCEECSCEEEEEESTTGGGCSSEEETTHHHHHHHHHHTCSSSCCSCC
T ss_pred CCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 4433336764111036442010236787789678366325887881116883501289999999837899987889
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=36003.93 Aligned_cols=1 Identities=100% Similarity=0.004 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~~fr~~~~~~~d~i~d~~~~~~~~~v~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~ 80 (476)
T d1js3a_ 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 99899999999999999999975220899999896999974676557689899999999999986779889999905757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR 160 (476)
T d1js3a_ 81 PTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (476)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHH
T ss_conf 88987899999999986365544300001599999999999999857872001578777775588827999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~Vv 240 (476)
T d1js3a_ 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVV 240 (476)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99987614355675445566752898420030999999986695378843487778489999999998876599868986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~ 320 (476)
T d1js3a_ 241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRT 320 (476)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHH
T ss_pred ECCCCCCCEEECCHHHHHHHHHHCCCEEEEECCCCHHHHHHCCHHHHHCCCCCCCEEEECCCCCCCCCCCCEEECCCCHH
T ss_conf 04788662121259999899975593799945532235430004665158864424656576565647763000014568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel 400 (476)
T d1js3a_ 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEV 400 (476)
T ss_dssp HHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 88988721805313543466654333432444450467999998888886767999999999999999999855999699
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~lla 476 (476)
T d1js3a_ 401 CAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (476)
T ss_dssp CSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 7799668999971698299999999999419899964249999899999589999999999999999999999739
|
| >d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp (Pandalus borealis) [TaxId: 6703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Alkaline phosphatase domain: Alkaline phosphatase species: Northern shrimp (Pandalus borealis) [TaxId: 6703]
Probab=100.00 E-value=0 Score=36000.80 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~w~~~~~~~~~~~~~~~~~~k~aKNVIl~IgDGMg~~~~taar~~~~g~~g~~~~~~l~~d~~p~~g~~~T~s~d 80 (476)
T d1k7ha_ 1 EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTD 80 (476)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCCCSCCSEEEEEEETTCCHHHHHHHHHHHHHHHTCGGGCCCGGGGSSEEEEEECCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHEEECCCCC
T ss_conf 98868999999999999972554578887699998579999999999998567778876775654227635414046798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~vtDSAa~aTA~atG~KT~ng~igvd~~~~~~~~~~~~~~~~~~~ti~e~A~~~G~~tGlVTT~~ithATPAaf~AH~~ 160 (476)
T d1k7ha_ 81 KQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVA 160 (476)
T ss_dssp CSSCCHHHHHHHHHHSCCCCTTCBSBCTTCCTTCGGGGGCGGGBCCCHHHHHHHTTCEEEEEEEEETTSHHHHTTTCCBS
T ss_pred CCCCCCHHHHHHHHHCEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCC
T ss_conf 98887289999998520147975877887675765444566642011999998749863489635557875304441245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~R~~~~~~~~~~~~~~~~~~~~ia~q~~~~~~~~~~dvilGGG~~~f~p~~~~~~~~~~~~~r~dg~~l~~~~~~~~~~~ 240 (476)
T d1k7ha_ 161 DRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQ 240 (476)
T ss_dssp CTTCSSHHHHHHTTCCTTTSCCHHHHHHHSTTGGGCSEEEEECGGGGSBTTSBCTTTCCBCSBSSCCCHHHHHHHHHHHT
T ss_pred CHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 02103513320001454210478888764057763200268972345654555521122013442123999999876530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~v~~~~~l~~~~~~~~~~~lg~f~~~~~~~~~~~~~~~~PsL~eMt~~AL~~L~~n~~GFfLmVEgg~ID~a~H~ 320 (476)
T d1k7ha_ 241 GATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHA 320 (476)
T ss_dssp TCCEEEECSHHHHHTCCSTTCSEEEEECCSSSCCCTTTCCTTTSCCHHHHHHHHHHHHTTCTTCEEEEEEECHHHHHHHT
T ss_pred CCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHH
T ss_conf 47714774406555246567765556556556984222476579879999999999860589852899732666600224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 nd~~~~i~e~~~fD~AV~~a~~~~~~~~TLiIVTADH~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (476)
T d1k7ha_ 321 NQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHI 400 (476)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSCTTTEEEEEEESSEECEEECSCCCTTCCTTSEEEECTTTCCEEESEEESSBTTCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECCCCCCCCCHHCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 42999999999999999999997454672599984367742002656666420013444555664311243126888533
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~a~v~w~s~~HTg~dVpv~A~Gpga~~f~G~~dNT~I~~~m~~A~~lg~~~~~~~ 476 (476)
T d1k7ha_ 401 TEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD 476 (476)
T ss_dssp CTTSSBCCCCHHHHHCTTCCCCBSSBCSSCCEECSCEEEEEESTTGGGCSSEEETTHHHHHHHHHHTCSSSCCSCC
T ss_pred CCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 4433336764111036442010236787789678366325887881116883501289999999837899987889
|
| >d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease virus [TaxId: 12110]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Foot-and-mouth disease virus [TaxId: 12110]
Probab=100.00 E-value=0 Score=35999.87 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 g~i~~~~~~~~~~~~p~KT~i~~S~~~~~~~~~~ePa~Ls~~DpRl~~~~~~d~~~~~~~k~~~~~~~~~~~~l~~a~~~ 80 (476)
T d1u09a_ 1 GLIVDTRDVEERVHVMRKTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRCAAD 80 (476)
T ss_dssp CEEEEEEEEEEEECCCCCCCEEECTTHHHHCCSEEECCCSTTCTTSCTTCCHHHHHHTTCCCCCCCCHHHHHHHHHHHHH
T ss_pred CEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 90013476787787888815643476567998646998899898899998855887517458988998998999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~lt~~eAi~Gi~~~d~m~~~TS~GyP~~~~gk~k~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (476)
T d1u09a_ 81 YASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFACQ 160 (476)
T ss_dssp HHHHHHHHHCSCCCCCCHHHHHHCBTTBCCCCTTSCCCTTGGGGTCCGGGTEETTTTEECHHHHHHHHHHHTTCCCCCEE
T ss_pred HHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999986189889899999963888655789998999886527887500016876751599999999985588760055
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~lKDE~~p~eKv~~gKtR~f~~~p~~~~l~~r~~~~~f~~~~~~~~~~~~~~~vG~n~~~~W~~l~~~l~~~~~~~~~D 240 (476)
T d1u09a_ 161 TFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVD 240 (476)
T ss_dssp EEECCCEEEHHHHHTTCCCEEEECCHHHHHHHHHHHHHHHHHHHHTCBGGGTBCTTCCHHHHHHHHHHHHTTSSEEEEEE
T ss_pred HHHCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 55234657588863698149997998999999999999999998668998887305085510999999841588189500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 yS~FD~s~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~i~~~~v~~v~~GlPSG~~~T~i~NSi~N~i~i~~a~~ 320 (476)
T d1u09a_ 241 YSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALR 320 (476)
T ss_dssp ESSTTTTCCHHHHHHHHHHHSCGGGTCCHHHHHHHHTTTEEEEEEEEEEEEEESSCCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf 15557868899999999999987427877999999975386799898899993776788834662377999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~d~~~~~~YGDD~iis~~~~~~~~~i~~~~~~~G~~~T~~dK~~~~~~~~~~l~~v~FLKR~f~~~~~~~~~~ 400 (476)
T d1u09a_ 321 RHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYK 400 (476)
T ss_dssp HHSSSCCGGGCEEEEETTEEEEEESSCCCHHHHHHHHHTTTCCEEESCCSSSSCCSCCCGGGCEETTEEEEECTTTSCEE
T ss_pred HHCCCCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCEEE
T ss_conf 84477675447999937946983463135999999999819884346456667546776342758774347889898794
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~L~~~sI~~~l~w~r~~~~~~~l~s~~~~a~~hG~~~y~~~~~~~~~~l~~p~y~~l~~~w~~~~~g~~~~~~~~ 476 (476)
T d1u09a_ 401 PVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDAAALEHH 476 (476)
T ss_dssp EEECHHHHHHHHTEEETTCHHHHHHHHHHHHGGGCHHHHHHHHGGGBTTBCCCCHHHHHHHHHHHHCHHHHHHTTC
T ss_pred CCCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 6789999735112278898799999999999974899999999999867058878999999998750762332049
|
| >d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease virus [TaxId: 12110]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Foot-and-mouth disease virus [TaxId: 12110]
Probab=100.00 E-value=0 Score=35998.50 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 g~i~~~~~~~~~~~~p~KT~i~~S~~~~~~~~~~ePa~Ls~~DpRl~~~~~~d~~~~~~~k~~~~~~~~~~~~l~~a~~~ 80 (476)
T d1u09a_ 1 GLIVDTRDVEERVHVMRKTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRCAAD 80 (476)
T ss_dssp CEEEEEEEEEEEECCCCCCCEEECTTHHHHCCSEEECCCSTTCTTSCTTCCHHHHHHTTCCCCCCCCHHHHHHHHHHHHH
T ss_pred CEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 90013476787787888815643476567998646998899898899998855887517458988998998999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~lt~~eAi~Gi~~~d~m~~~TS~GyP~~~~gk~k~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (476)
T d1u09a_ 81 YASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFACQ 160 (476)
T ss_dssp HHHHHHHHHCSCCCCCCHHHHHHCBTTBCCCCTTSCCCTTGGGGTCCGGGTEETTTTEECHHHHHHHHHHHTTCCCCCEE
T ss_pred HHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999986189889899999963888655789998999886527887500016876751599999999985588760055
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~lKDE~~p~eKv~~gKtR~f~~~p~~~~l~~r~~~~~f~~~~~~~~~~~~~~~vG~n~~~~W~~l~~~l~~~~~~~~~D 240 (476)
T d1u09a_ 161 TFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVD 240 (476)
T ss_dssp EEECCCEEEHHHHHTTCCCEEEECCHHHHHHHHHHHHHHHHHHHHTCBGGGTBCTTCCHHHHHHHHHHHHTTSSEEEEEE
T ss_pred HHHCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 55234657588863698149997998999999999999999998668998887305085510999999841588189500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 yS~FD~s~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~~i~~~~v~~v~~GlPSG~~~T~i~NSi~N~i~i~~a~~ 320 (476)
T d1u09a_ 241 YSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALR 320 (476)
T ss_dssp ESSTTTTCCHHHHHHHHHHHSCGGGTCCHHHHHHHHTTTEEEEEEEEEEEEEESSCCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf 15557868899999999999987427877999999975386799898899993776788834662377999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~d~~~~~~YGDD~iis~~~~~~~~~i~~~~~~~G~~~T~~dK~~~~~~~~~~l~~v~FLKR~f~~~~~~~~~~ 400 (476)
T d1u09a_ 321 RHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYK 400 (476)
T ss_dssp HHSSSCCGGGCEEEEETTEEEEEESSCCCHHHHHHHHHTTTCCEEESCCSSSSCCSCCCGGGCEETTEEEEECTTTSCEE
T ss_pred HHCCCCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCEEE
T ss_conf 84477675447999937946983463135999999999819884346456667546776342758774347889898794
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~L~~~sI~~~l~w~r~~~~~~~l~s~~~~a~~hG~~~y~~~~~~~~~~l~~p~y~~l~~~w~~~~~g~~~~~~~~ 476 (476)
T d1u09a_ 401 PVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDAAALEHH 476 (476)
T ss_dssp EEECHHHHHHHHTEEETTCHHHHHHHHHHHHGGGCHHHHHHHHGGGBTTBCCCCHHHHHHHHHHHHCHHHHHHTTC
T ss_pred CCCCHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 6789999735112278898799999999999974899999999999867058878999999998750762332049
|
| >d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Sema domain family: Sema domain domain: Hepatocyte growth factor receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35995.43 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~y~~p~F~~~~~iq~i~~~~~~vyVGArn~iy~L~~~dL~~~~~~~tgP~~ds~~c~~~~~c~~~~~~~~~~~~dN~nki 80 (476)
T d1shyb1 1 KYQLPNFTAETPIQNVILHEHHIFLGATNYIYVLNEEDLQKVAEYKTGPVLEHPDCFPCQDCSSKANLSGGVWKDNINMA 80 (476)
T ss_dssp CCCCCEEECSSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEEEECCCEEECSSSCSSSCCSSSTTCSSCEEECCCEEE
T ss_pred CCCCCEEECCCCCEEEEEECCEEEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEE
T ss_conf 97687053699716899989999998653599946434750367873654567667671113433235787666751699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 Lli~~~~~~~L~~CGTaf~p~C~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~Lyvg~ 160 (476)
T d1shyb1 81 LVVDTYYDDQLISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSSVKDRFINFFVGN 160 (476)
T ss_dssp EEEECSSSSEEEEEESSSSSBEEEEECCSSCSSCSSSSEEECCCCCCSSTTCCTTBCCCTTCEEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEE
T ss_conf 99810789859996189877776762376552212355422234676778878875214301010135676504699977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~s~s~R~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~fV~~F~~~~~vYF~f~e~~~~~~~~~~SRva 240 (476)
T d1shyb1 161 TINSSYFPDHPLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETLDAQTFHTRII 240 (476)
T ss_dssp CCCCCCCTTCCCCSEEEEEECTTSSCEEECSGGGEECCCTTHHHHSCCEEEEEEEETTEEEEEEECCSSTTCSCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEE
T ss_conf 44666787666676420147655430011046633663122334367650712015998999998515556663135899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 RVCk~D~~wtSy~ka~L~Cs~p~~~p~~~~~~~~fN~lQ~~~v~~pg~~La~~l~~~~~~~vlygvFsts~~~~~~~~~~ 320 (476)
T d1shyb1 241 RFCSINSGLHSYMEMPLECILTELVPRGSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSKPDSAEPMDR 320 (476)
T ss_dssp EEECCTTCCCSCEEEEEEEECC---------CCBCCCCCEEEEECCCHHHHHHHTCCTTCCEEEEEEEEECTTSSSEEEE
T ss_pred EEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 97226898633899878874477656667777343215678741764123442177888988999972786788887887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 SAVC~fsl~dI~~~F~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~pl~~~~~~~~~~ 400 (476)
T d1shyb1 321 SAMCAFPIKYVNDFFNKIVNKNNVRCLQHFYGPNHEHCFNRTLLRNSSGCEARRDEYRTEFTTALQRVDLFMGQFSEVLL 400 (476)
T ss_dssp EEEEEEEHHHHHHHHHCC----CBCCCTTTSCSSSTTTTCC-------------CCCCEEBSSCEEEECSSTTTTTTSCE
T ss_pred CEEEEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEE
T ss_conf 67999789999999863321146677762507998767688867788776442477765425840675540112687038
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 Tsi~v~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~Lyv~t~~~V~kvPv 476 (476)
T d1shyb1 401 TSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLLDSHPVSPEVIVEHTLNQNGYTLVITGKKITKIPL 476 (476)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEEECCSSSCCCCSCCEECCSSCEEEEEEEEEETTTEEEEEEEETTEEEEEES
T ss_pred EEEEEEECCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEC
T ss_conf 9999960398489999889967999998489872468999977876470010244346798899997998998109
|
| >d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Sema domain family: Sema domain domain: Hepatocyte growth factor receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35991.76 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~y~~p~F~~~~~iq~i~~~~~~vyVGArn~iy~L~~~dL~~~~~~~tgP~~ds~~c~~~~~c~~~~~~~~~~~~dN~nki 80 (476)
T d1shyb1 1 KYQLPNFTAETPIQNVILHEHHIFLGATNYIYVLNEEDLQKVAEYKTGPVLEHPDCFPCQDCSSKANLSGGVWKDNINMA 80 (476)
T ss_dssp CCCCCEEECSSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEEEECCCEEECSSSCSSSCCSSSTTCSSCEEECCCEEE
T ss_pred CCCCCEEECCCCCEEEEEECCEEEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEE
T ss_conf 97687053699716899989999998653599946434750367873654567667671113433235787666751699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 Lli~~~~~~~L~~CGTaf~p~C~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~Lyvg~ 160 (476)
T d1shyb1 81 LVVDTYYDDQLISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSSVKDRFINFFVGN 160 (476)
T ss_dssp EEEECSSSSEEEEEESSSSSBEEEEECCSSCSSCSSSSEEECCCCCCSSTTCCTTBCCCTTCEEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEE
T ss_conf 99810789859996189877776762376552212355422234676778878875214301010135676504699977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~s~s~R~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~fV~~F~~~~~vYF~f~e~~~~~~~~~~SRva 240 (476)
T d1shyb1 161 TINSSYFPDHPLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETLDAQTFHTRII 240 (476)
T ss_dssp CCCCCCCTTCCCCSEEEEEECTTSSCEEECSGGGEECCCTTHHHHSCCEEEEEEEETTEEEEEEECCSSTTCSCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEE
T ss_conf 44666787666676420147655430011046633663122334367650712015998999998515556663135899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 RVCk~D~~wtSy~ka~L~Cs~p~~~p~~~~~~~~fN~lQ~~~v~~pg~~La~~l~~~~~~~vlygvFsts~~~~~~~~~~ 320 (476)
T d1shyb1 241 RFCSINSGLHSYMEMPLECILTELVPRGSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSKPDSAEPMDR 320 (476)
T ss_dssp EEECCTTCCCSCEEEEEEEECC---------CCBCCCCCEEEEECCCHHHHHHHTCCTTCCEEEEEEEEECTTSSSEEEE
T ss_pred EEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 97226898633899878874477656667777343215678741764123442177888988999972786788887887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 SAVC~fsl~dI~~~F~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~pl~~~~~~~~~~ 400 (476)
T d1shyb1 321 SAMCAFPIKYVNDFFNKIVNKNNVRCLQHFYGPNHEHCFNRTLLRNSSGCEARRDEYRTEFTTALQRVDLFMGQFSEVLL 400 (476)
T ss_dssp EEEEEEEHHHHHHHHHCC----CBCCCTTTSCSSSTTTTCC-------------CCCCEEBSSCEEEECSSTTTTTTSCE
T ss_pred CEEEEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEE
T ss_conf 67999789999999863321146677762507998767688867788776442477765425840675540112687038
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 Tsi~v~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~Lyv~t~~~V~kvPv 476 (476)
T d1shyb1 401 TSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLLDSHPVSPEVIVEHTLNQNGYTLVITGKKITKIPL 476 (476)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEEECCSSSCCCCSCCEECCSSCEEEEEEEEEETTTEEEEEEEETTEEEEEES
T ss_pred EEEEEEECCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEC
T ss_conf 9999960398489999889967999998489872468999977876470010244346798899997998998109
|
| >d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Glutamyl-tRNA(Gln) amidotransferase subunit A species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=35929.98 Aligned_cols=1 Identities=0% Similarity=-0.594 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~~~~gpL~GvPi~vKD~~~~~g~~tt~Gs 80 (475)
T d2gi3a1 1 MIDLDFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKGKFWGIPVAIKDNILTLGMRTTCAS 80 (475)
T ss_dssp CSCSCGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCSTTTTCEEEEETTBCCSSSCCCTTC
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 98877478699999982778899999999999998798689899929877500048878897888835377797548658
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~da~~v~~L~~aGaii~Gktn~~e~~~~~~~~~~~~G~t~nP~~~~~~~GGSSgGsaaavAag~~~~a~Gt 160 (475)
T d2gi3a1 81 RILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGS 160 (475)
T ss_dssp GGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEE
T ss_pred HHHCCCCCCCCCCEEEEHHHCCCCCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEC
T ss_conf 64557999987402555020477412353200002565556500002333222222457654541344553376257544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 D~gGSiR~PA~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~d~~d~~s~~~~~~~~~~~~~ 240 (475)
T d2gi3a1 161 DTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEE 240 (475)
T ss_dssp ESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTS
T ss_pred CCCCCCHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 88860214469749545658998778999987788889427732889999998642101364433334546652010035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~ri~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~V~ev~~p~~~~~~~~~~~i~~~e~~~~l~~~~~~~~~~~~~ 320 (475)
T d2gi3a1 241 GVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIK 320 (475)
T ss_dssp CCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHTC--------------
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 65566222210345577899999999999999998899999927986677899999999999998798753310111013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~ 400 (475)
T d2gi3a1 321 EKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIK 400 (475)
T ss_dssp ----------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCC
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
T ss_conf 44489999863101238899999984201104578999998777777777778999865899998189888777766656
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~~~~~~~t~~~Nl~G~PaisvP~G~s~GlPvGvQlig~~~~D~~LL~~A~~~E~~~~~~~~~~~p~P~l~~ 475 (475)
T d2gi3a1 401 DPLTYYLMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNSPYNENGMFPLPEVKA 475 (475)
T ss_dssp CHHHHHTTTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHHCTTSBTTBCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 658776666898999997898499968779998775888899999999999999999708977579998989798
|
| >d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Glutamyl-tRNA(Gln) amidotransferase subunit A species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=35926.68 Aligned_cols=1 Identities=100% Similarity=0.004 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~~~~gpL~GvPi~vKD~~~~~g~~tt~Gs 80 (475)
T d2gi3a1 1 MIDLDFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKGKFWGIPVAIKDNILTLGMRTTCAS 80 (475)
T ss_dssp CSCSCGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCSTTTTCEEEEETTBCCSSSCCCTTC
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 98877478699999982778899999999999998798689899929877500048878897888835377797548658
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~da~~v~~L~~aGaii~Gktn~~e~~~~~~~~~~~~G~t~nP~~~~~~~GGSSgGsaaavAag~~~~a~Gt 160 (475)
T d2gi3a1 81 RILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGS 160 (475)
T ss_dssp GGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEE
T ss_pred HHHCCCCCCCCCCEEEEHHHCCCCCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEC
T ss_conf 64557999987402555020477412353200002565556500002333222222457654541344553376257544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 D~gGSiR~PA~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~d~~d~~s~~~~~~~~~~~~~ 240 (475)
T d2gi3a1 161 DTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEE 240 (475)
T ss_dssp ESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTS
T ss_pred CCCCCCHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 88860214469749545658998778999987788889427732889999998642101364433334546652010035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~ri~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~V~ev~~p~~~~~~~~~~~i~~~e~~~~l~~~~~~~~~~~~~ 320 (475)
T d2gi3a1 241 GVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIK 320 (475)
T ss_dssp CCTTCEEEEEGGGGGSCCCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGGHHHHHHHHHHHHHHTC--------------
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 65566222210345577899999999999999998899999927986677899999999999998798753310111013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~ 400 (475)
T d2gi3a1 321 EKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIK 400 (475)
T ss_dssp ----------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSCCCBTTTCC
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
T ss_conf 44489999863101238899999984201104578999998777777777778999865899998189888777766656
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~~~~~~~~t~~~Nl~G~PaisvP~G~s~GlPvGvQlig~~~~D~~LL~~A~~~E~~~~~~~~~~~p~P~l~~ 475 (475)
T d2gi3a1 401 DPLTYYLMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNSPYNENGMFPLPEVKA 475 (475)
T ss_dssp CHHHHHTTTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHHCTTSBTTBCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 658776666898999997898499968779998775888899999999999999999708977579998989798
|
| >d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Fungus (Penicillium citrinum) [TaxId: 5077]
Probab=100.00 E-value=0 Score=35925.98 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~r~~~Vk~~F~~aw~~Y~~~A~g~Del~P~s~~~~d~~~g~~~TlvDsLdTL~imgl~~e~~~a~~~v~~~~~~~~~ 80 (475)
T d2ri9a1 1 SNQAKADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKADVVNAILEHVADIDFSKTS 80 (475)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTSSEEETTTTEEECTTTTSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCTTCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 95899999999999999999986788440147879988988870448999889999848979999999999860056777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~v~vFEt~IR~LGGLLSay~ls~~~~~~~~~~~~~~~~lL~kA~dLadrLl~AF~t~tg~P~~~vnl~~~~~~~~~~~~ 160 (475)
T d2ri9a1 81 DTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNINITSHGNDGATTNG 160 (475)
T ss_dssp SCEEHHHHHHHHHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEECTTTCCBCCCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 73102332179888999999970686434433024579999999999997400457998860565221347888886531
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 la~~gsl~LEf~~Ls~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~iGa~~DSyYEYLlK 240 (475)
T d2ri9a1 161 LAVTGTLVLEWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIK 240 (475)
T ss_dssp HHHHHSCHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCSSGGGCSBTTBCCSEEETTTCCBCCCCBCSSTTTHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 20103313259999999788717999999999998631012688887433156588886037634338764078999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~il~~~~~~~~~~~~~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hL~cF~~G~l~Lg~~~~~~~~~~~~a~ 320 (475)
T d2ri9a1 241 MYVYDPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSSQHLTCFDGGSFLLGGTVLDRQDFIDFGL 320 (475)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHHHHTEECCSSCTTCCEECEEETTEEECEEETGGGGHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCHHHHHCCCCCCCHHHHHHHH
T ss_conf 98616752157899999999999998612899888847886216886665644031303455661663436277999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~l~~~c~~~y~~~~tgl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iESlfylyR~TgD~~yre~gw~if~ 400 (475)
T d2ri9a1 321 ELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFV 400 (475)
T ss_dssp HHHHHHHHHHHTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBCSCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999606533874340344467875133335676253466556875689999999998289889999999999
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ai~~~~rt~~G~a~i~dV~~~~~~~~~D~meSFflaETLKYLYLLF~d~~~~~l~~~~~d~~VFnTEaHPl~v~~ 475 (475)
T d2ri9a1 401 AINSTCRTDSGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTEAHPISVAR 475 (475)
T ss_dssp HHHHHTBCSSSBCCBSCTTSGGGSSBBSCCCTHHHHTHHHHHHHTTSCCCTTSCCSTTCCSEEECTTSCEEECCC
T ss_pred HHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 999971068676312000578999858866651998999999973689644563437789879746887655889
|
| >d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Fungus (Penicillium citrinum) [TaxId: 5077]
Probab=100.00 E-value=0 Score=35923.67 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~r~~~Vk~~F~~aw~~Y~~~A~g~Del~P~s~~~~d~~~g~~~TlvDsLdTL~imgl~~e~~~a~~~v~~~~~~~~~ 80 (475)
T d2ri9a1 1 SNQAKADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKADVVNAILEHVADIDFSKTS 80 (475)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTSSEEETTTTEEECTTTTSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCTTCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 95899999999999999999986788440147879988988870448999889999848979999999999860056777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~v~vFEt~IR~LGGLLSay~ls~~~~~~~~~~~~~~~~lL~kA~dLadrLl~AF~t~tg~P~~~vnl~~~~~~~~~~~~ 160 (475)
T d2ri9a1 81 DTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQSRNLADVLKFAFDTPSGVPYNNINITSHGNDGATTNG 160 (475)
T ss_dssp SCEEHHHHHHHHHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHHHHGGGGCSSSSCCCSEECTTTCCBCCCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 73102332179888999999970686434433024579999999999997400457998860565221347888886531
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 la~~gsl~LEf~~Ls~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~~GL~p~~i~~~tg~~~~~~~~iGa~~DSyYEYLlK 240 (475)
T d2ri9a1 161 LAVTGTLVLEWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLIK 240 (475)
T ss_dssp HHHHHSCHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCSSGGGCSBTTBCCSEEETTTCCBCCCCBCSSTTTHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 20103313259999999788717999999999998631012688887433156588886037634338764078999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~il~~~~~~~~~~~~~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hL~cF~~G~l~Lg~~~~~~~~~~~~a~ 320 (475)
T d2ri9a1 241 MYVYDPKRFETYKDRWVLAAESTIKHLKSHPKSRPDLTFLSSYSNRNYDLSSQHLTCFDGGSFLLGGTVLDRQDFIDFGL 320 (475)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHHHHHHTEECCSSCTTCCEECEEETTEEECEEETGGGGHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHCCHHHHHCCCCCCCHHHHHHHH
T ss_conf 98616752157899999999999998612899888847886216886665644031303455661663436277999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~l~~~c~~~y~~~~tgl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iESlfylyR~TgD~~yre~gw~if~ 400 (475)
T d2ri9a1 321 ELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFV 400 (475)
T ss_dssp HHHHHHHHHHHTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBCSCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999606533874340344467875133335676253466556875689999999998289889999999999
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ai~~~~rt~~G~a~i~dV~~~~~~~~~D~meSFflaETLKYLYLLF~d~~~~~l~~~~~d~~VFnTEaHPl~v~~ 475 (475)
T d2ri9a1 401 AINSTCRTDSGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTEAHPISVAR 475 (475)
T ss_dssp HHHHHTBCSSSBCCBSCTTSGGGSSBBSCCCTHHHHTHHHHHHHTTSCCCTTSCCSTTCCSEEECTTSCEEECCC
T ss_pred HHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 999971068676312000578999858866651998999999973689644563437789879746887655889
|
| >d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leishmanolysin
domain: Leishmanolysin
species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=0 Score=35920.72 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~W~pIRI~~~~~~l~~~~~~C~~~Gq~i~~~~g~~~~C~~~Dilt~~k~~~l~~~~~~~~~~~~~~~L~V~p~~~ 80 (475)
T d1lmla_ 1 VVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQVQG 80 (475)
T ss_dssp CEECSSCEECCEEEECHHHHSTTSSCCSTTCEEECSSSCEEECCGGGCCCHHHHHHHHHTHHHHHHHHHHTTEEECCEES
T ss_pred CCCCCCCCCEEEEEEHHHHCCCCCCEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 96678830269999868846986650168869772699737873001659999999999999999999998710651789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~i~~~~~~~~~c~~~~ip~~~~~~gv~n~Dl~i~v~~~~~~~~~~a~a~~c~~~~~~RPi~G~i~~n~~~i~~~~~~~~~ 160 (475)
T d1lmla_ 81 KWKVTDMVGDICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRYDQLVT 160 (475)
T ss_dssp EECCCCCCSTTGGGSCCCHHHHHTCEESCSEEEEEECCCCSTTCCCEEEEEEECTTSCEEEEEEECCGGGCCCSCCHHHH
T ss_pred CEEECCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCEEECCHHHCCCCCHHHHH
T ss_conf 74753666676666226734236785674679999701699871689876031567786101254167566873005889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~HEi~H~LGfs~~~~~~~~~~~~~~~~~~~~~~~~~l~tp~~~~~a~~hfgc~~~~GielE~~gg~gt~~sHwe~r~ 240 (475)
T d1lmla_ 161 RVVTHEMAHALGFSGPFFEDARIVANVPNVRGKNFDVPVINSSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHIKMRN 240 (475)
T ss_dssp HHHHHHHHHHTTCSHHHHHHTTCEEEESCGGGCSSCEEEECCHHHHHHHHHHHTCTTCCCEEBCCSSCTTTTTSSBCTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 99999998874358335410465556654333420269962617867767612667766413422888887654066666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~elMt~~~~~~~~S~~TlA~l~DtG~Y~vn~~~a~p~~wG~~~gc~f~~~~c~~~~~~~~p~~fc~~~~~~~~C~~d~ 320 (475)
T d1lmla_ 241 AQDELMAPAAAAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSVTQWPAMFCNESEDAIRCPTSR 320 (475)
T ss_dssp CTTBTTSSSCSSCBCCHHHHHHHHHTTSCEECGGGCCCCCTTTTCCHHHHHSCSEETTEESCTTTCCC----CBBCCTTC
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54555236546761109999999874881762243666600055587312140557874559732137998665447888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~g~C~~~~~~~~p~~~q~f~~~~~~g~~~~~DyCp~~~~~~~~~C~~~~~~~~~~~~~~~~~g~~S~Cf~s~~~~~~~ 400 (475)
T d1lmla_ 321 LSLGACGVTRHPGLPPYWQYFTDPSLAGVSAFMDYCPVVVPYSDGSCTQRASEAHASLLPFNVFSDAARCIDGAFRPKAT 400 (475)
T ss_dssp SEEEEECCEECSCCCGGGCCSSSTTEECSCTTTTTCCCEEEEEEEETTSCGGGSCTTTGGGCCCSTTEEEEEEEECBCC-
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCCCCC
T ss_conf 86796787334789831215678566787325405833653168753465555432212566147987815775565666
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~~~~~~C~~~~C~~~~~~~~I~i~g~~~~~~C~~g~~i~~~~~~~~~~~~G~I~CP~~~~fC~~~~~~~~~ 475 (475)
T d1lmla_ 401 DGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLRVELSTVSNAFEGGGYITCPPYVEVCQGNVQAAKD 475 (475)
T ss_dssp -----CEEEEEEEEEEETTTTEEEEECTTCSSCEECCTTCEEEGGGTCSSBCTTCEEECCCHHHHHTTCHHHHTC
T ss_pred CCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCEEECCCHHHHHHHHHCCCCC
T ss_conf 785565288888489989997899999468559989999889851135654157289897869987565455899
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=0 Score=35920.01 Aligned_cols=1 Identities=100% Similarity=1.368 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
|
T Consensus 1 ~~~~~~~~~~~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~kLdyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~ 80 (475)
T d1bf2a3 1 PSTQSTGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSD 80 (475)
T ss_dssp CCCCCCCCCCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCC
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99898999989887551899988247336799988666678999985159999749998994997718776666665556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
T d1bf2a3 81 ANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDN 160 (475)
T ss_dssp TTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67688998846677867653568777999999999999998557689997023422377764234787676422367644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
T d1bf2a3 161 ATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYN 240 (475)
T ss_dssp HHHBCBCTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCCSSSSCCTTSTTCTTCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCHHHHCCCHHCCCCCCCCCCCC
T ss_conf 54334688862111577765751010168888889998732221487547872175412233202100057657665210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (475)
T d1bf2a3 241 FDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDA 320 (475)
T ss_dssp BCTTCTTSHHHHHHHHSCBCCTTCCSSBEEEECCCCSSTTCCCTTCSCTTCEEECHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 44442004430466665432102566633002511136652114677510677522468999998415663015676655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~hd~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (475)
T d1bf2a3 321 NDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAVDQRRAA 400 (475)
T ss_dssp HHHTTCHHHHGGGTCCGGGEEECSCCSSSCCHHHHTTCSSCCCCCCTTSCCCCCCCSCCCCCCTTTTTTSCCHHHHHHHH
T ss_pred HHCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 54035323320157677777767775022268887651002157651333557776556543347667752058999999
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------------------------~ 1683 (1815)
=
T Consensus 401 r~~~~~llt~pGiP~iyyGdE~g~~~~g~~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~Li~lR~~~paLr~~~~ 475 (475)
T d1bf2a3 401 RTGMAFEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSSW 475 (475)
T ss_dssp HHHHHHHHHSSSEEEEETTGGGTCCCTTCSCCTTCCSTTTSCCCCCCHHHHHHHHHHHHHHHHHHHCGGGSCSSC
T ss_pred HHHHHHHHHHCCCHHEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCC
T ss_conf 999999998256330141775484678976654589866755887550347999999999999853853278989
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=100.00 E-value=0 Score=35918.55 Aligned_cols=1 Identities=100% Similarity=1.334 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~~~~~~~~~~~~~~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~kLdyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~ 80 (475)
T d1bf2a3 1 PSTQSTGTKPTRAQKDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSD 80 (475)
T ss_dssp CCCCCCCCCCCCCGGGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCC
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99898999989887551899988247336799988666678999985159999749998994997718776666665556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (475)
T d1bf2a3 81 ANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDN 160 (475)
T ss_dssp TTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67688998846677867653568777999999999999998557689997023422377764234787676422367644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (475)
T d1bf2a3 161 ATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDSLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYN 240 (475)
T ss_dssp HHHBCBCTTSSSBCCSSSSSCCBCTTSHHHHHHHHHHHHHHHHTSCCCEEEETTGGGGGBCCSSSSCCTTSTTCTTCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCHHHHCCCHHCCCCCCCCCCCC
T ss_conf 54334688862111577765751010168888889998732221487547872175412233202100057657665210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (475)
T d1bf2a3 241 FDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDA 320 (475)
T ss_dssp BCTTCTTSHHHHHHHHSCBCCTTCCSSBEEEECCCCSSTTCCCTTCSCTTCEEECHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 44442004430466665432102566633002511136652114677510677522468999998415663015676655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~hd~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (475)
T d1bf2a3 321 NDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDGGTSTNYSWDQGMSAGTGAAVDQRRAA 400 (475)
T ss_dssp HHHTTCHHHHGGGTCCGGGEEECSCCSSSCCHHHHTTCSSCCCCCCTTSCCCCCCCSCCCCCCTTTTTTSCCHHHHHHHH
T ss_pred HHCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 54035323320157677777767775022268887651002157651333557776556543347667752058999999
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 r~~~~~llt~pGiP~iyyGdE~g~~~~g~~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~Li~lR~~~paLr~~~~ 475 (475)
T d1bf2a3 401 RTGMAFEMLSAGTPLMQGGDEYLRTLQCNNNAYNLDSSANWLTYSWTTDQSNFYTFAQRLIAFRKAHPALRPSSW 475 (475)
T ss_dssp HHHHHHHHHSSSEEEEETTGGGTCCCTTCSCCTTCCSTTTSCCCCCCHHHHHHHHHHHHHHHHHHHCGGGSCSSC
T ss_pred HHHHHHHHHHCCCHHEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCC
T ss_conf 999999998256330141775484678976654589866755887550347999999999999853853278989
|
| >d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leishmanolysin
domain: Leishmanolysin
species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=0 Score=35917.43 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~W~pIRI~~~~~~l~~~~~~C~~~Gq~i~~~~g~~~~C~~~Dilt~~k~~~l~~~~~~~~~~~~~~~L~V~p~~~ 80 (475)
T d1lmla_ 1 VVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQVQG 80 (475)
T ss_dssp CEECSSCEECCEEEECHHHHSTTSSCCSTTCEEECSSSCEEECCGGGCCCHHHHHHHHHTHHHHHHHHHHTTEEECCEES
T ss_pred CCCCCCCCCEEEEEEHHHHCCCCCCEEECCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 96678830269999868846986650168869772699737873001659999999999999999999998710651789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~i~~~~~~~~~c~~~~ip~~~~~~gv~n~Dl~i~v~~~~~~~~~~a~a~~c~~~~~~RPi~G~i~~n~~~i~~~~~~~~~ 160 (475)
T d1lmla_ 81 KWKVTDMVGDICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAVGVINIPAANIASRYDQLVT 160 (475)
T ss_dssp EECCCCCCSTTGGGSCCCHHHHHTCEESCSEEEEEECCCCSTTCCCEEEEEEECTTSCEEEEEEECCGGGCCCSCCHHHH
T ss_pred CEEECCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCEEECCHHHCCCCCHHHHH
T ss_conf 74753666676666226734236785674679999701699871689876031567786101254167566873005889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~HEi~H~LGfs~~~~~~~~~~~~~~~~~~~~~~~~~l~tp~~~~~a~~hfgc~~~~GielE~~gg~gt~~sHwe~r~ 240 (475)
T d1lmla_ 161 RVVTHEMAHALGFSGPFFEDARIVANVPNVRGKNFDVPVINSSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHIKMRN 240 (475)
T ss_dssp HHHHHHHHHHTTCSHHHHHHTTCEEEESCGGGCSSCEEEECCHHHHHHHHHHHTCTTCCCEEBCCSSCTTTTTSSBCTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 99999998874358335410465556654333420269962617867767612667766413422888887654066666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~elMt~~~~~~~~S~~TlA~l~DtG~Y~vn~~~a~p~~wG~~~gc~f~~~~c~~~~~~~~p~~fc~~~~~~~~C~~d~ 320 (475)
T d1lmla_ 241 AQDELMAPAAAAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSVTQWPAMFCNESEDAIRCPTSR 320 (475)
T ss_dssp CTTBTTSSSCSSCBCCHHHHHHHHHTTSCEECGGGCCCCCTTTTCCHHHHHSCSEETTEESCTTTCCC----CBBCCTTC
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54555236546761109999999874881762243666600055587312140557874559732137998665447888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~g~C~~~~~~~~p~~~q~f~~~~~~g~~~~~DyCp~~~~~~~~~C~~~~~~~~~~~~~~~~~g~~S~Cf~s~~~~~~~ 400 (475)
T d1lmla_ 321 LSLGACGVTRHPGLPPYWQYFTDPSLAGVSAFMDYCPVVVPYSDGSCTQRASEAHASLLPFNVFSDAARCIDGAFRPKAT 400 (475)
T ss_dssp SEEEEECCEECSCCCGGGCCSSSTTEECSCTTTTTCCCEEEEEEEETTSCGGGSCTTTGGGCCCSTTEEEEEEEECBCC-
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCCCCC
T ss_conf 86796787334789831215678566787325405833653168753465555432212566147987815775565666
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~~~~~~~~C~~~~C~~~~~~~~I~i~g~~~~~~C~~g~~i~~~~~~~~~~~~G~I~CP~~~~fC~~~~~~~~~ 475 (475)
T d1lmla_ 401 DGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLRVELSTVSNAFEGGGYITCPPYVEVCQGNVQAAKD 475 (475)
T ss_dssp -----CEEEEEEEEEEETTTTEEEEECTTCSSCEECCTTCEEEGGGTCSSBCTTCEEECCCHHHHHTTCHHHHTC
T ss_pred CCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCEEECCCHHHHHHHHHCCCCC
T ss_conf 785565288888489989997899999468559989999889851135654157289897869987565455899
|
| >d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=0 Score=35856.03 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~~~~f~reripeR~vHAKG~ga~G~F~~t~d~s~~t~a~~f~~~G 80 (474)
T d1si8a_ 1 QHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEVG 80 (474)
T ss_dssp CBCBCTTSCBCSCSSSCEEESTTSCBBTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 97507899775798755105899972467789999987505555755345477054699999898624542137635589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 k~tPV~vRFSt~~G~~~s~D~~rd~RG~AlKf~~~eG~~DlV~nn~PvFfird~~~F~~fi~a~k~~P~t~~~d~~~~~~ 160 (474)
T d1si8a_ 81 KETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEGNYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWD 160 (474)
T ss_dssp CEEEEEEEEECSSCCTTCCSSSSSCCEEEEEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSBCTTTCSBCHHHHHH
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 66679995326889899987666676058999768885005651677301599999998987515787767887678999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 f~~~~Pes~~~~~~l~s~r~~P~sy~~~~~~g~htf~~vn~~G~~~~vK~~~~P~~Gv~~l~~~ea~~l~g~dpD~l~~d 240 (474)
T d1si8a_ 161 FWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFHIED 240 (474)
T ss_dssp HHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHH
T ss_pred HHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 98619778999999843578888657776544102787805797899999888289867789999998646797477887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 L~~~i~~g~~~~w~l~vQl~~~~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~LtL~~~~~n~~~e~eq~~F~P~~l~~GI~ 320 (474)
T d1si8a_ 241 LHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIE 320 (474)
T ss_dssp HHHHHHTTCCCEEEEEEEEEEHHHHTTCHHHHTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEE
T ss_pred HHHHHHCCCCCCEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 99999769998348999843754541489888888623675578358834574146886631221212156534778715
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~S~Dp~Lq~R~~aY~ds~~~Rlg~n~~qlPvN~p~~~~~n~~rdG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~ 400 (474)
T d1si8a_ 321 ASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAPVNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEV 400 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCTTGGGSGGGCCSSCCCCSCCCCTTCSCCCSCSCCCSSCSCTTSCBCCGGGCCCCCBC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 79994010012566888761578773016655888855475657875545788877867766788865688768887055
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~g~~~~~~~~~d~~~Q~~~~~~~~~~~e~~~li~n~~~~l~~~~~~~i~~r~~~~~~~vd~~~g~~va~~l~~~ 474 (474)
T d1si8a_ 401 EGNVGNYSYNQDHFTQANALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAIKQQ 474 (474)
T ss_dssp CSBEEECCCCCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 10473157787745163799884899999999999999973899889999999999987999999999997049
|
| >d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Putative betaine aldehyde dehydrogenase YdcW species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35855.16 Aligned_cols=1 Identities=0% Similarity=-0.894 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 m~~~l~I~G~~v~~~g~~~~v~nP~tg~~i~~v~~a~~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~e 80 (474)
T d1wnda_ 1 MQHKLLINGELVSGEGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQV 80 (474)
T ss_dssp CCCCEEETTEEECCCSCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCEECCEEECCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHH
T ss_conf 99764789857089898566478999998799959999999999999999999882199999999999999999868999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 la~~~~~e~Gk~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~a 160 (474)
T d1wnda_ 81 FAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLA 160 (474)
T ss_dssp HHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTCCEEECBEEEETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHCCHH
T ss_conf 99999997399856764112233322232222333322221211236786349998335414788520407666441089
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~ALaaGN~Vv~Kps~~~p~~~~~~~~l~~~~lP~gv~~~v~g~~~~~g~~L~~~p~i~~v~fTGS~~~G~~i~~~a~~~~ 240 (474)
T d1wnda_ 161 PALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSI 240 (474)
T ss_dssp HHHHTTCEEEEECCTTCCHHHHHHHHHHTTTSCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHHHGGGT
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCC
T ss_conf 99971997899578758689999999999748988089986794899999971989688991698899999998655278
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 k~~~lElgG~~p~iV~~dad~~~a~~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~~~~~l~~~~~~l~~G~~~~~~~~~G 320 (474)
T d1wnda_ 241 KRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELG 320 (474)
T ss_dssp CEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHHTCCBCCTTSTTCCBC
T ss_pred CEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf 75999758878169817646643334554311457886542323343444400011124578898502687678776034
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 pli~~~~~~~~~~~i~~a~~~ga~~v~~G~~~~~~~g~~~~Ptil~~~~~~~~~~~eE~FGPVl~v~~~~~~deai~~an 400 (474)
T d1wnda_ 321 PLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWAN 400 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCEEECCCCCEEEEEEECCHHHHHHHHH
T ss_conf 44112222007899999997799099747854688951882057522456666004315577699999599999999996
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~~~GL~a~i~t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~gl~~~t~~k~v~i~~ 474 (474)
T d1wnda_ 401 DSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHVMVKH 474 (474)
T ss_dssp SSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCCTTSCBCCSGGGEECCBSHHHHHHTTEEEEEEEEEC
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEC
T ss_conf 79999869999089999999998488437999099885688772662406448557799999708778999959
|
| >d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=35854.91 Aligned_cols=1 Identities=0% Similarity=0.071 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~k~~~n~I~G~~~~~~~~~~v~~P~tg~~i~~~~~a~~~dv~~Ai~~A~~A~~~W~~~s~~~R~~iL~~~a~~L~~~~~~ 80 (474)
T d1euha_ 1 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEK 80 (474)
T ss_dssp CCBCCEEETTEEECCSSEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCEECCEECCCCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96465366683428999779768999888899949899999999999999759873099999999999999999974999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 la~~~~~e~Gk~~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~I~p~n~P~~~~~ 160 (474)
T d1euha_ 81 IGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAG 160 (474)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHH
T ss_pred HHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECEEEEEEECCCCCCCHHHH
T ss_conf 99999997689830001332013788999988876532000122111234578506998503569998656343103443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~aL~aGN~vV~Kps~~~~~~~~~l~~~~~eaglP~gv~~~i~g~~~~~~~~L~~~~~v~~v~ftGs~~~~~~i~~~ 240 (474)
T d1euha_ 161 SKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKM 240 (474)
T ss_dssp HHHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHHHTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHH
T ss_conf 10000332354302113566638999999999984879674997468848999999849882479833764444224444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 a~~k~~~~e~gG~~~~iV~~dAdl~~aa~~i~~~~~~~~Gq~C~a~~~i~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 320 (474)
T d1euha_ 241 AGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDAD 320 (474)
T ss_dssp TTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHHHHHHHHHHHHHHTSCBSCGGGTCS
T ss_pred CCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 13656888527744599989986366899999998617897556664102034445566676666653012347522234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~fgPvl~v~~~~~~deai~~~n~~ 400 (474)
T d1euha_ 321 ITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKS 400 (474)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCEEEEEEECCHHHHHHHHHCC
T ss_conf 46431057898877777764213000124678788876898996589866323113678678999969999999999779
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~glta~v~s~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~ 474 (474)
T d1euha_ 401 EYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 474 (474)
T ss_dssp SEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCCSTTSCBCCEETTEESCBSHHHHHHHTEEEEEEEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEECC
T ss_conf 99986999918999999999858788999979978788898846405471576578999997286789999569
|
| >d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Putative betaine aldehyde dehydrogenase YdcW species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35854.29 Aligned_cols=1 Identities=0% Similarity=-1.059 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~l~I~G~~v~~~g~~~~v~nP~tg~~i~~v~~a~~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~e 80 (474)
T d1wnda_ 1 MQHKLLINGELVSGEGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQV 80 (474)
T ss_dssp CCCCEEETTEEECCCSCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCEECCEEECCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHH
T ss_conf 99764789857089898566478999998799959999999999999999999882199999999999999999868999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 la~~~~~e~Gk~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~a 160 (474)
T d1wnda_ 81 FAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLA 160 (474)
T ss_dssp HHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHHHTTCCEEECBEEEETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHCCHH
T ss_conf 99999997399856764112233322232222333322221211236786349998335414788520407666441089
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~ALaaGN~Vv~Kps~~~p~~~~~~~~l~~~~lP~gv~~~v~g~~~~~g~~L~~~p~i~~v~fTGS~~~G~~i~~~a~~~~ 240 (474)
T d1wnda_ 161 PALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTASSI 240 (474)
T ss_dssp HHHHTTCEEEEECCTTCCHHHHHHHHHHTTTSCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHHHGGGT
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCC
T ss_conf 99971997899578758689999999999748988089986794899999971989688991698899999998655278
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 k~~~lElgG~~p~iV~~dad~~~a~~~i~~~~~~~~GQ~C~a~~rv~V~~~i~d~~~~~l~~~~~~l~~G~~~~~~~~~G 320 (474)
T d1wnda_ 241 KRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELG 320 (474)
T ss_dssp CEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHHTCCBCCTTSTTCCBC
T ss_pred CEEEEECCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf 75999758878169817646643334554311457886542323343444400011124578898502687678776034
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 pli~~~~~~~~~~~i~~a~~~ga~~v~~G~~~~~~~g~~~~Ptil~~~~~~~~~~~eE~FGPVl~v~~~~~~deai~~an 400 (474)
T d1wnda_ 321 PLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWAN 400 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCEEECCCCCEEEEEEECCHHHHHHHHH
T ss_conf 44112222007899999997799099747854688951882057522456666004315577699999599999999996
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~~~GL~a~i~t~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~PfGG~k~SG~G~~~g~~gl~~~t~~k~v~i~~ 474 (474)
T d1wnda_ 401 DSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSLYGLEDYTVVRHVMVKH 474 (474)
T ss_dssp SSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCCTTSCBCCSGGGEECCBSHHHHHHTTEEEEEEEEEC
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEC
T ss_conf 79999869999089999999998488437999099885688772662406448557799999708778999959
|
| >d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Heme-dependent catalases domain: Catalase I species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=0 Score=35854.02 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~t~~~g~p~~~~~~s~~~g~~gp~ll~d~~l~e~~~~f~reripeR~vHAKG~ga~G~F~~t~d~s~~t~a~~f~~~G 80 (474)
T d1si8a_ 1 QHLTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEVG 80 (474)
T ss_dssp CBCBCTTSCBCSCSSSCEEESTTSCBBTTCHHHHHHHHHHHTCCCCCCSSCCSEEEEEEEEEESSCCTTTCCCGGGSSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 97507899775798755105899972467789999987505555755345477054699999898624542137635589
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 k~tPV~vRFSt~~G~~~s~D~~rd~RG~AlKf~~~eG~~DlV~nn~PvFfird~~~F~~fi~a~k~~P~t~~~d~~~~~~ 160 (474)
T d1si8a_ 81 KETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEGNYDLVGNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWD 160 (474)
T ss_dssp CEEEEEEEEECSSCCTTCCSSSSSCCEEEEEEEETTEEEEEEEESSSSCSCSCGGGHHHHHHHHSBCTTTCSBCHHHHHH
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 66679995326889899987666676058999768885005651677301599999998987515787767887678999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 f~~~~Pes~~~~~~l~s~r~~P~sy~~~~~~g~htf~~vn~~G~~~~vK~~~~P~~Gv~~l~~~ea~~l~g~dpD~l~~d 240 (474)
T d1si8a_ 161 FWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFHIED 240 (474)
T ss_dssp HHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTCCEEEEEEEEEETTCCCBCCHHHHHHHHHHCTTHHHHH
T ss_pred HHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 98619778999999843578888657776544102787805797899999888289867789999998646797477887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 L~~~i~~g~~~~w~l~vQl~~~~d~~~~~~~~~D~Tk~Wpe~~~P~i~VG~LtL~~~~~n~~~e~eq~~F~P~~l~~GI~ 320 (474)
T d1si8a_ 241 LHNAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYFAEVEQVTFSPGNFVPGIE 320 (474)
T ss_dssp HHHHHHTTCCCEEEEEEEEEEHHHHTTCHHHHTCTTCCCCTTTSCCEEEEEEEEEECCSCHHHHTTTCCCCTTCCCTTEE
T ss_pred HHHHHHCCCCCCEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 99999769998348999843754541489888888623675578358834574146886631221212156534778715
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~S~Dp~Lq~R~~aY~ds~~~Rlg~n~~qlPvN~p~~~~~n~~rdG~m~~~~~~~~~nY~Pns~~~~~~~~~~~~~~~~~~ 400 (474)
T d1si8a_ 321 ASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAPVNNYQKDGNMRFNNGNSEINYEPNSYTETPKEDPTAKISSFEV 400 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCTTGGGSGGGCCSSCCCCSCCCCTTCSCCCSCSCCCSSCSCTTSCBCCGGGCCCCCBC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 79994010012566888761578773016655888855475657875545788877867766788865688768887055
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~g~~~~~~~~~d~~~Q~~~~~~~~~~~e~~~li~n~~~~l~~~~~~~i~~r~~~~~~~vd~~~g~~va~~l~~~ 474 (474)
T d1si8a_ 401 EGNVGNYSYNQDHFTQANALYNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAIKQQ 474 (474)
T ss_dssp CSBEEECCCCCCCSHHHHHHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 10473157787745163799884899999999999999973899889999999999987999999999997049
|
| >d1musa_ c.55.3.4 (A:) Transposase inhibitor (Tn5 transposase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Transposase inhibitor (Tn5 transposase) domain: Transposase inhibitor (Tn5 transposase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35853.96 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~~~w~~~ef~~~~lgD~Rl~~Rl~~l~~~l~~~~~~sip~~~~~~~a~~~aaYRF~~N~~v~~~~I~~~~~~~t~ 80 (474)
T d1musa_ 1 SALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTV 80 (474)
T ss_dssp CCCSSHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHTTTSCHHHHTTTCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 95332767999986126768747887999999999747699724032289799999999870899999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~r~~~~~~vL~i~DTT~l~~~~~~~~~lG~~~~~~~~~~G~~lHs~l~v~~~~~~PLGl~~~~~w~R~~~~~~~e~KeS~ 160 (474)
T d1musa_ 81 KLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQKASRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESG 160 (474)
T ss_dssp HHHTTCSCEEEEEEEEEEEECSGGGGGSBCSSSTTCSCEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSGGGCSSCGGG
T ss_pred HHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCHHHCHHH
T ss_conf 98525880899916970014887610026656677657648998558986766870047885612444456873435026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 rW~ea~~~~~e~l~~~~~~vV~V~DRe~Diyelf~~~~~~g~~flVR~~~nR~~~~~~~~l~~~~~~~~~~g~~~v~l~~ 240 (474)
T d1musa_ 161 KWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQ 240 (474)
T ss_dssp HHHHHHHHHHHHHGGGGGGEEEEECGGGCCHHHHHHHHHTTCEEEEECCSCCBCTTTCSBHHHHHHTSCCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECC
T ss_conf 67888999998716766527999605466699999887449828985154440246788677887336546418998504
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~r~aR~a~l~vr~~~v~l~~~~~~l~~v~~~e~~~p~g~~~~~W~LLTnl~v~~~~~A~eiv~~Y~~RW 320 (474)
T d1musa_ 241 KGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRW 320 (474)
T ss_dssp EEEECSSCCEEEECCEEEEEEEEEEEEEETGGGEEEEEEEEEEESCCSSSCCCEEEEEESSCCSSHHHHHHHHHHHHTTH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 66544333456633337898622304786178633688999971698887752307997055686162999999984796
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~IE~~fk~lKsg~~~E~~~l~~~~~l~~~~~~~~~ia~r~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~e~~ 400 (474)
T d1musa_ 321 RIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPPQALRAQGLLKEAEHVESQSAETVLTPDECQ 400 (474)
T ss_dssp HHHHHHHHHHTTTCGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------CCBGGGTSCHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCCHHHHH
T ss_conf 48997500356663203303688999999999999999999999850352233212344443026887866728999999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~l~~~~~~~~~~p~~~~~l~~~~~~ia~lgg~~~~k~~~~pg~~~~w~g~~~l~~~~~g~~~a~~~~~~~~~~~ 474 (474)
T d1musa_ 401 LLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG 474 (474)
T ss_dssp HHHHHHTTTCCTTSCTTBHHHHHHHHHHHTTCCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998734588999999999999999997794457899998575999899999999999999999986374069
|
| >d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Aldehyde reductase (dehydrogenase), ALDH species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=35851.95 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~k~~~n~I~G~~~~~~~~~~v~~P~tg~~i~~~~~a~~~dv~~Ai~~A~~A~~~W~~~s~~~R~~iL~~~a~~L~~~~~~ 80 (474)
T d1euha_ 1 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEK 80 (474)
T ss_dssp CCBCCEEETTEEECCSSEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCEECCEECCCCCCEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96465366683428999779768999888899949899999999999999759873099999999999999999974999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 la~~~~~e~Gk~~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~I~p~n~P~~~~~ 160 (474)
T d1euha_ 81 IGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAG 160 (474)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHH
T ss_pred HHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECEEEEEEECCCCCCCHHHH
T ss_conf 99999997689830001332013788999988876532000122111234578506998503569998656343103443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~aL~aGN~vV~Kps~~~~~~~~~l~~~~~eaglP~gv~~~i~g~~~~~~~~L~~~~~v~~v~ftGs~~~~~~i~~~ 240 (474)
T d1euha_ 161 SKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKM 240 (474)
T ss_dssp HHHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHHHTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHH
T ss_conf 10000332354302113566638999999999984879674997468848999999849882479833764444224444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 a~~k~~~~e~gG~~~~iV~~dAdl~~aa~~i~~~~~~~~Gq~C~a~~~i~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 320 (474)
T d1euha_ 241 AGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDAD 320 (474)
T ss_dssp TTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHHHHHHHHHHHHHHTSCBSCGGGTCS
T ss_pred CCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 13656888527744599989986366899999998617897556664102034445566676666653012347522234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Ptvl~~~~~~~~~~~eE~fgPvl~v~~~~~~deai~~~n~~ 400 (474)
T d1euha_ 321 ITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKS 400 (474)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCEETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCEEEEEEECCHHHHHHHHHCC
T ss_conf 46431057898877777764213000124678788876898996589866323113678678999969999999999779
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~glta~v~s~d~~~~~~~~~~l~~g~v~iN~~~~~~~~~~pfGG~~~SG~G~~~g~~~l~~~~~~k~v~~~~~ 474 (474)
T d1euha_ 401 EYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 474 (474)
T ss_dssp SEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCCSTTSCBCCEETTEESCBSHHHHHHHTEEEEEEEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEECC
T ss_conf 99986999918999999999858788999979978788898846405471576578999997286789999569
|
| >d1musa_ c.55.3.4 (A:) Transposase inhibitor (Tn5 transposase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Transposase inhibitor (Tn5 transposase) domain: Transposase inhibitor (Tn5 transposase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35850.99 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~~~~~~w~~~ef~~~~lgD~Rl~~Rl~~l~~~l~~~~~~sip~~~~~~~a~~~aaYRF~~N~~v~~~~I~~~~~~~t~ 80 (474)
T d1musa_ 1 SALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTV 80 (474)
T ss_dssp CCCSSHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHTTTSCHHHHTTTCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 95332767999986126768747887999999999747699724032289799999999870899999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~r~~~~~~vL~i~DTT~l~~~~~~~~~lG~~~~~~~~~~G~~lHs~l~v~~~~~~PLGl~~~~~w~R~~~~~~~e~KeS~ 160 (474)
T d1musa_ 81 KLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQKASRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESG 160 (474)
T ss_dssp HHHTTCSCEEEEEEEEEEEECSGGGGGSBCSSSTTCSCEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSGGGCSSCGGG
T ss_pred HHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCHHHCHHH
T ss_conf 98525880899916970014887610026656677657648998558986766870047885612444456873435026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 rW~ea~~~~~e~l~~~~~~vV~V~DRe~Diyelf~~~~~~g~~flVR~~~nR~~~~~~~~l~~~~~~~~~~g~~~v~l~~ 240 (474)
T d1musa_ 161 KWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQ 240 (474)
T ss_dssp HHHHHHHHHHHHHGGGGGGEEEEECGGGCCHHHHHHHHHTTCEEEEECCSCCBCTTTCSBHHHHHHTSCCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECC
T ss_conf 67888999998716766527999605466699999887449828985154440246788677887336546418998504
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~r~aR~a~l~vr~~~v~l~~~~~~l~~v~~~e~~~p~g~~~~~W~LLTnl~v~~~~~A~eiv~~Y~~RW 320 (474)
T d1musa_ 241 KGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRW 320 (474)
T ss_dssp EEEECSSCCEEEECCEEEEEEEEEEEEEETGGGEEEEEEEEEEESCCSSSCCCEEEEEESSCCSSHHHHHHHHHHHHTTH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 66544333456633337898622304786178633688999971698887752307997055686162999999984796
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~IE~~fk~lKsg~~~E~~~l~~~~~l~~~~~~~~~ia~r~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~e~~ 400 (474)
T d1musa_ 321 RIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPPQALRAQGLLKEAEHVESQSAETVLTPDECQ 400 (474)
T ss_dssp HHHHHHHHHHTTTCGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------CCBGGGTSCHHHHH
T ss_pred EEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCCHHHHH
T ss_conf 48997500356663203303688999999999999999999999850352233212344443026887866728999999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~l~~~~~~~~~~p~~~~~l~~~~~~ia~lgg~~~~k~~~~pg~~~~w~g~~~l~~~~~g~~~a~~~~~~~~~~~ 474 (474)
T d1musa_ 401 LLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG 474 (474)
T ss_dssp HHHHHHTTTCCTTSCTTBHHHHHHHHHHHTTCCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998734588999999999999999997794457899998575999899999999999999999986374069
|
| >d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-dependent phosphatases superfamily: Metallo-dependent phosphatases family: Protein serine/threonine phosphatase domain: Protein phosphatase-2B (PP-2B, calcineurin A subunit) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35778.02 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
+
T Consensus 1 ~~r~~~~v~~p~~~~~~~~~~f~~~~~p~~~~l~~hf~~egrl~~~~~l~li~~a~~il~~Epnll~i~~Pv~VvGDIHG 80 (473)
T d1auia_ 1 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHG 80 (473)
T ss_dssp CCCSSTTSCCCCCCCBCHHHHBCTTSCBCHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSSEEEECCCTT
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCC
T ss_conf 99878878998987789888478889958899999998659779999999999999999739985996799899985989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 q~~DLl~If~~~G~P~~~~yLFLGDYVDRG~~SlEvlllL~aLKi~yP~~V~LLRGNHE~~~~n~~ygF~~E~~~ky~~~ 160 (473)
T d1auia_ 81 QFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSER 160 (473)
T ss_dssp CHHHHHHHHHHHCCTTTCCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCHHHHHHHHCHH
T ss_conf 99999999997399975628835753267754278999999999848870898678985276614543178888750489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 iy~~~~~~F~~LPLAAiI~~kifcVHGGIsp~l~~l~dI~~I~R~~e~p~~~~~~DLLWSDP~~~~~~~~~~~~~~~ns~ 240 (473)
T d1auia_ 161 VYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTV 240 (473)
T ss_dssp HHHHHHHHHTTSCCEEEETTTEEEESSCCCTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTT
T ss_pred HHHHHHHHHCCCHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999998513502243147089961467876672344442445567998672002211178543466655556666799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 RG~g~~FG~~a~~~FL~~n~L~~IIR~HE~~~~Gy~~~~~~~~~~~~~viTVFSApnYc~~~nN~aavl~~~~~~~~i~q 320 (473)
T d1auia_ 241 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQ 320 (473)
T ss_dssp TTSSEEECHHHHHHHHHHTTCSEEEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCCEEEEEEETTEEEEEE
T ss_pred CCCEEEECHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEE
T ss_conf 99878989389999999759968998682445253342388667888789973798767776873687751488743478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 f~~~~hp~~~p~~~d~f~ws~p~~~e~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~r~~~~l 400 (473)
T d1auia_ 321 FNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICSDDELGSEEDGFDGATAAARKEVIRNKIRAIGKMARVFSVL 400 (473)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------------------
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43799955344412024543789999999999999742374112554545454357999999999999999999999999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 r~e~e~~~~~k~~~p~~~lp~g~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~d~~ne~~p~~ 473 (473)
T d1auia_ 401 REESESVLTLKGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAKGLDRINERMPPR 473 (473)
T ss_dssp -------------------------------------------------------CHHHHHHHHGGGGSCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8866532332268989988840110584121001222211011111456102344189988656664058999
|
| >d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-dependent phosphatases superfamily: Metallo-dependent phosphatases family: Protein serine/threonine phosphatase domain: Protein phosphatase-2B (PP-2B, calcineurin A subunit) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35776.02 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~r~~~~v~~p~~~~~~~~~~f~~~~~p~~~~l~~hf~~egrl~~~~~l~li~~a~~il~~Epnll~i~~Pv~VvGDIHG 80 (473)
T d1auia_ 1 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHG 80 (473)
T ss_dssp CCCSSTTSCCCCCCCBCHHHHBCTTSCBCHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSSEEEECCCTT
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCC
T ss_conf 99878878998987789888478889958899999998659779999999999999999739985996799899985989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 q~~DLl~If~~~G~P~~~~yLFLGDYVDRG~~SlEvlllL~aLKi~yP~~V~LLRGNHE~~~~n~~ygF~~E~~~ky~~~ 160 (473)
T d1auia_ 81 QFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSER 160 (473)
T ss_dssp CHHHHHHHHHHHCCTTTCCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCHHHHHHHHCHH
T ss_conf 99999999997399975628835753267754278999999999848870898678985276614543178888750489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 iy~~~~~~F~~LPLAAiI~~kifcVHGGIsp~l~~l~dI~~I~R~~e~p~~~~~~DLLWSDP~~~~~~~~~~~~~~~ns~ 240 (473)
T d1auia_ 161 VYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTV 240 (473)
T ss_dssp HHHHHHHHHTTSCCEEEETTTEEEESSCCCTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTT
T ss_pred HHHHHHHHHCCCHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999998513502243147089961467876672344442445567998672002211178543466655556666799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 RG~g~~FG~~a~~~FL~~n~L~~IIR~HE~~~~Gy~~~~~~~~~~~~~viTVFSApnYc~~~nN~aavl~~~~~~~~i~q 320 (473)
T d1auia_ 241 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQ 320 (473)
T ss_dssp TTSSEEECHHHHHHHHHHTTCSEEEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCCEEEEEEETTEEEEEE
T ss_pred CCCEEEECHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEE
T ss_conf 99878989389999999759968998682445253342388667888789973798767776873687751488743478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 f~~~~hp~~~p~~~d~f~ws~p~~~e~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~r~~~~l 400 (473)
T d1auia_ 321 FNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICSDDELGSEEDGFDGATAAARKEVIRNKIRAIGKMARVFSVL 400 (473)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------------------
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43799955344412024543789999999999999742374112554545454357999999999999999999999999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 r~e~e~~~~~k~~~p~~~lp~g~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~d~~ne~~p~~ 473 (473)
T d1auia_ 401 REESESVLTLKGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAKGLDRINERMPPR 473 (473)
T ss_dssp -------------------------------------------------------CHHHHHHHHGGGGSCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8866532332268989988840110584121001222211011111456102344189988656664058999
|
| >d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: 2-methylcitrate dehydratase PrpD superfamily: 2-methylcitrate dehydratase PrpD family: 2-methylcitrate dehydratase PrpD domain: 2-methylcitrate dehydratase PrpD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35775.35 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~d~~~~~ia~~~~~~~~~~~~v~~~ak~~ilD~lg~alag~~~~~~~~~~~~~~~~~~~~g~a~v~G~~~~~~~~~AA~ 80 (473)
T d1szqa_ 1 EFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAF 80 (473)
T ss_dssp CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHTTCSCSSTTCBCTTCEECTTSCCEECHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 94278999999982688899999999999999999999932788399999999975268999837843798369999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~Ng~~~h~lD~DD~~~~~~~h~~~~~~~~~la~a~~~~a~~a~a~~~~~sG~~~l~A~v~GyEi~~Ri~~~~~~~~~~~~ 160 (473)
T d1szqa_ 81 NIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLD 160 (473)
T ss_dssp HHHHHHHHTSCSCBBCSSSCBCGGGGHHHHHHHHHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHHHHTTTCCSGGGTBC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99899982022667643357886332123666798875423332037986889999999998866677522455557777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~g~~gaAaa~~~lLgl~~~~~~~AlgiA~~~a~~~~~~~~~~~~~~~k~~~~G~aa~~gv~Aa~lA~~G~~g~~~~l 240 (473)
T d1szqa_ 161 HVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSAL 240 (473)
T ss_dssp THHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTSCBCBCGGGSTTSCCTHHHHHHHHHHHHHHHHHHHHHTTCCCCTTTT
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 64113678999999980388899998999997403203443107787614541677899999999999975887887420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 e~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~K~~p~c~~~h~~i~a~~~l~~~~~~~~~~~~dI~~i~v~~~~~~~~ 320 (473)
T d1szqa_ 241 TAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIR 320 (473)
T ss_dssp TCTTTSHHHHHSTTCCCCCSSCSSSHHHHHCBCCCSSSCCTTTHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECHHHHH
T ss_pred CCCCCCEEEECCCCCHHHHHCCCCCEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEECCCCCHHHHH
T ss_conf 04667414433788555530457872454211446503424566199999999998653256632011010234187774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~p~t~~~A~fS~~y~vA~aL~~G~~~~~~f~~~~l~d~~v~~L~~kV~v~~d~~~~~~~~~~~~~~~~~~V~I~ 400 (473)
T d1szqa_ 321 IIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLE 400 (473)
T ss_dssp HHCCCSCCCSHHHHTTCHHHHHHHHHHHSCCCGGGGSHHHHTCHHHHHHHHTEEEEECHHHHHHHHCTTTCCCCEEEEEE
T ss_pred HHHCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 54215788987874305899999999829885001005443058899987313996174435000585545675489999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 l~DG~~~~~~~v~~p~G~p~~~p~~~~~l~~KF~~~~~~~l~~~~~~~i~~~~~~le~l~~~~v~el~~l~~~ 473 (473)
T d1szqa_ 401 FTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI 473 (473)
T ss_dssp ETTSCBCCCEEECSCTTSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHCHHHHHHSBHHHHHTTTCC
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHCCCCCHHHHHHHHCC
T ss_conf 8789899998714788797779998899999999987633799999999999849854348989999876449
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=100.00 E-value=0 Score=35774.52 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~hvl~~p~p~~gH~~P~~~lA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T d2pq6a1 1 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQD 80 (473)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECCCCC---------CC
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHH
T ss_conf 99899989413657999999999999789969999276467677644686444577875023467777643334203556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (473)
T d2pq6a1 81 VPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGI 160 (473)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999999999888774057888699964742266999999489843201454100132303531133457
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (473)
T d2pq6a1 161 IPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSS 240 (473)
T ss_dssp SSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 77544334444455666323777653236551166640110478999999999987765334443036666768999873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
T d2pq6a1 241 TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSF 320 (473)
T ss_dssp TCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 17864456875345777887665566776656663787777650688860331357533554899999999998669739
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 i~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~Pq~~lL~hp~~~~fItHGG~~s~~Eal~~GVP~lv~P~~~DQ~~na 400 (473)
T d2pq6a1 321 LWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDC 400 (473)
T ss_dssp EEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHH
T ss_pred EEEECCCCCCCCCCCCCCCCHHHCCCCEEEEEECCHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEECCCHHHHHHHH
T ss_conf 99981687655210376200022147668863088799964776759995688408999998599989656411218899
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~rv~~~~G~G~~l~~~~t~~~l~~ai~~vl~d~~~~~~r~~a~~l~~~~~~a~~~gg~s~~~~~~~i~~~~~~ 473 (473)
T d2pq6a1 401 RFICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLLK 473 (473)
T ss_dssp HHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 9999971737861897389999999999976976899999999999999998757997899999999999519
|
| >d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: 2-methylcitrate dehydratase PrpD superfamily: 2-methylcitrate dehydratase PrpD family: 2-methylcitrate dehydratase PrpD domain: 2-methylcitrate dehydratase PrpD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35772.03 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~d~~~~~ia~~~~~~~~~~~~v~~~ak~~ilD~lg~alag~~~~~~~~~~~~~~~~~~~~g~a~v~G~~~~~~~~~AA~ 80 (473)
T d1szqa_ 1 EFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAF 80 (473)
T ss_dssp CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHTTCSCSSTTCBCTTCEECTTSCCEECHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 94278999999982688899999999999999999999932788399999999975268999837843798369999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~Ng~~~h~lD~DD~~~~~~~h~~~~~~~~~la~a~~~~a~~a~a~~~~~sG~~~l~A~v~GyEi~~Ri~~~~~~~~~~~~ 160 (473)
T d1szqa_ 81 NIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLD 160 (473)
T ss_dssp HHHHHHHHTSCSCBBCSSSCBCGGGGHHHHHHHHHHHHHHHHHTTCCCCBHHHHHHHHHHHHHHHHHHTTTCCSGGGTBC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99899982022667643357886332123666798875423332037986889999999998866677522455557777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~g~~gaAaa~~~lLgl~~~~~~~AlgiA~~~a~~~~~~~~~~~~~~~k~~~~G~aa~~gv~Aa~lA~~G~~g~~~~l 240 (473)
T d1szqa_ 161 HVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSAL 240 (473)
T ss_dssp THHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTSCBCBCGGGSTTSCCTHHHHHHHHHHHHHHHHHHHHHTTCCCCTTTT
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 64113678999999980388899998999997403203443107787614541677899999999999975887887420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 e~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~K~~p~c~~~h~~i~a~~~l~~~~~~~~~~~~dI~~i~v~~~~~~~~ 320 (473)
T d1szqa_ 241 TAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIR 320 (473)
T ss_dssp TCTTTSHHHHHSTTCCCCCSSCSSSHHHHHCBCCCSSSCCTTTHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECHHHHH
T ss_pred CCCCCCEEEECCCCCHHHHHCCCCCEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEECCCCCHHHHH
T ss_conf 04667414433788555530457872454211446503424566199999999998653256632011010234187774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~p~t~~~A~fS~~y~vA~aL~~G~~~~~~f~~~~l~d~~v~~L~~kV~v~~d~~~~~~~~~~~~~~~~~~V~I~ 400 (473)
T d1szqa_ 321 IIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLE 400 (473)
T ss_dssp HHCCCSCCCSHHHHTTCHHHHHHHHHHHSCCCGGGGSHHHHTCHHHHHHHHTEEEEECHHHHHHHHCTTTCCCCEEEEEE
T ss_pred HHHCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 54215788987874305899999999829885001005443058899987313996174435000585545675489999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 l~DG~~~~~~~v~~p~G~p~~~p~~~~~l~~KF~~~~~~~l~~~~~~~i~~~~~~le~l~~~~v~el~~l~~~ 473 (473)
T d1szqa_ 401 FTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI 473 (473)
T ss_dssp ETTSCBCCCEEECSCTTSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHCHHHHHHSBHHHHHTTTCC
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHCCCCCHHHHHHHHCC
T ss_conf 8789899998714788797779998899999999987633799999999999849854348989999876449
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=100.00 E-value=0 Score=35771.27 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~hvl~~p~p~~gH~~P~~~lA~~L~~rGH~Vt~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T d2pq6a1 1 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQD 80 (473)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECCCCC---------CC
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHH
T ss_conf 99899989413657999999999999789969999276467677644686444577875023467777643334203556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (473)
T d2pq6a1 81 VPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGI 160 (473)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999999999888774057888699964742266999999489843201454100132303531133457
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (473)
T d2pq6a1 161 IPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSS 240 (473)
T ss_dssp SSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 77544334444455666323777653236551166640110478999999999987765334443036666768999873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~ 320 (473)
T d2pq6a1 241 TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSF 320 (473)
T ss_dssp TCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 17864456875345777887665566776656663787777650688860331357533554899999999998669739
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 i~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~Pq~~lL~hp~~~~fItHGG~~s~~Eal~~GVP~lv~P~~~DQ~~na 400 (473)
T d2pq6a1 321 LWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDC 400 (473)
T ss_dssp EEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHH
T ss_pred EEEECCCCCCCCCCCCCCCCHHHCCCCEEEEEECCHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEECCCHHHHHHHH
T ss_conf 99981687655210376200022147668863088799964776759995688408999998599989656411218899
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~rv~~~~G~G~~l~~~~t~~~l~~ai~~vl~d~~~~~~r~~a~~l~~~~~~a~~~gg~s~~~~~~~i~~~~~~ 473 (473)
T d2pq6a1 401 RFICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLLK 473 (473)
T ss_dssp HHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 9999971737861897389999999999976976899999999999999998757997899999999999519
|
| >d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Calcium ATPase, transmembrane domain M superfamily: Calcium ATPase, transmembrane domain M family: Calcium ATPase, transmembrane domain M domain: Calcium ATPase, transmembrane domain M species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=0 Score=35700.49 Aligned_cols=1 Identities=0% Similarity=-1.159 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 m~~~h~~~~e~v~~~l~td~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~ 80 (472)
T d1wpga4 1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE 80 (472)
T ss_dssp CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 95734499999999969693559699999999980499879999999999999999838999999999999999998732
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~I~~vv~~n~~i~~~qe~~a~~~~~~l~~~~~~~~~~~~~P~d~~l~~~g~~i~~~~~~~~~~~~~~~ 160 (472)
T d1wpga4 81 GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLIN 160 (472)
T ss_dssp TTSTTSSSHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHGGGSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHEEEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65320237676663112446525776775017778887752122235665864888999999999899997879999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ai~l~V~~iPEgLp~~vti~La~~~~rmak~~~lVr~L~avE~~g~~~~~~~~k~i~ 240 (472)
T d1wpga4 161 IGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIR 240 (472)
T ss_dssp CTTSSSCCSSSCSSSCGGGHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTEEESCTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998610468999999999999999867516899999999999999986366066589999999998888677640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~l~~n~~~v~~~~~~~~l~~p~pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~ 320 (472)
T d1wpga4 241 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGG 320 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCSCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 13343699999999999739986423799999998758889999963888544304999999756649999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~T~~F~~lv~~q~~~~~~~rs~~~s~ 400 (472)
T d1wpga4 321 YVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSL 400 (472)
T ss_dssp HHHHHHHHHHHHHTTTSSSSCCCTTSGGGGTTTTSSSTTTTCCSCGGGGGCHHHHHHHHHHHHHHHHHHHHTTSCSSCCT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999999972379987678776776406776544652034556767899999999999999999982577542
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~~~~~~~~~El~K~~~R~~~~~ 472 (472)
T d1wpga4 401 MRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNYLEG 472 (472)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHHTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 225763169999999999999999998667788880658899999999999999999999999983108899
|
| >d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Mammalian cytochrome P450 3a4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35700.47 Aligned_cols=1 Identities=100% Similarity=0.471 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~iPGP~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~l~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~ 80 (472)
T d1tqna_ 1 HSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRP 80 (472)
T ss_dssp CCTTHHHHTTCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCBCCC
T ss_pred CCCCCHHHCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99640321699988984842088876178999999999970998999879911999899999999985588100368866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~i~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~dl~~~~~~~~~~v~~~~ 160 (472)
T d1tqna_ 81 FGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITST 160 (472)
T ss_dssp CSCCGGGGGSTTTCCHHHHHHHHHHTTGGGSHHHHHTTHHHHHHHHHHHHHHHHHHHHHSSCEEHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHE
T ss_conf 53212368835536848988766515752110023203530122110000002333323454202444401101021310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (472)
T d1tqna_ 161 SFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKH 240 (472)
T ss_dssp SSCCCCCGGGCTTCHHHHHHTTCCCCCTTSHHHHHHHHCGGGHHHHHHTTCCSSCHHHHHHHHHHHHHHHTTTTTTCSCC
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 01665332346310136777777654201310001344432332000244222312456788999987640012233343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~ls~~ei~~~~l~l~~Ag~~tta~~l~~~l~~L~~~Pe~~~klr~Ei~~~~~~~~~~~~ 320 (472)
T d1tqna_ 241 RVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTY 320 (472)
T ss_dssp CCCHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTCCCCH
T ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEHEECCCCCCCHH
T ss_conf 32001222100222233343200246777665422102454443322121123456853223431100100365320057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~l~~~~~l~a~i~E~lRl~p~~~~~~r~~~~d~~~~g~~ipkGt~v~~~~~~~~~d~~~~~dp~~F~PeRfl~~~~~~~ 400 (472)
T d1tqna_ 321 DTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNI 400 (472)
T ss_dssp HHHHHCHHHHHHHHHHHHHCCTTCCEEEECCSCEEETTEEECTTCEEEECHHHHHTCTTTSSSTTSCCGGGGSTTTGGGC
T ss_pred HHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECHHHHCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 77613522030144401247752243321256755568515899989984015105811079811248543588774558
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~~~~~~~FG~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~R~~~ 472 (472)
T d1tqna_ 401 DPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVESRDGT 472 (472)
T ss_dssp CTTTSCTTCCSTTSCTTHHHHHHHHHHHHHHHHTTEEEECCTTCCSSCCBCSSSSCCBSSCCEEEEEETTCC
T ss_pred CCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCEECCCEEEEECCCEEEEEEECCCC
T ss_conf 986240778988468469999999999999999858999699987886221224884389879999979899
|
| >d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Mammalian cytochrome P450 3a4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35697.50 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~iPGP~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~l~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~ 80 (472)
T d1tqna_ 1 HSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRP 80 (472)
T ss_dssp CCTTHHHHTTCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCBCCC
T ss_pred CCCCCHHHCCCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99640321699988984842088876178999999999970998999879911999899999999985588100368866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~i~~~~g~~~~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~dl~~~~~~~~~~v~~~~ 160 (472)
T d1tqna_ 81 FGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITST 160 (472)
T ss_dssp CSCCGGGGGSTTTCCHHHHHHHHHHTTGGGSHHHHHTTHHHHHHHHHHHHHHHHHHHHHSSCEEHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHE
T ss_conf 53212368835536848988766515752110023203530122110000002333323454202444401101021310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (472)
T d1tqna_ 161 SFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKH 240 (472)
T ss_dssp SSCCCCCGGGCTTCHHHHHHTTCCCCCTTSHHHHHHHHCGGGHHHHHHTTCCSSCHHHHHHHHHHHHHHHTTTTTTCSCC
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 01665332346310136777777654201310001344432332000244222312456788999987640012233343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~ls~~ei~~~~l~l~~Ag~~tta~~l~~~l~~L~~~Pe~~~klr~Ei~~~~~~~~~~~~ 320 (472)
T d1tqna_ 241 RVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTY 320 (472)
T ss_dssp CCCHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTCCCCH
T ss_pred CCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEHEECCCCCCCHH
T ss_conf 32001222100222233343200246777665422102454443322121123456853223431100100365320057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~l~~~~~l~a~i~E~lRl~p~~~~~~r~~~~d~~~~g~~ipkGt~v~~~~~~~~~d~~~~~dp~~F~PeRfl~~~~~~~ 400 (472)
T d1tqna_ 321 DTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNI 400 (472)
T ss_dssp HHHHHCHHHHHHHHHHHHHCCTTCCEEEECCSCEEETTEEECTTCEEEECHHHHHTCTTTSSSTTSCCGGGGSTTTGGGC
T ss_pred HHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECHHHHCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 77613522030144401247752243321256755568515899989984015105811079811248543588774558
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~~~~~~FG~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~R~~~ 472 (472)
T d1tqna_ 401 DPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVESRDGT 472 (472)
T ss_dssp CTTTSCTTCCSTTSCTTHHHHHHHHHHHHHHHHTTEEEECCTTCCSSCCBCSSSSCCBSSCCEEEEEETTCC
T ss_pred CCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCEECCCEEEEECCCEEEEEEECCCC
T ss_conf 986240778988468469999999999999999858999699987886221224884389879999979899
|
| >d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Calcium ATPase, transmembrane domain M superfamily: Calcium ATPase, transmembrane domain M family: Calcium ATPase, transmembrane domain M domain: Calcium ATPase, transmembrane domain M species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=0 Score=35697.48 Aligned_cols=1 Identities=0% Similarity=-0.627 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~h~~~~e~v~~~l~td~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~ 80 (472)
T d1wpga4 1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE 80 (472)
T ss_dssp CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 95734499999999969693559699999999980499879999999999999999838999999999999999998732
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~I~~vv~~n~~i~~~qe~~a~~~~~~l~~~~~~~~~~~~~P~d~~l~~~g~~i~~~~~~~~~~~~~~~ 160 (472)
T d1wpga4 81 GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLIN 160 (472)
T ss_dssp TTSTTSSSHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHGGGSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHEEEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65320237676663112446525776775017778887752122235665864888999999999899997879999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~ai~l~V~~iPEgLp~~vti~La~~~~rmak~~~lVr~L~avE~~g~~~~~~~~k~i~ 240 (472)
T d1wpga4 161 IGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIR 240 (472)
T ss_dssp CTTSSSCCSSSCSSSCGGGHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTEEESCTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998610468999999999999999867516899999999999999986366066589999999998888677640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~l~~n~~~v~~~~~~~~l~~p~pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~ 320 (472)
T d1wpga4 241 YLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGG 320 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCSCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 13343699999999999739986423799999998758889999963888544304999999756649999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~T~~F~~lv~~q~~~~~~~rs~~~s~ 400 (472)
T d1wpga4 321 YVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSL 400 (472)
T ss_dssp HHHHHHHHHHHHHTTTSSSSCCCTTSGGGGTTTTSSSTTTTCCSCGGGGGCHHHHHHHHHHHHHHHHHHHHTTSCSSCCT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99999999999999972379987678776776406776544652034556767899999999999999999982577542
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~~~~~~~~~El~K~~~R~~~~~ 472 (472)
T d1wpga4 401 MRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNYLEG 472 (472)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHHTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 225763169999999999999999998667788880658899999999999999999999999983108899
|
| >d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant x100 [TaxId: 105351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glucoamylase domain: Glucoamylase species: Aspergillus awamori, variant x100 [TaxId: 105351]
Probab=100.00 E-value=0 Score=35696.04 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~ni~~~g~~~~~a~~GaiIASPs~s~PDYrY~W~RDaA~t~~AL~~~~~~~~~~~~~~i~~ 80 (472)
T d1gaia_ 1 ATLDSWLSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDLFRNGDTDLLSTIEH 80 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTBTTTCTTCTTCCTTCBCSCSCBSSSBCCSEEHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 96789999858999999998129876524689988598548899999678645329999999998341657999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~i~~~~~lq~~~~~~G~~~~~~l~~p~~~~dg~~~~~~wgrpq~dG~al~~~al~~~~~~l~~~~~~~~~~~~~w~~v~~ 160 (472)
T d1gaia_ 81 YISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSWGRPQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRN 160 (472)
T ss_dssp HHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBCCSCCSCCCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98522554025688875567766675052068757776777641149999999999999999737760113888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~d~v~~~w~~pd~dlWEE~~g~h~fT~a~~~~AL~~aa~lA~~~g~~a~~~~~~A~~i~~~l~~~w~~~~~~~~~~~~~ 240 (472)
T d1gaia_ 161 DLSYVAQYWNQTGYDLWEEVNGSSFFTIAVQHRALVEGSAFATAVGSSCSWCDSQAPQILCYLQSFWTGSYILANFDSSR 240 (472)
T ss_dssp HHHHHHHHTTSCEECTTSCCEEEEHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHGGGBCSSSBCSEESCCS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 99999985797667887334785545699999999999999987385378999999999999986067753020145666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~glDa~~ll~~~~~~d~~~~~d~~~~~p~d~r~l~t~~~v~~~l~~~y~in~~~~~~~~~gi~RY~~D~Y~~GnpW~l~T 320 (472)
T d1gaia_ 241 SGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALANHKEVVDSFRSIYTLNDGLSDSEAVAVGRYPEDSYYNGNPWFLCT 320 (472)
T ss_dssp CCCCTHHHHHHHTTCCTTCCSCTTTTCTTSHHHHHHHHHHHHTTTTTCGGGTTCCTTSCCCCCSCTTCCGGGSCCBHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 77633453110256672113334456899657775399999987554000135667774438607877688988045526
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~Ae~ly~~~~~~~~~g~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ad~~L~~~~~~~~~~G~L~EQ 400 (472)
T d1gaia_ 321 LAAAEQLYDALYQWDKQGSLEITDVSLDFFKALYSGAATGTYSSSSSTYSSIVSAVKTFADGFVSIVETHAASNGSLSEQ 400 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEECTTTHHHHHHHCTTCCSEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCSE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999866523775555210555641033100233344534689999999988899999999867988877723
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~d~~tG~p~sa~pLtWShA~~i~A~~~r~~~~p~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~ 472 (472)
T d1gaia_ 401 FDKSDGDELSARDLTWSYAALLTANNRRNSVVPPSWGETSASSVPGTCAATSASGTYSSVTVTSWPSIVATG 472 (472)
T ss_dssp ECTTTCCEESSSSCHHHHHHHHHHHHHHTTCCCCCCSGGGSCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 279999889877754369999999998617689984423467899855577777753277657788765779
|
| >d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant x100 [TaxId: 105351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glucoamylase domain: Glucoamylase species: Aspergillus awamori, variant x100 [TaxId: 105351]
Probab=100.00 E-value=0 Score=35693.07 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~ni~~~g~~~~~a~~GaiIASPs~s~PDYrY~W~RDaA~t~~AL~~~~~~~~~~~~~~i~~ 80 (472)
T d1gaia_ 1 ATLDSWLSNEATVARTAILNNIGADGAWVSGADSGIVVASPSTDNPDYFYTWTRDSGLVIKTLVDLFRNGDTDLLSTIEH 80 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTBTTTCTTCTTCCTTCBCSCSCBSSSBCCSEEHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 96789999858999999998129876524689988598548899999678645329999999998341657999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~i~~~~~lq~~~~~~G~~~~~~l~~p~~~~dg~~~~~~wgrpq~dG~al~~~al~~~~~~l~~~~~~~~~~~~~w~~v~~ 160 (472)
T d1gaia_ 81 YISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSWGRPQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRN 160 (472)
T ss_dssp HHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBCCSCCSCCCTHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98522554025688875567766675052068757776777641149999999999999999737760113888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~d~v~~~w~~pd~dlWEE~~g~h~fT~a~~~~AL~~aa~lA~~~g~~a~~~~~~A~~i~~~l~~~w~~~~~~~~~~~~~ 240 (472)
T d1gaia_ 161 DLSYVAQYWNQTGYDLWEEVNGSSFFTIAVQHRALVEGSAFATAVGSSCSWCDSQAPQILCYLQSFWTGSYILANFDSSR 240 (472)
T ss_dssp HHHHHHHHTTSCEECTTSCCEEEEHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHGGGBCSSSBCSEESCCS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 99999985797667887334785545699999999999999987385378999999999999986067753020145666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~glDa~~ll~~~~~~d~~~~~d~~~~~p~d~r~l~t~~~v~~~l~~~y~in~~~~~~~~~gi~RY~~D~Y~~GnpW~l~T 320 (472)
T d1gaia_ 241 SGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALANHKEVVDSFRSIYTLNDGLSDSEAVAVGRYPEDSYYNGNPWFLCT 320 (472)
T ss_dssp CCCCTHHHHHHHTTCCTTCCSCTTTTCTTSHHHHHHHHHHHHTTTTTCGGGTTCCTTSCCCCCSCTTCCGGGSCCBHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 77633453110256672113334456899657775399999987554000135667774438607877688988045526
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~Ae~ly~~~~~~~~~g~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ad~~L~~~~~~~~~~G~L~EQ 400 (472)
T d1gaia_ 321 LAAAEQLYDALYQWDKQGSLEITDVSLDFFKALYSGAATGTYSSSSSTYSSIVSAVKTFADGFVSIVETHAASNGSLSEQ 400 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEECTTTHHHHHHHCTTCCSEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCSE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999866523775555210555641033100233344534689999999988899999999867988877723
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~d~~tG~p~sa~pLtWShA~~i~A~~~r~~~~p~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~ 472 (472)
T d1gaia_ 401 FDKSDGDELSARDLTWSYAALLTANNRRNSVVPPSWGETSASSVPGTCAATSASGTYSSVTVTSWPSIVATG 472 (472)
T ss_dssp ECTTTCCEESSSSCHHHHHHHHHHHHHHTTCCCCCCSGGGSCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 279999889877754369999999998617689984423467899855577777753277657788765779
|
| >d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Perfringolysin superfamily: Perfringolysin family: Perfringolysin domain: Perfringolysin species: Clostridium perfringens [TaxId: 1502]
Probab=100.00 E-value=0 Score=35629.35 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~i~~~i~~l~y~~~~il~~~ge~v~~~~~~~g~~~~~~~ivve~~kksit~~~~disi~d~~n~~iYPGAl~l 80 (471)
T d1pfoa_ 1 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQL 80 (471)
T ss_dssp CCTTSCCSHHHHHHTCCCCTTTSSCEECCCCCCCCSEEEEECSSEEEEEEEEEEEEEECCSSEECSCTTTCCCCTTCEEE
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 94421455765543056682311123673402347700023798089999775144578776588637677066735631
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 a~~~l~en~Pt~i~v~R~pitiSvdLPG~~~~~~~~v~~PT~S~Vr~aVn~Lv~~wn~~ys~~~~~~ar~~Y~~~~vyS~ 160 (471)
T d1pfoa_ 81 ADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSK 160 (471)
T ss_dssp CSHHHHTTCCCBCCCCBCCEEEEECCTTCTTSCEEEESSCCHHHHHHHHHHHHHHHHHHTTTCCEEECEEEEEEEECCCH
T ss_pred CCHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHCH
T ss_conf 62567567985576347863899978998888847745887677899999999986531454224302434426533058
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~Ql~~~~g~~fk~~~~sl~~~f~~~~~~ek~~~~v~fkQiyYTVs~D~P~spsd~F~~~VT~~dL~~~gv~~~~pPvYIS 240 (471)
T d1pfoa_ 161 SQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVS 240 (471)
T ss_dssp HHHHHHHTSCHHHHHHHTCCCHHHHHTTSSEEEEEEEEEEEEEEEECCCSSHHHHBCTTCCHHHHHHTTCBTTBCEEEEE
T ss_pred HHHHHHCCCCHHHHCCCCCCCHHHHHCCCEEEEEEEEEEEEEEEEECCCCCHHHHCCCCCCHHHHHHCCCCCCCCCEEEE
T ss_conf 98987608663443674444503441672259999988878998734889977844777688888754678889975888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 SVtYGR~~yv~lETts~s~~VkAAf~a~i~n~~~~~~~E~~~Il~nS~ikv~i~GG~a~~~~Kvit~~~d~f~~iI~~~~ 320 (471)
T d1pfoa_ 241 NVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNA 320 (471)
T ss_dssp EEEEEEEEEEEEEESCCCTTHHHHHHHHHHTCGGGGSHHHHHHHHTEEEEEEEEETTSCTTCCEEESCHHHHHHHHHHTC
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEECCCHHHCCEEECCCHHHHHHHHHCCC
T ss_conf 65034289999982474789999986651377534248999877516169999777713240541388899999984387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~S~~~pgvPIsYt~s~LKDNs~a~V~~~tdYiEt~~~~y~~g~i~l~h~g~yva~f~i~wde~~yd~~g~e~~~~k~w~ 400 (471)
T d1pfoa_ 321 TFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWD 400 (471)
T ss_dssp EEETTSCCCEEEEEEEETTTCCBCCCCEEEEEEEEEEEEEECEEEEEEECCSSCEEEEEEEEEEEECTTSCEEEEEEECT
T ss_pred EECCCCCCCCEEEEEEEECCCCEEEEECCCCEEEECCCCCCCCCEEEECCCEEEEEEEEEEEECCCCCCCCEECCCCCCC
T ss_conf 11267899673899988417953898634306873131013664577405527999999842123178885850112346
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 gn~~~~ta~f~t~i~l~~narni~v~~~e~tGlaWe~wr~i~~~~~~pl~~~~~~~~~gttl~p~~~~~~~ 471 (471)
T d1pfoa_ 401 GNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 471 (471)
T ss_dssp TTTCCBCSSEEEEEEECTTEEEEEEEEEECCSSSGGGSCEEEEESSCCCCSEEEEEEEECSSSEEEEEEEC
T ss_pred CCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCC
T ss_conf 77754443313777548984045899997465615778887514567876722898637463476566579
|
| >d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Perfringolysin superfamily: Perfringolysin family: Perfringolysin domain: Perfringolysin species: Clostridium perfringens [TaxId: 1502]
Probab=100.00 E-value=0 Score=35626.27 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~i~~~i~~l~y~~~~il~~~ge~v~~~~~~~g~~~~~~~ivve~~kksit~~~~disi~d~~n~~iYPGAl~l 80 (471)
T d1pfoa_ 1 DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVNDRTYPGALQL 80 (471)
T ss_dssp CCTTSCCSHHHHHHTCCCCTTTSSCEECCCCCCCCSEEEEECSSEEEEEEEEEEEEEECCSSEECSCTTTCCCCTTCEEE
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 94421455765543056682311123673402347700023798089999775144578776588637677066735631
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 a~~~l~en~Pt~i~v~R~pitiSvdLPG~~~~~~~~v~~PT~S~Vr~aVn~Lv~~wn~~ys~~~~~~ar~~Y~~~~vyS~ 160 (471)
T d1pfoa_ 81 ADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPARTQYSESMVYSK 160 (471)
T ss_dssp CSHHHHTTCCCBCCCCBCCEEEEECCTTCTTSCEEEESSCCHHHHHHHHHHHHHHHHHHTTTCCEEECEEEEEEEECCCH
T ss_pred CCHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHCH
T ss_conf 62567567985576347863899978998888847745887677899999999986531454224302434426533058
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~Ql~~~~g~~fk~~~~sl~~~f~~~~~~ek~~~~v~fkQiyYTVs~D~P~spsd~F~~~VT~~dL~~~gv~~~~pPvYIS 240 (471)
T d1pfoa_ 161 SQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMVS 240 (471)
T ss_dssp HHHHHHHTSCHHHHHHHTCCCHHHHHTTSSEEEEEEEEEEEEEEEECCCSSHHHHBCTTCCHHHHHHTTCBTTBCEEEEE
T ss_pred HHHHHHCCCCHHHHCCCCCCCHHHHHCCCEEEEEEEEEEEEEEEEECCCCCHHHHCCCCCCHHHHHHCCCCCCCCCEEEE
T ss_conf 98987608663443674444503441672259999988878998734889977844777688888754678889975888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 SVtYGR~~yv~lETts~s~~VkAAf~a~i~n~~~~~~~E~~~Il~nS~ikv~i~GG~a~~~~Kvit~~~d~f~~iI~~~~ 320 (471)
T d1pfoa_ 241 NVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNA 320 (471)
T ss_dssp EEEEEEEEEEEEEESCCCTTHHHHHHHHHHTCGGGGSHHHHHHHHTEEEEEEEEETTSCTTCCEEESCHHHHHHHHHHTC
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEECCCHHHCCEEECCCHHHHHHHHHCCC
T ss_conf 65034289999982474789999986651377534248999877516169999777713240541388899999984387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~S~~~pgvPIsYt~s~LKDNs~a~V~~~tdYiEt~~~~y~~g~i~l~h~g~yva~f~i~wde~~yd~~g~e~~~~k~w~ 400 (471)
T d1pfoa_ 321 TFSTKNPAYPISYTSVFLKDNSVAAVHNKTDYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWD 400 (471)
T ss_dssp EEETTSCCCEEEEEEEETTTCCBCCCCEEEEEEEEEEEEEECEEEEEEECCSSCEEEEEEEEEEEECTTSCEEEEEEECT
T ss_pred EECCCCCCCCEEEEEEEECCCCEEEEECCCCEEEECCCCCCCCCEEEECCCEEEEEEEEEEEECCCCCCCCEECCCCCCC
T ss_conf 11267899673899988417953898634306873131013664577405527999999842123178885850112346
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 gn~~~~ta~f~t~i~l~~narni~v~~~e~tGlaWe~wr~i~~~~~~pl~~~~~~~~~gttl~p~~~~~~~ 471 (471)
T d1pfoa_ 401 GNYQDKTAHYSTVIPLEANARNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN 471 (471)
T ss_dssp TTTCCBCSSEEEEEEECTTEEEEEEEEEECCSSSGGGSCEEEEESSCCCCSEEEEEEEECSSSEEEEEEEC
T ss_pred CCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCC
T ss_conf 77754443313777548984045899997465615778887514567876722898637463476566579
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=35620.86 Aligned_cols=1 Identities=0% Similarity=0.038 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
+
T Consensus 1 ~~hil~~p~p~~GH~~P~l~La~~L~~~rGH~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (471)
T d2vcha1 1 TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVDLTDLSSSTRIESR 80 (471)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCCCTTSCTTCCHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHH
T ss_conf 98899978432767999999999999735998999968875134555325566888752334586565554432126999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (471)
T d2vcha1 81 ISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFREL 160 (471)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHHHCCSCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999998999999999987338998489983342678999999689961234664156777614764223467665555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
T d2vcha1 161 TEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNI 240 (471)
T ss_dssp SSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCCEEECCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 66546544222100011112234421789999999875213543331268888777775211136888971675200035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
T d2vcha1 241 GKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPL 320 (471)
T ss_dssp SCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGG
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 76555555630678988742775442002565447898999999987786068769985366665531001344442034
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~lp~~~~~~~~~~nv~~~~w~Pq~~lL~hp~~~~fVtHGG~gS~~EAl~~GvP~v~~P~~~DQ~~nA~rv~e~lG~Gv~ 400 (471)
T d2vcha1 321 TFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 400 (471)
T ss_dssp GGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEEC
T ss_pred HHCCCHHHHHCCCCCEEECCCCCHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHEEEEE
T ss_conf 31780256651678755216578999865765788970688428999998599989714401228899999997204899
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 l~~~~~~~~t~~~l~~ai~~vl~~~~~~~~r~ra~~l~e~~~~a~~~gG~s~~~~~~~~~~~~~~~~~~~~ 471 (471)
T d2vcha1 401 PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHKKELEQ 471 (471)
T ss_dssp CCCCTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 72487886979999999999967947899999999999999998717997899999999999986676339
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=35619.11 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~p~~~~~~~~~~~g~~~~~si~el~~~IP~~~~~~~~l~LP~~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~hy~P~ 80 (471)
T d1wyub1 1 SFPLIFERSRKGRRGLKLVKAVPKAEDLIPKEHLREVPPRLPEVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPK 80 (471)
T ss_dssp CCCCHHHHCCTTCCCCCCCSSCCCHHHHSCGGGBCSSCCCCCCCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCH
T ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99843025767876467777525656448998871898999998999999999999957778563515784526746810
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~ 160 (471)
T d1wyub1 81 LHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLV 160 (471)
T ss_dssp HHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEE
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 21047888755289998788899999999999999999587763556621778999999888877653066555544567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~ 240 (471)
T d1wyub1 161 PDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGA 240 (471)
T ss_dssp ETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGG
T ss_pred CCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 75445410112201342121123422112110245554302444300003787555430013567787750665202233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~act 320 (471)
T d1wyub1 241 NLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFY 320 (471)
T ss_dssp GGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTT
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 13555301256764566313553433356655665656401111344203787630378733344688754455200114
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 nqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~ff~EFvv~~~~~~~~~~i~k~L~~~G~~~ 400 (471)
T d1wyub1 321 GNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHP 400 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 41999999999999718156778799999999999998754593205676502677432788998999999998749888
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~~~~~~ap~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T d1wyub1 401 PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKEWLENAPYSTPVRRLDELRANKHPKLTYFD 471 (471)
T ss_dssp CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCHHHHHTCCCSSSSCSBCHHHHHHSCBCSSSC
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 74567677899699940788999999999999999997347789739867887765543354087224679
|
| >d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Di-heme elbow motif domain: Cytochrome c nitrite reductase species: Wolinella succinogenes [TaxId: 844]
Probab=100.00 E-value=0 Score=35619.05 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~w~~~yP~qy~~~~~t~e~~~~~~~l~~~P~l~~l~aGy~f~~~y~~~RGH~y~~~D~~~t~R~~ 80 (471)
T d1fs7a_ 1 KTAHSQGIEGKAMSEEWARYYPRQFDSWKKTKESDNITDMLKEKPALVVAWAGYPFSKDYNAPRGHYYALQDNINTLRTG 80 (471)
T ss_dssp CCTTTTCCTTTTSGGGGTTTCHHHHHHHHGGGGCCCCCBHHHHCTHHHHHTTTSGGGTCCBCCCCGGGHHHHHHHSGGGC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 96101132461168999776669999997403578764355418038887386534021167677615312376410357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~g~~p~sC~~ChS~~~~~~~~~~G~~~~~~~~~~~~~~~i~~~IgC~~CH~p~s~~lr~~rp~~~~a~~~~g~~ 160 (471)
T d1fs7a_ 81 APVDGKTGPLPSACWTCKSPDVPRIIEQDGELEYFTGKWAKYGDEIVNTIGCYNCHDDKSAELKSKVPYLDRGLSAAGFK 160 (471)
T ss_dssp CCSSTTCSSSBGGGGTTTCTHHHHHHHHHCHHHHTBSBGGGGTTTCCCCSCHHHHBCTTTCCBCCCCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCCCEECCHHHHHHHHHCCCC
T ss_conf 77765569988876467997624899851742223587888730689987254539998745132356478999854887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~t~~~~rs~vCaQCHvey~~~~~~~~~~~~~~~~~~~~~~p~~~G~~~e~~~~yyd~~~f~d~~h~~sg~~~~kaq 240 (471)
T d1fs7a_ 161 TFAESTHQEKRSLVCAQCHVEYYFKKTEWKDDKGVDKTAMVVTLPWSKGISTEQMEAYYDEINFADWTHGISKTPMLKAQ 240 (471)
T ss_dssp CTTTSCHHHHHHHHHHTTSSCCEEEEEEEECTTCCEEEEEEEECCCTTCSSHHHHHHHHHHTTCCSEECTTTCCEECCCC
T ss_pred CCCCCCHHHHHCCHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 61000656664216776236223157766677544466655457875788888999982578877775467677721236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 Hpe~e~~~~s~H~~~GvsC~dCHMP~~~~~g~~~tdH~v~sP~~~~~~aC~~CH~ds~e~l~~~v~~~~~~~~~~~~~~~ 320 (471)
T d1fs7a_ 241 HPDWELYKTGIHGQKGVSCADCHMPYTQEGAVKYSDHKVGNPLDNMDKSCMNCHRESEQKLKDIVKQKFERKEFLQDIAF 320 (471)
T ss_dssp CCHHHHHHHSHHHHTTCCHHHHHSCEEEETTEEEECCCCSCGGGGHHHHTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85300014575656898445412531036885533477778333330551202775499999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~l~~a~~~~~~a~~~g~~~~~~~~a~~~~r~Aq~~wd~~~ae~s~gfHnP~~a~r~L~~s~~~a~~a~~~l~~~l~~~~ 400 (471)
T d1fs7a_ 321 DNIGKAHLETGKAMELGATDAELKEIRTHIRHAQWRADMAIAGHGSFFHAPEEVLRLLASGNEEAQKARIKLVKVLAKYG 400 (471)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998759998999999999899999999987258755668899999999899999999999999988636
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~~~d~~~k~~a~~~~g~~~~~~~~~k~~f~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T d1fs7a_ 401 AIDYVAPDFETKEKAQKLAKVDMEAFIAEKLKFKQTLEQEWKKQAIAKGRLNPESLKGVDEKSSYYDKTKK 471 (471)
T ss_dssp CTTCCCCCCCSHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHHHHTSCCGGGGTTTTSBCSSCBCSCC
T ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 98876688426999999809982221367999998751545999997599984443214543134554049
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=35618.87 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~hil~~p~p~~GH~~P~l~La~~L~~~rGH~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (471)
T d2vcha1 1 TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVDLTDLSSSTRIESR 80 (471)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCCCTTSCTTCCHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHH
T ss_conf 98899978432767999999999999735998999968875134555325566888752334586565554432126999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (471)
T d2vcha1 81 ISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFREL 160 (471)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHHHCCSCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999998999999999987338998489983342678999999689961234664156777614764223467665555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
T d2vcha1 161 TEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNI 240 (471)
T ss_dssp SSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCCEEECCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 66546544222100011112234421789999999875213543331268888777775211136888971675200035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (471)
T d2vcha1 241 GKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPL 320 (471)
T ss_dssp SCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGG
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 76555555630678988742775442002565447898999999987786068769985366665531001344442034
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~lp~~~~~~~~~~nv~~~~w~Pq~~lL~hp~~~~fVtHGG~gS~~EAl~~GvP~v~~P~~~DQ~~nA~rv~e~lG~Gv~ 400 (471)
T d2vcha1 321 TFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALR 400 (471)
T ss_dssp GGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEEC
T ss_pred HHCCCHHHHHCCCCCEEECCCCCHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHEEEEE
T ss_conf 31780256651678755216578999865765788970688428999998599989714401228899999997204899
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 l~~~~~~~~t~~~l~~ai~~vl~~~~~~~~r~ra~~l~e~~~~a~~~gG~s~~~~~~~~~~~~~~~~~~~~ 471 (471)
T d2vcha1 401 PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHKKELEQ 471 (471)
T ss_dssp CCCCTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 72487886979999999999967947899999999999999998717997899999999999986676339
|
| >d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Di-heme elbow motif domain: Cytochrome c nitrite reductase species: Wolinella succinogenes [TaxId: 844]
Probab=100.00 E-value=0 Score=35615.96 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~w~~~yP~qy~~~~~t~e~~~~~~~l~~~P~l~~l~aGy~f~~~y~~~RGH~y~~~D~~~t~R~~ 80 (471)
T d1fs7a_ 1 KTAHSQGIEGKAMSEEWARYYPRQFDSWKKTKESDNITDMLKEKPALVVAWAGYPFSKDYNAPRGHYYALQDNINTLRTG 80 (471)
T ss_dssp CCTTTTCCTTTTSGGGGTTTCHHHHHHHHGGGGCCCCCBHHHHCTHHHHHTTTSGGGTCCBCCCCGGGHHHHHHHSGGGC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 96101132461168999776669999997403578764355418038887386534021167677615312376410357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~g~~p~sC~~ChS~~~~~~~~~~G~~~~~~~~~~~~~~~i~~~IgC~~CH~p~s~~lr~~rp~~~~a~~~~g~~ 160 (471)
T d1fs7a_ 81 APVDGKTGPLPSACWTCKSPDVPRIIEQDGELEYFTGKWAKYGDEIVNTIGCYNCHDDKSAELKSKVPYLDRGLSAAGFK 160 (471)
T ss_dssp CCSSTTCSSSBGGGGTTTCTHHHHHHHHHCHHHHTBSBGGGGTTTCCCCSCHHHHBCTTTCCBCCCCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHCCCCCCCCCEECCHHHHHHHHHCCCC
T ss_conf 77765569988876467997624899851742223587888730689987254539998745132356478999854887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~t~~~~rs~vCaQCHvey~~~~~~~~~~~~~~~~~~~~~~p~~~G~~~e~~~~yyd~~~f~d~~h~~sg~~~~kaq 240 (471)
T d1fs7a_ 161 TFAESTHQEKRSLVCAQCHVEYYFKKTEWKDDKGVDKTAMVVTLPWSKGISTEQMEAYYDEINFADWTHGISKTPMLKAQ 240 (471)
T ss_dssp CTTTSCHHHHHHHHHHTTSSCCEEEEEEEECTTCCEEEEEEEECCCTTCSSHHHHHHHHHHTTCCSEECTTTCCEECCCC
T ss_pred CCCCCCHHHHHCCHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 61000656664216776236223157766677544466655457875788888999982578877775467677721236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Hpe~e~~~~s~H~~~GvsC~dCHMP~~~~~g~~~tdH~v~sP~~~~~~aC~~CH~ds~e~l~~~v~~~~~~~~~~~~~~~ 320 (471)
T d1fs7a_ 241 HPDWELYKTGIHGQKGVSCADCHMPYTQEGAVKYSDHKVGNPLDNMDKSCMNCHRESEQKLKDIVKQKFERKEFLQDIAF 320 (471)
T ss_dssp CCHHHHHHHSHHHHTTCCHHHHHSCEEEETTEEEECCCCSCGGGGHHHHTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85300014575656898445412531036885533477778333330551202775499999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~l~~a~~~~~~a~~~g~~~~~~~~a~~~~r~Aq~~wd~~~ae~s~gfHnP~~a~r~L~~s~~~a~~a~~~l~~~l~~~~ 400 (471)
T d1fs7a_ 321 DNIGKAHLETGKAMELGATDAELKEIRTHIRHAQWRADMAIAGHGSFFHAPEEVLRLLASGNEEAQKARIKLVKVLAKYG 400 (471)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998759998999999999899999999987258755668899999999899999999999999988636
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~~~~~d~~~k~~a~~~~g~~~~~~~~~k~~f~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T d1fs7a_ 401 AIDYVAPDFETKEKAQKLAKVDMEAFIAEKLKFKQTLEQEWKKQAIAKGRLNPESLKGVDEKSSYYDKTKK 471 (471)
T ss_dssp CTTCCCCCCCSHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHHHHTSCCGGGGTTTTSBCSSCBCSCC
T ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 98876688426999999809982221367999998751545999997599984443214543134554049
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=35615.89 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~p~~~~~~~~~~~g~~~~~si~el~~~IP~~~~~~~~l~LP~~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~hy~P~ 80 (471)
T d1wyub1 1 SFPLIFERSRKGRRGLKLVKAVPKAEDLIPKEHLREVPPRLPEVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPK 80 (471)
T ss_dssp CCCCHHHHCCTTCCCCCCCSSCCCHHHHSCGGGBCSSCCCCCCCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCH
T ss_pred CCCCEECCCCCCCCCCCCCCCCHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99843025767876467777525656448998871898999998999999999999957778563515784526746810
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~ 160 (471)
T d1wyub1 81 LHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLV 160 (471)
T ss_dssp HHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEE
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 21047888755289998788899999999999999999587763556621778999999888877653066555544567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~ 240 (471)
T d1wyub1 161 PDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGA 240 (471)
T ss_dssp ETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGG
T ss_pred CCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 75445410112201342121123422112110245554302444300003787555430013567787750665202233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~act 320 (471)
T d1wyub1 241 NLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFY 320 (471)
T ss_dssp GGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTT
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 13555301256764566313553433356655665656401111344203787630378733344688754455200114
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 nqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~ff~EFvv~~~~~~~~~~i~k~L~~~G~~~ 400 (471)
T d1wyub1 321 GNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHP 400 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 41999999999999718156778799999999999998754593205676502677432788998999999998749888
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~~~~~~ap~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T d1wyub1 401 PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKEWLENAPYSTPVRRLDELRANKHPKLTYFD 471 (471)
T ss_dssp CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCHHHHHTCCCSSSSCSBCHHHHHHSCBCSSSC
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 74567677899699940788999999999999999997347789739867887765543354087224679
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=0 Score=35546.46 Aligned_cols=1 Identities=0% Similarity=-2.387 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~~~~~~l~~~D~ei~~~i~~e~~rq~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~ 80 (470)
T d1rv3a_ 1 WSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELET 80 (470)
T ss_dssp CTTHHHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 95467888605866699999999999999875916865777679999998546011646588998544578603999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v 160 (470)
T d1rv3a_ 81 LCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 160 (470)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred HHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 99999999858875432121125579638999999752899868630445577645554356777542451467657777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~t 240 (470)
T d1rv3a_ 161 NPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTT 240 (470)
T ss_dssp CTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEE
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEECHHHCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCHHHEEEEEEEE
T ss_conf 50467644999999987407654760355515667789998777506976980221022310045569823402356644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 THKtlrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~N 320 (470)
T d1rv3a_ 241 THKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVAN 320 (470)
T ss_dssp SSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 10220688633899714423355311422579999997534386643330056778999999986286889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 Ak~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~ 400 (470)
T d1rv3a_ 321 CRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLL 400 (470)
T ss_dssp HHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCC
T ss_pred HHHHHHHHHHCCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEECCHHHHHCCCC
T ss_conf 99999999967966415988775488862234885999999999819187888488999999998047367899858998
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 e~dm~~iA~~I~~~l~~~~~~~~~~g~~~~~~ef~~~~~~~~~~~~~i~~lr~eV~~l~~~FPlPg~~~~ 470 (470)
T d1rv3a_ 401 EKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLPGF 470 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTSCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8999999999999999987531001311357899987521632089999999999999980999999999
|
| >d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35546.16 Aligned_cols=1 Identities=0% Similarity=-0.394 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~D~si~i~~c~~~~rEvE~l~~~I~~~l~~~~~~~~~DIaVl~r~~~~Y~~~I~~vF~ 80 (470)
T d1w36c2 1 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG 80 (470)
T ss_dssp CCCCCCSHHHHHCCTTSEECCTTCCSSEEEEESSHHHHHHHHHHHHHHHHHHSTTCCGGGEEEEESCHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 94124265541001377888999998899979986999999999999999778597905078885976887999999981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~IPy~i~~~~~~~~~p~i~~ll~lL~l~~~~~~~~~l~~lL~~p~~~~~~~i~~~~~~~l~~~~~~~~i~~~~~ 160 (470)
T d1w36c2 81 SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGID 160 (470)
T ss_dssp CCSSTTCCCCEECSEETGGGCHHHHHHHHHTTGGGCCCCHHHHHHHTTSHHHHHHTTCCHHHHHHHHHHHHHHTCCSCSC
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 54435787869858841221799999999999760899818999986871531025898779999999999845432467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~s~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 240 (470)
T d1w36c2 161 DDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 240 (470)
T ss_dssp HHHHHHTTCCCCSSSSHHHHHHHHHHHHSSCSTTCCSSSCCCCTTSCSSTHHHHHHHHHHHHHHHHHHHHTSSCEEHHHH
T ss_pred HHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 88787602310101249988765433210001345553333465543357999999999999999999987344779999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~d~V~v~tih~a 320 (470)
T d1w36c2 241 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPM 320 (470)
T ss_dssp TTHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHTCCCSEECHHHHHHHHHHHHHHCEECTTTTSSSCEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHH
T ss_conf 99999888887410034567899999999999999997511331369999999985432100244575678377331532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 kglef~vVfl~Gl~eg~fP~~~~~~~~~~~~~~~~~~~~~~~~eer~lfy~altrA~~~L~lSy~~~~~~~g~~~~PS~~ 400 (470)
T d1w36c2 321 RSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 400 (470)
T ss_dssp CCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBCSSSCCBCCBCHH
T ss_pred CCCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCHH
T ss_conf 48888889999833761205556100002788776066112478999999999844404999982465668797488789
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 i~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s~~~~~~~~a~~~~~~~ 470 (470)
T d1w36c2 401 VQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAH 470 (470)
T ss_dssp HHHHHHHHHTTEECSSCSSSCHHHHHHHHHHHHCCBCCSSTTSGGGSSSSTTCCSCGGGHHHHTTCCCCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999997615643223566610123443010007888677643898655686566768633010059
|
| >d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35545.06 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~D~si~i~~c~~~~rEvE~l~~~I~~~l~~~~~~~~~DIaVl~r~~~~Y~~~I~~vF~ 80 (470)
T d1w36c2 1 RAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFG 80 (470)
T ss_dssp CCCCCCSHHHHHCCTTSEECCTTCCSSEEEEESSHHHHHHHHHHHHHHHHHHSTTCCGGGEEEEESCHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 94124265541001377888999998899979986999999999999999778597905078885976887999999981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~IPy~i~~~~~~~~~p~i~~ll~lL~l~~~~~~~~~l~~lL~~p~~~~~~~i~~~~~~~l~~~~~~~~i~~~~~ 160 (470)
T d1w36c2 81 SAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGID 160 (470)
T ss_dssp CCSSTTCCCCEECSEETGGGCHHHHHHHHHTTGGGCCCCHHHHHHHTTSHHHHHHTTCCHHHHHHHHHHHHHHTCCSCSC
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 54435787869858841221799999999999760899818999986871531025898779999999999845432467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~s~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 240 (470)
T d1w36c2 161 DDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEW 240 (470)
T ss_dssp HHHHHHTTCCCCSSSSHHHHHHHHHHHHSSCSTTCCSSSCCCCTTSCSSTHHHHHHHHHHHHHHHHHHHHTSSCEEHHHH
T ss_pred HHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 88787602310101249988765433210001345553333465543357999999999999999999987344779999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~d~V~v~tih~a 320 (470)
T d1w36c2 241 LPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPM 320 (470)
T ss_dssp TTHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHHHHHHTCCCSEECHHHHHHHHHHHHHHCEECTTTTSSSCEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHH
T ss_conf 99999888887410034567899999999999999997511331369999999985432100244575678377331532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 kglef~vVfl~Gl~eg~fP~~~~~~~~~~~~~~~~~~~~~~~~eer~lfy~altrA~~~L~lSy~~~~~~~g~~~~PS~~ 400 (470)
T d1w36c2 321 RSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVL 400 (470)
T ss_dssp CCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBCSSSCCBCCBCHH
T ss_pred CCCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCHH
T ss_conf 48888889999833761205556100002788776066112478999999999844404999982465668797488789
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 i~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s~~~~~~~~a~~~~~~~ 470 (470)
T d1w36c2 401 VQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAH 470 (470)
T ss_dssp HHHHHHHHHTTEECSSCSSSCHHHHHHHHHHHHCCBCCSSTTSGGGSSSSTTCCSCGGGHHHHTTCCCCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999997615643223566610123443010007888677643898655686566768633010059
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=0 Score=35543.90 Aligned_cols=1 Identities=0% Similarity=-2.421 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~l~~~D~ei~~~i~~e~~rq~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~ 80 (470)
T d1rv3a_ 1 WSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELET 80 (470)
T ss_dssp CTTHHHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 95467888605866699999999999999875916865777679999998546011646588998544578603999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v 160 (470)
T d1rv3a_ 81 LCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 160 (470)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred HHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 99999999858875432121125579638999999752899868630445577645554356777542451467657777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~t 240 (470)
T d1rv3a_ 161 NPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTT 240 (470)
T ss_dssp CTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEE
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEECHHHCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCHHHEEEEEEEE
T ss_conf 50467644999999987407654760355515667789998777506976980221022310045569823402356644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 THKtlrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~N 320 (470)
T d1rv3a_ 241 THKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVAN 320 (470)
T ss_dssp SSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 10220688633899714423355311422579999997534386643330056778999999986286889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 Ak~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~alTtrG~~ 400 (470)
T d1rv3a_ 321 CRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLL 400 (470)
T ss_dssp HHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCC
T ss_pred HHHHHHHHHHCCCEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEECCHHHHHCCCC
T ss_conf 99999999967966415988775488862234885999999999819187888488999999998047367899858998
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 e~dm~~iA~~I~~~l~~~~~~~~~~g~~~~~~ef~~~~~~~~~~~~~i~~lr~eV~~l~~~FPlPg~~~~ 470 (470)
T d1rv3a_ 401 EKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLPGF 470 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTSCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8999999999999999987531001311357899987521632089999999999999980999999999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=35540.56 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~t~~~~~~~~~~~~~~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~ 80 (470)
T d2bgra1 1 SRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEY 80 (470)
T ss_dssp CCEECCHHHHHHTCSCCCCCCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEE
T ss_pred CCCCEEHHHHHCCCEECCCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEE
T ss_conf 99817767830781022565789689997999759949999889997899970156443167654059989889799997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~ 160 (470)
T d2bgra1 81 NYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (470)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf 77100010467349999898885131246874231010146764135751464137988999465321014777405354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~ 240 (470)
T d2bgra1 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (470)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCS
T ss_pred CCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 32011210047765307999987220268637767069987660477788713540366545468862579999888614
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~ 320 (470)
T d2bgra1 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR 320 (470)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCC
T ss_conf 55203322478633478986677888768783347873046881599999961888947899987514662143353135
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g 400 (470)
T d2bgra1 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSD 400 (470)
T ss_dssp CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTC
T ss_pred CCCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCEEEEEEEECCC
T ss_conf 77724542378847987436757645999526873045116980487878977999999995689983517999998889
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n~~l~~~l~~~~ 470 (470)
T d2bgra1 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQ 470 (470)
T ss_dssp TTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECCHHHHHHHTTEE
T ss_pred CCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHCC
T ss_conf 9860570354358889879999998999999983289998199999899989999806399999997649
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=35538.73 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~t~~~~~~~~~~~~~~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~ 80 (470)
T d2bgra1 1 SRKTYTLTDYLKNTYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEY 80 (470)
T ss_dssp CCEECCHHHHHHTCSCCCCCCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEE
T ss_pred CCCCEEHHHHHCCCEECCCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEE
T ss_conf 99817767830781022565789689997999759949999889997899970156443167654059989889799997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~ 160 (470)
T d2bgra1 81 NYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (470)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf 77100010467349999898885131246874231010146764135751464137988999465321014777405354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~ 240 (470)
T d2bgra1 161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS 240 (470)
T ss_dssp CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCS
T ss_pred CCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 32011210047765307999987220268637767069987660477788713540366545468862579999888614
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~ 320 (470)
T d2bgra1 241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR 320 (470)
T ss_dssp SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCC
T ss_conf 55203322478633478986677888768783347873046881599999961888947899987514662143353135
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g 400 (470)
T d2bgra1 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSD 400 (470)
T ss_dssp CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTC
T ss_pred CCCCEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCEEEEEEEECCC
T ss_conf 77724542378847987436757645999526873045116980487878977999999995689983517999998889
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n~~l~~~l~~~~ 470 (470)
T d2bgra1 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQ 470 (470)
T ss_dssp TTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECCHHHHHHHTTEE
T ss_pred CCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHCC
T ss_conf 9860570354358889879999998999999983289998199999899989999806399999997649
|
| >d2iqha1 e.75.1.1 (A:21-489) Nucleocapsid protein {Influenza A virus [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Flu NP-like superfamily: flu NP-like family: Flu NP-like domain: Nucleocapsid protein species: Influenza A virus [TaxId: 11320]
Probab=100.00 E-value=0 Score=35475.17 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~tei~~sv~~mv~~~g~fYiqmc~e~gLnd~E~~liqN~iaIEr~vl~a~Dekr~~~~~e~~~a~~d~~ktGg~~ykr~ 80 (469)
T d2iqha1 1 NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRV 80 (469)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTTSBHHHHHHHHHHHHHHTC-------------------CEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
T ss_conf 92678899988877777899999999388817888885148999999998505668888743134799322587028831
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~il~~keeI~~i~kq~n~g~da~~gL~h~mi~hSnlnd~~yQR~ral~R~g~dp~m~sl~qGstlprRsga~g 160 (469)
T d2iqha1 81 DGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 160 (469)
T ss_dssp SSSEEEEEEECCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCGGGGGGCTTTTSCTTSCHHH
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHH
T ss_conf 78401242220499999999984155400046521000131266899998888987089888865532688775233334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~a~kGiGtmV~e~ir~IkRgi~dr~~~Rg~~~~ra~~ayek~~~~lkgk~~~~aqra~~dqv~~sRnpg~aeiEdL~~lA 240 (469)
T d2iqha1 161 AAVKGVGTMVMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLA 240 (469)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHC----------CTHHHHHHHHHHHHHHHCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 32111667799999998742232230047873577899999997467735679999999998733698732178999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 rsalilr~sVa~K~~lP~c~y~~a~~sg~dfE~~~ysmVGi~~f~l~~~sqi~Siir~~e~~~~KsQl~~MAC~~aAfED 320 (469)
T d2iqha1 241 RSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFED 320 (469)
T ss_dssp HHTTTSCCCCCCCCCCCHHHHHHHHHTTCCHHHHCCCSSSHHHHHHTTSCCCEEEECTTCCHHHHHHHHHHHHHTCSSSB
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHCCEEEEEECHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87874051002332026898877876136431226017600467764367615752588883656684999873345534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 lrv~S~i~gt~~~pR~~l~~rg~~i~s~E~vetm~S~~l~lrsr~wa~~tRsggntn~~r~~~gQIS~qp~FsVqR~i~~ 400 (469)
T d2iqha1 321 LRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTNQQRASSGQISIQPTFSVQRNLPF 400 (469)
T ss_dssp HHHHHHHHSSCCCCSTTCCCSCSSCCTTSCSTTCEEEECCCCCSCBCCBCCCCCCC-----CCSCSBCCCCBCCCEECCB
T ss_pred HHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCC
T ss_conf 56888760675430454014656543412300110055777877777776415664556666660211430687247864
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~~~i~~~~t~n~egr~sdmrte~I~mm~~ak~e~~~F~Gr~~f~lsD~k~tNPi~p~f~~~~~~~~~~ 469 (469)
T d2iqha1 401 DRPTIMAAFTGNTEGRTSDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPSFDMSNEGSYFF 469 (469)
T ss_dssp CHHHHTTC---------CCHHHHHHHHHHHCCTTCEESTTCCBBCSSCCSSCSCBCCCCCEEECCSBCC
T ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 199999996066547775317889998741574333113654556674123699889844456677569
|
| >d2iqha1 e.75.1.1 (A:21-489) Nucleocapsid protein {Influenza A virus [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Flu NP-like superfamily: flu NP-like family: Flu NP-like domain: Nucleocapsid protein species: Influenza A virus [TaxId: 11320]
Probab=100.00 E-value=0 Score=35472.62 Aligned_cols=1 Identities=0% Similarity=-1.059 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~tei~~sv~~mv~~~g~fYiqmc~e~gLnd~E~~liqN~iaIEr~vl~a~Dekr~~~~~e~~~a~~d~~ktGg~~ykr~ 80 (469)
T d2iqha1 1 NATEIRASVGKMIDGIGRFYIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRV 80 (469)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTTSBHHHHHHHHHHHHHHTC-------------------CEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC
T ss_conf 92678899988877777899999999388817888885148999999998505668888743134799322587028831
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~il~~keeI~~i~kq~n~g~da~~gL~h~mi~hSnlnd~~yQR~ral~R~g~dp~m~sl~qGstlprRsga~g 160 (469)
T d2iqha1 81 DGKWRRELILYDKEEIRRIWRQANNGDDATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAG 160 (469)
T ss_dssp SSSEEEEEEECCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCGGGGGGCTTTTSCTTSCHHH
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHH
T ss_conf 78401242220499999999984155400046521000131266899998888987089888865532688775233334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~a~kGiGtmV~e~ir~IkRgi~dr~~~Rg~~~~ra~~ayek~~~~lkgk~~~~aqra~~dqv~~sRnpg~aeiEdL~~lA 240 (469)
T d2iqha1 161 AAVKGVGTMVMELIRMIKRGINDRNFWRGENGRRTRIAYERMCNILKGKFQTAAQRTMVDQVRESRNPGNAEFEDLIFLA 240 (469)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHC----------CTHHHHHHHHHHHHHHHCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 32111667799999998742232230047873577899999997467735679999999998733698732178999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 rsalilr~sVa~K~~lP~c~y~~a~~sg~dfE~~~ysmVGi~~f~l~~~sqi~Siir~~e~~~~KsQl~~MAC~~aAfED 320 (469)
T d2iqha1 241 RSALILRGSVAHKSCLPACVYGSAVASGYDFEREGYSLVGIDPFRLLQNSQVYSLIRPNENPAHKSQLVWMACHSAAFED 320 (469)
T ss_dssp HHTTTSCCCCCCCCCCCHHHHHHHHHTTCCHHHHCCCSSSHHHHHHTTSCCCEEEECTTCCHHHHHHHHHHHHHTCSSSB
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHCCEEEEEECHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87874051002332026898877876136431226017600467764367615752588883656684999873345534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 lrv~S~i~gt~~~pR~~l~~rg~~i~s~E~vetm~S~~l~lrsr~wa~~tRsggntn~~r~~~gQIS~qp~FsVqR~i~~ 400 (469)
T d2iqha1 321 LRVSSFIRGTKVVPRGKLSTRGVQIASNENMETMESSTLELRSRYWAIRTRSGGNTNQQRASSGQISIQPTFSVQRNLPF 400 (469)
T ss_dssp HHHHHHHHSSCCCCSTTCCCSCSSCCTTSCSTTCEEEECCCCCSCBCCBCCCCCCC-----CCSCSBCCCCBCCCEECCB
T ss_pred HHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCC
T ss_conf 56888760675430454014656543412300110055777877777776415664556666660211430687247864
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~~i~~~~t~n~egr~sdmrte~I~mm~~ak~e~~~F~Gr~~f~lsD~k~tNPi~p~f~~~~~~~~~~ 469 (469)
T d2iqha1 401 DRPTIMAAFTGNTEGRTSDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPSFDMSNEGSYFF 469 (469)
T ss_dssp CHHHHTTC---------CCHHHHHHHHHHHCCTTCEESTTCCBBCSSCCSSCSCBCCCCCEEECCSBCC
T ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 199999996066547775317889998741574333113654556674123699889844456677569
|
| >d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit, PAPL {Vaccinia virus [TaxId: 10245]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Poly(A) polymerase catalytic subunit-like superfamily: Poly(A) polymerase catalytic subunit-like family: Poxvirus poly(A) polymerase catalytic subunit-like domain: Poly(A) polymerase catalytic subunit, PAPL species: Vaccinia virus [TaxId: 10245]
Probab=100.00 E-value=0 Score=35399.71 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~i~~YLgr~ps~~ey~~lk~Q~r~i~~I~~Fnkd~Fisl~~knk~rff~d~~~s~~eIk~RI~~YFsKQ~~~~ki 80 (468)
T d2ga9d1 1 NITLKIIETYLGRVPSVNEYHMLKSQARNIQKITVFNKDIFVSLVKKNKKRFFSDVNTSASEIKDRILSYFSKQTQTYNI 80 (468)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHGGGHHHHHHHHHSCHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHTTGGGGCCCH
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 90699999971899980589999999987899983369999999998667667752899899999999997405403332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 G~i~tIiElQ~llVtt~t~~lGvLTt~~p~~~ss~~~~d~~s~~~ia~~~l~s~nV~~~~~~k~mgRhnvSdLV~~V~kL 160 (468)
T d2ga9d1 81 GKLFTIIELQSVLVTTYTDILGVLTIKAPNVISSKISYNVTSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKL 160 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGC------------CGGGTHHHHHHHHHHHCCCC-----------CCTHHHHHHHH
T ss_pred HHHHEEEEEHEEEEEHHHHHHEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 00021304340100312100224521577641011243215499999999987287667766646777538899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 meEyLrrhNk~CicYGSYSlhlLNp~IeYgDIDilQTNar~fLInlafLI~FitG~~vvLlkVPyLknyivlkdee~~hI 240 (468)
T d2ga9d1 161 MEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQTNSRTFLIDLAFLIKFITGNNIILSKIPYLRNYMVIKDENDNHI 240 (468)
T ss_dssp HHHHHHHCTTTEEEESHHHHHTTCTTCCCSSCEEEESCHHHHHHHHHHHHHHHHCCCCEEEECTTSTTEEEEECTTSCEE
T ss_pred HHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCEE
T ss_conf 99999860886489702466514887644776234306388999999999523275389997521125578983589878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 iDsfnirq~tm~~IPKilIdNIYivDP~~QLln~~KMfSQidRledL~~~~ek~~~R~~TLLeY~r~~~~i~~~~~~~~m 320 (468)
T d2ga9d1 241 IDSFNIRQDTMNVVPKIFIDNIYIVDPTFQLLNMIKMFSQIDRLEDLSKDPEKFNARMATMLEYVRYTHGIVFDGKRNNM 320 (468)
T ss_dssp EEEEECCHHHHHHSCEEEETTEEEECHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSCCCSC
T ss_pred EEECCCCHHHHHHCCHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98414568888635164176369976799999998876667679999867999999999999999986067557777788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 p~~~~~d~~~Rii~vdt~~y~~~~kc~vylDe~~L~~~Il~l~~d~~vDFe~VsNS~fli~~~~lYtyFSNT~Ll~~~~~ 400 (468)
T d2ga9d1 321 PMKCIIDENNRIVTVTTKDYFSFKKCLVYLDENVLSSDILDLNADTSCDFESVTNSVYLIHDNIMYTYFSNTILLSDKGK 400 (468)
T ss_dssp SCCEEEETTTTEEEEECTTTSSSSEEEEESCHHHHHHHHHHTTCCCCEECGGGTTSEEEEETTEEEEECCSCCEEEETTE
T ss_pred CCCCCCCCCCEEEEEECHHCCCHHEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEECCEEEECCCCC
T ss_conf 55543576663899850001670208999450888989870696300233303563478888888998503188569997
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 iH~is~ra~saHil~y~~lt~~~~~~~l~dllnSL~~~ek~pi~~vi~RdKK~G~HgiidIekdii~~ 468 (468)
T d2ga9d1 401 VHEISARGLCAHILLYQMLTSGEYKQCLSDLLNSMMNRDKIPIYSHTERDKKPGRHGFINIEKDIIVF 468 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHTTSSCCCCCCCEECCCCCCCCCCEEEETTTTEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEECCCEEEC
T ss_conf 46555777899999999995786688999999975164655415632345667864179711345529
|
| >d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit, PAPL {Vaccinia virus [TaxId: 10245]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Poly(A) polymerase catalytic subunit-like superfamily: Poly(A) polymerase catalytic subunit-like family: Poxvirus poly(A) polymerase catalytic subunit-like domain: Poly(A) polymerase catalytic subunit, PAPL species: Vaccinia virus [TaxId: 10245]
Probab=100.00 E-value=0 Score=35397.12 Aligned_cols=1 Identities=0% Similarity=-1.059 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~i~~YLgr~ps~~ey~~lk~Q~r~i~~I~~Fnkd~Fisl~~knk~rff~d~~~s~~eIk~RI~~YFsKQ~~~~ki 80 (468)
T d2ga9d1 1 NITLKIIETYLGRVPSVNEYHMLKSQARNIQKITVFNKDIFVSLVKKNKKRFFSDVNTSASEIKDRILSYFSKQTQTYNI 80 (468)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHGGGHHHHHHHHHSCHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHTTGGGGCCCH
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 90699999971899980589999999987899983369999999998667667752899899999999997405403332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 G~i~tIiElQ~llVtt~t~~lGvLTt~~p~~~ss~~~~d~~s~~~ia~~~l~s~nV~~~~~~k~mgRhnvSdLV~~V~kL 160 (468)
T d2ga9d1 81 GKLFTIIELQSVLVTTYTDILGVLTIKAPNVISSKISYNVTSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKL 160 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGC------------CGGGTHHHHHHHHHHHCCCC-----------CCTHHHHHHHH
T ss_pred HHHHEEEEEHEEEEEHHHHHHEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 00021304340100312100224521577641011243215499999999987287667766646777538899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 meEyLrrhNk~CicYGSYSlhlLNp~IeYgDIDilQTNar~fLInlafLI~FitG~~vvLlkVPyLknyivlkdee~~hI 240 (468)
T d2ga9d1 161 MEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQTNSRTFLIDLAFLIKFITGNNIILSKIPYLRNYMVIKDENDNHI 240 (468)
T ss_dssp HHHHHHHCTTTEEEESHHHHHTTCTTCCCSSCEEEESCHHHHHHHHHHHHHHHHCCCCEEEECTTSTTEEEEECTTSCEE
T ss_pred HHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCEE
T ss_conf 99999860886489702466514887644776234306388999999999523275389997521125578983589878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 iDsfnirq~tm~~IPKilIdNIYivDP~~QLln~~KMfSQidRledL~~~~ek~~~R~~TLLeY~r~~~~i~~~~~~~~m 320 (468)
T d2ga9d1 241 IDSFNIRQDTMNVVPKIFIDNIYIVDPTFQLLNMIKMFSQIDRLEDLSKDPEKFNARMATMLEYVRYTHGIVFDGKRNNM 320 (468)
T ss_dssp EEEEECCHHHHHHSCEEEETTEEEECHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSCCCSC
T ss_pred EEECCCCHHHHHHCCHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98414568888635164176369976799999998876667679999867999999999999999986067557777788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 p~~~~~d~~~Rii~vdt~~y~~~~kc~vylDe~~L~~~Il~l~~d~~vDFe~VsNS~fli~~~~lYtyFSNT~Ll~~~~~ 400 (468)
T d2ga9d1 321 PMKCIIDENNRIVTVTTKDYFSFKKCLVYLDENVLSSDILDLNADTSCDFESVTNSVYLIHDNIMYTYFSNTILLSDKGK 400 (468)
T ss_dssp SCCEEEETTTTEEEEECTTTSSSSEEEEESCHHHHHHHHHHTTCCCCEECGGGTTSEEEEETTEEEEECCSCCEEEETTE
T ss_pred CCCCCCCCCCEEEEEECHHCCCHHEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCEEEEEECCEEEECCCCC
T ss_conf 55543576663899850001670208999450888989870696300233303563478888888998503188569997
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 iH~is~ra~saHil~y~~lt~~~~~~~l~dllnSL~~~ek~pi~~vi~RdKK~G~HgiidIekdii~~ 468 (468)
T d2ga9d1 401 VHEISARGLCAHILLYQMLTSGEYKQCLSDLLNSMMNRDKIPIYSHTERDKKPGRHGFINIEKDIIVF 468 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHTTSSCCCCCCCEECCCCCCCCCCEEEETTTTEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEECCCEEEC
T ss_conf 46555777899999999995786688999999975164655415632345667864179711345529
|
| >d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: 6-phospho-beta-D-galactosidase, PGAL species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=35388.13 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 m~~~fP~~FlwG~atsa~QiEG~~~~~gkg~s~wd~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~yRfSisWsRI 80 (468)
T d1pbga_ 1 MTKTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRI 80 (468)
T ss_dssp CCEECCTTCEEEEECCHHHHCCCTTSTTCCCBHHHHHHHTTCSCCSSSTTCHHHHHHHHHHHHHHTTCCEEEEECCHHHH
T ss_pred CCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHC
T ss_conf 99889999827467718775478088998650000101168988997657634512999999998099979835779985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~P~g~g~~n~~gl~~Y~~~id~l~~~GI~P~VTL~H~dlP~~l~~~GGw~~~~~v~~F~~Ya~~~~~~fgdvk~W~T~NE 160 (468)
T d1pbga_ 81 FPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNGDFLNRENIEHFIDYAAFCFEEFPEVNYWTTFNE 160 (468)
T ss_dssp STTSSSSCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCCBHHHHHTTGGGSTHHHHHHHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 75898985989999999999999983985489982465166676427557989999999999999986698608987357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 P~~~~~~gy~~G~~~P~~~~~~~~~~~~~hn~l~AHa~a~~~~~~~~~~~~ig~~~~~~~~~p~~~~~~~d~~aa~~~~~ 240 (468)
T d1pbga_ 161 IGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDI 240 (468)
T ss_dssp HHHHHHHHHTSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCCEEESSTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHH
T ss_conf 33100234345666873223024577765437888999998887635455421487314478614699899999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~d~~~~G~yp~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~ 320 (468)
T d1pbga_ 241 IHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGE 320 (468)
T ss_dssp HHTHHHHHHHHTSSCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHTTCCCEEEEECSCCEEEECCCCCCBC-------
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEECCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 86477754200787879999999987565078777784125565125774213033422305775368875445677776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~t~~gW~i~P~gl~~~l~~~~~~y~~~~pI~ITENG~~~~d~~~~~~i~D~~Ri~yl~~ 400 (468)
T d1pbga_ 321 KGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQ 400 (468)
T ss_dssp ----CCEETTTEEECCCTTCC-----CCCCTHHHHHHHHHHHHHCTTCCCEEEEECCCCBCCCEETTEECCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 67653333565434588888767888732104999999999984579987799568767777776776478789999999
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 hL~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RFGL~~VD~~t~~R~pK~Sa~~y~~ii~~~~~~ 468 (468)
T d1pbga_ 401 HLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKLAETQVIE 468 (468)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSBCCCBTTTBTTSBCCSEEEETTTTEEEECHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999987999889854562133084340447674089869999621343999999999837999
|
| >d1pbga_ c.1.8.4 (A:) 6-phospho-beta-D-galactosidase, PGAL {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: 6-phospho-beta-D-galactosidase, PGAL species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=35385.49 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~fP~~FlwG~atsa~QiEG~~~~~gkg~s~wd~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~yRfSisWsRI 80 (468)
T d1pbga_ 1 MTKTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRI 80 (468)
T ss_dssp CCEECCTTCEEEEECCHHHHCCCTTSTTCCCBHHHHHHHTTCSCCSSSTTCHHHHHHHHHHHHHHTTCCEEEEECCHHHH
T ss_pred CCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHC
T ss_conf 99889999827467718775478088998650000101168988997657634512999999998099979835779985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~P~g~g~~n~~gl~~Y~~~id~l~~~GI~P~VTL~H~dlP~~l~~~GGw~~~~~v~~F~~Ya~~~~~~fgdvk~W~T~NE 160 (468)
T d1pbga_ 81 FPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSNGDFLNRENIEHFIDYAAFCFEEFPEVNYWTTFNE 160 (468)
T ss_dssp STTSSSSCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCCBHHHHHTTGGGSTHHHHHHHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 75898985989999999999999983985489982465166676427557989999999999999986698608987357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 P~~~~~~gy~~G~~~P~~~~~~~~~~~~~hn~l~AHa~a~~~~~~~~~~~~ig~~~~~~~~~p~~~~~~~d~~aa~~~~~ 240 (468)
T d1pbga_ 161 IGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDI 240 (468)
T ss_dssp HHHHHHHHHTSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCCEEESSTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCHHHHHHHHHHHH
T ss_conf 33100234345666873223024577765437888999998887635455421487314478614699899999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~d~~~~G~yp~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~ 320 (468)
T d1pbga_ 241 IHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGE 320 (468)
T ss_dssp HHTHHHHHHHHTSSCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHTTCCCEEEEECSCCEEEECCCCCCBC-------
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEECCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 86477754200787879999999987565078777784125565125774213033422305775368875445677776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~t~~gW~i~P~gl~~~l~~~~~~y~~~~pI~ITENG~~~~d~~~~~~i~D~~Ri~yl~~ 400 (468)
T d1pbga_ 321 KGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQ 400 (468)
T ss_dssp ----CCEETTTEEECCCTTCC-----CCCCTHHHHHHHHHHHHHCTTCCCEEEEECCCCBCCCEETTEECCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 67653333565434588888767888732104999999999984579987799568767777776776478789999999
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 hL~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RFGL~~VD~~t~~R~pK~Sa~~y~~ii~~~~~~ 468 (468)
T d1pbga_ 401 HLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKLAETQVIE 468 (468)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSBCCCBTTTBTTSBCCSEEEETTTTEEEECHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999987999889854562133084340447674089869999621343999999999837999
|
| >d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease I species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]
Probab=100.00 E-value=0 Score=35313.74 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~fv~~D~ETtG~~~~~d~ii~~~ai~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~~ 80 (467)
T d2qxfa1 1 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 80 (467)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCCHHHHHHH
T ss_conf 97499999989996999890799999999799829747788863589899989889898595999997399999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 i~~~~~~~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~kL~ 160 (467)
T d2qxfa1 81 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 160 (467)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHH
T ss_conf 99998517883899945024489999999873664211102445431024555420023577502321011122065499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~la~~~gi~~~~aH~Al~D~~~t~~l~~~i~~~~~~~~~~~l~~~~K~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (467)
T d2qxfa1 161 HLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 240 (467)
T ss_dssp HHHHHTTCCCC---CTTHHHHHHHHHHHHHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 99987387754324425777899999987666668999999984058889988513224314675100102566431013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~p~~~n~~i~~dL~~dp~~~l~l~~~el~~~l~~~~~~~~~~~~~~ir~i~~nk~p~i~~~~~~~~~~~~~l~~~~ 320 (467)
T d2qxfa1 241 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINR 320 (467)
T ss_dssp EEEECSSCTTEEEEEETTSCCHHHHHCC-------------------CCCEEEEETTSCCEEEEGGGSCHHHHHHHTCCH
T ss_pred CCCCCCCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 45567765554043202102165643108899999843443102357765278641678655743213511476766789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~r~~~i~~n~~~~~~~~~~~~~~~~~~~~~~~e~~iY~gf~s~~Dk~~~~~fh~a~~~~k~~~~~~f~D~Rl~~l~ 400 (467)
T d2qxfa1 321 QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 400 (467)
T ss_dssp HHHHHHHHHHHHCTTHHHHC-------------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999865287888776898642144554301088874145535778999999847999998786378776799999
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~R~~~~n~Pe~L~~~~~~~~~~~i~~rl~~~ti~~~~~ei~~l~~~~~~~~ek~~iL~~l~~y~~~l 467 (467)
T d2qxfa1 401 FNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEI 467 (467)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999875922099999999999999884588699999999999866138999999999999999729
|
| >d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Mammalian cytochrome p450 2c9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35313.25 Aligned_cols=1 Identities=0% Similarity=-0.394 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~lPPGP~~~P~lG~~~~l~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dpe~i~~il~~~~~~f~~r~~~~~~~~ 80 (467)
T d1r9oa_ 1 RGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAER 80 (467)
T ss_dssp CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCT
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 99889288997841437886875799999999998499899997890199989999999999838720289875234441
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~g~~l~~~~g~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~g~ 160 (467)
T d1r9oa_ 81 ANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHK 160 (467)
T ss_dssp TTCTTSSTTCCHHHHHHHHHHHHHHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 37897346679728999999988876213411257999999999999999876115621499999999763034330464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~ 240 (467)
T d1r9oa_ 161 RFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFID 240 (467)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHTCCBC-------CCCSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 10010256788999887777775010555410023443038505778998899999999999999987640255300223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Ag~dTTa~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l 320 (467)
T d1r9oa_ 241 CFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHM 320 (467)
T ss_dssp HHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCCGGGGGGC
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 32221112202577656546788999999970134424678999988604943888877535421178888758775330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~yL~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~ 400 (467)
T d1r9oa_ 321 PYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYF 400 (467)
T ss_dssp HHHHHHHHHHHHHHTSSTTCSCEECSSCEEETTEEECTTCEEEECSHHHHTCTTTSSSTTSCCGGGGBCTTSCBCCCTTC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 00002100322001357754444444663465158735973332402203792327381406720137887776899875
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~pFg~G~r~C~G~~~A~~e~~~~la~ll~~f~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Pr~~ 467 (467)
T d1r9oa_ 401 MPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPIHH 467 (467)
T ss_dssp CTTCCGGGSCTTHHHHHHHHHHHHHHHHHHEEEEESSCGGGCCCCCBCCSSSCBCCCCCEEEEECCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 1678987588079999999999999999839998798977788865537655159995189980689
|
| >d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=35312.39 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~p~~~~~~~~~~~~~~~~~r~~vk~~F~~aw~~Y~~~a~g~Del~P~s~~~~~~~~~~~~~g~tlvDsLdTL~imgl~~ 80 (467)
T d1nxca_ 1 FLPPVGVENREPADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGMKT 80 (467)
T ss_dssp CCCCSSCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEETTTTEEECCGGGTTCCCHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 98999988889987779999999999999999999986778331446768988887657703006998888899848979
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ef~~a~~~v~~~~~f~~~~~v~vFEt~iR~LGGLlsAy~Ls~d~~~L~kA~~l~~~Ll~aFdtptgiP~~~vn~~~g~~~ 160 (467)
T d1nxca_ 81 EFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGR 160 (467)
T ss_dssp HHHHHHHHHHHHCCCCCSSEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997378777886453210067664677788814877899999999999998617999988845020137677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~lAe~gsl~LEf~~Ls~lTGd~~Y~~~a~r~~~~l~~~~~~~GL~p~~id~~tg~~~~~~~~iGa~~DS~ 240 (467)
T d1nxca_ 161 NWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSF 240 (467)
T ss_dssp CCTTSGGGCEEHHHHTTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCCGGGCCCSEECTTTCCBCSCEECSSTTTHHH
T ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 88866888621344102321288999997888999999999999986058766687134179996457644457663077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 YEYLlK~~il~g~~d~~~~~~~~~a~~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~hL~cF~~Gll~Lg~~~~~~~~~~ 320 (467)
T d1nxca_ 241 YEYLLKAWLMSDKTDLEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADGAPEARAQ 320 (467)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTEEECTTSCEEECEEETTEEECEEETGGGGHHHHHHHTSTTSCTTCHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 78889999864886489999999999999998603898884366546898666210008988867998535456400016
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~la~~l~~~c~~~y~~~~tgl~pe~~~~~~~~~~~~~~~~~~~y~LRPE~IES~fyLyR~TgD~~yre~gw~~f~~i 400 (467)
T d1nxca_ 321 HYLELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEAL 400 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCCSEEESSTTCSSBCCSGGGCCBCSCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 89999999999999999961420388714505877665311476565677204999999997059889999999999999
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~~~~~~~G~a~i~dV~~~~~~~~D~meSF~laETLKYlYLlFsd~~~i~ld~~VfnTEaHp~~i~~ 467 (467)
T d1nxca_ 401 ESHCRVNGGYSGLRDVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPILR 467 (467)
T ss_dssp HHHTEETTEECCBSCTTSSSCCBCCCBCHHHHHTHHHHHHHHTSCTTSSCTTTEEECTTSCEEECCC
T ss_pred HHHHCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 9987167665301022578998788764689999999999865898767736878757887667889
|
| >d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Mammalian cytochrome p450 2c9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35311.80 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~lPPGP~~~P~lG~~~~l~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dpe~i~~il~~~~~~f~~r~~~~~~~~ 80 (467)
T d1r9oa_ 1 RGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAER 80 (467)
T ss_dssp CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCT
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 99889288997841437886875799999999998499899997890199989999999999838720289875234441
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~g~~l~~~~g~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~g~ 160 (467)
T d1r9oa_ 81 ANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHK 160 (467)
T ss_dssp TTCTTSSTTCCHHHHHHHHHHHHHHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 37897346679728999999988876213411257999999999999999876115621499999999763034330464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~ 240 (467)
T d1r9oa_ 161 RFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFID 240 (467)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHTCCBC-------CCCSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 10010256788999887777775010555410023443038505778998899999999999999987640255300223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Ag~dTTa~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~l 320 (467)
T d1r9oa_ 241 CFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHM 320 (467)
T ss_dssp HHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCCGGGGGGC
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 32221112202577656546788999999970134424678999988604943888877535421178888758775330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~yL~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~ 400 (467)
T d1r9oa_ 321 PYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYF 400 (467)
T ss_dssp HHHHHHHHHHHHHHTSSTTCSCEECSSCEEETTEEECTTCEEEECSHHHHTCTTTSSSTTSCCGGGGBCTTSCBCCCTTC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 00002100322001357754444444663465158735973332402203792327381406720137887776899875
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~pFg~G~r~C~G~~~A~~e~~~~la~ll~~f~~e~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Pr~~ 467 (467)
T d1r9oa_ 401 MPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPIHH 467 (467)
T ss_dssp CTTCCGGGSCTTHHHHHHHHHHHHHHHHHHEEEEESSCGGGCCCCCBCCSSSCBCCCCCEEEEECCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 1678987588079999999999999999839998798977788865537655159995189980689
|
| >d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: Ribokinase-like family: ADP-specific Phosphofructokinase/Glucokinase domain: ADP-dependent glucokinase species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=35310.94 Aligned_cols=1 Identities=0% Similarity=-0.860 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~w~~~y~~a~~~~~~~v~~~~~i~~gyN~NiDai~~~~~~~l~~ll~~~~~~~~~~~~~~~P~~I~s~~d 80 (467)
T d1gc5a_ 1 MKESLKDRIRLWKRLYVNAFENALNAIPNVKGVLLAYNTNIDAIKYLDADDLEKRVTEKGKEKVFEIIENPPEKISSIEE 80 (467)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHGGGCCCEEEESCCEEEEEEECCHHHHHHHHHHHCHHHHHHHHHSCCSSBCSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 92468999999999999999999962135686799986242379965899999999861727666664239845599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 l~~~l~~~mk~G~aaE~~v~~~~l~~~~~~~~~~~~rmGGnAgimAn~La~l~~~~vi~~~p~~~k~q~~lf~~~~i~~P 160 (467)
T d1gc5a_ 81 LLGGILRSIKLGKAMEWFVESEEVRRYLREWGWDELRIGGQAGIMANLLGGVYRIPTIVHVPQNPKLQAELFVDGPIYVP 160 (467)
T ss_dssp HHHHHHHHHHSCCCEEEEBCCHHHHHHHHHHCCSEEEEESHHHHHHHHHHHTSCCCEEECCSCCCHHHHTTSCSSSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCC
T ss_conf 99999998646975365404778999998601032345888999999998548950898467644999987247880265
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~v~~~~~~l~~p~e~~~~e~d~IHlIlEY~~G~~wg~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~dl~vlS 240 (467)
T d1gc5a_ 161 VFEGNKLKLVHPKDAIAEEEELIHYIYEFPRGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIIS 240 (467)
T ss_dssp EECSSCEEEECGGGSCCSCCCCEEEEEEECSSCEETTEECSSCEEEEEECCSSTTTTCCCHHHHHSHHHHHTTCSEEEEC
T ss_pred EECCCCEEECCCHHHCCCCCCCEEEEEEECCCCEECCEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 45388214328544325788745999980799860466657787689967887755735598999998626588789997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 Glqml~~~~~~~~~~~~~l~~~~~~l~~l~~~~i~iH~ElAs~~d~~l~~~i~~ilp~vDSlGmNEqEL~~l~~~lg~~~ 320 (467)
T d1gc5a_ 241 GLQVLKEYYPDGTTYKDVLDRVESHLNILNRYNVKSHFEFAYTANRRVREALVELLPKFTSVGLNEVELASIMEIIGDEE 320 (467)
T ss_dssp CGGGCCSBCTTSCBHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCHHHHHHHHHHGGGCSEEEECHHHHHHHHHHTTCHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 52320034778056999999999999733757885689863211599999999755526617778899998998628975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 l~~~~~~~~v~~v~d~~~~l~~~~~l~RIHvHTl~y~~~~t~~~~~~~~~Al~~~s~~A~~~a~~g~~~~~~~~~~~l~v 400 (467)
T d1gc5a_ 321 LAKEVLEGHIFSVIDAMNVLMDETGIERIHFHTYGYYLALTQYRGEEVRDALLFASLAAAAKAMKGNLERIEQIRDALSV 400 (467)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHCCSEEEEEETTEEEEEESSCCTHHHHHHHHHHHHHHHHHHHSSCCSTTGGGGGGGS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
T ss_conf 33012678889999999999987399889997035143236458288999999998999999860687776664222047
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~PvlVc~~P~~TVGlGD~ISA~glv~ql~~~~~ 467 (467)
T d1gc5a_ 401 PTNERAIVLEEELEKEFTEFENGLIDMVDRQLAFVPTKIVASPKSTVGIGDTISSSAFVSEFGMRKR 467 (467)
T ss_dssp CCCHHHHHHHHHHHHHSEEEETTEEECSSCEEEEEECCCCSSCSCCSSHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 7310121003555313341123546667606999732132887775358556627899999997429
|
| >d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease I species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]
Probab=100.00 E-value=0 Score=35310.51 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~fv~~D~ETtG~~~~~d~ii~~~ai~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~~ 80 (467)
T d2qxfa1 1 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 80 (467)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCCHHHHHHH
T ss_conf 97499999989996999890799999999799829747788863589899989889898595999997399999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 i~~~~~~~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~kL~ 160 (467)
T d2qxfa1 81 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 160 (467)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHH
T ss_conf 99998517883899945024489999999873664211102445431024555420023577502321011122065499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~la~~~gi~~~~aH~Al~D~~~t~~l~~~i~~~~~~~~~~~l~~~~K~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (467)
T d2qxfa1 161 HLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 240 (467)
T ss_dssp HHHHHTTCCCC---CTTHHHHHHHHHHHHHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 99987387754324425777899999987666668999999984058889988513224314675100102566431013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~p~~~n~~i~~dL~~dp~~~l~l~~~el~~~l~~~~~~~~~~~~~~ir~i~~nk~p~i~~~~~~~~~~~~~l~~~~ 320 (467)
T d2qxfa1 241 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINR 320 (467)
T ss_dssp EEEECSSCTTEEEEEETTSCCHHHHHCC-------------------CCCEEEEETTSCCEEEEGGGSCHHHHHHHTCCH
T ss_pred CCCCCCCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 45567765554043202102165643108899999843443102357765278641678655743213511476766789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~r~~~i~~n~~~~~~~~~~~~~~~~~~~~~~~e~~iY~gf~s~~Dk~~~~~fh~a~~~~k~~~~~~f~D~Rl~~l~ 400 (467)
T d2qxfa1 321 QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 400 (467)
T ss_dssp HHHHHHHHHHHHCTTHHHHC-------------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999865287888776898642144554301088874145535778999999847999998786378776799999
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~R~~~~n~Pe~L~~~~~~~~~~~i~~rl~~~ti~~~~~ei~~l~~~~~~~~ek~~iL~~l~~y~~~l 467 (467)
T d2qxfa1 401 FNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYADEI 467 (467)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999875922099999999999999884588699999999999866138999999999999999729
|
| >d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=35310.30 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~p~~~~~~~~~~~~~~~~~r~~vk~~F~~aw~~Y~~~a~g~Del~P~s~~~~~~~~~~~~~g~tlvDsLdTL~imgl~~ 80 (467)
T d1nxca_ 1 FLPPVGVENREPADATIREKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGMKT 80 (467)
T ss_dssp CCCCSSCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEETTTTEEECCGGGTTCCCHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 98999988889987779999999999999999999986778331446768988887657703006998888899848979
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ef~~a~~~v~~~~~f~~~~~v~vFEt~iR~LGGLlsAy~Ls~d~~~L~kA~~l~~~Ll~aFdtptgiP~~~vn~~~g~~~ 160 (467)
T d1nxca_ 81 EFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAFHTPSGIPWALLNMKSGIGR 160 (467)
T ss_dssp HHHHHHHHHHHHCCCCCSSEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSSSSCCCSEEETTTCCEE
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997378777886453210067664677788814877899999999999998617999988845020137677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~lAe~gsl~LEf~~Ls~lTGd~~Y~~~a~r~~~~l~~~~~~~GL~p~~id~~tg~~~~~~~~iGa~~DS~ 240 (467)
T d1nxca_ 161 NWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSF 240 (467)
T ss_dssp CCTTSGGGCEEHHHHTTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCCGGGCCCSEECTTTCCBCSCEECSSTTTHHH
T ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 88866888621344102321288999997888999999999999986058766687134179996457644457663077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 YEYLlK~~il~g~~d~~~~~~~~~a~~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~hL~cF~~Gll~Lg~~~~~~~~~~ 320 (467)
T d1nxca_ 241 YEYLLKAWLMSDKTDLEAKKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADGAPEARAQ 320 (467)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTEEECTTSCEEECEEETTEEECEEETGGGGHHHHHHHTSTTSCTTCHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 78889999864886489999999999999998603898884366546898666210008988867998535456400016
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~la~~l~~~c~~~y~~~~tgl~pe~~~~~~~~~~~~~~~~~~~y~LRPE~IES~fyLyR~TgD~~yre~gw~~f~~i 400 (467)
T d1nxca_ 321 HYLELGAEIARTCHESYNRTYVKLGPEAFRFDGGVEAIATRQNEKYYILRPEVIETYMYMWRLTHDPKYRTWAWEAVEAL 400 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCCSEEESSTTCSSBCCSGGGCCBCSCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 89999999999999999961420388714505877665311476565677204999999997059889999999999999
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~~~~~G~a~i~dV~~~~~~~~D~meSF~laETLKYlYLlFsd~~~i~ld~~VfnTEaHp~~i~~ 467 (467)
T d1nxca_ 401 ESHCRVNGGYSGLRDVYIARESYDDVQQSFFLAETLKYLYLIFSDDDLLPLEHWIFNTEAHPFPILR 467 (467)
T ss_dssp HHHTEETTEECCBSCTTSSSCCBCCCBCHHHHHTHHHHHHHHTSCTTSSCTTTEEECTTSCEEECCC
T ss_pred HHHHCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 9987167665301022578998788764689999999999865898767736878757887667889
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35310.28 Aligned_cols=1 Identities=0% Similarity=-0.195 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~p~p~~~~~v~~i~~~~~~~r~~~~~~~~~n~~~l~~~~~~idl~sd~~t~~~~~~~~a~~~~gd~~Y~~~~~~~~le 80 (467)
T d2v1pa1 1 KHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALA 80 (467)
T ss_dssp CCCCCSSCCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCCTTCSCCCHHHHHHTTSCCCCSSSCHHHHHHH
T ss_pred CCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHH
T ss_conf 98998601445532136699999999997478856788766035410333506668999963256532314794299999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 160 (467)
T d2v1pa1 81 ESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVR 160 (467)
T ss_dssp HHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSC
T ss_pred HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf 99999979987998999889999999998640225966788838997166665418999973995132365455566554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~ 240 (467)
T d2v1pa1 161 YDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE 240 (467)
T ss_dssp CTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCCCCC
T ss_conf 54456779999999976548632120243031403644358999999999999981988998550043130214555544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 320 (467)
T d2v1pa1 241 YKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_dssp GTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 26776032301013558879955777777887526773615665677763104645555730124678899999998487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~ 400 (467)
T d2v1pa1 321 GMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD 400 (467)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 55178999999999999999985287345777654011112312774201000689999999981972000554553445
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~i~~l~~~~e~~~lr~f~~~~~~~ 467 (467)
T d2v1pa1 401 PKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV 467 (467)
T ss_dssp TTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGGCCCEEEEECCSSSHHHHCEEEEC
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHCCCCC
T ss_conf 5567756787664899668888999999999999999999787666852425763112002125359
|
| >d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac {Actinomadura sp. [TaxId: 1989]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: Dac-like domain: D-alanyl-D-alanine carboxypeptidase Dac species: Actinomadura sp. [TaxId: 1989]
Probab=100.00 E-value=0 Score=35312.72 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~L~~~i~~~l~~~~l~~a~~gi~V~d~~tg~~l~~~n~~~~~~PAS~~Kl~Ta~aAL~~LG~d~rf~T~v~~~g~~~ 80 (467)
T d1w79a1 1 RLTELREDIDAILEDPALEGAVSGVVVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALEVLGADHSFGTEVAAESAPG 80 (467)
T ss_dssp CHHHHHHHHHHHTTCGGGTTCEEEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHTCTTCEEEEEEEESSCCC
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 94577999999982725788748999998999999655089986586699999999999986199976888999506446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~GdL~i~G~GDP~L~~~~l~~l~~~l~~~Gi~~I~G~iv~D~s~f~~~~~~~~w~~~d~~~~Y~a~~sal~~~~n~ 160 (467)
T d1w79a1 81 RRGEVQDLYLVGRGDPTLSAEDLDAMAAEVAASGVRTVRGDLYADDTWFDSERLVDDWWPEDEPYAYSAQISALTVAHGE 160 (467)
T ss_dssp TTSEESCEEEEECSCTTCCHHHHHHHHHHHHHTTCCEECSCEEEECTTSCSCCSCTTSCGGGTTBGGGCCCCSSCCEETT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 78611208999458987677789999999997176512375463043345643468654466643345777404321541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~n~n~~~~~~~p~~~g~~~~~~~~p~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~p~~~~~~~~~~~v~~ 240 (467)
T d1w79a1 161 RFDTGVTEVSVTPAAEGEPADVDLGAAEGYAELDNRAVTGAAGSANTLVIDRPVGTNTIAVTGSLPADAAPVTALRTVDE 240 (467)
T ss_dssp TTEESEEEEEEECCSTTSBCEEECGGGTTTSEEEECCEEECTTCCCCCEEECCTTCCEEEEESEEETTSCCEEEEEECSC
T ss_pred CCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEECEEEECCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCEEECCCCH
T ss_conf 01366036999753579841565135556235301022045556651588525787448874211157666300012134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 P~~~~~~~f~~~L~~~Gi~v~g~~~~~~~p~~~~~~~~la~~~S~pL~~il~~m~k~S~N~~AE~L~~~lg~~~~~~~s~ 320 (467)
T d1w79a1 241 PAALAGHLFEEALESNGVTVKGDVGLGGVPADWQDAEVLADHTSAELSEILVPFMKFSNNGHAEMLVKSIGQETAGAGTW 320 (467)
T ss_dssp HHHHHHHHHHHHHHHTTCEECSCEEECCCCSCCTTCEEEEEEEEEEHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCCSH
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 89999999999999659754253111443346677279986064249999999986566799999999998864477513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~l~~~gi~~~~~~l~DGSGLSr~nris~~~l~~lL~~~~~~~~~~~~~~sLPiaG~~~~~vdGTL~~R~~~ 400 (467)
T d1w79a1 321 DAGLVGVEEALSGLGVDTAGLVLNDGSGLSRGNLVTADTVVDLLGQAGSAPWAQTWSASLPVAGESDPFVGGTLANRMRG 400 (467)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCBCSCSSSCSTTCBBCHHHHHHHHHHHHTSTTHHHHHHHSCBTTCSSHHHHGGGTTSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCC
T ss_conf 56899999999864888567377358888854555999999999998859327899973985788677778755565047
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~g~v~aKTGtL~~V~sLaGyv~~~~g~~~Fsi~~N~~~~~~~r~~~d~i~~~l~~~~~~~~p~~ 467 (467)
T d1w79a1 401 TAAEGVVEAKTGTMSGVSALSGYVPGPEGELAFSIVNNGHSGPAPLAVQDAIAVRLAEYAGHQAPEG 467 (467)
T ss_dssp STTTTTCEEECCEETTEEEEEEEECCTTCCEEEEEEEECCSSSCCHHHHHHHHHHHHHHTTCCCCC-
T ss_pred CCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8767749999876479448589999699889999997699823669999999999997308899899
|
| >d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: Ribokinase-like family: ADP-specific Phosphofructokinase/Glucokinase domain: ADP-dependent glucokinase species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=35309.15 Aligned_cols=1 Identities=0% Similarity=-0.993 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~w~~~y~~a~~~~~~~v~~~~~i~~gyN~NiDai~~~~~~~l~~ll~~~~~~~~~~~~~~~P~~I~s~~d 80 (467)
T d1gc5a_ 1 MKESLKDRIRLWKRLYVNAFENALNAIPNVKGVLLAYNTNIDAIKYLDADDLEKRVTEKGKEKVFEIIENPPEKISSIEE 80 (467)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHGGGCCCEEEESCCEEEEEEECCHHHHHHHHHHHCHHHHHHHHHSCCSSBCSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 92468999999999999999999962135686799986242379965899999999861727666664239845599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 l~~~l~~~mk~G~aaE~~v~~~~l~~~~~~~~~~~~rmGGnAgimAn~La~l~~~~vi~~~p~~~k~q~~lf~~~~i~~P 160 (467)
T d1gc5a_ 81 LLGGILRSIKLGKAMEWFVESEEVRRYLREWGWDELRIGGQAGIMANLLGGVYRIPTIVHVPQNPKLQAELFVDGPIYVP 160 (467)
T ss_dssp HHHHHHHHHHSCCCEEEEBCCHHHHHHHHHHCCSEEEEESHHHHHHHHHHHTSCCCEEECCSCCCHHHHTTSCSSSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCC
T ss_conf 99999998646975365404778999998601032345888999999998548950898467644999987247880265
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~v~~~~~~l~~p~e~~~~e~d~IHlIlEY~~G~~wg~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~dl~vlS 240 (467)
T d1gc5a_ 161 VFEGNKLKLVHPKDAIAEEEELIHYIYEFPRGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIIS 240 (467)
T ss_dssp EECSSCEEEECGGGSCCSCCCCEEEEEEECSSCEETTEECSSCEEEEEECCSSTTTTCCCHHHHHSHHHHHTTCSEEEEC
T ss_pred EECCCCEEECCCHHHCCCCCCCEEEEEEECCCCEECCEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 45388214328544325788745999980799860466657787689967887755735598999998626588789997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Glqml~~~~~~~~~~~~~l~~~~~~l~~l~~~~i~iH~ElAs~~d~~l~~~i~~ilp~vDSlGmNEqEL~~l~~~lg~~~ 320 (467)
T d1gc5a_ 241 GLQVLKEYYPDGTTYKDVLDRVESHLNILNRYNVKSHFEFAYTANRRVREALVELLPKFTSVGLNEVELASIMEIIGDEE 320 (467)
T ss_dssp CGGGCCSBCTTSCBHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCHHHHHHHHHHGGGCSEEEECHHHHHHHHHHTTCHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 52320034778056999999999999733757885689863211599999999755526617778899998998628975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~~~~~~~~v~~v~d~~~~l~~~~~l~RIHvHTl~y~~~~t~~~~~~~~~Al~~~s~~A~~~a~~g~~~~~~~~~~~l~v 400 (467)
T d1gc5a_ 321 LAKEVLEGHIFSVIDAMNVLMDETGIERIHFHTYGYYLALTQYRGEEVRDALLFASLAAAAKAMKGNLERIEQIRDALSV 400 (467)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHCCSEEEEEETTEEEEEESSCCTHHHHHHHHHHHHHHHHHHHSSCCSTTGGGGGGGS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
T ss_conf 33012678889999999999987399889997035143236458288999999998999999860687776664222047
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~PvlVc~~P~~TVGlGD~ISA~glv~ql~~~~~ 467 (467)
T d1gc5a_ 401 PTNERAIVLEEELEKEFTEFENGLIDMVDRQLAFVPTKIVASPKSTVGIGDTISSSAFVSEFGMRKR 467 (467)
T ss_dssp CCCHHHHHHHHHHHHHSEEEETTEEECSSCEEEEEECCCCSSCSCCSSHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 7310121003555313341123546667606999732132887775358556627899999997429
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=35307.19 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~p~p~~~~~v~~i~~~~~~~r~~~~~~~~~n~~~l~~~~~~idl~sd~~t~~~~~~~~a~~~~gd~~Y~~~~~~~~le 80 (467)
T d2v1pa1 1 KHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALA 80 (467)
T ss_dssp CCCCCSSCCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCCTTCSCCCHHHHHHTTSCCCCSSSCHHHHHHH
T ss_pred CCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHH
T ss_conf 98998601445532136699999999997478856788766035410333506668999963256532314794299999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 160 (467)
T d2v1pa1 81 ESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVR 160 (467)
T ss_dssp HHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSC
T ss_pred HHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf 99999979987998999889999999998640225966788838997166665418999973995132365455566554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~ 240 (467)
T d2v1pa1 161 YDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE 240 (467)
T ss_dssp CTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCCCCC
T ss_conf 54456779999999976548632120243031403644358999999999999981988998550043130214555544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 320 (467)
T d2v1pa1 241 YKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYD 320 (467)
T ss_dssp GTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 26776032301013558879955777777887526773615665677763104645555730124678899999998487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~ 400 (467)
T d2v1pa1 321 GMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD 400 (467)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 55178999999999999999985287345777654011112312774201000689999999981972000554553445
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~i~~l~~~~e~~~lr~f~~~~~~~ 467 (467)
T d2v1pa1 401 PKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV 467 (467)
T ss_dssp TTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGGCCCEEEEECCSSSHHHHCEEEEC
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHCCCCC
T ss_conf 5567756787664899668888999999999999999999787666852425763112002125359
|
| >d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac {Actinomadura sp. [TaxId: 1989]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: Dac-like domain: D-alanyl-D-alanine carboxypeptidase Dac species: Actinomadura sp. [TaxId: 1989]
Probab=100.00 E-value=0 Score=35309.73 Aligned_cols=1 Identities=0% Similarity=-0.127 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~L~~~i~~~l~~~~l~~a~~gi~V~d~~tg~~l~~~n~~~~~~PAS~~Kl~Ta~aAL~~LG~d~rf~T~v~~~g~~~ 80 (467)
T d1w79a1 1 RLTELREDIDAILEDPALEGAVSGVVVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALEVLGADHSFGTEVAAESAPG 80 (467)
T ss_dssp CHHHHHHHHHHHTTCGGGTTCEEEEEEEETTTCCEEEEESTTCCBCCGGGHHHHHHHHHHHHTCTTCEEEEEEEESSCCC
T ss_pred CHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf 94577999999982725788748999998999999655089986586699999999999986199976888999506446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~GdL~i~G~GDP~L~~~~l~~l~~~l~~~Gi~~I~G~iv~D~s~f~~~~~~~~w~~~d~~~~Y~a~~sal~~~~n~ 160 (467)
T d1w79a1 81 RRGEVQDLYLVGRGDPTLSAEDLDAMAAEVAASGVRTVRGDLYADDTWFDSERLVDDWWPEDEPYAYSAQISALTVAHGE 160 (467)
T ss_dssp TTSEESCEEEEECSCTTCCHHHHHHHHHHHHHTTCCEECSCEEEECTTSCSCCSCTTSCGGGTTBGGGCCCCSSCCEETT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 78611208999458987677789999999997176512375463043345643468654466643345777404321541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~n~n~~~~~~~p~~~g~~~~~~~~p~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~p~~~~~~~~~~~v~~ 240 (467)
T d1w79a1 161 RFDTGVTEVSVTPAAEGEPADVDLGAAEGYAELDNRAVTGAAGSANTLVIDRPVGTNTIAVTGSLPADAAPVTALRTVDE 240 (467)
T ss_dssp TTEESEEEEEEECCSTTSBCEEECGGGTTTSEEEECCEEECTTCCCCCEEECCTTCCEEEEESEEETTSCCEEEEEECSC
T ss_pred CCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEECEEEECCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCEEECCCCH
T ss_conf 01366036999753579841565135556235301022045556651588525787448874211157666300012134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 P~~~~~~~f~~~L~~~Gi~v~g~~~~~~~p~~~~~~~~la~~~S~pL~~il~~m~k~S~N~~AE~L~~~lg~~~~~~~s~ 320 (467)
T d1w79a1 241 PAALAGHLFEEALESNGVTVKGDVGLGGVPADWQDAEVLADHTSAELSEILVPFMKFSNNGHAEMLVKSIGQETAGAGTW 320 (467)
T ss_dssp HHHHHHHHHHHHHHHTTCEECSCEEECCCCSCCTTCEEEEEEEEEEHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCCSH
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 89999999999999659754253111443346677279986064249999999986566799999999998864477513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~l~~~gi~~~~~~l~DGSGLSr~nris~~~l~~lL~~~~~~~~~~~~~~sLPiaG~~~~~vdGTL~~R~~~ 400 (467)
T d1w79a1 321 DAGLVGVEEALSGLGVDTAGLVLNDGSGLSRGNLVTADTVVDLLGQAGSAPWAQTWSASLPVAGESDPFVGGTLANRMRG 400 (467)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCBCSCSSSCSTTCBBCHHHHHHHHHHHHTSTTHHHHHHHSCBTTCSSHHHHGGGTTSSTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCC
T ss_conf 56899999999864888567377358888854555999999999998859327899973985788677778755565047
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~g~v~aKTGtL~~V~sLaGyv~~~~g~~~Fsi~~N~~~~~~~r~~~d~i~~~l~~~~~~~~p~~ 467 (467)
T d1w79a1 401 TAAEGVVEAKTGTMSGVSALSGYVPGPEGELAFSIVNNGHSGPAPLAVQDAIAVRLAEYAGHQAPEG 467 (467)
T ss_dssp STTTTTCEEECCEETTEEEEEEEECCTTCCEEEEEEEECCSSSCCHHHHHHHHHHHHHHTTCCCCC-
T ss_pred CCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8767749999876479448589999699889999997699823669999999999997308899899
|
| >d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Mammalian cytochrome p450 2b4 species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=0 Score=35158.08 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~pPgP~~~P~lG~~~~~~~~~~~~~~~~~~~kyG~vf~~~~~~~~~vvv~~p~~i~~il~~~~~~f~~~~~~~~~~~~ 80 (465)
T d1po5a_ 1 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPI 80 (465)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSC
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHC
T ss_conf 97897999958503488866867899999999985998999978902899899999999997386213898630232110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~~ 160 (465)
T d1po5a_ 81 FQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKR 160 (465)
T ss_dssp CSSCCCCCSSHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 37983366686189999999888765013323789999999999987764115787432899999999999999871886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (465)
T d1po5a_ 161 FDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDV 240 (465)
T ss_dssp CCTTCHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSSCSHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCCSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 33344310124555443100011211101102344554300067888999999999999999999864334444210246
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~Ag~~tta~~l~~~l~~l~~~p~~~~kl~~ei~~~~~~~~~~~~~~~~~lp 320 (465)
T d1po5a_ 241 YLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMP 320 (465)
T ss_dssp HHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCCGGGGGGCH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCE
T ss_conf 77776310356652034899999999998611346223557888877654468889999898770866676321111031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~l~avi~EtlRl~~~~~~~~~~~~~~d~~~~~~~ipkGt~v~~~~~~~~~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~ 400 (465)
T d1po5a_ 321 YTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFM 400 (465)
T ss_dssp HHHHHHHHHHHHHCSSTTCCCEECSSCEEETTEEECTTCEEEECHHHHHTCTTTCSSTTSCCGGGGBCTTSCBCCCTTCC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32014565411034566644214404650467870389789875310245566089957208000379876768998727
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 pFG~G~r~C~G~~~A~~e~~~~~a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~R~ 465 (465)
T d1po5a_ 401 PFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLARH 465 (465)
T ss_dssp TTCCSTTCCTTHHHHHHHHHHHHHHHHHHEEEECSSCGGGCCCCCCSTTSSCCCCCCCBEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCEECCCCCEEEEEECC
T ss_conf 87898768803999999999999999984899708987789775233564513896089999693
|
| >d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Mammalian cytochrome p450 2b4 species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=0 Score=35155.86 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~pPgP~~~P~lG~~~~~~~~~~~~~~~~~~~kyG~vf~~~~~~~~~vvv~~p~~i~~il~~~~~~f~~~~~~~~~~~~ 80 (465)
T d1po5a_ 1 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPI 80 (465)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSC
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCCEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHC
T ss_conf 97897999958503488866867899999999985998999978902899899999999997386213898630232110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~~ 160 (465)
T d1po5a_ 81 FQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKR 160 (465)
T ss_dssp CSSCCCCCSSHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 37983366686189999999888765013323789999999999987764115787432899999999999999871886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (465)
T d1po5a_ 161 FDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNPRDFIDV 240 (465)
T ss_dssp CCTTCHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSSCSHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCCSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 33344310124555443100011211101102344554300067888999999999999999999864334444210246
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~Ag~~tta~~l~~~l~~l~~~p~~~~kl~~ei~~~~~~~~~~~~~~~~~lp 320 (465)
T d1po5a_ 241 YLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMP 320 (465)
T ss_dssp HHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCCGGGGGGCH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCE
T ss_conf 77776310356652034899999999998611346223557888877654468889999898770866676321111031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~l~avi~EtlRl~~~~~~~~~~~~~~d~~~~~~~ipkGt~v~~~~~~~~~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~ 400 (465)
T d1po5a_ 321 YTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFM 400 (465)
T ss_dssp HHHHHHHHHHHHHCSSTTCCCEECSSCEEETTEEECTTCEEEECHHHHHTCTTTCSSTTSCCGGGGBCTTSCBCCCTTCC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32014565411034566644214404650467870389789875310245566089957208000379876768998727
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 pFG~G~r~C~G~~~A~~e~~~~~a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~R~ 465 (465)
T d1po5a_ 401 PFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIRFLARH 465 (465)
T ss_dssp TTCCSTTCCTTHHHHHHHHHHHHHHHHHHEEEECSSCGGGCCCCCCSTTSSCCCCCCCBEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCEECCCCCEEEEEECC
T ss_conf 87898768803999999999999999984899708987789775233564513896089999693
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=100.00 E-value=0 Score=35155.37 Aligned_cols=1 Identities=0% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~p~~~~~ve~~~~~~~~~R~~~l~~~~~n~~~~~~~~~~id~~sd~~t~~~~~~~~a~~~~gd~~y~~~~~~~~l 80 (465)
T d1ax4a_ 1 AKRIVEPFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDL 80 (465)
T ss_dssp CCCCCCSEEEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCSSSCCCEEHHHHHHHHTCCCCSSSCHHHHHH
T ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 98366755032454337778999999999769984457766754532256660543488999875466564568279999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 e~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (465)
T d1ax4a_ 81 KDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYD 160 (465)
T ss_dssp HHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCC
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
T ss_conf 99999997998799899968999999999998898639998708944530341589998769815215555567887779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~ 240 (465)
T d1ax4a_ 161 DWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY 240 (465)
T ss_dssp TTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGG
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCC
T ss_conf 76676599999999875204443211211344447531589999999999999859989997836342100022466543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~ 320 (465)
T d1ax4a_ 241 KNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE 320 (465)
T ss_dssp TTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 45653021131024545047613567665652157515057788763033555445787610667878777655687513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~ 400 (465)
T d1ax4a_ 321 EEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPA 400 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
T ss_conf 99999999999999999986057611478763365211330578764221067899999986495101263323344544
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i~gl~~~~e~~~lr~f~~~~~~~ 465 (465)
T d1ax4a_ 401 TGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLRHFTARLKPI 465 (465)
T ss_dssp TCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTCCCEEEEECCSSCHHHHCEEEEC
T ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67756777782598679878999999999999999999997546861125664353123243309
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35152.94 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 q~~~~tle~~~~~~~~~~~~~~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~ 80 (465)
T d1xfda1 1 QKKKVTVEDLFSEDFKIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYN 80 (465)
T ss_dssp CCCCCCHHHHTCTTTCCCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEES
T ss_pred CCCCEEHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEEC
T ss_conf 98721199972776634798878917984899928996999987899889987276444455321389898886999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred CCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEC
T ss_conf 51004760335289998568845641576677643110024267856999961329999548996589711267660443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 G~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~ 240 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred CCCCHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCE
T ss_conf 66431001230366434897798986899995366661464123445444313345302568889721379983689817
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEE
T ss_conf 89995257676666304566875799389999741003013799707999278778972785173567860574689805
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~ 400 (465)
T d1xfda1 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ 400 (465)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred EEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCE
T ss_conf 77776543166716899831566667886269822699219977898389999999996899982689999778998605
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~N~~l~~~l~~~~~ 465 (465)
T d1xfda1 401 CLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQM 465 (465)
T ss_dssp CSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEECCHHHHHHHHTSCC
T ss_pred EECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCC
T ss_conf 53144678898799999999999999800699984999999999799997387999998986369
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=100.00 E-value=0 Score=35152.07 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~p~~~~~ve~~~~~~~~~R~~~l~~~~~n~~~~~~~~~~id~~sd~~t~~~~~~~~a~~~~gd~~y~~~~~~~~l 80 (465)
T d1ax4a_ 1 AKRIVEPFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDL 80 (465)
T ss_dssp CCCCCCSEEEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCSSSCCCEEHHHHHHHHTCCCCSSSCHHHHHH
T ss_pred CCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 98366755032454337778999999999769984457766754532256660543488999875466564568279999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 e~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (465)
T d1ax4a_ 81 KDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYD 160 (465)
T ss_dssp HHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCC
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCC
T ss_conf 99999997998799899968999999999998898639998708944530341589998769815215555567887779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~ 240 (465)
T d1ax4a_ 161 DWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY 240 (465)
T ss_dssp TTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGG
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCC
T ss_conf 76676599999999875204443211211344447531589999999999999859989997836342100022466543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~ 320 (465)
T d1ax4a_ 241 KNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE 320 (465)
T ss_dssp TTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 45653021131024545047613567665652157515057788763033555445787610667878777655687513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~ 400 (465)
T d1ax4a_ 321 EEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPA 400 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
T ss_conf 99999999999999999986057611478763365211330578764221067899999986495101263323344544
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i~gl~~~~e~~~lr~f~~~~~~~ 465 (465)
T d1ax4a_ 401 TGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLRHFTARLKPI 465 (465)
T ss_dssp TCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTCCCEEEEECCSSCHHHHCEEEEC
T ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67756777782598679878999999999999999999997546861125664353123243309
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35149.45 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 q~~~~tle~~~~~~~~~~~~~~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~ 80 (465)
T d1xfda1 1 QKKKVTVEDLFSEDFKIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYN 80 (465)
T ss_dssp CCCCCCHHHHTCTTTCCCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEES
T ss_pred CCCCEEHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEEC
T ss_conf 98721199972776634798878917984899928996999987899889987276444455321389898886999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred CCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEECCEEEEEECCCCCEEEEECCCCCCEEEC
T ss_conf 51004760335289998568845641576677643110024267856999961329999548996589711267660443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 G~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~ 240 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred CCCCHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCE
T ss_conf 66431001230366434897798986899995366661464123445444313345302568889721379983689817
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCEE
T ss_conf 89995257676666304566875799389999741003013799707999278778972785173567860574689805
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~ 400 (465)
T d1xfda1 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ 400 (465)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred EEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEECCCCCCCE
T ss_conf 77776543166716899831566667886269822699219977898389999999996899982689999778998605
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~N~~l~~~l~~~~~ 465 (465)
T d1xfda1 401 CLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQM 465 (465)
T ss_dssp CSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEECCHHHHHHHHTSCC
T ss_pred EECCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCC
T ss_conf 53144678898799999999999999800699984999999999799997387999998986369
|
| >d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: iota-carrageenase domain: iota-carrageenase species: Alteromonas sp., atcc 43554 [TaxId: 232]
Probab=100.00 E-value=0 Score=35087.84 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~fy~~p~q~~~~~~lv~d~g~n~nDt~dDs~~L~~Ain~~sr~~~GG~l~lp~g~y~l~~I~m~SNVhiev 80 (464)
T d1h80a_ 1 VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRV 80 (464)
T ss_dssp CCCCCCCGGGTCCCCSCCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHTSTTCEEEEECSSEEEECSEECCTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCCEEEEE
T ss_conf 98753346640138631102346211106678866672799999999862478985799727838898776136368997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 E~~~viyPT~~~d~KNhrlF~fg~~n~veN~si~g~G~~FtID~~~n~~kN~~~v~lg~V~nfkIsnf~I~DnkT~~asI 160 (464)
T d1h80a_ 81 ESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASI 160 (464)
T ss_dssp CTTCEEEECCCTTCSCEEEEEESSSSCEEEEEEEECTTCEEEECTTCSCCBEEEEEECSEEEEEEEEEEEECCSCBSCSE
T ss_pred ECCEEEEECCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCCCCCCCEEEEEEEEEEEEEEEEEEECCCCEEEEEE
T ss_conf 06718963589986553523410332365678985188479972068877554577210356666312652673378999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 lvdf~dk~g~~~~p~kGiIenIkq~~AhtGYGlIQ~YggD~Ilf~nl~~~gGI~lRLEtdn~~mkN~kk~Gm~~IfatNI 240 (464)
T d1h80a_ 161 LVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNI 240 (464)
T ss_dssp EECEEEETTEEEEEEEEEEEEEEEESCCTTCEEEEESEEEEEEEEEEEEESSEEEEEECCCHHHHHHTCCEEEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCCCEEEEEECCCCHHHHHHHCCHHHHEEEEE
T ss_conf 88633056884788545655122137643523789613652898132035875899963872122012325131000001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 k~TnGlt~Vml~PHf~~ngdVsv~nItAi~cg~Avrv~~GFvE~F~kt~~a~~r~~fknyie~~lg~G~a~~~Y~R~Ngg 320 (464)
T d1h80a_ 241 RCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYARGNGG 320 (464)
T ss_dssp EEESSSEEEEEECTTCBCCCEEEEEEEEESSSCSEEECCCCCEECC---------------------CCBCCC-------
T ss_pred EECCCCCCEEECCCHHCCCCEEEEEEEEECCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC
T ss_conf 42588542564563000583478777762211469953652898568651556889999987654455113621206888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 T~WAaR~t~~da~l~~~~~~ygikpGsF~tskv~nVkA~~G~~AklKQ~fL~Y~pcsn~~~~~Vc~Pt~~g~~~~~~~Y~ 400 (464)
T d1h80a_ 321 TRWAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYI 400 (464)
T ss_dssp ---CEEBCSCHHHHHHHHHHTCCCCCBCSSEEEEEEEEECCSCEEECGGGGGGGGTTCTTCTTCBBCCTTTCSSTTSCEE
T ss_pred CEEEEECCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCHHHCCEECCCCCCCCCCCEEEC
T ss_conf 53101201522344204631256667523058888873246761245666633457774433420468565666641642
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 GPslg~~id~t~~~~~y~~~v~t~~v~~~~fp~n~~~~i~~nt~~~~vcn~~~~~~~~~~~~~~ 464 (464)
T d1h80a_ 401 GPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER 464 (464)
T ss_dssp ECCCCSEEECSCSSSSSCCCEEEEEEEEESCCTTCCSEECTTCCCCCCSCTTTSCBCCHHHHC-
T ss_pred CCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCHHCCCCCCCCCCHHCCCC
T ss_conf 7706888327877674210002433454178752057653389730110113533144200369
|
| >d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: iota-carrageenase domain: iota-carrageenase species: Alteromonas sp., atcc 43554 [TaxId: 232]
Probab=100.00 E-value=0 Score=35085.74 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~fy~~p~q~~~~~~lv~d~g~n~nDt~dDs~~L~~Ain~~sr~~~GG~l~lp~g~y~l~~I~m~SNVhiev 80 (464)
T d1h80a_ 1 VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIRV 80 (464)
T ss_dssp CCCCCCCGGGTCCCCSCCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHTSTTCEEEEECSSEEEECSEECCTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEECCCEEEEE
T ss_conf 98753346640138631102346211106678866672799999999862478985799727838898776136368997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 E~~~viyPT~~~d~KNhrlF~fg~~n~veN~si~g~G~~FtID~~~n~~kN~~~v~lg~V~nfkIsnf~I~DnkT~~asI 160 (464)
T d1h80a_ 81 ESDVIIKPTWNGDGKNHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASI 160 (464)
T ss_dssp CTTCEEEECCCTTCSCEEEEEESSSSCEEEEEEEECTTCEEEECTTCSCCBEEEEEECSEEEEEEEEEEEECCSCBSCSE
T ss_pred ECCEEEEECCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCCCCCCCEEEEEEEEEEEEEEEEEEECCCCEEEEEE
T ss_conf 06718963589986553523410332365678985188479972068877554577210356666312652673378999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 lvdf~dk~g~~~~p~kGiIenIkq~~AhtGYGlIQ~YggD~Ilf~nl~~~gGI~lRLEtdn~~mkN~kk~Gm~~IfatNI 240 (464)
T d1h80a_ 161 LVDVTERNGRLHWSRNGIIERIKQNNALFGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNI 240 (464)
T ss_dssp EECEEEETTEEEEEEEEEEEEEEEESCCTTCEEEEESEEEEEEEEEEEEESSEEEEEECCCHHHHHHTCCEEEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCCCEEEEEECCCCHHHHHHHCCHHHHEEEEE
T ss_conf 88633056884788545655122137643523789613652898132035875899963872122012325131000001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 k~TnGlt~Vml~PHf~~ngdVsv~nItAi~cg~Avrv~~GFvE~F~kt~~a~~r~~fknyie~~lg~G~a~~~Y~R~Ngg 320 (464)
T d1h80a_ 241 RCSKGLAAVMFGPHFMKNGDVQVTNVSSVSCGSAVRSDSGFVELFSPTDEVHTRQSWKQAVESKLGRGCAQTPYARGNGG 320 (464)
T ss_dssp EEESSSEEEEEECTTCBCCCEEEEEEEEESSSCSEEECCCCCEECC---------------------CCBCCC-------
T ss_pred EECCCCCCEEECCCHHCCCCEEEEEEEEECCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCC
T ss_conf 42588542564563000583478777762211469953652898568651556889999987654455113621206888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 T~WAaR~t~~da~l~~~~~~ygikpGsF~tskv~nVkA~~G~~AklKQ~fL~Y~pcsn~~~~~Vc~Pt~~g~~~~~~~Y~ 400 (464)
T d1h80a_ 321 TRWAARVTQKDACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLDYFSTSNPMCKRVCLPTKEQWSKQGQIYI 400 (464)
T ss_dssp ---CEEBCSCHHHHHHHHHHTCCCCCBCSSEEEEEEEEECCSCEEECGGGGGGGGTTCTTCTTCBBCCTTTCSSTTSCEE
T ss_pred CEEEEECCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCHHHCCEECCCCCCCCCCCEEEC
T ss_conf 53101201522344204631256667523058888873246761245666633457774433420468565666641642
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 GPslg~~id~t~~~~~y~~~v~t~~v~~~~fp~n~~~~i~~nt~~~~vcn~~~~~~~~~~~~~~ 464 (464)
T d1h80a_ 401 GPSLAAVIDTTPETSKYDYDVKTFNVKRINFPVNSHKTIDTNTESSRVCNYYGMSECSSSRWER 464 (464)
T ss_dssp ECCCCSEEECSCSSSSSCCCEEEEEEEEESCCTTCCSEECTTCCCCCCSCTTTSCBCCHHHHC-
T ss_pred CCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCHHCCCCCCCCCCHHCCCC
T ss_conf 7706888327877674210002433454178752057653389730110113533144200369
|
| >d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: Beta-glucosidase A species: Streptomyces sp. [TaxId: 1931]
Probab=100.00 E-value=0 Score=35084.08 Aligned_cols=1 Identities=100% Similarity=0.935 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~fP~~F~wG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~yRfSi~W 80 (464)
T d1gnxa_ 1 ALTFPEGFLWGSATASYQIEGAAAEDGRTPSIWDTYARTPGRVRNGDTGDVATDHYHRWREDVALMAELGLGAYRFSLAW 80 (464)
T ss_dssp CEECCTTCEEEEECCHHHHCCCTTSTTCCCBHHHHHHTSTTSSGGGCCSSSTTCHHHHHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCH
T ss_conf 99899999774566088766685889986657665323888535899987556545623999999998199989854779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 sRI~P~g~g~~n~~gl~~Y~~~i~~l~~~GI~P~VTL~HfdlP~~l~~~gGW~n~~~v~~F~~YA~~v~~~fgd~Vk~W~ 160 (464)
T d1gnxa_ 81 PRIQPTGRGPALQKGLDFYRRLADELLAKGIQPVATLYHWDLPQELENAGGWPERATAERFAEYAAIAADALGDRVKTWT 160 (464)
T ss_dssp HHHSGGGSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHHTTCTTSTHHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99264898886999999999999999971887789873476188876407887788999999999999998563030068
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 T~NEP~~~~~~gy~~g~~~pg~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~ig~~~~~~~~~p~~~~~~d~~aa~~ 240 (464)
T d1gnxa_ 161 TLNEPWCSAFLGYGSGVHAPGRTDPVAALRAAHHLNLGHGLAVQALRDRLPADAQCSVTLNIHHVRPLTDSDADADAVRR 240 (464)
T ss_dssp EEECHHHHHHHHHTSCSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEEEECCCEEESSSCHHHHHHHHH
T ss_pred ECCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHH
T ss_conf 80584243203645455543331189999988778788999999999973424663138864205512321678999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~dp~~~G~yP~~~~~~~~~~~~~~~~~~~d~~~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~ 320 (464)
T d1gnxa_ 241 IDALANRVFTGPMLQGAYPEDLVKDTAGLTDWSFVRDGDLRLAHQKLDFLGVNYYSPTLVSEADGSGTHNSDGHGRSAHS 320 (464)
T ss_dssp HHHHHTHHHHHHHHHSSCCHHHHHHTTTTCCCTTSCTTHHHHHCCCCSCEEEECSCCEEEC----------------CCC
T ss_pred HHHHHHHHCCCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99985000110544677976788876403766556767899751776521114432078854787776576655655566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~i~~~Y~~~PI~ITENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~ 400 (464)
T d1gnxa_ 321 PWPGADRVAFHQPPGETTAMGWAVDPSGLYELLRRLSSDFPALPLVITENGAAFHDYADPEGNVNDPERIAYVRDHLAAV 400 (464)
T ss_dssp SSTTCTTCCEECCSSCBCTTCCBCCHHHHHHHHHHHHHHCTTSCEEEEEECCCCCCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 77776644313898774778876764345899999998759997799825766556779767627878999999999999
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGl~~VD~~~~~R~pK~S~~~y~~ii~~~~~p~ 464 (464)
T d1gnxa_ 401 HRAIKDGSDVRGYFLWSLLDNFEWAHGYSKRFGAVYVDYPTGTRIPKASARWYAEVARTGVLPT 464 (464)
T ss_dssp HHHHHTTCCEEEEEEECSBCCCCGGGGGGCCCCSEEEETTTTEEEECHHHHHHHHHHHHCEEC-
T ss_pred HHHHHCCCCEEEEEECCCHHHCCHHHCCCCCCCEEEECCCCCCEEECCHHHHHHHHHHCCCCCC
T ss_conf 9999879998898553810322932304366740887489997614519999999997599999
|
| >d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: Beta-glucosidase A species: Streptomyces sp. [TaxId: 1931]
Probab=100.00 E-value=0 Score=35080.64 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~fP~~F~wG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~yRfSi~W 80 (464)
T d1gnxa_ 1 ALTFPEGFLWGSATASYQIEGAAAEDGRTPSIWDTYARTPGRVRNGDTGDVATDHYHRWREDVALMAELGLGAYRFSLAW 80 (464)
T ss_dssp CEECCTTCEEEEECCHHHHCCCTTSTTCCCBHHHHHHTSTTSSGGGCCSSSTTCHHHHHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCH
T ss_conf 99899999774566088766685889986657665323888535899987556545623999999998199989854779
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 sRI~P~g~g~~n~~gl~~Y~~~i~~l~~~GI~P~VTL~HfdlP~~l~~~gGW~n~~~v~~F~~YA~~v~~~fgd~Vk~W~ 160 (464)
T d1gnxa_ 81 PRIQPTGRGPALQKGLDFYRRLADELLAKGIQPVATLYHWDLPQELENAGGWPERATAERFAEYAAIAADALGDRVKTWT 160 (464)
T ss_dssp HHHSGGGSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHHTTCTTSTHHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99264898886999999999999999971887789873476188876407887788999999999999998563030068
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 T~NEP~~~~~~gy~~g~~~pg~~~~~~~~~~~~~~l~Aha~a~~~~~~~~~~~~~ig~~~~~~~~~p~~~~~~d~~aa~~ 240 (464)
T d1gnxa_ 161 TLNEPWCSAFLGYGSGVHAPGRTDPVAALRAAHHLNLGHGLAVQALRDRLPADAQCSVTLNIHHVRPLTDSDADADAVRR 240 (464)
T ss_dssp EEECHHHHHHHHHTSCSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEEEECCCEEESSSCHHHHHHHHH
T ss_pred ECCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHHHH
T ss_conf 80584243203645455543331189999988778788999999999973424663138864205512321678999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~dp~~~G~yP~~~~~~~~~~~~~~~~~~~d~~~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~ 320 (464)
T d1gnxa_ 241 IDALANRVFTGPMLQGAYPEDLVKDTAGLTDWSFVRDGDLRLAHQKLDFLGVNYYSPTLVSEADGSGTHNSDGHGRSAHS 320 (464)
T ss_dssp HHHHHTHHHHHHHHHSSCCHHHHHHTTTTCCCTTSCTTHHHHHCCCCSCEEEECSCCEEEC----------------CCC
T ss_pred HHHHHHHHCCCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99985000110544677976788876403766556767899751776521114432078854787776576655655566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~i~~~Y~~~PI~ITENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~ 400 (464)
T d1gnxa_ 321 PWPGADRVAFHQPPGETTAMGWAVDPSGLYELLRRLSSDFPALPLVITENGAAFHDYADPEGNVNDPERIAYVRDHLAAV 400 (464)
T ss_dssp SSTTCTTCCEECCSSCBCTTCCBCCHHHHHHHHHHHHHHCTTSCEEEEEECCCCCCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 77776644313898774778876764345899999998759997799825766556779767627878999999999999
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~Ai~dGv~v~GY~~WSl~Dn~EW~~Gy~~rfGl~~VD~~~~~R~pK~S~~~y~~ii~~~~~p~ 464 (464)
T d1gnxa_ 401 HRAIKDGSDVRGYFLWSLLDNFEWAHGYSKRFGAVYVDYPTGTRIPKASARWYAEVARTGVLPT 464 (464)
T ss_dssp HHHHHTTCCEEEEEEECSBCCCCGGGGGGCCCCSEEEETTTTEEEECHHHHHHHHHHHHCEEC-
T ss_pred HHHHHCCCCEEEEEECCCHHHCCHHHCCCCCCCEEEECCCCCCEEECCHHHHHHHHHHCCCCCC
T ss_conf 9999879998898553810322932304366740887489997614519999999997599999
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=0 Score=35007.82 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~L~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ 80 (463)
T d2a7va1 1 GWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQR 80 (463)
T ss_dssp CCSSCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHH
T ss_pred CCCCCCCHHHHCHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98655755565999999999999887638168656776899999985560016466889985345776259999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~ 160 (463)
T d2a7va1 81 RALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKT 160 (463)
T ss_dssp HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTT
T ss_pred HHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
T ss_conf 99998388700116776556618899999999708775587405676765446654555555402457665454015888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~IDyd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKT 240 (463)
T d2a7va1 161 GLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKT 240 (463)
T ss_dssp CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGG
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCHHHHHHHHHCHHHHH
T ss_conf 84749999999750477657723301355467999998760246638820134567766666258665542311104354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 lrGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~L 320 (463)
T d2a7va1 241 LRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAM 320 (463)
T ss_dssp GCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 26887438997254223455557531157887764102765212222336899999998735834899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 a~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm 400 (463)
T d2a7va1 321 ADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDF 400 (463)
T ss_dssp HHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred HHHHHHCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHH
T ss_conf 99998689706448888741452125547879999999875447237763889988899882586788998679988999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~iA~~I~~~l~~~~~~~~~~~~~~df~~~~~~~~~~~~~i~~lr~~V~~l~~~fP~pg~d~~ 463 (463)
T d2a7va1 401 RRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDEH 463 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCSSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999999765544433356777888750754299999999999999982989997889
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=0 Score=35006.19 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~L~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ 80 (463)
T d2a7va1 1 GWTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQR 80 (463)
T ss_dssp CCSSCCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHH
T ss_pred CCCCCCCHHHHCHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98655755565999999999999887638168656776899999985560016466889985345776259999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~ 160 (463)
T d2a7va1 81 RALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKT 160 (463)
T ss_dssp HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTT
T ss_pred HHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC
T ss_conf 99998388700116776556618899999999708775587405676765446654555555402457665454015888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~IDyd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKT 240 (463)
T d2a7va1 161 GLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKT 240 (463)
T ss_dssp CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGG
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHCCHHHHHHHHHCHHHHH
T ss_conf 84749999999750477657723301355467999998760246638820134567766666258665542311104354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 lrGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~L 320 (463)
T d2a7va1 241 LRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAM 320 (463)
T ss_dssp GCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 26887438997254223455557531157887764102765212222336899999998735834899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 a~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm 400 (463)
T d2a7va1 321 ADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDF 400 (463)
T ss_dssp HHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHH
T ss_pred HHHHHHCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHH
T ss_conf 99998689706448888741452125547879999999875447237763889988899882586788998679988999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~iA~~I~~~l~~~~~~~~~~~~~~df~~~~~~~~~~~~~i~~lr~~V~~l~~~fP~pg~d~~ 463 (463)
T d2a7va1 401 RRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDEH 463 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCSSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999999765544433356777888750754299999999999999982989997889
|
| >d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Vitamin D 25-hydroxylase Cyp2R1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35005.50 Aligned_cols=1 Identities=100% Similarity=2.430 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
|
T Consensus 1 ~PGP~~~P~iG~~~~~~~~~~~~~~~~~~~~~kyG~if~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~ 80 (463)
T d3czha1 1 PPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT 80 (463)
T ss_dssp CCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf 92799969244188863788748999999999809989999789009998999999999973862128887406667522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~g~~ 160 (463)
T d3czha1 81 KMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGER 160 (463)
T ss_dssp TTCSSTTCCSSHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHTTTTCCBCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCC
T ss_conf 78872237887588887777665431121147789999999999888876512797032699899999877766305753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (463)
T d3czha1 161 FTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKASVNRKPQLPQHFVDA 240 (463)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTCCSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 57443025667777665543200232000245640111012688999998899999999888864012221221200233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~s~~~i~~~~~~~l~ag~~tt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lp 320 (463)
T d3czha1 241 YLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMP 320 (463)
T ss_dssp HHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCCGGGGGGCH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 33355542122122027899988888997653023044555677762148379999877777542877888788887654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~l~a~~~Et~Rl~~~~~~~~~r~~~~~~~~~g~~ipkG~~v~~~~~~~~~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~ 400 (463)
T d3czha1 321 YTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALV 400 (463)
T ss_dssp HHHHHHHHHHHHHCSSTTCSCEECSSCEEETTEEECTTCEEEEEHHHHHTCTTTCSSTTSCCGGGGBCTTSCBCCCTTCC
T ss_pred HCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf 20445530002221344221002457755578078989736676777417800078764458412489765668998562
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~FG~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~R~ 463 (463)
T d3czha1 401 PFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQPQPYLICAERRH 463 (463)
T ss_dssp TTCCSTTCCTTHHHHHHHHHHHHHHHHHHEEEECGGGCCCCCCCCSSSSCCCCCCCBEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCEECCCEEEECCCCEEEEEECC
T ss_conf 889988478069999999999999999844998489999885354586984368379998593
|
| >d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Vitamin D 25-hydroxylase Cyp2R1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=35003.65 Aligned_cols=1 Identities=100% Similarity=2.264 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~PGP~~~P~iG~~~~~~~~~~~~~~~~~~~~~kyG~if~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~~ 80 (463)
T d3czha1 1 PPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT 80 (463)
T ss_dssp CCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHC
T ss_conf 92799969244188863788748999999999809989999789009998999999999973862128887406667522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~g~~ 160 (463)
T d3czha1 81 KMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGER 160 (463)
T ss_dssp TTCSSTTCCSSHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHTTTTCCBCCHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCC
T ss_conf 78872237887588887777665431121147789999999999888876512797032699899999877766305753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (463)
T d3czha1 161 FTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYDFLSRLIEKASVNRKPQLPQHFVDA 240 (463)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTCCSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 57443025667777665543200232000245640111012688999998899999999888864012221221200233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~s~~~i~~~~~~~l~ag~~tt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~lp 320 (463)
T d3czha1 241 YLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMP 320 (463)
T ss_dssp HHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCCGGGGGGCH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 33355542122122027899988888997653023044555677762148379999877777542877888788887654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~l~a~~~Et~Rl~~~~~~~~~r~~~~~~~~~g~~ipkG~~v~~~~~~~~~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~ 400 (463)
T d3czha1 321 YTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALV 400 (463)
T ss_dssp HHHHHHHHHHHHHCSSTTCSCEECSSCEEETTEEECTTCEEEEEHHHHHTCTTTCSSTTSCCGGGGBCTTSCBCCCTTCC
T ss_pred HCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf 20445530002221344221002457755578078989736676777417800078764458412489765668998562
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~FG~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~R~ 463 (463)
T d3czha1 401 PFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQPQPYLICAERRH 463 (463)
T ss_dssp TTCCSTTCCTTHHHHHHHHHHHHHHHHHHEEEECGGGCCCCCCCCSSSSCCCCCCCBEEEECC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCEECCCEEEECCCCEEEEEECC
T ss_conf 889988478069999999999999999844998489999885354586984368379998593
|
| >d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class-II DAHP synthetase domain: Probable DAHP synthetase AroG, phenylalanine-repressible species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=34936.66 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~Pa~QqP~ypd~~~l~v~~~L~~~PPLV~a~Ei~~Lk~~La~va~G~AF 80 (462)
T d2b7oa1 1 MNWTVDIPIDQLPSLPPLPTDLRTRLDAALAKPAAQQPTWPADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAF 80 (462)
T ss_dssp TTTEEEEECCCCCCCCCCCHHHHHHHHHHHTSCCTTCCCCCHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHTTSCE
T ss_pred CCCEECCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 97225274644778999981355524666429611289998989999999983289968899999999999999679889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 lLQgGDCAEsF~~~~~~~Ir~k~k~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRS~~~dgv~LpsYRGDiVN~~~f~~~ 160 (462)
T d2b7oa1 81 LLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADIDALGLRSYRGDMINGFAPDAA 160 (462)
T ss_dssp EEEEECSSCCSTTCSHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSSCCCCCCSCSBCTTSSBCCCCTTTSCSSSSHH
T ss_pred EEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98786434672124838999999999999999962569877984312220068866765556552226774458788723
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 aR~PDP~Rll~aY~~SaatLNllRa~~~gg~AdL~~v~~Wn~~f~~~s~~~~~y~~la~~I~~al~Fm~a~G~~~~~l~~ 240 (462)
T d2b7oa1 161 AREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADRNLQT 240 (462)
T ss_dssp HHSCCTHHHHHHHHHHHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHHTTCCGGGTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 04799899999999999999999985036765165532222244668826679999999999875047543997333455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~fyTSHEaLlL~YE~AltR~~~~d~~~~~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGiKvGP~~~pd~l~~L~ 320 (462)
T d2b7oa1 241 AEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYV 320 (462)
T ss_dssp CCEEEEEECCCHHHHHHTEEECCSSSSSCCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHH
T ss_pred CCCCCCHHHHCCCHHHHHEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf 53301047654015554312256667877531255513420343446664166998744686124468999989999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~LNP~nepGRltLI~RmGa~ki~~~LP~LI~aV~~~g~~VvW~cDPMHGNT~~s~~G~KTR~f~~Il~Ev~~ff~vh~~ 400 (462)
T d2b7oa1 321 ERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRA 400 (462)
T ss_dssp HHHCTTCCTTSEEEEECCCTTTHHHHHHHHHHHHHTTTCCCEEEECCSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCEEEEEEHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97492466650898741063889988899999987617954898258767740279985067789999999999999997
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~gt~~GGvHlE~TG~dVTEC~Gg~~~i~e~dL~~rY~T~CDPRLN~~QslelAf~ia~~l~~ 462 (462)
T d2b7oa1 401 LGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD 462 (462)
T ss_dssp HTCCCCEEEEEBCSSCCC-------------CCTTCCCSSSCCBCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEEECCCCCCEECCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 59866868788328984530798665784345225466789988979999999999998509
|
| >d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class-II DAHP synthetase domain: Probable DAHP synthetase AroG, phenylalanine-repressible species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=34933.57 Aligned_cols=1 Identities=0% Similarity=-0.893 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~Pa~QqP~ypd~~~l~v~~~L~~~PPLV~a~Ei~~Lk~~La~va~G~AF 80 (462)
T d2b7oa1 1 MNWTVDIPIDQLPSLPPLPTDLRTRLDAALAKPAAQQPTWPADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAF 80 (462)
T ss_dssp TTTEEEEECCCCCCCCCCCHHHHHHHHHHHTSCCTTCCCCCHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHTTSCE
T ss_pred CCCEECCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 97225274644778999981355524666429611289998989999999983289968899999999999999679889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 lLQgGDCAEsF~~~~~~~Ir~k~k~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRS~~~dgv~LpsYRGDiVN~~~f~~~ 160 (462)
T d2b7oa1 81 LLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADIDALGLRSYRGDMINGFAPDAA 160 (462)
T ss_dssp EEEEECSSCCSTTCSHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSSCCCCCCSCSBCTTSSBCCCCTTTSCSSSSHH
T ss_pred EEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98786434672124838999999999999999962569877984312220068866765556552226774458788723
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 aR~PDP~Rll~aY~~SaatLNllRa~~~gg~AdL~~v~~Wn~~f~~~s~~~~~y~~la~~I~~al~Fm~a~G~~~~~l~~ 240 (462)
T d2b7oa1 161 AREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADRNLQT 240 (462)
T ss_dssp HHSCCTHHHHHHHHHHHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHHTTCCGGGTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 04799899999999999999999985036765165532222244668826679999999999875047543997333455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~fyTSHEaLlL~YE~AltR~~~~d~~~~~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGiKvGP~~~pd~l~~L~ 320 (462)
T d2b7oa1 241 AEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYV 320 (462)
T ss_dssp CCEEEEEECCCHHHHHHTEEECCSSSSSCCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHH
T ss_pred CCCCCCHHHHCCCHHHHHEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf 53301047654015554312256667877531255513420343446664166998744686124468999989999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~LNP~nepGRltLI~RmGa~ki~~~LP~LI~aV~~~g~~VvW~cDPMHGNT~~s~~G~KTR~f~~Il~Ev~~ff~vh~~ 400 (462)
T d2b7oa1 321 ERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRA 400 (462)
T ss_dssp HHHCTTCCTTSEEEEECCCTTTHHHHHHHHHHHHHTTTCCCEEEECCSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCEEEEEEHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97492466650898741063889988899999987617954898258767740279985067789999999999999997
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~gt~~GGvHlE~TG~dVTEC~Gg~~~i~e~dL~~rY~T~CDPRLN~~QslelAf~ia~~l~~ 462 (462)
T d2b7oa1 401 LGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD 462 (462)
T ss_dssp HTCCCCEEEEEBCSSCCC-------------CCTTCCCSSSCCBCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEEECCCCCCEECCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 59866868788328984530798665784345225466789988979999999999998509
|
| >d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: L-aspartate ammonia lyase species: Bacillus sp., ym55-1 [TaxId: 1409]
Probab=100.00 E-value=0 Score=34932.84 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~r~e~d~~g~~~~~~~~~~g~~t~r~~~nf~i~~~~~~~~~i~a~~~vk~A~A~an~~~G~i~~~~a~aI~~a~~ei~~~ 80 (462)
T d1j3ua_ 1 VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEG 80 (462)
T ss_dssp CCEEEETTEEEECCTTCCCCHHHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 97310478774377655114989999976797778689999999999999999999984999999999999999999849
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~f~~d~~~~g~gt~~~~~~~e~i~~~~~~~~g~~~g~~~~~~p~~~vH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l 160 (462)
T d1j3ua_ 81 KWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETT 160 (462)
T ss_dssp SCGGGCCSCSSCSGGGHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74346421267530202234201136677777750775787554441113442356365788999999999861346689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~l~~~L~~~A~~~~~tvm~GRTHlQ~A~PiTfG~~~~~~~~~l~r~~~RL~~~~~~l~~~~lGg~a~g~~~~~~~~~~~ 240 (462)
T d1j3ua_ 161 KYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYIS 240 (462)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTGGGSEECTTCTTTSSCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999998860364434687476423366898899999999999899999999997640365333444578603555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Di~ll~s~e~~~i~E~~~~~~~~GSSiMP~K 320 (462)
T d1j3ua_ 241 IVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGK 320 (462)
T ss_dssp HHHHHHHHHHCSCCEECSSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTSCCCEECCCCSCCCSSCTTC
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHCCC
T ss_conf 66676766521441012106877610079999999999999999999999999837741200010356445533641465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 rNP~~~E~v~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~gl~vn~erm~~~l~~ 400 (462)
T d1j3ua_ 321 VNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEK 400 (462)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCEECHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHC
T ss_conf 58704866405572025744123666402543431214064443466999999999999999975489999999999870
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 s~~l~taLa~~ig~~~A~~i~~~A~~~g~~l~e~~~~~~~Ls~eeld~lldP~~~~~pg~~g 462 (462)
T d1j3ua_ 401 SIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPGIAG 462 (462)
T ss_dssp CTTGGGGTGGGSHHHHHHHHHHTTTTSCCCHHHHHHTTCSSCHHHHHHHSCTTGGGSBCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCCCCC
T ss_conf 74689884077899999999999999699899999883899999999864999852898899
|
| >d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: L-aspartate ammonia lyase species: Bacillus sp., ym55-1 [TaxId: 1409]
Probab=100.00 E-value=0 Score=34929.81 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~r~e~d~~g~~~~~~~~~~g~~t~r~~~nf~i~~~~~~~~~i~a~~~vk~A~A~an~~~G~i~~~~a~aI~~a~~ei~~~ 80 (462)
T d1j3ua_ 1 VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEG 80 (462)
T ss_dssp CCEEEETTEEEECCTTCCCCHHHHHHHHHCCSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 97310478774377655114989999976797778689999999999999999999984999999999999999999849
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~f~~d~~~~g~gt~~~~~~~e~i~~~~~~~~g~~~g~~~~~~p~~~vH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l 160 (462)
T d1j3ua_ 81 KWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETT 160 (462)
T ss_dssp SCGGGCCSCSSCSGGGHHHHHHHHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74346421267530202234201136677777750775787554441113442356365788999999999861346689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~l~~~L~~~A~~~~~tvm~GRTHlQ~A~PiTfG~~~~~~~~~l~r~~~RL~~~~~~l~~~~lGg~a~g~~~~~~~~~~~ 240 (462)
T d1j3ua_ 161 KYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYIS 240 (462)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTGGGSEECTTCTTTSSCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999998860364434687476423366898899999999999899999999997640365333444578603555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Di~ll~s~e~~~i~E~~~~~~~~GSSiMP~K 320 (462)
T d1j3ua_ 241 IVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGK 320 (462)
T ss_dssp HHHHHHHHHHCSCCEECSSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTSCCCEECCCCSCCCSSCTTC
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHCCC
T ss_conf 66676766521441012106877610079999999999999999999999999837741200010356445533641465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 rNP~~~E~v~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~gl~vn~erm~~~l~~ 400 (462)
T d1j3ua_ 321 VNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEK 400 (462)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCEECHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHC
T ss_conf 58704866405572025744123666402543431214064443466999999999999999975489999999999870
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 s~~l~taLa~~ig~~~A~~i~~~A~~~g~~l~e~~~~~~~Ls~eeld~lldP~~~~~pg~~g 462 (462)
T d1j3ua_ 401 SIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEILNPYEMIHPGIAG 462 (462)
T ss_dssp CTTGGGGTGGGSHHHHHHHHHHTTTTSCCCHHHHHHTTCSSCHHHHHHHSCTTGGGSBCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCCCCC
T ss_conf 74689884077899999999999999699899999883899999999864999852898899
|
| >d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: Thioglucosidase species: Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]
Probab=100.00 E-value=0 Score=34926.98 Aligned_cols=1 Identities=0% Similarity=-0.993 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~FP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~yRfSi~W 80 (462)
T d1wcga1 1 YKFPKDFMFGTSTASYQIEGGWNEDGKGENIWDRLVHTSPEVIKDGTNGDIACDSYHKYKEDVAIIKDLNLKFYRFSISW 80 (462)
T ss_dssp CCCCTTCEEEEECCHHHHCCCTTSTTCCCBHHHHHHHHCGGGSTTSCCSSSTTCHHHHHHHHHHHHHHHTCSEEEEECCH
T ss_pred CCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 95879988757863777567818899864177776523887546899987656555511999999998099989710769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 sRI~P~G~~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~Hfd~P~~l~~~GGW~~~~~v~~F~~Ya~~v~~~fgd~V~~W 160 (462)
T d1wcga1 81 ARIAPSGVMNSLEPKGIAYYNNLINELIKNDIIPLVTMYHWDLPQYLQDLGGWVNPIMSDYFKEYARVLFTYFGDRVKWW 160 (462)
T ss_dssp HHHSTTSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHHTTGGGSTTHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHE
T ss_conf 98646787898699999999999999985597567875156530335534885527899999999998998605412120
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~T~NEP~~~~~~~~~~~~~P~~~~~~~~~~~a~h~~l~AHa~A~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~d~~ 240 (462)
T d1wcga1 161 ITFNEPIAVCKGYSIKAYAPNLNLKTTGHYLAGHTQLIAHGKAYRLYEEMFKPTQNGKISISISGVFFMPKNAESDDDIE 240 (462)
T ss_dssp EEEECHHHHHHHHHSSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCEEEEEECCCEEEESSTTCHHHHH
T ss_pred EEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCHHHHH
T ss_conf 44058730221243023368855204788999999988899999999987324556522213404306854888357899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 aa~~~~~~~n~~~~d~~~~g~yP~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~i~~~~DfiGiNyYt~~~v~~~~~~~~ 320 (462)
T d1wcga1 241 TAERANQFERGWFGHPVYKGDYPPIMKKWVDQKSKEEGLPWSKLPKFTKDEIKLLKGTADFYALNHYSSRLVTFGSDPNP 320 (462)
T ss_dssp HHHHHHHHHTHHHHHHHHTSSSCHHHHHHHHHHHHHTTCSSCSSCCCCHHHHHHHTTCCSSEEEECCCEEEEEESCCSST
T ss_pred HHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEECCEEECCCCCCC
T ss_conf 99999876311355521478787999999997567507763358876888998733886578884002514203668887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gl~~~L~~i~~~Y~~ppI~ITENG~a~~g~i~D~~Ri~yl~~hl~~~~~A 400 (462)
T d1wcga1 321 NFNPDASYVTSVDEAWLKPNETPYIIPVPEGLRKLLIWLKNEYGNPQLLITENGYGDDGQLDDFEKISYLKNYLNATLQA 400 (462)
T ss_dssp TSCGGGCEEEECCGGGCCSSCCCSSCCCHHHHHHHHHHHHHHHTSCCEEEEEECCCBSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 86877554444567765777887730286899999999998649997799617868888727778999999999999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------~ 1683 (1815)
+
T Consensus 401 i~~dGv~v~GY~~WSl~Dn~EW~~Gy~~RFGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~~p 462 (462)
T d1wcga1 401 MYEDKCNVIGYTVWSLLDNFEWFYGYSIHFGLVKIDFNDPQRTRTKRESYTYFKNVVSTGKP 462 (462)
T ss_dssp HHHHCCCEEEEEEECSBCCCCGGGGGGSBCCSEEECTTSTTCCEEECHHHHHHHHHHHHSCC
T ss_pred HHHCCCCEEEEEECCCCHHCCHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99679986898444720422810045476631897088998855224199999999863999
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=100.00 E-value=0 Score=34925.30 Aligned_cols=1 Identities=100% Similarity=2.530 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
|
T Consensus 1 ~p~~~~l~~~~~~~~~~f~~Pgh~~g~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~ld~l~~~~~~i~eae~~~A~~~g 80 (462)
T d1c4ka2 1 PPFFKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYN 80 (462)
T ss_dssp CHHHHHHHHHHTSCCCCCSSSTTTTTTTGGGSHHHHHHHHHHCSHHHHSCCCTTSGGGCBTTTTBTHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 96489999998289976306776888777877420789998600300222002204557755787799999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (462)
T d1c4ka2 81 ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIREL 160 (462)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98389978823999999999961899858864100687999999980578555326605666547887587619998746
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D 240 (462)
T d1c4ka2 161 AAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGI 240 (462)
T ss_dssp TTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEE
T ss_pred HHHHCHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 51216876623588506999730001013229999999987399899953222042236767742543043346667864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~ 320 (462)
T d1c4ka2 241 IVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLIT 320 (462)
T ss_dssp EEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79983675555666537998546301542102467888876530266783577899999999988766899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~ 400 (462)
T d1c4ka2 321 TIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPET 400 (462)
T ss_dssp HHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCCCHHCCCCCCCCCCEECCCCEEEEECCCCCCCC
T ss_conf 99999999975435422553112563001330676540331000477510103343475410025522488437744456
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~~~ 462 (462)
T d1c4ka2 401 GDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEED 462 (462)
T ss_dssp TEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHCCCCHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 42532498689999999984981101689859999258999999999999999999987369
|
| >d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Family 1 of glycosyl hydrolase domain: Thioglucosidase species: Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]
Probab=100.00 E-value=0 Score=34924.13 Aligned_cols=1 Identities=0% Similarity=-0.926 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~FP~~FlwG~atsa~Q~EG~~~~dg~~~s~wd~~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~yRfSi~W 80 (462)
T d1wcga1 1 YKFPKDFMFGTSTASYQIEGGWNEDGKGENIWDRLVHTSPEVIKDGTNGDIACDSYHKYKEDVAIIKDLNLKFYRFSISW 80 (462)
T ss_dssp CCCCTTCEEEEECCHHHHCCCTTSTTCCCBHHHHHHHHCGGGSTTSCCSSSTTCHHHHHHHHHHHHHHHTCSEEEEECCH
T ss_pred CCCCCCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 95879988757863777567818899864177776523887546899987656555511999999998099989710769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 sRI~P~G~~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~Hfd~P~~l~~~GGW~~~~~v~~F~~Ya~~v~~~fgd~V~~W 160 (462)
T d1wcga1 81 ARIAPSGVMNSLEPKGIAYYNNLINELIKNDIIPLVTMYHWDLPQYLQDLGGWVNPIMSDYFKEYARVLFTYFGDRVKWW 160 (462)
T ss_dssp HHHSTTSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCCBHHHHHTTGGGSTTHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHE
T ss_conf 98646787898699999999999999985597567875156530335534885527899999999998998605412120
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~T~NEP~~~~~~~~~~~~~P~~~~~~~~~~~a~h~~l~AHa~A~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~d~~ 240 (462)
T d1wcga1 161 ITFNEPIAVCKGYSIKAYAPNLNLKTTGHYLAGHTQLIAHGKAYRLYEEMFKPTQNGKISISISGVFFMPKNAESDDDIE 240 (462)
T ss_dssp EEEECHHHHHHHHHSSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCEEEEEECCCEEEESSTTCHHHHH
T ss_pred EEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCHHHHH
T ss_conf 44058730221243023368855204788999999988899999999987324556522213404306854888357899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 aa~~~~~~~n~~~~d~~~~g~yP~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~i~~~~DfiGiNyYt~~~v~~~~~~~~ 320 (462)
T d1wcga1 241 TAERANQFERGWFGHPVYKGDYPPIMKKWVDQKSKEEGLPWSKLPKFTKDEIKLLKGTADFYALNHYSSRLVTFGSDPNP 320 (462)
T ss_dssp HHHHHHHHHTHHHHHHHHTSSSCHHHHHHHHHHHHHTTCSSCSSCCCCHHHHHHHTTCCSSEEEECCCEEEEEESCCSST
T ss_pred HHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEECCEEECCCCCCC
T ss_conf 99999876311355521478787999999997567507763358876888998733886578884002514203668887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gl~~~L~~i~~~Y~~ppI~ITENG~a~~g~i~D~~Ri~yl~~hl~~~~~A 400 (462)
T d1wcga1 321 NFNPDASYVTSVDEAWLKPNETPYIIPVPEGLRKLLIWLKNEYGNPQLLITENGYGDDGQLDDFEKISYLKNYLNATLQA 400 (462)
T ss_dssp TSCGGGCEEEECCGGGCCSSCCCSSCCCHHHHHHHHHHHHHHHTSCCEEEEEECCCBSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 86877554444567765777887730286899999999998649997799617868888727778999999999999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 i~~dGv~v~GY~~WSl~Dn~EW~~Gy~~RFGL~~VD~~~~~~~R~pK~S~~~y~~ii~~~~p 462 (462)
T d1wcga1 401 MYEDKCNVIGYTVWSLLDNFEWFYGYSIHFGLVKIDFNDPQRTRTKRESYTYFKNVVSTGKP 462 (462)
T ss_dssp HHHHCCCEEEEEEECSBCCCCGGGGGGSBCCSEEECTTSTTCCEEECHHHHHHHHHHHHSCC
T ss_pred HHHCCCCEEEEEECCCCHHCCHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99679986898444720422810045476631897088998855224199999999863999
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=100.00 E-value=0 Score=34921.68 Aligned_cols=1 Identities=100% Similarity=2.430 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~p~~~~l~~~~~~~~~~f~~Pgh~~g~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~ld~l~~~~~~i~eae~~~A~~~g 80 (462)
T d1c4ka2 1 PPFFKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYN 80 (462)
T ss_dssp CHHHHHHHHHHTSCCCCCSSSTTTTTTTGGGSHHHHHHHHHHCSHHHHSCCCTTSGGGCBTTTTBTHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 96489999998289976306776888777877420789998600300222002204557755787799999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (462)
T d1c4ka2 81 ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIREL 160 (462)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98389978823999999999961899858864100687999999980578555326605666547887587619998746
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D 240 (462)
T d1c4ka2 161 AAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGI 240 (462)
T ss_dssp TTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEE
T ss_pred HHHHCHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 51216876623588506999730001013229999999987399899953222042236767742543043346667864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~ 320 (462)
T d1c4ka2 241 IVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLIT 320 (462)
T ss_dssp EEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79983675555666537998546301542102467888876530266783577899999999988766899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~ 400 (462)
T d1c4ka2 321 TIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPET 400 (462)
T ss_dssp HHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCCCHHCCCCCCCCCCEECCCCEEEEECCCCCCCC
T ss_conf 99999999975435422553112563001330676540331000477510103343475410025522488437744456
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r~~~~~ 462 (462)
T d1c4ka2 401 GDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLIEED 462 (462)
T ss_dssp TEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHCCCCHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 42532498689999999984981101689859999258999999999999999999987369
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=100.00 E-value=0 Score=34850.33 Aligned_cols=1 Identities=0% Similarity=-1.159 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~~~~~~~~hil~~p~P~~GH~~P~l~lA~~L~~rGH~V~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
T d2acva1 1 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQ 80 (461)
T ss_dssp CHHHHHCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCCCCCCG
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf 99889999089946703668999999999999779984999983785312256650554446789805897888777603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (461)
T d2acva1 81 ELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEE 160 (461)
T ss_dssp GGGGSHHHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTTC
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCCCCC
T ss_conf 34416899999999999999999999731488839997044569999999838870897133201567764133344455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (461)
T d2acva1 161 VFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIY 240 (461)
T ss_dssp CCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCE
T ss_conf 54444555443356431210034433444430211378999999863015653321101344235665542246789712
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (461)
T d2acva1 241 AVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPE 320 (461)
T ss_dssp ECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCT
T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 22553024776677755457177888876177653034521344357999999999999985376079984045455886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~n~~v~~~~pq~~~l~~p~~~~fItHGG~gs~~eAl~~GVP~l~~P~~~DQ~~nA~rlve~~G~G~~l~~~ 400 (461)
T d2acva1 321 GFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 400 (461)
T ss_dssp THHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSS
T ss_pred CCHHHHCCCCCEEEEECCCHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf 30333125787389851877888855657779833884489999985999896776000288999999984936784153
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~~~~t~~~l~~a~~~vl~~d~~~r~~a~~l~~~~r~a~~~gg~s~~~~~~~~~~~~~ 461 (461)
T d2acva1 401 YRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDITG 461 (461)
T ss_dssp CCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 1136785479999999999960889999999999999999842799669999999997139
|
| >d2p3ya1 e.65.1.1 (A:22-482) Hypothetical protein VPA0735 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: VPA0735-like superfamily: VPA0735-like family: VPA0735-like domain: Hypothetical protein VPA0735 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=100.00 E-value=0 Score=34848.35 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~~~~g~~~f~~g~Pt~~t~~~~~d~~~~~rA~qAyi~g~P~v~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~vv 80 (461)
T d2p3ya1 1 QETVVPSRVGDLKFESDFPTQETMKNMLNEMDFQRATQAYLWGIPASSIMEWLNVSRNDFKFEEGQMGFFNTLKQKQGII 80 (461)
T ss_dssp CEEEECCTTCCEEEETTEECHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCTTCEEEECSHHHHTTST
T ss_pred CCCEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCC
T ss_conf 98355024024664689999999999999899999999999888999999999877650378765200212477456535
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 TpN~DTlYs~a~lDLs~~gPvVi~vP~~~~ry~~~~~~d~~~~~~~~~G~~~~~~G~yli~~pG~~~~G~~P~g~~vi~s 160 (461)
T d2p3ya1 81 TANFTTPYVIGTWNLEKTGPLIINLPEAKMAGMMLDVHQRVLSDLSLLGPDKGKGGKYLIVPPGEKYKDLNPKGYYVIRP 160 (461)
T ss_dssp TCCSSSCEEEEEEEHHHHCSEEEEECSCCEEEEEEETTCCEEEEEETTSTTTTSCEEEEECCSSGGGTTCCCTTSEEECC
T ss_pred CCCCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEC
T ss_conf 78888620567877178988899968989857998621155223013666656897079994688778889995089936
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 pT~~~~~~~R~~~~~~~~~v~~~q~~~~i~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ff~~l~~~l~~~P~~~~D~~ 240 (461)
T d2p3ya1 161 KTNVVYGGIRILEPDVDRVVKQVVPNITTQPYADGKLGRKIPVAQVPEIDWTHIPKDGLEYWKTIHQIIQENPVEERDRF 240 (461)
T ss_dssp SSSEEEEEEEECCSCHHHHHHTTGGGCEEEECTTTTCCCCEECEECCSCCCCCSCCCHHHHHHHHHHHHHHSCCCGGGHH
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 97327788861268769999999745577622114577888866577777566786678999999999985899843899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~la~iGI~~G~~F~p~~~~~~~l~~a~~~~~a~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~y~~~~~r~~~ 320 (461)
T d2p3ya1 241 VMAQLKFLGIEKGKPFNPTEEQKKILLEASKVGRAMAQSNDYTKRFTQPYWKGTNWKDAISVSLDQRSENYDELDERAAW 320 (461)
T ss_dssp HHHHHGGGTCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCSSTTSSCEESCCSCTTCBCSSSBCHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999982877899889343417899999999999998876432024455467886313566556567773104467899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~rA~~a~~gl~a~~p~~~a~Y~~~~~D~~G~~L~G~~~Y~L~fp~~pPv~~FWSvT~Yd~~~~~lv~N~~~rysi~s~~ 400 (461)
T d2p3ya1 321 FYEAITVSRGMKSTIPGFGQRYLVTYQDSDGNWLSGEHTYKLHVPANVPASNFWSTTVYDENNRLMIINDAGSPDISSRK 400 (461)
T ss_dssp HHHCCCCCGGGGCCSTTSSEEEEEECBBTTSCBCBTTSCEEEEECSSCSEEEEEEEEEEETTTCSBCCCSSCCCEEETTS
T ss_pred HHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999855332036755101002101079988158886279970899986477789997489850056865556647876
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~l~~n~DGSl~Iy~~~~~p~~~~~NWLPt~pg~~f~l~lRlY~P~~~~ldgtW~pP~ie~V 461 (461)
T d2p3ya1 401 NLKVNSDGSIDVYYGPKPVKGYENNWVQTNPGEGWFTYFRFYGPTEKMFDKSWTMGDIELV 461 (461)
T ss_dssp CCCBCTTSCEEEEESSSCCTTCTTSBCCCCTTCBEEEEEEEEEECHHHHTCCSCCCCBEEC
T ss_pred CCEECCCCCEEEEECCCCCCCCCCCCEECCCCCCCEEEEEEECCCHHHHCCCCCCCCEEEC
T ss_conf 7638999988999747999888777415799998489999867876974894179988679
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=100.00 E-value=0 Score=34847.33 Aligned_cols=1 Identities=0% Similarity=-0.627 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~hil~~p~P~~GH~~P~l~lA~~L~~rGH~V~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
T d2acva1 1 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEVEPPPQ 80 (461)
T ss_dssp CHHHHHCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCCCCCCG
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf 99889999089946703668999999999999779984999983785312256650554446789805897888777603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (461)
T d2acva1 81 ELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEE 160 (461)
T ss_dssp GGGGSHHHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTTC
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCCCCC
T ss_conf 34416899999999999999999999731488839997044569999999838870897133201567764133344455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (461)
T d2acva1 161 VFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIY 240 (461)
T ss_dssp CCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCE
T ss_conf 54444555443356431210034433444430211378999999863015653321101344235665542246789712
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (461)
T d2acva1 241 AVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPE 320 (461)
T ss_dssp ECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCT
T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 22553024776677755457177888876177653034521344357999999999999985376079984045455886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~n~~v~~~~pq~~~l~~p~~~~fItHGG~gs~~eAl~~GVP~l~~P~~~DQ~~nA~rlve~~G~G~~l~~~ 400 (461)
T d2acva1 321 GFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 400 (461)
T ss_dssp THHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSS
T ss_pred CCHHHHCCCCCEEEEECCCHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf 30333125787389851877888855657779833884489999985999896776000288999999984936784153
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~~~~~t~~~l~~a~~~vl~~d~~~r~~a~~l~~~~r~a~~~gg~s~~~~~~~~~~~~~ 461 (461)
T d2acva1 401 YRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDITG 461 (461)
T ss_dssp CCTTCCCCCHHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 1136785479999999999960889999999999999999842799669999999997139
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=34845.43 Aligned_cols=1 Identities=0% Similarity=-1.989 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~pgp~s~~l~~~~~~~~~~~~~~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ 80 (461)
T d1ohwa_ 1 FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQ 80 (461)
T ss_dssp CCCSSCBCCSCSSCHHHHHHHHHHHHHSCCTTCCCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHC
T ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCEEEECCCCHHHHHHCCCCHHHHHHHHH
T ss_conf 99899877217979589999999987638988778817999253789989979999865599877662892999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~ 160 (461)
T d1ohwa_ 81 PQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCM 160 (461)
T ss_dssp GGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 98352101254225555689999999998752125854366503203566999999999765115675421000012222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (461)
T d1ohwa_ 161 INQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIV 240 (461)
T ss_dssp TTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 10145788854998058757777554025688443456644457766654221245322355541023335889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~ 320 (461)
T d1ohwa_ 241 KYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKK 320 (461)
T ss_dssp HHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGG
T ss_pred HHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 98737875304553121235654672156788999998863763340135553344321001123454447104443310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 l~~g~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl 400 (461)
T d1ohwa_ 321 MMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT 400 (461)
T ss_dssp GSSEEEEECGGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 13355410012233455322233333332100110320234312699999999999999999997468883677662108
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------~ 1683 (1815)
=
T Consensus 401 ~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 401 FCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999828879999999999979959940799989995996789999999999999999659
|
| >d2p3ya1 e.65.1.1 (A:22-482) Hypothetical protein VPA0735 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: VPA0735-like superfamily: VPA0735-like family: VPA0735-like domain: Hypothetical protein VPA0735 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=100.00 E-value=0 Score=34844.87 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~g~~~f~~g~Pt~~t~~~~~d~~~~~rA~qAyi~g~P~v~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~vv 80 (461)
T d2p3ya1 1 QETVVPSRVGDLKFESDFPTQETMKNMLNEMDFQRATQAYLWGIPASSIMEWLNVSRNDFKFEEGQMGFFNTLKQKQGII 80 (461)
T ss_dssp CEEEECCTTCCEEEETTEECHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCTTCEEEECSHHHHTTST
T ss_pred CCCEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCC
T ss_conf 98355024024664689999999999999899999999999888999999999877650378765200212477456535
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 TpN~DTlYs~a~lDLs~~gPvVi~vP~~~~ry~~~~~~d~~~~~~~~~G~~~~~~G~yli~~pG~~~~G~~P~g~~vi~s 160 (461)
T d2p3ya1 81 TANFTTPYVIGTWNLEKTGPLIINLPEAKMAGMMLDVHQRVLSDLSLLGPDKGKGGKYLIVPPGEKYKDLNPKGYYVIRP 160 (461)
T ss_dssp TCCSSSCEEEEEEEHHHHCSEEEEECSCCEEEEEEETTCCEEEEEETTSTTTTSCEEEEECCSSGGGTTCCCTTSEEECC
T ss_pred CCCCCCCCEEEEEECCCCCCEEEEECCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEC
T ss_conf 78888620567877178988899968989857998621155223013666656897079994688778889995089936
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 pT~~~~~~~R~~~~~~~~~v~~~q~~~~i~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ff~~l~~~l~~~P~~~~D~~ 240 (461)
T d2p3ya1 161 KTNVVYGGIRILEPDVDRVVKQVVPNITTQPYADGKLGRKIPVAQVPEIDWTHIPKDGLEYWKTIHQIIQENPVEERDRF 240 (461)
T ss_dssp SSSEEEEEEEECCSCHHHHHHTTGGGCEEEECTTTTCCCCEECEECCSCCCCCSCCCHHHHHHHHHHHHHHSCCCGGGHH
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 97327788861268769999999745577622114577888866577777566786678999999999985899843899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~la~iGI~~G~~F~p~~~~~~~l~~a~~~~~a~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~y~~~~~r~~~ 320 (461)
T d2p3ya1 241 VMAQLKFLGIEKGKPFNPTEEQKKILLEASKVGRAMAQSNDYTKRFTQPYWKGTNWKDAISVSLDQRSENYDELDERAAW 320 (461)
T ss_dssp HHHHHGGGTCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCSSTTSSCEESCCSCTTCBCSSSBCHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999982877899889343417899999999999998876432024455467886313566556567773104467899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~rA~~a~~gl~a~~p~~~a~Y~~~~~D~~G~~L~G~~~Y~L~fp~~pPv~~FWSvT~Yd~~~~~lv~N~~~rysi~s~~ 400 (461)
T d2p3ya1 321 FYEAITVSRGMKSTIPGFGQRYLVTYQDSDGNWLSGEHTYKLHVPANVPASNFWSTTVYDENNRLMIINDAGSPDISSRK 400 (461)
T ss_dssp HHHCCCCCGGGGCCSTTSSEEEEEECBBTTSCBCBTTSCEEEEECSSCSEEEEEEEEEEETTTCSBCCCSSCCCEEETTS
T ss_pred HHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999855332036755101002101079988158886279970899986477789997489850056865556647876
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~l~~n~DGSl~Iy~~~~~p~~~~~NWLPt~pg~~f~l~lRlY~P~~~~ldgtW~pP~ie~V 461 (461)
T d2p3ya1 401 NLKVNSDGSIDVYYGPKPVKGYENNWVQTNPGEGWFTYFRFYGPTEKMFDKSWTMGDIELV 461 (461)
T ss_dssp CCCBCTTSCEEEEESSSCCTTCTTSBCCCCTTCBEEEEEEEEEECHHHHTCCSCCCCBEEC
T ss_pred CCEECCCCCEEEEECCCCCCCCCCCCEECCCCCCCEEEEEEECCCHHHHCCCCCCCCEEEC
T ss_conf 7638999988999747999888777415799998489999867876974894179988679
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=34843.47 Aligned_cols=1 Identities=0% Similarity=-2.022 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~~~~~~~pgp~s~~l~~~~~~~~~~~~~~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ 80 (461)
T d1ohwa_ 1 FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQ 80 (461)
T ss_dssp CCCSSCBCCSCSSCHHHHHHHHHHHHHSCCTTCCCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHC
T ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCEEEECCCCHHHHHHCCCCHHHHHHHHH
T ss_conf 99899877217979589999999987638988778817999253789989979999865599877662892999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~ 160 (461)
T d1ohwa_ 81 PQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCM 160 (461)
T ss_dssp GGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 98352101254225555689999999998752125854366503203566999999999765115675421000012222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (461)
T d1ohwa_ 161 INQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIV 240 (461)
T ss_dssp TTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 10145788854998058757777554025688443456644457766654221245322355541023335889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~ 320 (461)
T d1ohwa_ 241 KYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKK 320 (461)
T ss_dssp HHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGG
T ss_pred HHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 98737875304553121235654672156788999998863763340135553344321001123454447104443310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~~g~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl 400 (461)
T d1ohwa_ 321 MMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT 400 (461)
T ss_dssp GSSEEEEECGGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 13355410012233455322233333332100110320234312699999999999999999997468883677662108
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~ef 461 (461)
T d1ohwa_ 401 FCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 461 (461)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999828879999999999979959940799989995996789999999999999999659
|
| >d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Poliovirus type 1, strain Mahoney [TaxId: 12080]
Probab=100.00 E-value=0 Score=34842.93 Aligned_cols=1 Identities=0% Similarity=-1.258 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~g~p~i~~p~KT~l~~S~~~~~~~~~~ePa~Ls~~DpR~~~~~~~~~~~k~~~~~~~~~~~~l~~~~~~ 80 (461)
T d1ra6a_ 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDH 80 (461)
T ss_dssp CEEEEEEETTTTTCCCCCCCSSCSCEECTTTTTSCCCCEECCCSTTCTTCSSCHHHHHHTTCCCCCCCSCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCHHHEECCCCCCCCCCHHHHHHHHHH
T ss_conf 97216756565799865687880763677556899887699899999999999346445013589888861899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~t~~~Ai~G~~~~~~~~~~TS~G~P~~~~g~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lKD 160 (461)
T d1ra6a_ 81 YAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKD 160 (461)
T ss_dssp HHHHHHTTCCCCSCCCHHHHHHCBTTBCCCCTTSCCCTTTTTTTCCHHHHCCTTTTCCHHHHHHHHHTCSCCCEEEEECC
T ss_pred HHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEHHHHC
T ss_conf 99877534788777778887456554124688988988773479870132288626699999998624888705326532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 E~~p~~Kv~~gKtR~f~~~p~~~~i~~r~~f~~f~~~~~~~~~~~~~~~vG~np~~~w~~l~~~l~~~~~~~DyS~FD~s 240 (461)
T d1ra6a_ 161 ELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 (461)
T ss_dssp CEECHHHHHTTCCCEEEECCHHHHHHHHHHHHHHHHHHHHCTBTTTTBCTTCCHHHHTTTHHHHSCSEEECCEESSHHHH
T ss_pred CCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 76878981899973999799899999999999999999974888898664167456799999865377685514677886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~v~~~~~~il~~~~~~~~~~~i~~l~~~~~i~~~~vy~v~~GlPSG~~~T~iiNSi~N~i~i~~a~~~~~~~~~~~~ 320 (461)
T d1ra6a_ 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDH 320 (461)
T ss_dssp CCHHHHHHHHHHHHHTTTGGGTHHHHHHHEEEEEETTEEEEEESCCCTBSTTHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 69999999999999963897499999846955898885999888778998706852049999999999998626656221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 v~l~~YGDD~lisv~~~~~~~~i~~~l~~~G~~~T~~dKs~~~~~~~~~~~~FLKR~f~~~~~~~~~~~~~L~~~sI~~~ 400 (461)
T d1ra6a_ 321 LKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHES 400 (461)
T ss_dssp CEEEEETTEEEEEESSCCCHHHHHHHHHHTTCCEESTTTCSSCCCCCTTTCCBTTBEEEECSSCTTSEEEECCHHHHHHH
T ss_pred HEEEEECCCEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCEECCCCCCEEEECCCHHHHHHH
T ss_conf 01687268469991664489999999998698767400156777772588867552025158887089804899998560
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------------~ 1683 (1815)
=
T Consensus 401 l~W~r~~~~~~e~~~s~~~ea~~hg~e~y~~~~~~i~~~~~~~~~~~p~y~~~~~rw~~~f 461 (461)
T d1ra6a_ 401 IRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYDRWLDSF 461 (461)
T ss_dssp HTEESCGGGHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSHHHHTSCCCCHHHHHHHHHHHC
T ss_pred HEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 2586881349999999999998397899999999999998717877899899999998619
|
| >d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Poliovirus type 1, strain Mahoney [TaxId: 12080]
Probab=100.00 E-value=0 Score=34841.05 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~~~~~~~g~p~i~~p~KT~l~~S~~~~~~~~~~ePa~Ls~~DpR~~~~~~~~~~~k~~~~~~~~~~~~l~~~~~~ 80 (461)
T d1ra6a_ 1 GEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDFEEAIFSKYVGNKITEVDEYMKEAVDH 80 (461)
T ss_dssp CEEEEEEETTTTTCCCCCCCSSCSCEECTTTTTSCCCCEECCCSTTCTTCSSCHHHHHHTTCCCCCCCSCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCHHHEECCCCCCCCCCHHHHHHHHHH
T ss_conf 97216756565799865687880763677556899887699899999999999346445013589888861899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~t~~~Ai~G~~~~~~~~~~TS~G~P~~~~g~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lKD 160 (461)
T d1ra6a_ 81 YAGQLMSLDINTEQMCLEDAMYGTDGLEALDLSTSAGYPYVAMGKKKRDILNKQTRDTKEMQKLLDTYGINLPLVTYVKD 160 (461)
T ss_dssp HHHHHHTTCCCCSCCCHHHHHHCBTTBCCCCTTSCCCTTTTTTTCCHHHHCCTTTTCCHHHHHHHHHTCSCCCEEEEECC
T ss_pred HHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEHHHHC
T ss_conf 99877534788777778887456554124688988988773479870132288626699999998624888705326532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 E~~p~~Kv~~gKtR~f~~~p~~~~i~~r~~f~~f~~~~~~~~~~~~~~~vG~np~~~w~~l~~~l~~~~~~~DyS~FD~s 240 (461)
T d1ra6a_ 161 ELRSKTKVEQGKSRLIEASSLNDSVAMRMAFGNLYAAFHKNPGVITGSAVGCDPDLFWSKIPVLMEEKLFAFDYTGYDAS 240 (461)
T ss_dssp CEECHHHHHTTCCCEEEECCHHHHHHHHHHHHHHHHHHHHCTBTTTTBCTTCCHHHHTTTHHHHSCSEEECCEESSHHHH
T ss_pred CCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 76878981899973999799899999999999999999974888898664167456799999865377685514677886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~v~~~~~~il~~~~~~~~~~~i~~l~~~~~i~~~~vy~v~~GlPSG~~~T~iiNSi~N~i~i~~a~~~~~~~~~~~~ 320 (461)
T d1ra6a_ 241 LSPAWFEALKMVLEKIGFGDRVDYIDYLNHSHHLYKNKTYCVKGGMPSGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDH 320 (461)
T ss_dssp CCHHHHHHHHHHHHHTTTGGGTHHHHHHHEEEEEETTEEEEEESCCCTBSTTHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 69999999999999963897499999846955898885999888778998706852049999999999998626656221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 v~l~~YGDD~lisv~~~~~~~~i~~~l~~~G~~~T~~dKs~~~~~~~~~~~~FLKR~f~~~~~~~~~~~~~L~~~sI~~~ 400 (461)
T d1ra6a_ 321 LKMIAYGDDVIASYPHEVDASLLAQSGKDYGLTMTPADKSATFETVTWENVTFLKRFFRADEKYPFLIHPVMPMKEIHES 400 (461)
T ss_dssp CEEEEETTEEEEEESSCCCHHHHHHHHHHTTCCEESTTTCSSCCCCCTTTCCBTTBEEEECSSCTTSEEEECCHHHHHHH
T ss_pred HEEEEECCCEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCEECCCCCCEEEECCCHHHHHHH
T ss_conf 01687268469991664489999999998698767400156777772588867552025158887089804899998560
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 l~W~r~~~~~~e~~~s~~~ea~~hg~e~y~~~~~~i~~~~~~~~~~~p~y~~~~~rw~~~f 461 (461)
T d1ra6a_ 401 IRWTKDPRNTQDHVRSLCLLAWHNGEEEYNKFLAKIRSVPIGRALDLPEYSTLYDRWLDSF 461 (461)
T ss_dssp HTEESCGGGHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSHHHHTSCCCCHHHHHHHHHHHC
T ss_pred HEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 2586881349999999999998397899999999999998717877899899999998619
|
| >d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=34776.46 Aligned_cols=1 Identities=0% Similarity=-0.394 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 r~e~d~~g~~~vp~~~~~g~~t~r~~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~lG~i~~~~a~aI~~a~~ei~~ 80 (460)
T d1vdka_ 1 RIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQ 80 (460)
T ss_dssp CEEEETTEEEECCTTCCCCHHHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98607886720786564028799999763988887668899999999999999999998599999999999999999980
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~~~~~~~~~~vhp~~~vh~g~SsnD~~~Ta~~l~~~~~l~~~l~~~ 160 (460)
T d1vdka_ 81 GKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPA 160 (460)
T ss_dssp TTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85010376027541232124565028888777765112345554581268886155787899999999999899998777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 L~~L~~~L~~~A~~~~~t~m~GRTHlQ~A~PiT~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGGaAvGt~~~~~~~~~ 240 (460)
T d1vdka_ 161 VEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFG 240 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSCTTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 89999999998987148541326416415571088899999999988999999887666642477755445444540268
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~la~~lGl~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~Kia~Dir~l~s~e~~~i~E~~~~~~q~GSSiMP~ 320 (460)
T d1vdka_ 241 ELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPG 320 (460)
T ss_dssp HHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCCSCCSSCCTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEHHHHCCCCCCCCCCCCC
T ss_conf 99999999986869532578100113424679999999998889998889999864201110022110345677732235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~gl~vn~~rm~~~l~ 400 (460)
T d1vdka_ 321 KVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQ 400 (460)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHH
T ss_conf 67871789885253777777899999874797300124417777652389999999999999887408998999999997
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~s~~l~taLa~~ig~~~A~eiv~~A~~~~~~l~e~~~~~~~ls~eeld~~ldP~~~~~p~ 460 (460)
T d1vdka_ 401 KNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 460 (460)
T ss_dssp TCGGGGHHHHHHHCSHHHHTTTTTSCC--CCHHHHHHHTSSSCHHHHHHHCCHHHHHCCC
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
T ss_conf 286199997037999999999999999499899999881899999999857999857999
|
| >d7reqb1 c.1.19.1 (B:16-475) Methylmalonyl-CoA mutase beta subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Cobalamin (vitamin B12)-dependent enzymes family: Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain domain: Methylmalonyl-CoA mutase beta subunit, domain 1 species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=100.00 E-value=0 Score=34775.54 Aligned_cols=1 Identities=0% Similarity=-0.792 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~l~l~~~F~~~s~~~W~~~v~~~LkkG~~~e~~~~~~d~~~~L~~~T~eGi~i~PlYt~~D~~~~~~~PG~~Pf~R 80 (460)
T d7reqb1 1 LTPTTLSLAGDFPKATEEQWEREVEKVLNRGRPPEKQLTFAECLKRLTVHTVDGIDIVPMYRPKDAPKKLGYPGVAPFTR 80 (460)
T ss_dssp CCCSSCCSGGGSCCCCHHHHHHHHHHHHHTTCCTTSCCCHHHHHHHHCEECTTSCEECSCCCGGGSCSSCCCTTSTTCTT
T ss_pred CCCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHCCEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf 99665722007998789999999999984388710102421044413202888883788878000222358998888256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 g~~~~~~~~~~W~I~q~~~~~~~~~aN~~~l~~L~~G~t~l~l~~~~~~~~~~~l~~lL~~V~l~~~~v~l~~~~~~~~~ 160 (460)
T d7reqb1 81 GTTVRNGDMDAWDVRALHEDPDEKFTRKAILEGLERGVTSLLLRVDPDAIAPEHLDEVLSDVLLEMTKVEVFSRYDQGAA 160 (460)
T ss_dssp CSSCCCSCSCCSEEEEEECCSCHHHHHHHHHHHHHTTCCEEEEEBSTTSBCGGGHHHHTTTCCTTTCEEEEECSSCHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCHHHH
T ss_conf 77877778999815775568998999999999741798775224677645655588775014557541243136313789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~l~~~~~~~~~~~~~l~g~l~~Dpl~~~~~~g~~~~~~~~~d~~~~~~~~~p~~~~i~vdg~~~~~aGAt~~qELA~~ 240 (460)
T d7reqb1 161 AEALVSVYERSDKPAKDLALNLGLDPIGFAALQGTEPDLTVLGDWVRRLAKFSPDSRAVTIDANIYHNAGAGDVAELAWA 240 (460)
T ss_dssp HHHHHHHHHTCSSCGGGCCEEEEECHHHHHHHHTSCCCCTTHHHHHHHHTTSCTTCEEEEEETHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHCCCCHHHHHHHH
T ss_conf 99999999865998676056204474678875145630789999999998735466614744316753367899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 LA~~~~yl~~~~~~g~~~~~~~~~i~f~~s~g~~~F~eIAKlRA~R~LWa~i~~~~g~~~~~~~~~i~a~TS~~~~t~~d 320 (460)
T d7reqb1 241 LATGAEYVRALVEQGFTATEAFDTINFRVTATHDQFLTIARLRALREAWARIGEVFGVDEDKRGARQNAITSWRELTRED 320 (460)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCEEEEECSTTCCSSS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEECCCCCCCCCC
T ss_conf 99999999999873898888734269999648759999999999999999999983975301023432024631144578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 p~~NllR~T~ea~aA~lGGadsl~~~p~d~~~~~~~~~~s~RiArN~q~IL~eEs~l~~V~DPa~GSyyiE~LT~~la~~ 400 (460)
T d7reqb1 321 PYVNILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAEEVNIGRVNDPAGGSYYVESLTRSLADA 400 (460)
T ss_dssp TTHHHHHHHHHHHHHHHTTCSEEECCCTTTTTCEESSSHHHHHHHHHHHHHHHTSCTTSSSCTTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 40069999999999997134420136705331799638999999999999999628774667676869999999999999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 Aw~~f~~IE~~GG~~~al~~g~iq~~i~~~~~~r~~~~~~~k~~lvGvN~ypn~~e~~~e 460 (460)
T d7reqb1 401 AWKEFQEVEKLGGMSKAVMTEHVTKVLDACNAERAKRLANRKQPITAVSEFPMIGARSIE 460 (460)
T ss_dssp HHHHHHHHHHTTCHHHHHHSSHHHHHHHHHHHHHHHHHHTTSSCCBTTTBSCCTTCCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 999999999759899999857299999999999999997799869984279998878898
|
| >d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=34774.86 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 r~e~d~~g~~~vp~~~~~g~~t~r~~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~lG~i~~~~a~aI~~a~~ei~~ 80 (460)
T d1vdka_ 1 RIERDTMGEVRVPADKYWGAQTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQ 80 (460)
T ss_dssp CEEEETTEEEECCTTCCCCHHHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98607886720786564028799999763988887668899999999999999999998599999999999999999980
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~~~~~~~~~~vhp~~~vh~g~SsnD~~~Ta~~l~~~~~l~~~l~~~ 160 (460)
T d1vdka_ 81 GKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPA 160 (460)
T ss_dssp TTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85010376027541232124565028888777765112345554581268886155787899999999999899998777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 L~~L~~~L~~~A~~~~~t~m~GRTHlQ~A~PiT~G~~~a~~~~~l~r~~~RL~~~~~~l~~~~lGGaAvGt~~~~~~~~~ 240 (460)
T d1vdka_ 161 VEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFG 240 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGGGEECTTCTTTSSCTTSCTTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 89999999998987148541326416415571088899999999988999999887666642477755445444540268
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~la~~lGl~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~Kia~Dir~l~s~e~~~i~E~~~~~~q~GSSiMP~ 320 (460)
T d1vdka_ 241 ELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPG 320 (460)
T ss_dssp HHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSEECCCCSCCSSCCTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEHHHHCCCCCCCCCCCCC
T ss_conf 99999999986869532578100113424679999999998889998889999864201110022110345677732235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~gl~vn~~rm~~~l~ 400 (460)
T d1vdka_ 321 KVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQ 400 (460)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHH
T ss_conf 67871789885253777777899999874797300124417777652389999999999999887408998999999997
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~s~~l~taLa~~ig~~~A~eiv~~A~~~~~~l~e~~~~~~~ls~eeld~~ldP~~~~~p~ 460 (460)
T d1vdka_ 401 KNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLAKPH 460 (460)
T ss_dssp TCGGGGHHHHHHHCSHHHHTTTTTSCC--CCHHHHHHHTSSSCHHHHHHHCCHHHHHCCC
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHCCHHHHCCCC
T ss_conf 286199997037999999999999999499899999881899999999857999857999
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34773.21 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99877798208958868999999767799999828999988999999999853999888979598597289999999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 160 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 37887788778887754322101211000034320024443320234555544301355433322222232220011001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~ 240 (460)
T d1z7xw1 161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240 (460)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 12223333222223322221245555432343321122100124112454210110122332222221001002112233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~ 320 (460)
T d1z7xw1 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 320 (460)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf 44201100011111110000134543321233433221112343334444433322456421110123334443333233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 400 (460)
T d1z7xw1 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCHHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 34102334432133221101111320121013576640011122045677788989799797599999999996299889
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~~ 460 (460)
T d1z7xw1 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460 (460)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEEC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 898999969879999999999747886678989898789899999999997599989959
|
| >d7reqb1 c.1.19.1 (B:16-475) Methylmalonyl-CoA mutase beta subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Cobalamin (vitamin B12)-dependent enzymes family: Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain domain: Methylmalonyl-CoA mutase beta subunit, domain 1 species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=100.00 E-value=0 Score=34773.13 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~l~l~~~F~~~s~~~W~~~v~~~LkkG~~~e~~~~~~d~~~~L~~~T~eGi~i~PlYt~~D~~~~~~~PG~~Pf~R 80 (460)
T d7reqb1 1 LTPTTLSLAGDFPKATEEQWEREVEKVLNRGRPPEKQLTFAECLKRLTVHTVDGIDIVPMYRPKDAPKKLGYPGVAPFTR 80 (460)
T ss_dssp CCCSSCCSGGGSCCCCHHHHHHHHHHHHHTTCCTTSCCCHHHHHHHHCEECTTSCEECSCCCGGGSCSSCCCTTSTTCTT
T ss_pred CCCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHCCEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf 99665722007998789999999999984388710102421044413202888883788878000222358998888256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 g~~~~~~~~~~W~I~q~~~~~~~~~aN~~~l~~L~~G~t~l~l~~~~~~~~~~~l~~lL~~V~l~~~~v~l~~~~~~~~~ 160 (460)
T d7reqb1 81 GTTVRNGDMDAWDVRALHEDPDEKFTRKAILEGLERGVTSLLLRVDPDAIAPEHLDEVLSDVLLEMTKVEVFSRYDQGAA 160 (460)
T ss_dssp CSSCCCSCSCCSEEEEEECCSCHHHHHHHHHHHHHTTCCEEEEEBSTTSBCGGGHHHHTTTCCTTTCEEEEECSSCHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCHHHH
T ss_conf 77877778999815775568998999999999741798775224677645655588775014557541243136313789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~l~~~~~~~~~~~~~l~g~l~~Dpl~~~~~~g~~~~~~~~~d~~~~~~~~~p~~~~i~vdg~~~~~aGAt~~qELA~~ 240 (460)
T d7reqb1 161 AEALVSVYERSDKPAKDLALNLGLDPIGFAALQGTEPDLTVLGDWVRRLAKFSPDSRAVTIDANIYHNAGAGDVAELAWA 240 (460)
T ss_dssp HHHHHHHHHTCSSCGGGCCEEEEECHHHHHHHHTSCCCCTTHHHHHHHHTTSCTTCEEEEEETHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHCCCCHHHHHHHH
T ss_conf 99999999865998676056204474678875145630789999999998735466614744316753367899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 LA~~~~yl~~~~~~g~~~~~~~~~i~f~~s~g~~~F~eIAKlRA~R~LWa~i~~~~g~~~~~~~~~i~a~TS~~~~t~~d 320 (460)
T d7reqb1 241 LATGAEYVRALVEQGFTATEAFDTINFRVTATHDQFLTIARLRALREAWARIGEVFGVDEDKRGARQNAITSWRELTRED 320 (460)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCEEEEECSTTCCSSS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEECCCCCCCCCC
T ss_conf 99999999999873898888734269999648759999999999999999999983975301023432024631144578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 p~~NllR~T~ea~aA~lGGadsl~~~p~d~~~~~~~~~~s~RiArN~q~IL~eEs~l~~V~DPa~GSyyiE~LT~~la~~ 400 (460)
T d7reqb1 321 PYVNILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAEEVNIGRVNDPAGGSYYVESLTRSLADA 400 (460)
T ss_dssp TTHHHHHHHHHHHHHHHTTCSEEECCCTTTTTCEESSSHHHHHHHHHHHHHHHTSCTTSSSCTTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 40069999999999997134420136705331799638999999999999999628774667676869999999999999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 Aw~~f~~IE~~GG~~~al~~g~iq~~i~~~~~~r~~~~~~~k~~lvGvN~ypn~~e~~~e 460 (460)
T d7reqb1 401 AWKEFQEVEKLGGMSKAVMTEHVTKVLDACNAERAKRLANRKQPITAVSEFPMIGARSIE 460 (460)
T ss_dssp HHHHHHHHHHTTCHHHHHHSSHHHHHHHHHHHHHHHHHHTTSSCCBTTTBSCCTTCCCCC
T ss_pred HHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 999999999759899999857299999999999999997799869984279998878898
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34769.64 Aligned_cols=1 Identities=0% Similarity=0.504 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99877798208958868999999767799999828999988999999999853999888979598597289999999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 160 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 37887788778887754322101211000034320024443320234555544301355433322222232220011001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~ 240 (460)
T d1z7xw1 161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240 (460)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 12223333222223322221245555432343321122100124112454210110122332222221001002112233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~ 320 (460)
T d1z7xw1 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 320 (460)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf 44201100011111110000134543321233433221112343334444433322456421110123334443333233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 400 (460)
T d1z7xw1 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCHHHHHHHHCCCCCCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 34102334432133221101111320121013576640011122045677788989799797599999999996299889
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~~ 460 (460)
T d1z7xw1 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460 (460)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEEC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 898999969879999999999747886678989898789899999999997599989959
|
| >d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Endo/exocellulase:cellobiose E-4, N-terminal domain species: Thermomonospora fusca [TaxId: 2021]
Probab=100.00 E-value=0 Score=34769.19 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~Y~~al~~sl~ff~~QRsG~~p~~~~~~wr~~s~~~Dg~~~~~DvsGGWyDAGD~~KY~~~~a~~~~~L~~a~~~~ 80 (460)
T d1tf4a1 1 EPAFNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGFPMAFTATMLAWGAIES 80 (460)
T ss_dssp CCSSCHHHHHHHHHHHHHHTBCBSCCTTCCCTTCCCBCTTTTGGGTSCCCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHC
T ss_conf 99887999999999998872684898656778876565777654767898872248875600651799999999999977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~pdlLdE~~wglD~llkmq~~~g~~y~qvgdg~~dh~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~aAal 160 (460)
T d1tf4a1 81 PEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAM 160 (460)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTCSBTTBEEEEESCHHHHHHCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHH
T ss_conf 67562379837899999999999996456898589982578754436678767787787205307896099999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 A~as~v~~~~d~~~A~~~l~aA~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~De~~wAAaeLy~aTG~~~Y~~~a~~~~ 240 (460)
T d1tf4a1 161 AASSIVFADDDPAYAATLVQHAKQLYTFADTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEY 240 (460)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHSCCCGGGTSTTHHHHCCSSCSHHHHHHHHHHHHHHHCCHHHHHHHHHHG
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99988612569999999999999999999977887888888887678866612499999999998869899999999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WGsn~~~~ 320 (460)
T d1tf4a1 241 DFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGKQKYIDDANRWLDYWTVGVNGQRVPYSPGGMAVLDTWGALRYAA 320 (460)
T ss_dssp GGSCBCTTSSCBCCSSCCSSSCCHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCBTTBCCCBCTTSCBCCCSSSHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf 63155545665543312465410499999988986566899999999999754025565775898651047874389999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 n~a~~~~~a~~~~~~~~~~~~y~~~A~~qldylLG~Np~~~SyVtG~G~~~p~~pHHR~s~~~~~~~~~~~~p~~~~l~G 400 (460)
T d1tf4a1 321 NTAFVALVYAKVIDDPVRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTDSIASPAENRHVLYG 400 (460)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTCSTTCCCSBTTSSSSCCSCCSCHHHHTCSSSCTTSSSSCSSCCTT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999999998720667899999999970021056698996887068899989986745468986556789888887623
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~lvGGPn~~~~~y~D~~~~y~~nEvai~~NA~lv~~la~l~~~~~~~~~~~~~~~~~~~~ 460 (460)
T d1tf4a1 401 ALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGGTPLADFPPTEEPDG 460 (460)
T ss_dssp CBCCCCSSTTCCCCCCTTCTTTTCCCGGGGHHHHHHHHHHHHHHCCCCCSSCSCCCCCSS
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 684598987778371721054414688877999999999999649998999999899998
|
| >d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16, HRV-16 [TaxId: 31708]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Human rhinovirus 16, HRV-16 [TaxId: 31708]
Probab=100.00 E-value=0 Score=34766.23 Aligned_cols=1 Identities=0% Similarity=-1.258 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~i~~p~kT~l~~s~~~~~~p~~~ePa~L~~~DpR~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 80 (460)
T d1xr7a_ 1 GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAH 80 (460)
T ss_dssp CEEEEEEEGGGGTCCCCCCCCSCCCEECTTTTTSCCCCEECCCSTTCTTCCSCHHHHHGGGCCCCCCCCCCHHHHHHHHH
T ss_pred CEEEEECCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 92378512142189877788883670566566879881489989989999988357876255789999966999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~t~~~ai~Gi~~~~~m~~~TS~G~Py~~~g~kkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lKD 160 (460)
T d1xr7a_ 81 YSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYGVDLPMITFLKD 160 (460)
T ss_dssp HHHHHHTTCCCCSCCCHHHHHHCBTTBCCCCSSSCCCTTTTTTTCCHHHHCBTTTTBCHHHHHHHHHHCSCCCEEEEECC
T ss_pred HHHHHHHCCCCCCCCCHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99866523688787768874047651101588999998850269975401678741499999999715888755778864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 E~~~~~Kv~~gKtR~f~~~p~~~~i~~r~~~~~~~~~~~~~~~~~~~~~vG~n~~~~w~~l~~~l~~~~~~~~DyS~FDs 240 (460)
T d1xr7a_ 161 ELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPLMLDGDCIMAFDYTNYDG 240 (460)
T ss_dssp CEECTHHHHTTCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCBTTTTBCTTCCHHHHHHHHHHHSCSSEEEEEEESSHHH
T ss_pred CCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf 47888884899955999488899999999999999999972687787145788302599999866799378440212578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 s~~~~i~~~~~~il~~~~~~~~l~~~l~~~~~~~~~~~~~v~gGlPSG~p~T~i~NSi~N~i~i~~a~~~~~~~~~~~~~ 320 (460)
T d1xr7a_ 241 SIHPIWFKALGMVLDNLSFNPTLINRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKL 320 (460)
T ss_dssp HCCHHHHHHHHHHHHHTTSCSSTTHHHHEEEEEETTEEEEEESSCCTTSTTHHHHHHHHHHHHHHHHHHHHCSSCCGGGC
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEECCEEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 67999999999999855898388762056237847858999253468886157642399999999999997154563504
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~YGDD~lisv~~~~~~~~i~~~l~~~G~~~T~~dKs~~~~~~~~~~~~FLKR~f~~~~~~~~~~~~~L~~~sI~~~l 400 (460)
T d1xr7a_ 321 KIIAYGDDVIFSYKYKLDMEAIAKEGQKYGLTITPADKSSEFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESI 400 (460)
T ss_dssp EEEEETTEEEEEESSCCCHHHHHHTTGGGTCCEEESTTCSSCCCBCTTTCCBTTBEEEECSSCTTSEEEECCHHHHHHHH
T ss_pred EEEEECCCCEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCEECCCCCEEEEECCCHHHHHHHH
T ss_conf 68996696269807866799999999980988664545777434423667586863778799875897117999988745
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------~ 1683 (1815)
=
T Consensus 401 ~W~r~~~~~~e~l~s~~~ea~~hg~e~y~~~~~~i~~~~~~~~~~~P~y~~~~~~w~~~f 460 (460)
T d1xr7a_ 401 RWTKKPSQMQEHVLSLCHLMWHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF 460 (460)
T ss_dssp TEESCGGGHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSHHHHSSCCCCHHHHHHHHHTTC
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 566885289999999999998188899999999999998637615799899999999709
|
| >d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Human rhinovirus 14, HRV-14 [TaxId: 12131]
Probab=100.00 E-value=0 Score=34765.57 Aligned_cols=1 Identities=0% Similarity=-1.258 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~p~~~p~KT~~~~S~~~~~~p~~~ePa~L~~~DpR~~~~~~~~~~~k~~~~~~~~~~~~~~~a~~~ 80 (460)
T d1xr5a_ 1 GQVIARHKVREFNINPVNTPTKSKLHPSVFYDVFPGDKEPAVLSDNDPRLEVKLTESLFSKYKGNVNTEPTENMLVAVDH 80 (460)
T ss_dssp CEEEEEECHHHHTCCCCCCCCSCCCEECGGGTTSCCCCEECCCSSCCTTCCSCHHHHHHTTCCCCCCCSCCHHHHHHHHH
T ss_pred CCEEEEEEHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 92278643321398763688884455678777899887789999989899988027874477888888975889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~lt~~~ai~Gi~~~~~~~~~TS~G~P~~~~g~kk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lKD 160 (460)
T d1xr5a_ 81 YAGQLLSLDIPTSELTLKEALYGVDGLEPIDITTSAGFPYVSLGIKKRDILNKETQDTEKMKFYLDKYGIDLPLVTYIKD 160 (460)
T ss_dssp HHHHHHTTCCCCCCCCHHHHHHCCSSSCCCCTTSCCCTTGGGGSCCHHHHCCTTTTCCHHHHHHHHHHCSSCCEEEEECC
T ss_pred HHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 99998732799877879998526553224678988998641369878876178602689999998478998513535505
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 E~~p~eKv~~gKtR~f~~~p~~~~i~~r~~~~~f~~~~~~~~~~~~~~~vg~~~~~~w~~l~~~l~~~~~~~DyS~FD~s 240 (460)
T d1xr5a_ 161 ELRSVDKVRLGKSRLIEASSLNDSVNMRMKLGNLYKAFHQNPGVLTGSAVGCDPDVFWSVIPCLMDGHLMAFDYSNFDAS 240 (460)
T ss_dssp CEECHHHHHTTCCCEEEECCHHHHHHHTTTSHHHHHHHHHCTBTTTTBCSSCCHHHHGGGHHHHCCSCCEEEEESSTGGG
T ss_pred CCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 54887770689973999798699999999999999999866998888365737777899999864798773444656686
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~il~~~~~~~~~l~~~l~~~~~~~~~~vy~v~gGlPSG~p~Tsi~NSi~N~i~i~~a~~~~~~~~~~~~v 320 (460)
T d1xr5a_ 241 LSPVWFVCLEKVLTKLGFAGSSLIQSICNTHHIFRDEIYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKL 320 (460)
T ss_dssp CCHHHHHHHHHHHHHHTCTTTTHHHHHHSEEEECSSSEEEEESCCCTTSSSHHHHHHHHHHHHHHHHHHHHCSSCCGGGC
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 89999999999999844452899973165578638808997176579997446204599999999999997078306555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~YGDD~lisv~~~~~~~~~~~~~~~~G~~~T~~dK~~~~~~~~l~~~~FLKR~f~~~~~~~~~~~~~L~~~sI~~~l 400 (460)
T d1xr5a_ 321 KILAYGDDLIVSYPYELDPQVLATLGKNYGLTITPPDKSETFTKMTWENLTFLKRYFKPDQQFPFLVHPVMPMKDIHESI 400 (460)
T ss_dssp EEEEETTEEEEECSSCCCHHHHHHHHTTTTCCEECCSSCSSCCCCCTTTCCBTTBEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred HHHHCCCCEEEECCHHHCHHHHHHHHHHCCCEECHHHHCCCCCCCCCCCCCEECCCCEECCCCCEEEEEECCHHHHHHHH
T ss_conf 55433771699716110789999999986987166884776678754778065862453688770899508999987743
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------~ 1683 (1815)
=
T Consensus 401 ~w~r~~~~~~~~~~sa~~ea~~hg~~~y~~~~~~i~~~~~~~~~~~P~y~~~~~~wl~~f 460 (460)
T d1xr5a_ 401 RWTKDPKNTQDHVRSLCMLAWHSGEKEYNEFIQKIRTTDIGKCLILPEYSVLRRRWLDLF 460 (460)
T ss_dssp TEESSTTTHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSHHHHHSCCCCHHHHHHHHHHTC
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 266881379999999999998576999999999999987536577899999999998619
|
| >d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Endo/exocellulase:cellobiose E-4, N-terminal domain species: Thermomonospora fusca [TaxId: 2021]
Probab=100.00 E-value=0 Score=34766.23 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~Y~~al~~sl~ff~~QRsG~~p~~~~~~wr~~s~~~Dg~~~~~DvsGGWyDAGD~~KY~~~~a~~~~~L~~a~~~~ 80 (460)
T d1tf4a1 1 EPAFNYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGFPMAFTATMLAWGAIES 80 (460)
T ss_dssp CCSSCHHHHHHHHHHHHHHTBCBSCCTTCCCTTCCCBCTTTTGGGTSCCCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHC
T ss_conf 99887999999999998872684898656778876565777654767898872248875600651799999999999977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~pdlLdE~~wglD~llkmq~~~g~~y~qvgdg~~dh~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~aAal 160 (460)
T d1tf4a1 81 PEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAM 160 (460)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTCSBTTBEEEEESCHHHHHHCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHH
T ss_conf 67562379837899999999999996456898589982578754436678767787787205307896099999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 A~as~v~~~~d~~~A~~~l~aA~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~De~~wAAaeLy~aTG~~~Y~~~a~~~~ 240 (460)
T d1tf4a1 161 AASSIVFADDDPAYAATLVQHAKQLYTFADTYRGVYSDCVPAGAFYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYEY 240 (460)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHSCCCGGGTSTTHHHHCCSSCSHHHHHHHHHHHHHHHCCHHHHHHHHHHG
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99988612569999999999999999999977887888888887678866612499999999998869899999999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WGsn~~~~ 320 (460)
T d1tf4a1 241 DFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGKQKYIDDANRWLDYWTVGVNGQRVPYSPGGMAVLDTWGALRYAA 320 (460)
T ss_dssp GGSCBCTTSSCBCCSSCCSSSCCHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTCBTTBCCCBCTTSCBCCCSSSHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHH
T ss_conf 63155545665543312465410499999988986566899999999999754025565775898651047874389999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 n~a~~~~~a~~~~~~~~~~~~y~~~A~~qldylLG~Np~~~SyVtG~G~~~p~~pHHR~s~~~~~~~~~~~~p~~~~l~G 400 (460)
T d1tf4a1 321 NTAFVALVYAKVIDDPVRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTDSIASPAENRHVLYG 400 (460)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTCSTTCCCSBTTSSSSCCSCCSCHHHHTCSSSCTTSSSSCSSCCTT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999999998720667899999999970021056698996887068899989986745468986556789888887623
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~lvGGPn~~~~~y~D~~~~y~~nEvai~~NA~lv~~la~l~~~~~~~~~~~~~~~~~~~~ 460 (460)
T d1tf4a1 401 ALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGGTPLADFPPTEEPDG 460 (460)
T ss_dssp CBCCCCSSTTCCCCCCTTCTTTTCCCGGGGHHHHHHHHHHHHHHCCCCCSSCSCCCCCSS
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 684598987778371721054414688877999999999999649998999999899998
|
| >d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16, HRV-16 [TaxId: 31708]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Human rhinovirus 16, HRV-16 [TaxId: 31708]
Probab=100.00 E-value=0 Score=34764.33 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~i~~p~kT~l~~s~~~~~~p~~~ePa~L~~~DpR~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 80 (460)
T d1xr7a_ 1 GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAH 80 (460)
T ss_dssp CEEEEEEEGGGGTCCCCCCCCSCCCEECTTTTTSCCCCEECCCSTTCTTCCSCHHHHHGGGCCCCCCCCCCHHHHHHHHH
T ss_pred CEEEEECCHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 92378512142189877788883670566566879881489989989999988357876255789999966999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~t~~~ai~Gi~~~~~m~~~TS~G~Py~~~g~kkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lKD 160 (460)
T d1xr7a_ 81 YSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYGVDLPMITFLKD 160 (460)
T ss_dssp HHHHHHTTCCCCSCCCHHHHHHCBTTBCCCCSSSCCCTTTTTTTCCHHHHCBTTTTBCHHHHHHHHHHCSCCCEEEEECC
T ss_pred HHHHHHHCCCCCCCCCHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99866523688787768874047651101588999998850269975401678741499999999715888755778864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 E~~~~~Kv~~gKtR~f~~~p~~~~i~~r~~~~~~~~~~~~~~~~~~~~~vG~n~~~~w~~l~~~l~~~~~~~~DyS~FDs 240 (460)
T d1xr7a_ 161 ELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPLMLDGDCIMAFDYTNYDG 240 (460)
T ss_dssp CEECTHHHHTTCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCBTTTTBCTTCCHHHHHHHHHHHSCSSEEEEEEESSHHH
T ss_pred CCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf 47888884899955999488899999999999999999972687787145788302599999866799378440212578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 s~~~~i~~~~~~il~~~~~~~~l~~~l~~~~~~~~~~~~~v~gGlPSG~p~T~i~NSi~N~i~i~~a~~~~~~~~~~~~~ 320 (460)
T d1xr7a_ 241 SIHPIWFKALGMVLDNLSFNPTLINRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKL 320 (460)
T ss_dssp HCCHHHHHHHHHHHHHTTSCSSTTHHHHEEEEEETTEEEEEESSCCTTSTTHHHHHHHHHHHHHHHHHHHHCSSCCGGGC
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEECCEEEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 67999999999999855898388762056237847858999253468886157642399999999999997154563504
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~YGDD~lisv~~~~~~~~i~~~l~~~G~~~T~~dKs~~~~~~~~~~~~FLKR~f~~~~~~~~~~~~~L~~~sI~~~l 400 (460)
T d1xr7a_ 321 KIIAYGDDVIFSYKYKLDMEAIAKEGQKYGLTITPADKSSEFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESI 400 (460)
T ss_dssp EEEEETTEEEEEESSCCCHHHHHHTTGGGTCCEEESTTCSSCCCBCTTTCCBTTBEEEECSSCTTSEEEECCHHHHHHHH
T ss_pred EEEEECCCCEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEECCCCEECCCCCEEEEECCCHHHHHHHH
T ss_conf 68996696269807866799999999980988664545777434423667586863778799875897117999988745
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~W~r~~~~~~e~l~s~~~ea~~hg~e~y~~~~~~i~~~~~~~~~~~P~y~~~~~~w~~~f 460 (460)
T d1xr7a_ 401 RWTKKPSQMQEHVLSLCHLMWHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF 460 (460)
T ss_dssp TEESCGGGHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSHHHHSSCCCCHHHHHHHHHTTC
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 566885289999999999998188899999999999998637615799899999999709
|
| >d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: RNA-dependent RNA-polymerase domain: Viral RNA polymerase species: Human rhinovirus 14, HRV-14 [TaxId: 12131]
Probab=100.00 E-value=0 Score=34763.73 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~~~~~~~~~~~~~p~~~p~KT~~~~S~~~~~~p~~~ePa~L~~~DpR~~~~~~~~~~~k~~~~~~~~~~~~~~~a~~~ 80 (460)
T d1xr5a_ 1 GQVIARHKVREFNINPVNTPTKSKLHPSVFYDVFPGDKEPAVLSDNDPRLEVKLTESLFSKYKGNVNTEPTENMLVAVDH 80 (460)
T ss_dssp CEEEEEECHHHHTCCCCCCCCSCCCEECGGGTTSCCCCEECCCSSCCTTCCSCHHHHHHTTCCCCCCCSCCHHHHHHHHH
T ss_pred CCEEEEEEHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 92278643321398763688884455678777899887789999989899988027874477888888975889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~lt~~~ai~Gi~~~~~~~~~TS~G~P~~~~g~kk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lKD 160 (460)
T d1xr5a_ 81 YAGQLLSLDIPTSELTLKEALYGVDGLEPIDITTSAGFPYVSLGIKKRDILNKETQDTEKMKFYLDKYGIDLPLVTYIKD 160 (460)
T ss_dssp HHHHHHTTCCCCCCCCHHHHHHCCSSSCCCCTTSCCCTTGGGGSCCHHHHCCTTTTCCHHHHHHHHHHCSSCCEEEEECC
T ss_pred HHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 99998732799877879998526553224678988998641369878876178602689999998478998513535505
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 E~~p~eKv~~gKtR~f~~~p~~~~i~~r~~~~~f~~~~~~~~~~~~~~~vg~~~~~~w~~l~~~l~~~~~~~DyS~FD~s 240 (460)
T d1xr5a_ 161 ELRSVDKVRLGKSRLIEASSLNDSVNMRMKLGNLYKAFHQNPGVLTGSAVGCDPDVFWSVIPCLMDGHLMAFDYSNFDAS 240 (460)
T ss_dssp CEECHHHHHTTCCCEEEECCHHHHHHHTTTSHHHHHHHHHCTBTTTTBCSSCCHHHHGGGHHHHCCSCCEEEEESSTGGG
T ss_pred CCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 54887770689973999798699999999999999999866998888365737777899999864798773444656686
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~il~~~~~~~~~l~~~l~~~~~~~~~~vy~v~gGlPSG~p~Tsi~NSi~N~i~i~~a~~~~~~~~~~~~v 320 (460)
T d1xr5a_ 241 LSPVWFVCLEKVLTKLGFAGSSLIQSICNTHHIFRDEIYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKL 320 (460)
T ss_dssp CCHHHHHHHHHHHHHHTCTTTTHHHHHHSEEEECSSSEEEEESCCCTTSSSHHHHHHHHHHHHHHHHHHHHCSSCCGGGC
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 89999999999999844452899973165578638808997176579997446204599999999999997078306555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~YGDD~lisv~~~~~~~~~~~~~~~~G~~~T~~dK~~~~~~~~l~~~~FLKR~f~~~~~~~~~~~~~L~~~sI~~~l 400 (460)
T d1xr5a_ 321 KILAYGDDLIVSYPYELDPQVLATLGKNYGLTITPPDKSETFTKMTWENLTFLKRYFKPDQQFPFLVHPVMPMKDIHESI 400 (460)
T ss_dssp EEEEETTEEEEECSSCCCHHHHHHHHTTTTCCEECCSSCSSCCCCCTTTCCBTTBEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred HHHHCCCCEEEECCHHHCHHHHHHHHHHCCCEECHHHHCCCCCCCCCCCCCEECCCCEECCCCCEEEEEECCHHHHHHHH
T ss_conf 55433771699716110789999999986987166884776678754778065862453688770899508999987743
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~w~r~~~~~~~~~~sa~~ea~~hg~~~y~~~~~~i~~~~~~~~~~~P~y~~~~~~wl~~f 460 (460)
T d1xr5a_ 401 RWTKDPKNTQDHVRSLCMLAWHSGEKEYNEFIQKIRTTDIGKCLILPEYSVLRRRWLDLF 460 (460)
T ss_dssp TEESSTTTHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSHHHHHSCCCCHHHHHHHHHHTC
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
T ss_conf 266881379999999999998576999999999999987536577899999999998619
|
| >d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast (Pichia pastoris) [TaxId: 4922]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Amine oxidase catalytic domain family: Amine oxidase catalytic domain domain: Lysyl oxidase PplO, domain 3 species: Yeast (Pichia pastoris) [TaxId: 4922]
Probab=100.00 E-value=0 Score=34771.51 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~ld~~~~p~i~QP~G~sF~v~g~~~~V~W~~W~f~vgf~~reGlvL~dv~~~gr~i~Yr~SlsEm~VpYg~~~p~~~~~~ 80 (460)
T d1w7ca1 1 HLDDRKSPRLVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTF 80 (460)
T ss_dssp TTTTSCCCCCCCTTCCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEECCSSTTGGGCE
T ss_pred CCCCCCCCEEECCCCCCEEEECCCCEEEECCCEEEEECCCCCCCEEEEEEECCEEEEEEEEEEEEEEECCCCCCHHHHEE
T ss_conf 98767998073889998899798006984597899965888771898665999888998772368960699893244102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~d~~yG~G~~~sL~~G~DCpg~i~y~d~~~~~~~~~~~~~~~~ci~e~~~~~~l~kH~~~~~~~v~r~r~LVvr~i~TV 160 (460)
T d1w7ca1 81 YSDISYGVGNRFSLVPGYDCPSTAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTI 160 (460)
T ss_dssp EEHHHHCSSSSCCCCBTTTBCTTCEEEEEEEEETTEEEEEEEEEEEEEEECSSCSEEEEETTEEEEECCEEEEEEEEECC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCEEEEEEEEEE
T ss_conf 33345466543224478999986579856450578875545427999971798455204678662363336999999996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 gNYdY~~~w~F~qdGsIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~g~~HqH~f~~RlD~dIDG~~Nsv~~~~~~~~ 240 (460)
T d1w7ca1 161 GNYDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASQYVMKDV 240 (460)
T ss_dssp CC-CEEEEEEECTTSCEEEEEEECBCCCCEECCTTTCGGGCCEEETTEECCCEEEEEEEEEEECTTSSEEEEEEEEEEEE
T ss_pred ECCCEEEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCCEECCCCCCHHCEEEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 42008999999358679999984545766512888768877552566420001117899960466798783369872146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~p~~~g~~~~~~~~~~~~~~~e~~a~~~~~~~~~r~~~v~n~~k~n~~G~pvgYkl~p~~~~~~~~~~~~~~~~~ra 320 (460)
T d1w7ca1 241 DVEYPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQ 320 (460)
T ss_dssp EEECTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEEEEEEEEECTTSCEEEEEEEECTTCCCCSCSSCTTCSSSC
T ss_pred CCCCCCCCCCEEEEEEEEEEEECCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 76788888854444888776513301220025766831899838988787888214686368776533587664303333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~fa~~~lwVT~y~d~E~~asg~~~~q~~~~~~~~~~~~~~de~I~n~DiV~W~t~G~~HvPr~ED~P~tVMP~e~~gf~L 400 (460)
T d1w7ca1 321 NWARSNLFLTKHKDTELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFML 400 (460)
T ss_dssp GGGGSSEEEEECCTTCCCSCCTTCTTCSSSCSCCGGGGCSCCBCTTEEEEEEEEEEEEECCCGGGSSCBCSSSSEEEEEE
T ss_pred HHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCEEEEEE
T ss_conf 36244375755777641777666546778886675311389963288279999158757998556788765666577999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1683 -----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~P~nFF~~nPald~p~~~~~~~~~~~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~g~~~~ 460 (460)
T d1w7ca1 401 TPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGVEVAEPNFEDYTYGRGTR 460 (460)
T ss_dssp EEESSSSSCTTTTCSSEEEEEECTTTCCEEEECTTCCCSCCBCCCCCCCGGGCCCSSCEE
T ss_pred ECCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 888888889553577325871377887111011278777644301378888865667679
|
| >d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast (Pichia pastoris) [TaxId: 4922]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Amine oxidase catalytic domain family: Amine oxidase catalytic domain domain: Lysyl oxidase PplO, domain 3 species: Yeast (Pichia pastoris) [TaxId: 4922]
Probab=100.00 E-value=0 Score=34769.36 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~ld~~~~p~i~QP~G~sF~v~g~~~~V~W~~W~f~vgf~~reGlvL~dv~~~gr~i~Yr~SlsEm~VpYg~~~p~~~~~~ 80 (460)
T d1w7ca1 1 HLDDRKSPRLVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTF 80 (460)
T ss_dssp TTTTSCCCCCCCTTCCCCEEETTTTEEEETTEEEEEEEETTTEEEEEEEEETTEEEEEEEEEEEEEEEECCSSTTGGGCE
T ss_pred CCCCCCCCEEECCCCCCEEEECCCCEEEECCCEEEEECCCCCCCEEEEEEECCEEEEEEEEEEEEEEECCCCCCHHHHEE
T ss_conf 98767998073889998899798006984597899965888771898665999888998772368960699893244102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~d~~yG~G~~~sL~~G~DCpg~i~y~d~~~~~~~~~~~~~~~~ci~e~~~~~~l~kH~~~~~~~v~r~r~LVvr~i~TV 160 (460)
T d1w7ca1 81 YSDISYGVGNRFSLVPGYDCPSTAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTI 160 (460)
T ss_dssp EEHHHHCSSSSCCCCBTTTBCTTCEEEEEEEEETTEEEEEEEEEEEEEEECSSCSEEEEETTEEEEECCEEEEEEEEECC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCEEEEEEEEEE
T ss_conf 33345466543224478999986579856450578875545427999971798455204678662363336999999996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 gNYdY~~~w~F~qdGsIe~ev~aTGil~t~~~~~~~~~~yGt~V~p~v~g~~HqH~f~~RlD~dIDG~~Nsv~~~~~~~~ 240 (460)
T d1w7ca1 161 GNYDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASQYVMKDV 240 (460)
T ss_dssp CC-CEEEEEEECTTSCEEEEEEECBCCCCEECCTTTCGGGCCEEETTEECCCEEEEEEEEEEECTTSSEEEEEEEEEEEE
T ss_pred ECCCEEEEEEEECCCEEEEEEEECCEEEEEECCCCCCCCCCCEECCCCCCHHCEEEEEEEECCCCCCCCCCEEEEEECCC
T ss_conf 42008999999358679999984545766512888768877552566420001117899960466798783369872146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~p~~~g~~~~~~~~~~~~~~~e~~a~~~~~~~~~r~~~v~n~~k~n~~G~pvgYkl~p~~~~~~~~~~~~~~~~~ra 320 (460)
T d1w7ca1 241 DVEYPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQ 320 (460)
T ss_dssp EEECTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEEEEEEEEECTTSCEEEEEEEECTTCCCCSCSSCTTCSSSC
T ss_pred CCCCCCCCCCEEEEEEEEEEEECCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 76788888854444888776513301220025766831899838988787888214686368776533587664303333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~fa~~~lwVT~y~d~E~~asg~~~~q~~~~~~~~~~~~~~de~I~n~DiV~W~t~G~~HvPr~ED~P~tVMP~e~~gf~L 400 (460)
T d1w7ca1 321 NWARSNLFLTKHKDTELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFML 400 (460)
T ss_dssp GGGGSSEEEEECCTTCCCSCCTTCTTCSSSCSCCGGGGCSCCBCTTEEEEEEEEEEEEECCCGGGSSCBCSSSSEEEEEE
T ss_pred HHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCEEEEEE
T ss_conf 36244375755777641777666546778886675311389963288279999158757998556788765666577999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------9
Q 000235 1717 -----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~P~nFF~~nPald~p~~~~~~~~~~~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~g~~~~ 460 (460)
T d1w7ca1 401 TPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGVEVAEPNFEDYTYGRGTR 460 (460)
T ss_dssp EEESSSSSCTTTTCSSEEEEEECTTTCCEEEECTTCCCSCCBCCCCCCCGGGCCCSSCEE
T ss_pred ECCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 888888889553577325871377887111011278777644301378888865667679
|
| >d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34702.58 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~klW~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~I~~al~~i~~~~~~~~~~~~~~~ 80 (459)
T d1k62b_ 1 GKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSND 80 (459)
T ss_dssp CCSSCSCCCCSSCHHHHHTTCCHHHHGGGHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99987567855109999974777789999999999999999999987998999999999999999988861985568766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ed~~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~Ta~~L~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~ 160 (459)
T d1k62b_ 81 EDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQ 160 (459)
T ss_dssp CSHHHHHHHHHHHTTSSGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEECCCCC
T ss_conf 62389999999974241005137888720089999999999989999999999999997621133131212011112578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lGg~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~sRd~~~e~~~~ 240 (459)
T d1k62b_ 161 PIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFW 240 (459)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHSCBCTTCTTTTCCTTCCCHHHHHHHTTCSCBCSCHHHHHHCCHHHHHHHHH
T ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHH
T ss_conf 70079999999999999999999999876665125656778875430356666775034564401001012499999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 l~~l~~~l~ria~Dl~l~~~~e~~~~~~~~~~~~GSSiMPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~ 320 (459)
T d1k62b_ 241 RSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDL 320 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTCSEECCGGGCEECSSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
T ss_conf 74999999999999998533553202423543554301100144078888888862224630137899845745540552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~l~~~~~~~~~~l~~~~~vi~~l~vn~erm~~~l~~~~~At~la~~Lv~~Gi~fr~AH~~V~~lv~~a~~~g~~l 400 (459)
T d1k62b_ 321 QEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVAL 400 (459)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCCGGGTHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTSCG
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 10011223356788764222221046247545459998730014999999999869988999999999999999829997
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~l~~~e~~~~~~~~~~dl~~~ldp~~~v~~r~~~GG~ap~~V~~~i~~~r~~L~~~~a 459 (459)
T d1k62b_ 401 NQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQVRALLQAQQA 459 (459)
T ss_dssp GGSCHHHHHTTCTTCCGGGGGTTCHHHHHTTCCSTTSSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 77289999875511679999968999999756689999799999999999999875619
|
| >d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: L-aspartate ammonia lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34701.23 Aligned_cols=1 Identities=0% Similarity=-0.794 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 m~~~~r~e~d~~g~~~vp~~~~~g~~t~ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~i~~~~a~aI~~a~ 80 (459)
T d1jswa_ 1 MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAAC 80 (459)
T ss_dssp CCCSEEEEECSSCEEEEESSCCCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99887300357757227754631587999997679878888877999999999999999999993899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~evi~~g~~~~~f~~d~~q~g~gt~~nmn~nevia~~a~~~~g~~~g~~~~v~p~~~Vh~G~SsnDi~~Ta~~L~~~~~l 160 (459)
T d1jswa_ 81 DEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL 160 (459)
T ss_dssp HHHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99996787412202204652011432012116788898885177567766642332332157624568899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~L~~~L~~L~~~L~~~A~~~~~tvm~GRTHlQ~A~PiTfG~~~~~~~~~l~r~~~rl~~~~~~l~~~~lGg~A~gt~~~ 240 (459)
T d1jswa_ 161 IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN 240 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999999999886158055017640637674169999997899987899999887888862320233223311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~e~~~l~E~~lp~~q~G 320 (459)
T d1jswa_ 241 TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAG 320 (459)
T ss_dssp CTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCCCSCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEECCCHHHCCC
T ss_conf 23331488899988741255444330110000309999999999999999999999999981788301000232021132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 SSiMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~er 400 (459)
T d1jswa_ 321 SSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEV 400 (459)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHH
T ss_conf 17899887025676677764013311110066653267531005777899999999999999999999888319888999
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 m~~~l~~s~~LataL~p~iG~~~a~~iak~A~~~g~~l~e~~le~~~ls~~eld~ildv 459 (459)
T d1jswa_ 401 CEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSV 459 (459)
T ss_dssp HHHHHTTCTTCGGGTHHHHCHHHHHHHHHHHHTTCCCHHHHHHHHTSSCSHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 99998750889998012332579999999999959969999977389999999876287
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=34701.14 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~v~pG~~Deyy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~ 80 (459)
T d1fwxa2 1 ADGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIH 80 (459)
T ss_dssp CCCCCCTTCCCSEEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------C
T ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCC
T ss_conf 98646998765579994078663389995488635877010357877455764467777633567223223320586023
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pn 160 (459)
T d1fwxa2 81 DNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN 160 (459)
T ss_dssp CCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCC
T ss_conf 57876887514448855512899975898638999885405667996678877750120257974799736765444599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie 240 (459)
T d1fwxa2 161 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 240 (459)
T ss_dssp SSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred CCCCCCCHHHCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEECHHHHH
T ss_conf 98513240112268999966776698996408972015318999989997135568853222252454189996348868
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp HHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred HHHHCCCCEEECCCEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCC
T ss_conf 76405993796994661542367852038986589877338899997899938858957999822535665046884521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l 400 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 400 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 79611357676620338984299986123169997344055664466677311354334578877457678678888789
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d~p~~~ePh~~~~~~~~~~~p~~ 459 (459)
T d1fwxa2 401 VCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIK 459 (459)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTTTTTTCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCEEEEEHHHCCCCC
T ss_conf 98034343446678889876553797479815998516788998527998788766789
|
| >d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=34699.92 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~r~e~d~~g~~~vp~~~~~G~~T~ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~lG~l~~~~a~aI~~a~~ei 80 (459)
T d1yfma_ 1 SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEV 80 (459)
T ss_dssp CEEEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99876068877217765630498899997769999865589999999999999999999985999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~~~~~~~~~~vhp~d~v~~gqSsnD~~~Ta~~l~~~~~~~~~L~ 160 (459)
T d1yfma_ 81 ASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELI 160 (459)
T ss_dssp HHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 81875334640188621321233322246677788875024666424834214203542765306999999999999889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~L~~L~~~L~~kA~e~~~~im~GRTHlQ~A~PiT~G~~~~~~~~~l~r~~~RL~~~~~~l~~~~lGgta~gtg~~a~~~ 240 (459)
T d1yfma_ 161 PELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG 240 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf 88988999999999865682301186277278764799999999999999999999987666651556022134468974
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~~~~g~~El~~~~~~~GSSiM 320 (459)
T d1yfma_ 241 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIM 320 (459)
T ss_dssp HHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTS
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 10999999999719998656863999747746899999999999999999999998606602257763010024657324
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 P~K~NPv~~E~v~~~~~~v~G~~~~i~~~~~~~~~e~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 400 (459)
T d1yfma_ 321 PGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHEL 400 (459)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHH
T ss_conf 54568066788989999851076689998713835556311588887889999999999999999866289989999999
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 l~~s~~l~taL~~~iGy~~A~~ia~~a~~~g~~lre~~~~~~~Ls~~eld~lldP~~~l 459 (459)
T d1yfma_ 401 LTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459 (459)
T ss_dssp HHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHCCGGGCC
T ss_pred HHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCHHHHC
T ss_conf 87273099873400439999999999998299899999981899999999872998729
|
| >d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34699.25 Aligned_cols=1 Identities=100% Similarity=0.271 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~klW~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~I~~al~~i~~~~~~~~~~~~~~~ 80 (459)
T d1k62b_ 1 GKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSND 80 (459)
T ss_dssp CCSSCSCCCCSSCHHHHHTTCCHHHHGGGHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99987567855109999974777789999999999999999999987998999999999999999988861985568766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ed~~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~Ta~~L~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~ 160 (459)
T d1k62b_ 81 EDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQ 160 (459)
T ss_dssp CSHHHHHHHHHHHTTSSGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEECCCCC
T ss_conf 62389999999974241005137888720089999999999989999999999999997621133131212011112578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lGg~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~sRd~~~e~~~~ 240 (459)
T d1k62b_ 161 PIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFW 240 (459)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHSCBCTTCTTTTCCTTCCCHHHHHHHTTCSCBCSCHHHHHHCCHHHHHHHHH
T ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHH
T ss_conf 70079999999999999999999999876665125656778875430356666775034564401001012499999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 l~~l~~~l~ria~Dl~l~~~~e~~~~~~~~~~~~GSSiMPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~ 320 (459)
T d1k62b_ 241 RSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDL 320 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTTCSEECCGGGCEECSSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC
T ss_conf 74999999999999998533553202423543554301100144078888888862224630137899845745540552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~l~~~~~~~~~~l~~~~~vi~~l~vn~erm~~~l~~~~~At~la~~Lv~~Gi~fr~AH~~V~~lv~~a~~~g~~l 400 (459)
T d1k62b_ 321 QEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVAL 400 (459)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHTCCGGGTHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTSCG
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 10011223356788764222221046247545459998730014999999999869988999999999999999829997
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~l~~~e~~~~~~~~~~dl~~~ldp~~~v~~r~~~GG~ap~~V~~~i~~~r~~L~~~~a 459 (459)
T d1k62b_ 401 NQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQVRALLQAQQA 459 (459)
T ss_dssp GGSCHHHHHTTCTTCCGGGGGTTCHHHHHTTCCSTTSSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 77289999875511679999968999999756689999799999999999999875619
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=34698.73 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~v~pG~~Deyy~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~ 80 (459)
T d1fwxa2 1 ADGSVAPGQLDDYYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIH 80 (459)
T ss_dssp CCCCCCTTCCCSEEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------C
T ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCC
T ss_conf 98646998765579994078663389995488635877010357877455764467777633567223223320586023
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pn 160 (459)
T d1fwxa2 81 DNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN 160 (459)
T ss_dssp CCCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCC
T ss_conf 57876887514448855512899975898638999885405667996678877750120257974799736765444599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie 240 (459)
T d1fwxa2 161 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 240 (459)
T ss_dssp SSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred CCCCCCCHHHCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEECHHHHH
T ss_conf 98513240112268999966776698996408972015318999989997135568853222252454189996348868
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp HHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred HHHHCCCCEEECCCEEECCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCC
T ss_conf 76405993796994661542367852038986589877338899997899938858957999822535665046884521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l 400 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 400 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 79611357676620338984299986123169997344055664466677311354334578877457678678888789
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d~p~~~ePh~~~~~~~~~~~p~~ 459 (459)
T d1fwxa2 401 VCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHPSILSDIK 459 (459)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECTTTTTTCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCEEEEEHHHCCCCC
T ss_conf 98034343446678889876553797479815998516788998527998788766789
|
| >d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: L-aspartate ammonia lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34697.79 Aligned_cols=1 Identities=0% Similarity=-0.760 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 m~~~~r~e~d~~g~~~vp~~~~~g~~t~ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~~G~i~~~~a~aI~~a~ 80 (459)
T d1jswa_ 1 MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAAC 80 (459)
T ss_dssp CCCSEEEEECSSCEEEEESSCCCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99887300357757227754631587999997679878888877999999999999999999993899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~evi~~g~~~~~f~~d~~q~g~gt~~nmn~nevia~~a~~~~g~~~g~~~~v~p~~~Vh~G~SsnDi~~Ta~~L~~~~~l 160 (459)
T d1jswa_ 81 DEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL 160 (459)
T ss_dssp HHHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99996787412202204652011432012116788898885177567766642332332157624568899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~L~~~L~~L~~~L~~~A~~~~~tvm~GRTHlQ~A~PiTfG~~~~~~~~~l~r~~~rl~~~~~~l~~~~lGg~A~gt~~~ 240 (459)
T d1jswa_ 161 IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLN 240 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSCCSSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999999999886158055017640637674169999997899987899999887888862320233223311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~e~~~l~E~~lp~~q~G 320 (459)
T d1jswa_ 241 TPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAG 320 (459)
T ss_dssp CTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEECCCCSCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEECCCHHHCCC
T ss_conf 23331488899988741255444330110000309999999999999999999999999981788301000232021132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 SSiMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~er 400 (459)
T d1jswa_ 321 SSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEV 400 (459)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHH
T ss_conf 17899887025676677764013311110066653267531005777899999999999999999999888319888999
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 m~~~l~~s~~LataL~p~iG~~~a~~iak~A~~~g~~l~e~~le~~~ls~~eld~ildv 459 (459)
T d1jswa_ 401 CEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEAELDDIFSV 459 (459)
T ss_dssp HHHHHTTCTTCGGGTHHHHCHHHHHHHHHHHHTTCCCHHHHHHHHTSSCSHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 99998750889998012332579999999999959969999977389999999876287
|
| >d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=34696.65 Aligned_cols=1 Identities=0% Similarity=-0.260 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 ~~r~e~d~~g~~~vp~~~~~G~~T~ra~~nf~i~~~~~~~~~~~i~a~~~vk~A~A~an~~lG~l~~~~a~aI~~a~~ei 80 (459)
T d1yfma_ 1 SFRTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEV 80 (459)
T ss_dssp CEEEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99876068877217765630498899997769999865589999999999999999999985999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~~~~~~~~~~vhp~d~v~~gqSsnD~~~Ta~~l~~~~~~~~~L~ 160 (459)
T d1yfma_ 81 ASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELI 160 (459)
T ss_dssp HHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 81875334640188621321233322246677788875024666424834214203542765306999999999999889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~L~~L~~~L~~kA~e~~~~im~GRTHlQ~A~PiT~G~~~~~~~~~l~r~~~RL~~~~~~l~~~~lGgta~gtg~~a~~~ 240 (459)
T d1yfma_ 161 PELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPG 240 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf 88988999999999865682301186277278764799999999999999999999987666651556022134468974
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~~~~g~~El~~~~~~~GSSiM 320 (459)
T d1yfma_ 241 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIM 320 (459)
T ss_dssp HHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTS
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 10999999999719998656863999747746899999999999999999999998606602257763010024657324
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 P~K~NPv~~E~v~~~~~~v~G~~~~i~~~~~~~~~e~n~~~~~~~~~~l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~ 400 (459)
T d1yfma_ 321 PGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHEL 400 (459)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHH
T ss_conf 54568066788989999851076689998713835556311588887889999999999999999866289989999999
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 l~~s~~l~taL~~~iGy~~A~~ia~~a~~~g~~lre~~~~~~~Ls~~eld~lldP~~~l 459 (459)
T d1yfma_ 401 LTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459 (459)
T ss_dssp HHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHCCGGGCC
T ss_pred HHHCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCHHHHC
T ss_conf 87273099873400439999999999998299899999981899999999872998729
|
| >d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025 {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: SusD-like domain: Uncharacterized protein BF3025 species: Bacteroides fragilis [TaxId: 817]
Probab=100.00 E-value=0 Score=34695.37 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~p~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~y~~l~~~~~~i~~~~~~~~~~y~geA~flR 80 (459)
T d3ejna1 1 QTHPKLLLTQICMNAFKRGTDGMYATKKVIQADGESADQYYKWTRGSFGYYDNLRNVQKMGEEAERVNAPVYTALTKFFR 80 (459)
T ss_dssp CCCTHHHHHHHHHHHHCCCSGGGTTTTSEEESSSCCTTTTTCCCBCCCTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98788999999861662476065776751036787740001114788999999999999998643245799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 A~~yf~Lv~~fGdVPy~~~~~~~~~~~~~p~~ds~~eVY~~I~~DL~~Ai~~L~~~~~~~~~~~~~~g~~~k~~~~a~~L 160 (459)
T d3ejna1 81 AYYFYELTLRFGDIPYSQALKGEKEEIYTPEYDAQEDVFAGILQELREADEILANDASVIDGDIIYNGNSTQWRKLINSF 160 (459)
T ss_dssp HHHHHHHHHHHSSBCCTTTTC------CCCCCBCHHHHHHHHHHHHHHHHHHHHTCCCCCTTCTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHH
T ss_conf 99999999985894313135677654346677879999999999999999853224445330100045089999988789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~r~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 240 (459)
T d3ejna1 161 RLKVLMTLSNHTTVGNINIASEFKNIATNSPLMNSLADNGQLVYLDQQGNRYPQFNAQWSGYYMDDTFIQRMRERRDPRL 240 (459)
T ss_dssp HHHHHHHTTTCSEETTEEHHHHHHHHHHHSCCCCSGGGCEEECCCSSTTCSCTTTTCCCTTEEEBHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCH
T ss_conf 99999997530004689999999999872786665012034401467777665214555676554067776326789741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ryAEv~Li~AEA~~~~g 320 (459)
T d3ejna1 241 FIFSAQTNKGKTEGKPIDDFSSYEGGDPAAPYSDAIIKVSEGTISPINDRFRTDPIVEPTMLMGYAELQQILAEAVVRGW 320 (459)
T ss_dssp HHHBCCCHHHHHTTCCTTCGGGCCCBCTTSCSCCHHHHHC---CCCBCGGGTSCSSCCCEEEECHHHHHHHHHHHHHTTS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCC
T ss_conf 00345566544457756653310068767655665423566411576655566778787687539998887899999569
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~A~~~~~~gi~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~qk~i~~~~~g~~e~w~d~ 400 (459)
T d3ejna1 321 ISGNAQTYYEKGIRASFSFYETHAKDYAGYLNENAVAQYLKEPLVDFTQASGTEEQIERIIMQKYLVTFYQGNWDSFYEQ 400 (459)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHSGGGGGGSSHHHHHHHTTSTTTCGGGCCSHHHHHHHHHHHHHTTCSSSSTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 94109999999999999874545432111112220244430554432546686999999999999997579854189999
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1683 ----------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------------~ 1683 (1815)
+
T Consensus 401 RRtg~P~~~~~~~~~~p~R~~yp~~E~~~N~~n~~~a~~~~~~~g~d~~~~~~wWdk~~ 459 (459)
T d3ejna1 401 LRTGYPDFRRPAGTEIPKRWMYPQGEYDNNGTNVETAITRQFGAGNDKINQATWWQKKS 459 (459)
T ss_dssp HHHCCSCCCCCTTCCCCCCCBCCHHHHHHSHHHHHHHHHHHHSTTCCCTTCCCGGGSCC
T ss_pred HHCCCCCCCCCCCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEECCC
T ss_conf 86199877488888773453258206644999999999986458986457826444789
|
| >d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025 {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: SusD-like domain: Uncharacterized protein BF3025 species: Bacteroides fragilis [TaxId: 817]
Probab=100.00 E-value=0 Score=34692.09 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~p~~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~y~~l~~~~~~i~~~~~~~~~~y~geA~flR 80 (459)
T d3ejna1 1 QTHPKLLLTQICMNAFKRGTDGMYATKKVIQADGESADQYYKWTRGSFGYYDNLRNVQKMGEEAERVNAPVYTALTKFFR 80 (459)
T ss_dssp CCCTHHHHHHHHHHHHCCCSGGGTTTTSEEESSSCCTTTTTCCCBCCCTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98788999999861662476065776751036787740001114788999999999999998643245799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 A~~yf~Lv~~fGdVPy~~~~~~~~~~~~~p~~ds~~eVY~~I~~DL~~Ai~~L~~~~~~~~~~~~~~g~~~k~~~~a~~L 160 (459)
T d3ejna1 81 AYYFYELTLRFGDIPYSQALKGEKEEIYTPEYDAQEDVFAGILQELREADEILANDASVIDGDIIYNGNSTQWRKLINSF 160 (459)
T ss_dssp HHHHHHHHHHHSSBCCTTTTC------CCCCCBCHHHHHHHHHHHHHHHHHHHHTCCCCCTTCTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHH
T ss_conf 99999999985894313135677654346677879999999999999999853224445330100045089999988789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~r~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 240 (459)
T d3ejna1 161 RLKVLMTLSNHTTVGNINIASEFKNIATNSPLMNSLADNGQLVYLDQQGNRYPQFNAQWSGYYMDDTFIQRMRERRDPRL 240 (459)
T ss_dssp HHHHHHHTTTCSEETTEEHHHHHHHHHHHSCCCCSGGGCEEECCCSSTTCSCTTTTCCCTTEEEBHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCH
T ss_conf 99999997530004689999999999872786665012034401467777665214555676554067776326789741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ryAEv~Li~AEA~~~~g 320 (459)
T d3ejna1 241 FIFSAQTNKGKTEGKPIDDFSSYEGGDPAAPYSDAIIKVSEGTISPINDRFRTDPIVEPTMLMGYAELQQILAEAVVRGW 320 (459)
T ss_dssp HHHBCCCHHHHHTTCCTTCGGGCCCBCTTSCSCCHHHHHC---CCCBCGGGTSCSSCCCEEEECHHHHHHHHHHHHHTTS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCC
T ss_conf 00345566544457756653310068767655665423566411576655566778787687539998887899999569
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~A~~~~~~gi~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~qk~i~~~~~g~~e~w~d~ 400 (459)
T d3ejna1 321 ISGNAQTYYEKGIRASFSFYETHAKDYAGYLNENAVAQYLKEPLVDFTQASGTEEQIERIIMQKYLVTFYQGNWDSFYEQ 400 (459)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHSGGGGGGSSHHHHHHHTTSTTTCGGGCCSHHHHHHHHHHHHHTTCSSSSTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 94109999999999999874545432111112220244430554432546686999999999999997579854189999
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------9
Q 000235 1717 ----------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 RRtg~P~~~~~~~~~~p~R~~yp~~E~~~N~~n~~~a~~~~~~~g~d~~~~~~wWdk~~ 459 (459)
T d3ejna1 401 LRTGYPDFRRPAGTEIPKRWMYPQGEYDNNGTNVETAITRQFGAGNDKINQATWWQKKS 459 (459)
T ss_dssp HHHCCSCCCCCTTCCCCCCCBCCHHHHHHSHHHHHHHHHHHHSTTCCCTTCCCGGGSCC
T ss_pred HHCCCCCCCCCCCCCCEEEEECCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCEECCC
T ss_conf 86199877488888773453258206644999999999986458986457826444789
|
| >d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: 5' nucleotidase-like domain: Cytosolic IMP-GMP specific 5'-nucleotidase species: Legionella pneumophila [TaxId: 446]
Probab=100.00 E-value=0 Score=34623.09 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 d~~~vF~Nr~l~L~~i~~~GFDmDyTLa~Yk~~~~e~L~y~~~~~~LV~~~gYP~~ll~~~ydp~F~iRGL~~D~~~Gnl 80 (458)
T d2bdea1 1 DTHKVFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFNFDDAIRGLVIDSKNGNI 80 (458)
T ss_dssp CCCSCEESSCEETTTCCEEEECTBTTTBEECHHHHHHHHHHHHHHHHHHHTCCCGGGGGCCCCGGGCCTTCEEETTTTEE
T ss_pred CCCEEEECCEECCCCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHCCEEEECCCCEE
T ss_conf 99558870631305598898788754111681789999999999999873199989956989975001435788456849
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 lKld~~g~I~~a~hG~~~l~~eei~~~Y~~~~~~~~~~~~~~l~t~F~lpe~~L~a~lVd~~d~~~~~~~~y~~i~~dv~ 160 (458)
T d2bdea1 81 LKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYVDLGDPNYMAIDTSFSIAFCILYGQLVDLKDTNPDKMPSYQAIAQDVQ 160 (458)
T ss_dssp EEEBTTSBEEEEEETTEECCHHHHHHHHTSSBCCTTSTTEECCCCTTHHHHHHHHHHHHHHHHHSTTTSCCHHHHHHHHH
T ss_pred EEECCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99868994898714882898899998669854567888526614444448999999999999718864432999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~av~~~h~~G~l~~~v~~np~kYv~k~~~l~~~L~~lr~~GKklFLiTNS~~~y~~~~m~y~~~~~~~~g~dWr~lFDvV 240 (458)
T d2bdea1 161 YCVDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEFV 240 (458)
T ss_dssp HHHHHHHHHSHHHHHHHTCTTTSEECCHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHGGGSCTTCCGGGTEEEE
T ss_pred HHHHHHCCCCCCHHHHHHCHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHCEEE
T ss_conf 99875437773117776397976017864799999999729769997268577899976653256777898867744089
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 Iv~A~KP~FF~~~~~~~~v~~~~g~l~~~~~~~~~~vY~gGn~~~l~~llg~~g~~VLY~GDhi~~Di~~~kk~~gWrT~ 320 (458)
T d2bdea1 241 ITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTA 320 (458)
T ss_dssp EESCCHHHHHHSCCCEEEECTTTCCEEECCSCCCSEEEEECCHHHHHHHTTCCGGGEEEEESSCCSCHHHHHHHHCSEEE
T ss_pred EECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 96899987637897645776798850467765668732467999999996788980799778620655424440698458
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~Ii~ELe~Ei~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 400 (458)
T d2bdea1 321 LVVEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSF 400 (458)
T ss_dssp EECTTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75598998887664002068999888878999999999875401026554204899999999999999999999999877
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 fn~~~GslfRtg~~~S~Fa~qv~RyAdlYtS~v~Nll~Y~~~~~Fr~~~~~mPHE~~v 458 (458)
T d2bdea1 401 YNPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRANRRLLAHDIDI 458 (458)
T ss_dssp SCTTTCCSSEETTEEBHHHHHHHHHCSEEESSHHHHHHSCTTCEECCCCCCCTTCCCC
T ss_pred HCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
T ss_conf 1613455526899976779999998798871376885699331757999878998889
|
| >d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Bleomycin hydrolase species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
Probab=100.00 E-value=0 Score=34620.35 Aligned_cols=1 Identities=0% Similarity=0.304 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~~~~i~~~~l~~~~~~f~~~~~~~~a~na~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~vtnQ~~SGrCW~ 80 (458)
T d3gcba_ 1 AFQGAMASSIDISKINSWNKEFQSDLTHQLATTVLKNYNADDALLNKTRLQKQDNRVFNTVVSTDSTPVTNQKSSGRAWL 80 (458)
T ss_dssp CHHHHHHTSCCHHHHHHHHHHHHTSHHHHHHHHHHTTSCHHHHHBCHHHHHHHCCCCCSEECSSCCCSCCBCCBSSCHHH
T ss_pred CCCCHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHH
T ss_conf 98750113489999999999987097889999999855989988576867414686102576569887565898854297
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 FA~ln~lr~~~~~~~~~~~felSq~Yl~f~dklEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~~DGG~w~m~~nli~KY 160 (458)
T d3gcba_ 81 FAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKY 160 (458)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf 76759999999997499984513788988649999999999999744899621899997631567774189999999982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 G~VPk~~ypet~~~s~~s~~mN~~L~~kLre~a~~Lr~~~~~~~~~~~~~~~~~~~~~~~vy~il~~~LG~PP~~~~e~F 240 (458)
T d3gcba_ 161 GLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQREIFRLMSLFMDIPPVQPNEQF 240 (458)
T ss_dssp CCCBGGGSCSCSHHHHBCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHSCCCSSCTTSCE
T ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 98727544876667634388899999999999999999997026877789998998999999999997498999887421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~y~dkd~k~~~~~~TP~~F~~~~v~~~~~dyV~L~n~P~~py~k~y~v~~~~Nv~~G~~~~y~Nvp~d~lk~~~~~sL 320 (458)
T d3gcba_ 241 TWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKIDRLGNVLGGDAVIYLNVDNETLSKLVVKRL 320 (458)
T ss_dssp EEEEECTTSCEEEEEECHHHHHHHTSCCCTTSEEEEECCTTSCTTCEEEESSCCSSTTCCCEEEEECCHHHHHHHHHHHH
T ss_pred EEEECCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 47762566633661799989999981866330455125445753237874453434588242786068999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~g~pVwfgcDV~k~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~D~~g~~~~~w~VeNSWG 400 (458)
T d3gcba_ 321 QNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVENSWG 400 (458)
T ss_dssp HTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECTTTCSEEEEEEECSBC
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCC
T ss_conf 54995899925441034104623354444333587755699999872898787459999998737899511699980667
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~g~~Gy~~msd~WF~eyv~eivV~K~~l~~~i~~~l~~~~~~pi~Lp~WDpmGaLA 458 (458)
T d3gcba_ 401 KDSGKDGLYVMTQKYFEEYCFQIVVDINELPKELASKFTSGKEEPIVLPIWDPMGALA 458 (458)
T ss_dssp TTSTBTTEEEEEHHHHHHHEEEEEEEGGGSCHHHHHHHHSSCCCCEEECTTCSSCCBC
T ss_pred CCCCCCCEEEECHHHHHHCCEEEEEEHHHCCHHHHHHHHHCCCCCEECCCCCCCCCCC
T ss_conf 8889983699648999751589998746499999998753768872688989644569
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34620.21 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 el~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~ 80 (458)
T d1ibrb_ 1 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 80 (458)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 98989998859499999999999999875283589999999984489998999999999998863267111167764111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 160 (458)
T d1ibrb_ 81 AIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 160 (458)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 49999999999999861479828999999999999998678012751057899998820321778888998888987631
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 240 (458)
T d1ibrb_ 161 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 240 (458)
T ss_dssp CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 41000233889999999986154567999999999999998861324566777777676688772599899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
T d1ibrb_ 241 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 320 (458)
T ss_dssp HHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998719999988877899999998435459999999999999899889999850367876418999999999988998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~ 400 (458)
T d1ibrb_ 321 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 400 (458)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred HHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 72667764000102101122339999999999998755175566789999998569998999999999999997547767
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll~g 458 (458)
T d1ibrb_ 401 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 458 (458)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 8988999999999884899899999999999999997201001356899999998285
|
| >d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: Dac-like domain: Penicillin-binding protein DacC species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=34619.99 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~L~~~i~~~l~~~~~l~~~~~gi~V~d~~tg~~l~~~n~~~~~~PAS~~Kl~TtaaAL~~LGpd~rf~T~v~~~g~~~~ 80 (458)
T d1w5da1 1 DALSGQIDKILADHPALEGAMAGITVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENYSFTTEVRTDGTLKG 80 (458)
T ss_dssp CHHHHHHHHHHHHCGGGTTCEEEEEEEETTTCCEEEEESTTSCBCCGGGGHHHHHHHHHHHHCTTCCCEEEEEESSCCSS
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 92689999999738344587599999989999894232899875856999999999999961998737889996164348
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 g~l~G~L~i~G~GDP~L~~~~l~~l~~~l~~~Gi~~I~G~ii~D~s~f~~~~~~~~w~~~d~~~~y~a~~s~l~~n~N~~ 160 (458)
T d1w5da1 81 KKLNGNLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYTYYGAPISALTASPNED 160 (458)
T ss_dssp SEECSCEEEEECSCTTCCHHHHHHHHHHHHHTTCCEESSCEEEECTTSCSCCSCTTCCGGGTTBGGGCCCCSSCCCSSTT
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 83176399993569987654699999999972884311644650422233345778875542112468752001564300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~v~n~~~t~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~v~d 240 (458)
T d1w5da1 161 YDAGTVIVEVTPNQKEGEEPAVSVSPKTDYITIKNDAKTTAAGSEKDLTIEREHGTNTITIEGSVPVDANKTKEWISVWE 240 (458)
T ss_dssp CCTTEEEEEEECCSSSSSCCEEEEESCCSSSEEEEEEEEECTTSCCCCEEEECTTSSEEEEEEEEESSCCCEEEEEECSS
T ss_pred CCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEECCCC
T ss_conf 14651489962332468873388446766158873025404666566335514788449984124667776520001220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 P~~~a~~~f~~~L~~~Gi~v~~~~~~~~~p~~~~~l~~~~S~pL~~iv~~m~k~SdN~~AE~L~~~~g~~~~~~~s~~~g 320 (458)
T d1w5da1 241 PAGYALDLFKQSLKKQGITVKGDIKTGEAPSSSDVLLSHRSMPLSKLFVPFMKLSNNGHAEVLVKEMGKVKKGEGSWEKG 320 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCEESSCEEECCCCTTSEEEEEEECCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSCCSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 45799999999999739143134332344676600025435109999999985286899999999999873699875778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~l~~~gi~~~~~~l~DGSGLSr~n~it~~~l~~lL~~~~~~~~~~~~~~sLPiaG~~~~~vdGTL~~R~~~~~~ 400 (458)
T d1w5da1 321 LEVLNSTLPEFGVDSKSLVLRDGSGISHIDAVSSDQLSQLLYDIQDQSWFSAYLNSLPVAGNPDRMVGGTLRNRMKGTPA 400 (458)
T ss_dssp HHHHHHHGGGGTCCGGGCBCSCSSSCCTTCBBCHHHHHHHHHHHTTSTTHHHHHHHSCBTTCSSHHHHGGGTTSSTTSTT
T ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 89877788870788777365168755545630899999999998849017899972983788777768726664237876
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1683 ---------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~g~v~aKTGtL~~v~~LaGyv~~~~G~~~~Fsi~~N~~~~~~~~r~~~d~i~~~la~~ 458 (458)
T d1w5da1 401 QGKVRAKTGSLSTVSSLSGYAETKSGKKLVFSILLNGLIDEEDGKDIEDQIAVILANQ 458 (458)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEESCSSGGGHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 7859999876579668589999799999999999479998688899999999999619
|
| >d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: 5' nucleotidase-like domain: Cytosolic IMP-GMP specific 5'-nucleotidase species: Legionella pneumophila [TaxId: 446]
Probab=100.00 E-value=0 Score=34619.58 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 d~~~vF~Nr~l~L~~i~~~GFDmDyTLa~Yk~~~~e~L~y~~~~~~LV~~~gYP~~ll~~~ydp~F~iRGL~~D~~~Gnl 80 (458)
T d2bdea1 1 DTHKVFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFNFDDAIRGLVIDSKNGNI 80 (458)
T ss_dssp CCCSCEESSCEETTTCCEEEECTBTTTBEECHHHHHHHHHHHHHHHHHHHTCCCGGGGGCCCCGGGCCTTCEEETTTTEE
T ss_pred CCCEEEECCEECCCCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHCCEEEECCCCEE
T ss_conf 99558870631305598898788754111681789999999999999873199989956989975001435788456849
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 lKld~~g~I~~a~hG~~~l~~eei~~~Y~~~~~~~~~~~~~~l~t~F~lpe~~L~a~lVd~~d~~~~~~~~y~~i~~dv~ 160 (458)
T d2bdea1 81 LKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYVDLGDPNYMAIDTSFSIAFCILYGQLVDLKDTNPDKMPSYQAIAQDVQ 160 (458)
T ss_dssp EEEBTTSBEEEEEETTEECCHHHHHHHHTSSBCCTTSTTEECCCCTTHHHHHHHHHHHHHHHHHSTTTSCCHHHHHHHHH
T ss_pred EEECCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99868994898714882898899998669854567888526614444448999999999999718864432999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~av~~~h~~G~l~~~v~~np~kYv~k~~~l~~~L~~lr~~GKklFLiTNS~~~y~~~~m~y~~~~~~~~g~dWr~lFDvV 240 (458)
T d2bdea1 161 YCVDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEFV 240 (458)
T ss_dssp HHHHHHHHHSHHHHHHHTCTTTSEECCHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHGGGSCTTCCGGGTEEEE
T ss_pred HHHHHHCCCCCCHHHHHHCHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHCEEE
T ss_conf 99875437773117776397976017864799999999729769997268577899976653256777898867744089
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 Iv~A~KP~FF~~~~~~~~v~~~~g~l~~~~~~~~~~vY~gGn~~~l~~llg~~g~~VLY~GDhi~~Di~~~kk~~gWrT~ 320 (458)
T d2bdea1 241 ITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTA 320 (458)
T ss_dssp EESCCHHHHHHSCCCEEEECTTTCCEEECCSCCCSEEEEECCHHHHHHHTTCCGGGEEEEESSCCSCHHHHHHHHCSEEE
T ss_pred EECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 96899987637897645776798850467765668732467999999996788980799778620655424440698458
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~Ii~ELe~Ei~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 400 (458)
T d2bdea1 321 LVVEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSF 400 (458)
T ss_dssp EECTTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75598998887664002068999888878999999999875401026554204899999999999999999999999877
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 fn~~~GslfRtg~~~S~Fa~qv~RyAdlYtS~v~Nll~Y~~~~~Fr~~~~~mPHE~~v 458 (458)
T d2bdea1 401 YNPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRANRRLLAHDIDI 458 (458)
T ss_dssp SCTTTCCSSEETTEEBHHHHHHHHHCSEEESSHHHHHHSCTTCEECCCCCCCTTCCCC
T ss_pred HCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
T ss_conf 1613455526899976779999998798871376885699331757999878998889
|
| >d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: Dac-like domain: Penicillin-binding protein DacC species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=34618.56 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~L~~~i~~~l~~~~~l~~~~~gi~V~d~~tg~~l~~~n~~~~~~PAS~~Kl~TtaaAL~~LGpd~rf~T~v~~~g~~~~ 80 (458)
T d1w5da1 1 DALSGQIDKILADHPALEGAMAGITVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVLGENYSFTTEVRTDGTLKG 80 (458)
T ss_dssp CHHHHHHHHHHHHCGGGTTCEEEEEEEETTTCCEEEEESTTSCBCCGGGGHHHHHHHHHHHHCTTCCCEEEEEESSCCSS
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 92689999999738344587599999989999894232899875856999999999999961998737889996164348
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 g~l~G~L~i~G~GDP~L~~~~l~~l~~~l~~~Gi~~I~G~ii~D~s~f~~~~~~~~w~~~d~~~~y~a~~s~l~~n~N~~ 160 (458)
T d1w5da1 81 KKLNGNLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYTYYGAPISALTASPNED 160 (458)
T ss_dssp SEECSCEEEEECSCTTCCHHHHHHHHHHHHHTTCCEESSCEEEECTTSCSCCSCTTCCGGGTTBGGGCCCCSSCCCSSTT
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 83176399993569987654699999999972884311644650422233345778875542112468752001564300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~v~n~~~t~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~v~d 240 (458)
T d1w5da1 161 YDAGTVIVEVTPNQKEGEEPAVSVSPKTDYITIKNDAKTTAAGSEKDLTIEREHGTNTITIEGSVPVDANKTKEWISVWE 240 (458)
T ss_dssp CCTTEEEEEEECCSSSSSCCEEEEESCCSSSEEEEEEEEECTTSCCCCEEEECTTSSEEEEEEEEESSCCCEEEEEECSS
T ss_pred CCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEECCCC
T ss_conf 14651489962332468873388446766158873025404666566335514788449984124667776520001220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 P~~~a~~~f~~~L~~~Gi~v~~~~~~~~~p~~~~~l~~~~S~pL~~iv~~m~k~SdN~~AE~L~~~~g~~~~~~~s~~~g 320 (458)
T d1w5da1 241 PAGYALDLFKQSLKKQGITVKGDIKTGEAPSSSDVLLSHRSMPLSKLFVPFMKLSNNGHAEVLVKEMGKVKKGEGSWEKG 320 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCEESSCEEECCCCTTSEEEEEEECCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSCCSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 45799999999999739143134332344676600025435109999999985286899999999999873699875778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~l~~~gi~~~~~~l~DGSGLSr~n~it~~~l~~lL~~~~~~~~~~~~~~sLPiaG~~~~~vdGTL~~R~~~~~~ 400 (458)
T d1w5da1 321 LEVLNSTLPEFGVDSKSLVLRDGSGISHIDAVSSDQLSQLLYDIQDQSWFSAYLNSLPVAGNPDRMVGGTLRNRMKGTPA 400 (458)
T ss_dssp HHHHHHHGGGGTCCGGGCBCSCSSSCCTTCBBCHHHHHHHHHHHTTSTTHHHHHHHSCBTTCSSHHHHGGGTTSSTTSTT
T ss_pred HHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 89877788870788777365168755545630899999999998849017899972983788777768726664237876
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~g~v~aKTGtL~~v~~LaGyv~~~~G~~~~Fsi~~N~~~~~~~~r~~~d~i~~~la~~ 458 (458)
T d1w5da1 401 QGKVRAKTGSLSTVSSLSGYAETKSGKKLVFSILLNGLIDEEDGKDIEDQIAVILANQ 458 (458)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEESCSSGGGHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 7859999876579668589999799999999999479998688899999999999619
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34617.16 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 el~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~ 80 (458)
T d1ibrb_ 1 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 80 (458)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 98989998859499999999999999875283589999999984489998999999999998863267111167764111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 160 (458)
T d1ibrb_ 81 AIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 160 (458)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 49999999999999861479828999999999999998678012751057899998820321778888998888987631
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 240 (458)
T d1ibrb_ 161 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 240 (458)
T ss_dssp CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 41000233889999999986154567999999999999998861324566777777676688772599899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
T d1ibrb_ 241 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 320 (458)
T ss_dssp HHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998719999988877899999998435459999999999999899889999850367876418999999999988998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~ 400 (458)
T d1ibrb_ 321 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 400 (458)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred HHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 72667764000102101122339999999999998755175566789999998569998999999999999997547767
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll~g 458 (458)
T d1ibrb_ 401 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 458 (458)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 8988999999999884899899999999999999997201001356899999998285
|
| >d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Bleomycin hydrolase species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
Probab=100.00 E-value=0 Score=34617.02 Aligned_cols=1 Identities=100% Similarity=0.902 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~~i~~~~l~~~~~~f~~~~~~~~a~na~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~vtnQ~~SGrCW~ 80 (458)
T d3gcba_ 1 AFQGAMASSIDISKINSWNKEFQSDLTHQLATTVLKNYNADDALLNKTRLQKQDNRVFNTVVSTDSTPVTNQKSSGRAWL 80 (458)
T ss_dssp CHHHHHHTSCCHHHHHHHHHHHHTSHHHHHHHHHHTTSCHHHHHBCHHHHHHHCCCCCSEECSSCCCSCCBCCBSSCHHH
T ss_pred CCCCHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHH
T ss_conf 98750113489999999999987097889999999855989988576867414686102576569887565898854297
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 FA~ln~lr~~~~~~~~~~~felSq~Yl~f~dklEKan~fL~~ii~~~~~~~~~R~v~~ll~~~~~DGG~w~m~~nli~KY 160 (458)
T d3gcba_ 81 FAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKY 160 (458)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHC
T ss_conf 76759999999997499984513788988649999999999999744899621899997631567774189999999982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 G~VPk~~ypet~~~s~~s~~mN~~L~~kLre~a~~Lr~~~~~~~~~~~~~~~~~~~~~~~vy~il~~~LG~PP~~~~e~F 240 (458)
T d3gcba_ 161 GLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIVTLREQMQREIFRLMSLFMDIPPVQPNEQF 240 (458)
T ss_dssp CCCBGGGSCSCSHHHHBCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHSCCCSSCTTSCE
T ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 98727544876667634388899999999999999999997026877789998998999999999997498999887421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~y~dkd~k~~~~~~TP~~F~~~~v~~~~~dyV~L~n~P~~py~k~y~v~~~~Nv~~G~~~~y~Nvp~d~lk~~~~~sL 320 (458)
T d3gcba_ 241 TWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKIDRLGNVLGGDAVIYLNVDNETLSKLVVKRL 320 (458)
T ss_dssp EEEEECTTSCEEEEEECHHHHHHHTSCCCTTSEEEEECCTTSCTTCEEEESSCCSSTTCCCEEEEECCHHHHHHHHHHHH
T ss_pred EEEECCCCCCEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 47762566633661799989999981866330455125445753237874453434588242786068999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~g~pVwfgcDV~k~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~D~~g~~~~~w~VeNSWG 400 (458)
T d3gcba_ 321 QNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHVDETSKLPLRYRVENSWG 400 (458)
T ss_dssp HTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECTTTCSEEEEEEECSBC
T ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCC
T ss_conf 54995899925441034104623354444333587755699999872898787459999998737899511699980667
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------9
Q 000235 1717 ---------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~g~~Gy~~msd~WF~eyv~eivV~K~~l~~~i~~~l~~~~~~pi~Lp~WDpmGaLA 458 (458)
T d3gcba_ 401 KDSGKDGLYVMTQKYFEEYCFQIVVDINELPKELASKFTSGKEEPIVLPIWDPMGALA 458 (458)
T ss_dssp TTSTBTTEEEEEHHHHHHHEEEEEEEGGGSCHHHHHHHHSSCCCCEEECTTCSSCCBC
T ss_pred CCCCCCCEEEECHHHHHHCCEEEEEEHHHCCHHHHHHHHHCCCCCEECCCCCCCCCCC
T ss_conf 8889983699648999751589998746499999998753768872688989644569
|
| >d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB {Archaeon Methanosarcina barkeri [TaxId: 2208]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Monomethylamine methyltransferase MtmB family: Monomethylamine methyltransferase MtmB domain: Monomethylamine methyltransferase MtmB species: Archaeon Methanosarcina barkeri [TaxId: 2208]
Probab=100.00 E-value=0 Score=34554.41 Aligned_cols=1 Identities=0% Similarity=-0.693 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 tf~ks~~~~d~ydRAk~Gek~eqkdwDl~~Ip~k~aeLkkkY~~~f~~~~iptdkdl~~~lFkAGfemlvecGiyc~Dt~ 80 (457)
T d1ntha_ 1 TFRKSFDCYDFYDRAKVGEKCTQDDWDLMKIPMKAMELKQKYGLDFKGEFIPTDKDMMEKLFKAGFEMLLECGIYCTDTH 80 (457)
T ss_dssp CCSSCCCHHHHHHHHHHSEECCHHHHHTTHHHHHHHHHHHHTTCCCTTCSSCCCHHHHHHHHHHHHHHHHHHCEEETTTT
T ss_pred CCCEEEEEEEHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCC
T ss_conf 94204788651334204764530143465444689998998497778878998489999999867788664363783031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 RvvkyTEeEv~~ai~napre~~~G~GkDav~lr~Rs~gD~~~pivqGGptG~P~sed~F~~~h~SYA~ep~VDtiv~Gv~ 160 (457)
T d1ntha_ 81 RIVKYTEDEIWDAINNVQKEFVLGTGRDAVNVRKRSVGDKAKPIVQGGPTGSPISEDVFMPVHMSYALEKEVDTIVNGVM 160 (457)
T ss_dssp EEECCCHHHHHHHHTTCCCEEEESCGGGCEEEECCCTTCSSCCEEEESCTTCEECGGGHHHHHHHHHTCTTCCEEECCEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCE
T ss_conf 66550499999998367713772367540256335788777850316889998758998888876521541225540301
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 q~v~G~~p~p~sP~E~lA~k~Ea~~vr~A~~~aGRPGMgv~g~ess~s~~g~~sa~~~g~~~~~Dsh~vsqLNELKiD~g 240 (457)
T d1ntha_ 161 TSVRGKSPIPKSPYEVLAAKTETRLIKNACAMAGRPGMGVKGPETSLSAQGNISADCTGGMTCTDSHEVSQLNELKIDLD 240 (457)
T ss_dssp SCBTTBCCCTTSHHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCSCCSHHHHHTTBCTTSBCTTSEEEEECBTTTEECHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 11137798999879987667789999999986389987654753330025650144227867662446667766520222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 al~~~a~Yvg~~~~im~eqmPi~GGYA~G~e~ttIVdVAtti~a~vm~~A~~~L~~PVHi~~~~T~t~E~l~iag~~~~~ 320 (457)
T d1ntha_ 241 AISVIAHYKGNSDIIMDEQMPIFGGYAGGIEETTIVDVATHINAVLMSSASWHLDGPVHIRWGSTNTRETLMIAGWACAT 320 (457)
T ss_dssp HHHHHHHHHHTTCEEEEECCCEETSSSCSHHHHHHHHHHHHHHHHHHSCCSEEEECCEETTTCCSCSHHHHHHHHHHHHH
T ss_pred HEEHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCEEECCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 30023344112543331445301443678665544439999999999732103336557873354078999999889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 i~~~t~l~~~nq~~p~aG~~T~~~L~EaaAq~itdtASG~evLsG~a~akGv~~n~~~G~Ea~mmae~A~a~A~~e~s~V 400 (457)
T d1ntha_ 321 ISEFTDILSGNQYYPCAGPCTEMCLLEASAQSITDTASGREILSGVASAKGVVTDKTTGMEARMMGEVARATAGVEISEV 400 (457)
T ss_dssp HHHHCCCCEEEECCCSSCSSSHHHHHHHHHHHHHHHHHTCSEEEECCCGGGCSTTCCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98753884224243158980024789877778887513324424745557723588865689999999988612217789
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~i~d~lv~lYEK~~~sa~~GKpF~E~YD~k~l~Pt~E~~~v~~ea~k~l~~Lgl~~ 457 (457)
T d1ntha_ 401 NVILDKLVSLYEKNYASAPAGKTFQECYDVKTVTPTEEYMQVYDGARKKLEDLGLVF 457 (457)
T ss_dssp HHHHHHHHHTTTTCSTTCCCCCCHHHHEETTTTEECHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 899999999988512679999977997501005765999999999999987532459
|
| >d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB {Archaeon Methanosarcina barkeri [TaxId: 2208]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Monomethylamine methyltransferase MtmB family: Monomethylamine methyltransferase MtmB domain: Monomethylamine methyltransferase MtmB species: Archaeon Methanosarcina barkeri [TaxId: 2208]
Probab=100.00 E-value=0 Score=34552.47 Aligned_cols=1 Identities=0% Similarity=-0.727 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 tf~ks~~~~d~ydRAk~Gek~eqkdwDl~~Ip~k~aeLkkkY~~~f~~~~iptdkdl~~~lFkAGfemlvecGiyc~Dt~ 80 (457)
T d1ntha_ 1 TFRKSFDCYDFYDRAKVGEKCTQDDWDLMKIPMKAMELKQKYGLDFKGEFIPTDKDMMEKLFKAGFEMLLECGIYCTDTH 80 (457)
T ss_dssp CCSSCCCHHHHHHHHHHSEECCHHHHHTTHHHHHHHHHHHHTTCCCTTCSSCCCHHHHHHHHHHHHHHHHHHCEEETTTT
T ss_pred CCCEEEEEEEHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCC
T ss_conf 94204788651334204764530143465444689998998497778878998489999999867788664363783031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 RvvkyTEeEv~~ai~napre~~~G~GkDav~lr~Rs~gD~~~pivqGGptG~P~sed~F~~~h~SYA~ep~VDtiv~Gv~ 160 (457)
T d1ntha_ 81 RIVKYTEDEIWDAINNVQKEFVLGTGRDAVNVRKRSVGDKAKPIVQGGPTGSPISEDVFMPVHMSYALEKEVDTIVNGVM 160 (457)
T ss_dssp EEECCCHHHHHHHHTTCCCEEEESCGGGCEEEECCCTTCSSCCEEEESCTTCEECGGGHHHHHHHHHTCTTCCEEECCEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCE
T ss_conf 66550499999998367713772367540256335788777850316889998758998888876521541225540301
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 q~v~G~~p~p~sP~E~lA~k~Ea~~vr~A~~~aGRPGMgv~g~ess~s~~g~~sa~~~g~~~~~Dsh~vsqLNELKiD~g 240 (457)
T d1ntha_ 161 TSVRGKSPIPKSPYEVLAAKTETRLIKNACAMAGRPGMGVKGPETSLSAQGNISADCTGGMTCTDSHEVSQLNELKIDLD 240 (457)
T ss_dssp SCBTTBCCCTTSHHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCSCCSHHHHHTTBCTTSBCTTSEEEEECBTTTEECHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 11137798999879987667789999999986389987654753330025650144227867662446667766520222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 al~~~a~Yvg~~~~im~eqmPi~GGYA~G~e~ttIVdVAtti~a~vm~~A~~~L~~PVHi~~~~T~t~E~l~iag~~~~~ 320 (457)
T d1ntha_ 241 AISVIAHYKGNSDIIMDEQMPIFGGYAGGIEETTIVDVATHINAVLMSSASWHLDGPVHIRWGSTNTRETLMIAGWACAT 320 (457)
T ss_dssp HHHHHHHHHHTTCEEEEECCCEETSSSCSHHHHHHHHHHHHHHHHHHSCCSEEEECCEETTTCCSCSHHHHHHHHHHHHH
T ss_pred HEEHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCEEECCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 30023344112543331445301443678665544439999999999732103336557873354078999999889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 i~~~t~l~~~nq~~p~aG~~T~~~L~EaaAq~itdtASG~evLsG~a~akGv~~n~~~G~Ea~mmae~A~a~A~~e~s~V 400 (457)
T d1ntha_ 321 ISEFTDILSGNQYYPCAGPCTEMCLLEASAQSITDTASGREILSGVASAKGVVTDKTTGMEARMMGEVARATAGVEISEV 400 (457)
T ss_dssp HHHHCCCCEEEECCCSSCSSSHHHHHHHHHHHHHHHHHTCSEEEECCCGGGCSTTCCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98753884224243158980024789877778887513324424745557723588865689999999988612217789
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~i~d~lv~lYEK~~~sa~~GKpF~E~YD~k~l~Pt~E~~~v~~ea~k~l~~Lgl~~ 457 (457)
T d1ntha_ 401 NVILDKLVSLYEKNYASAPAGKTFQECYDVKTVTPTEEYMQVYDGARKKLEDLGLVF 457 (457)
T ss_dssp HHHHHHHHHTTTTCSTTCCCCCCHHHHEETTTTEECHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 899999999988512679999977997501005765999999999999987532459
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34545.18 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CCCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99789999985799999999999999999849999999999888599999987799989999999999999749988899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHH
T ss_conf 99987982899999843373889999999999998641357888860107889998753221100003553021449999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T d1xm9a1 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999873686678999987032799999872412544458899999998775123556788888999987644223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (457)
T d1xm9a1 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 55787654200012788888876466775331677789986047999999873366357889999998888614400048
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~ 400 (457)
T d1xm9a1 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 89999999839768897540375089999999999998607667999999659999999855366767859999999999
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~~~ 457 (457)
T d1xm9a1 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSSCC
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 999861799999999988889999999868998999999999999997498647419
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34542.02 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CCCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99789999985799999999999999999849999999999888599999987799989999999999999749988899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHH
T ss_conf 99987982899999843373889999999999998641357888860107889998753221100003553021449999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T d1xm9a1 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999873686678999987032799999872412544458899999998775123556788888999987644223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (457)
T d1xm9a1 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 55787654200012788888876466775331677789986047999999873366357889999998888614400048
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~ 400 (457)
T d1xm9a1 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 89999999839768897540375089999999999998607667999999659999999855366767859999999999
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~~~ 457 (457)
T d1xm9a1 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457 (457)
T ss_dssp HHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSSCC
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 999861799999999988889999999868998999999999999997498647419
|
| >d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: Nitrogenase iron-molybdenum protein domain: Nitrogenase iron-molybdenum protein, beta chain species: Clostridium pasteurianum [TaxId: 1501]
Probab=100.00 E-value=0 Score=34540.69 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~P~~~C~~~Ga~~~~~gI~~~~~ivHgp~GC~~~~~~~~~~~~~~~~~~~~T~l~E~d~VfGg~ 80 (457)
T d1miob_ 1 LDATPKEIVERKALRINPAKTCQPVGAMYAALGIHNCLPHSHGSQGCCSYHRTVLSRHFKEPAMASTSSFTEGASVFGGG 80 (457)
T ss_dssp CCCCCSSCCCCSSEEESBSCCCTHHHHHHHHTTBTTEEEEEESCHHHHHHHHHHHHHHHSSCCCCEECCCCTTHHHHCSH
T ss_pred CCCCCCCHHCCCCCEECCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCH
T ss_conf 99776202106671027310063878999995538838998883667887747775034688555104677121214858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~kL~~~i~~~~~~~~P~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~p~~~~vi~v~t~gf~g~~~~g~~~a~~~l~~~~ 160 (457)
T d1miob_ 81 SNIKTAVKNIFSLYNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQGIVNYL 160 (457)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTCSCTTCEEEEECCCTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999843997899964774521588888999999984599988608997478657750499999999999873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~vNiig~~~~~~d~~ei~~ll~~~Gl~~~~~~~~s~~~d~~~~~~~~~~~~~g~~l~~~~~~~~A~~niv~ 240 (457)
T d1miob_ 161 SENTGAKNGKINVIPGFVGPADMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSL 240 (457)
T ss_dssp CCCCSCCCSCEEEECCSCCHHHHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 45667777761005789981339999999998599656325510012455567501540799889999984424146536
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~g~~~a~~L~~~~GiP~i~~~~p~G~~~T~~~l~~i~~~~g~~~~~~i~~~r~~~~~~l~~~~~~l~Gkrv~I~~~~ 320 (457)
T d1miob_ 241 GSYASDLGAKTLEKKCKVPFKTLRTPIGVSATDEFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVALLGDP 320 (457)
T ss_dssp SHHHHHHHHHHHHHHSCCCEEEECCCBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 82577899999999868986845865124669999999998747871788998899999999999987089879998582
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~l~~~L~elg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~pDLvig~~~~~~~a~~ 400 (457)
T d1miob_ 321 DEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLISNTYGKFIARE 400 (457)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCSEEEESGGGHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 78899999999719852023038897777899999998648878789968999999999975499999979438999998
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1683 --------------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~gip~i~~~~P~~d~~~~~~~p~~Gy~G~l~l~~~i~n~ll~~~~~~~~~~~~~~~~ 457 (457)
T d1miob_ 401 ENIPFVRFGFPIMDRYGHYYNPKVGYKGAIRLVEEITNVILDKIERECTEEDFEVVR 457 (457)
T ss_dssp HTCCEEECSSCCCSCSSGGGSCSSBTHHHHHHHHHHHHHHHHHHHHHSCTTSCCSCC
T ss_pred CCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 399889940740010376677765376799999999999864887647424575449
|
| >d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: Nitrogenase iron-molybdenum protein domain: Nitrogenase iron-molybdenum protein, beta chain species: Clostridium pasteurianum [TaxId: 1501]
Probab=100.00 E-value=0 Score=34539.07 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~P~~~C~~~Ga~~~~~gI~~~~~ivHgp~GC~~~~~~~~~~~~~~~~~~~~T~l~E~d~VfGg~ 80 (457)
T d1miob_ 1 LDATPKEIVERKALRINPAKTCQPVGAMYAALGIHNCLPHSHGSQGCCSYHRTVLSRHFKEPAMASTSSFTEGASVFGGG 80 (457)
T ss_dssp CCCCCSSCCCCSSEEESBSCCCTHHHHHHHHTTBTTEEEEEESCHHHHHHHHHHHHHHHSSCCCCEECCCCTTHHHHCSH
T ss_pred CCCCCCCHHCCCCCEECCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCH
T ss_conf 99776202106671027310063878999995538838998883667887747775034688555104677121214858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~kL~~~i~~~~~~~~P~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~p~~~~vi~v~t~gf~g~~~~g~~~a~~~l~~~~ 160 (457)
T d1miob_ 81 SNIKTAVKNIFSLYNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQGIVNYL 160 (457)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTCSCTTCEEEEECCCTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999843997899964774521588888999999984599988608997478657750499999999999873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~vNiig~~~~~~d~~ei~~ll~~~Gl~~~~~~~~s~~~d~~~~~~~~~~~~~g~~l~~~~~~~~A~~niv~ 240 (457)
T d1miob_ 161 SENTGAKNGKINVIPGFVGPADMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSL 240 (457)
T ss_dssp CCCCSCCCSCEEEECCSCCHHHHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 45667777761005789981339999999998599656325510012455567501540799889999984424146536
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~g~~~a~~L~~~~GiP~i~~~~p~G~~~T~~~l~~i~~~~g~~~~~~i~~~r~~~~~~l~~~~~~l~Gkrv~I~~~~ 320 (457)
T d1miob_ 241 GSYASDLGAKTLEKKCKVPFKTLRTPIGVSATDEFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVALLGDP 320 (457)
T ss_dssp SHHHHHHHHHHHHHHSCCCEEEECCCBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 82577899999999868986845865124669999999998747871788998899999999999987089879998582
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~l~~~L~elg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~pDLvig~~~~~~~a~~ 400 (457)
T d1miob_ 321 DEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLISNTYGKFIARE 400 (457)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCSEEEESGGGHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 78899999999719852023038897777899999998648878789968999999999975499999979438999998
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------9
Q 000235 1717 --------------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~gip~i~~~~P~~d~~~~~~~p~~Gy~G~l~l~~~i~n~ll~~~~~~~~~~~~~~~~ 457 (457)
T d1miob_ 401 ENIPFVRFGFPIMDRYGHYYNPKVGYKGAIRLVEEITNVILDKIERECTEEDFEVVR 457 (457)
T ss_dssp HTCCEEECSSCCCSCSSGGGSCSSBTHHHHHHHHHHHHHHHHHHHHHSCTTSCCSCC
T ss_pred CCCCEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 399889940740010376677765376799999999999864887647424575449
|
| >d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Outer membrane efflux proteins (OEP) superfamily: Outer membrane efflux proteins (OEP) family: Outer membrane efflux proteins (OEP) domain: Outer membrane protein OprM species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=34475.39 Aligned_cols=1 Identities=100% Similarity=-0.195 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~d~tL~~~i~~Al~nnp~l~~a~~~~~~a~~~~~~a 80 (456)
T d1wp1a_ 1 CSLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQ 80 (456)
T ss_dssp CCCCCCCCCCCCCSCSSCCCSTTCCCCCCSCSSCGGGSCHHHHBCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999979998765666655455677656765652599865988899999999970999999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~a~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 160 (456)
T d1wp1a_ 81 RADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVAS 160 (456)
T ss_dssp HHTTSCCCBCCCBCCCCBCCTTTSSSSSCCBCCCEEEECBEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42408805786223320366655678887766432112220112334335677788888888888899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 v~~aY~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~ 240 (456)
T d1wp1a_ 161 VATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGS 240 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998777899999999999999999888637852010004788999999889999999999999999998289
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~pdl~~~~~~~~~a~~~~~~a~~~~~P~l~l~~~~~~~~~~~~~~~~~~ 320 (456)
T d1wp1a_ 241 GIPANLPQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLSGLFDAG 320 (456)
T ss_dssp CCCSSCCCCCCTTSCCBCCCCCCCTTHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCEEEESSGGGTTSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97532100124211368778546799999851002678999998899999999753013210000344544566444566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~g~~~~~pl~~g~~~~~~~~~a~~~~~~a~~~~~~~~~~i~~~v~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 400 (456)
T d1wp1a_ 321 SGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLA 400 (456)
T ss_dssp CEECCEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54322130112320000001112568999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~~~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a~~~L~~alGg~~~~~~~~ 456 (456)
T d1wp1a_ 401 DKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQQTVT 456 (456)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSSCCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99998799619999999999999999999999999999999999837999866689
|
| >d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Outer membrane efflux proteins (OEP) superfamily: Outer membrane efflux proteins (OEP) family: Outer membrane efflux proteins (OEP) domain: Outer membrane protein OprM species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=34472.47 Aligned_cols=1 Identities=0% Similarity=-0.827 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~d~tL~~~i~~Al~nnp~l~~a~~~~~~a~~~~~~a 80 (456)
T d1wp1a_ 1 CSLIPDYQRPEAPVAAAYPQGQAYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQ 80 (456)
T ss_dssp CCCCCCCCCCCCCSCSSCCCSTTCCCCCCSCSSCGGGSCHHHHBCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999979998765666655455677656765652599865988899999999970999999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~a~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 160 (456)
T d1wp1a_ 81 RADLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYGVTLGTTAWELDLFGRLRSLRDQALEQYLATEQAQRSAQTTLVAS 160 (456)
T ss_dssp HHTTSCCCBCCCBCCCCBCCTTTSSSSSCCBCCCEEEECBEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42408805786223320366655678887766432112220112334335677788888888888899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 v~~aY~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg~ 240 (456)
T d1wp1a_ 161 VATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGS 240 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998777899999999999999999888637852010004788999999889999999999999999998289
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~pdl~~~~~~~~~a~~~~~~a~~~~~P~l~l~~~~~~~~~~~~~~~~~~ 320 (456)
T d1wp1a_ 241 GIPANLPQGLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLSGLFDAG 320 (456)
T ss_dssp CCCSSCCCCCCTTSCCBCCCCCCCTTHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCEEEESSGGGTTSTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97532100124211368778546799999851002678999998899999999753013210000344544566444566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~g~~~~~pl~~g~~~~~~~~~a~~~~~~a~~~~~~~~~~i~~~v~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 400 (456)
T d1wp1a_ 321 SGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDLVKASDEYYQLA 400 (456)
T ss_dssp CEECCEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54322130112320000001112568999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a~~~L~~alGg~~~~~~~~ 456 (456)
T d1wp1a_ 401 DKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGGGWNQQTVT 456 (456)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSSCCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99998799619999999999999999999999999999999999837999866689
|
| >d2ex2a1 e.3.1.3 (A:22-477) DD-carboxypeptidase DacB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: Dac-like domain: DD-carboxypeptidase DacB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34468.55 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~~~lp~~a~~gi~v~d~~~g~~l~~~n~~~~~~PAS~~Kl~Tt~aAL~~LGpd~rf~T~v~~~g~~~~g~l~GdL 80 (456)
T d2ex2a1 1 NVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDL 80 (456)
T ss_dssp CHHHHHTTSCTTCEEEEEEEETTCSSCSEEESTTSCBCCGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEECCCE
T ss_conf 96799853899886999999899998888867998658669999999999998619987698899961765476554558
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~l~G~GDP~l~~~~l~~l~~~l~~~Gi~~I~G~iv~D~s~f~~~~~~~~w~~~d~~~~Y~a~~s~l~~n~N~~~~~~~~~ 160 (456)
T d2ex2a1 81 VARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYSA 160 (456)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHTTCCEEESCEEEECTTBCSCSSCTTCCGGGTTSGGGCCCCSCCSGGGEEEEEEECC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEC
T ss_conf 99826898747879999999999729853334068603335666668897756444344577411120377368999743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~n~~~~~G~~p~~~~~~~~~~~v~dp~~~a~~~f~~ 240 (456)
T d2ex2a1 161 PKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKY 240 (456)
T ss_dssp SSTTSBCEEECCTTSCCEEEEEEEEECTTCSTTTTCCEEEEEEGGGEEEEEEEEECCSSCEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 77884115614776762365456860467766415642203588766999502327887620342034488999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~L~~~Gi~v~g~~~~~~~~~~~~~~la~~~S~pL~eii~~mnk~S~N~~AE~L~~~lg~~~~~~~~s~~~g~~~~~~~l~ 320 (456)
T d2ex2a1 241 ELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILR 320 (456)
T ss_dssp HHHHTTCEESSCEEEECSCCCCCEEEEEEECSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHH
T ss_pred HHHHCCCEEECCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99865865313034213126785699886070199999998522748899999999998753899836779999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~Gi~~~~~~l~DGSGLSr~n~isp~~l~~lL~~~~~~~~~~~~~~sLPiaG~~GTL~~R~~~~~~~~~g~v~aKTGTL 400 (456)
T d2ex2a1 321 QQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGSL 400 (456)
T ss_dssp HTSCCCCTTCBCCCSSSCCTTCBBCHHHHHHHHHHHHHTHHHHCCGGGSCBTTTSGGGTTCHHHHHTTCTTTEEEEEEEE
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 86177867726616877653454489999999999872940678998398157888644545667767677499998504
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~V~~LaGyv~~~~G~~~~Fsi~vN~~~~~~~~~r~~~~~i~~f~~~l~~~~~~~~ 456 (456)
T d2ex2a1 401 QGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN 456 (456)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEEESCCCCGGGTTSTTHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89589899999799999999999669999856777779999999999999996169
|
| >d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34466.77 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~r~e~d~~g~~~~~~~~l~G~~t~r~~~~F~i~~~~~~~~~i~a~~~vK~A~A~a~~~~Gli~~~~a~aI~~a~~eI~~~ 80 (456)
T d1fuoa_ 1 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAG 80 (456)
T ss_dssp CEEEEETTEEEEECTTCCCCHHHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 97541789773077667501865999966897888899999999999999999999985999999999999999999808
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~f~~~~~~~g~g~~~~~~v~~vi~~~~~e~~g~~~~~~~~~~~~~~v~~~~s~~d~~~ta~~l~~~~~~~~~l~~~ 160 (456)
T d1fuoa_ 81 QHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQ 160 (456)
T ss_dssp TTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75444426888751001010005878877779982765565543213567887421566556999999999987657888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 l~~l~~~L~~~A~~~~~tvm~GrTHlQ~A~PiTfG~~~~~~~~~l~R~~~RL~~~~~r~~~~~lGGaa~Gt~~~~~~~~~ 240 (456)
T d1fuoa_ 161 LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYA 240 (456)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCEETTEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHH
T ss_pred HHHHHHHHHHHHHHHCCCEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999999988448431147752777987559999999999997699999999999986888875557544681788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~l~~~~~~~~~~~~n~~~~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~s~~~~e~~e~~~~~~~~GSSiMP~ 320 (456)
T d1fuoa_ 241 RRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPG 320 (456)
T ss_dssp HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTCTT
T ss_pred HHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHCCC
T ss_conf 88888764203678453367899988415999999999999999999999999997476151100011244542221266
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 K~NP~~~E~i~~~a~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~~l~~~~~l~~~~~~~~~~~i~~l~vn~e~m~~~l~ 400 (456)
T d1fuoa_ 321 KVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLN 400 (456)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHH
T ss_conf 66835678888999973455459999871381101245468899999999999999999999887509888999999987
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~s~~l~taLa~~iG~~~A~eia~~a~~~g~~lre~~~~~~~ls~eeld~~ldP~~m 456 (456)
T d1fuoa_ 401 ESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 456 (456)
T ss_dssp TCSTTHHHHHTTSCHHHHHHHHHHHHHHTCCHHHHHHHTTSSCHHHHHHHCCGGGC
T ss_pred HCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCHHHC
T ss_conf 25309988552414999999999999929989999999689999999976795009
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34466.28 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 srlivvsnr~~~~~~~~~~~gGl~~al~~~~~~~~g~Wvgw~g~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~Y~gf~ 80 (456)
T d1uqta_ 1 SRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 80 (456)
T ss_dssp CCEEEEEEECCCCC----CCCHHHHHHHHHHHHHCEEEEEEEEEESCCSSCCEEEEETTEEEEEEEECHHHHHHHTTTHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 97899979999788877899618997299995179789966998876642345554058516995699999999998715
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 n~~LWpl~H~~~~~~~~~~~~~~~Y~~vN~~fA~~l~~~~~~~d~iwvhDyhl~llp~~lR~~~~~~~i~~flH~pfP~~ 160 (456)
T d1uqta_ 81 NAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTP 160 (456)
T ss_dssp HHTHHHHHTTCGGGCCCCHHHHHHHHHHHHHHHHHHGGGCCTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 44262101576665440378888899999999999987256898699954525556999998589985899968999985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~fr~lp~~~~il~~ll~~d~igf~~~~~~~~fl~~~~~ll~~~~~~~~~i~~~gr~v~v~~~p~GID~~~~~~~~~~~~ 240 (456)
T d1uqta_ 161 EIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPL 240 (456)
T ss_dssp HHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCC
T ss_pred HHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCCCCHHHHHHCCCHH
T ss_conf 77554850699997763226200358999999999999973861126872995681553012067656266543114077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~l~~~~~~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~i 320 (456)
T d1uqta_ 241 PPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRI 320 (456)
T ss_dssp CHHHHHHHHHTTTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999977752898599993787432065899999999987584314618999974875345688999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 n~~~~~~~~~~~v~~~~~~~~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIlS~~~G~~~~l~~g~lV 400 (456)
T d1uqta_ 321 NGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIV 400 (456)
T ss_dssp HHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCTTSEEE
T ss_pred HHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCEEEE
T ss_conf 76521279875021158767888767775305452587657888399999990898889758972897877885976998
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 nP~d~~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~~~~~~W~~~fl~~l~~~~~r 456 (456)
T d1uqta_ 401 NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPR 456 (456)
T ss_dssp CTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 95999999999999974999999999999989999789999999999998755179
|
| >d2ex2a1 e.3.1.3 (A:22-477) DD-carboxypeptidase DacB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: Dac-like domain: DD-carboxypeptidase DacB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34466.02 Aligned_cols=1 Identities=0% Similarity=-0.394 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~~lp~~a~~gi~v~d~~~g~~l~~~n~~~~~~PAS~~Kl~Tt~aAL~~LGpd~rf~T~v~~~g~~~~g~l~GdL 80 (456)
T d2ex2a1 1 NVDEYITQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDL 80 (456)
T ss_dssp CHHHHHTTSCTTCEEEEEEEETTCSSCSEEESTTSCBCCGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHCCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEECCCE
T ss_conf 96799853899886999999899998888867998658669999999999998619987698899961765476554558
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~l~G~GDP~l~~~~l~~l~~~l~~~Gi~~I~G~iv~D~s~f~~~~~~~~w~~~d~~~~Y~a~~s~l~~n~N~~~~~~~~~ 160 (456)
T d2ex2a1 81 VARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYSA 160 (456)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHTTCCEEESCEEEECTTBCSCSSCTTCCGGGTTSGGGCCCCSCCSGGGEEEEEEECC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEEC
T ss_conf 99826898747879999999999729853334068603335666668897756444344577411120377368999743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~n~~~~~G~~p~~~~~~~~~~~v~dp~~~a~~~f~~ 240 (456)
T d2ex2a1 161 PKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKY 240 (456)
T ss_dssp SSTTSBCEEECCTTSCCEEEEEEEEECTTCSTTTTCCEEEEEEGGGEEEEEEEEECCSSCEEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 77884115614776762365456860467766415642203588766999502327887620342034488999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~L~~~Gi~v~g~~~~~~~~~~~~~~la~~~S~pL~eii~~mnk~S~N~~AE~L~~~lg~~~~~~~~s~~~g~~~~~~~l~ 320 (456)
T d2ex2a1 241 ELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILR 320 (456)
T ss_dssp HHHHTTCEESSCEEEECSCCCCCEEEEEEECSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCBCHHHHHHHHHHHHH
T ss_pred HHHHCCCEEECCEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99865865313034213126785699886070199999998522748899999999998753899836779999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~Gi~~~~~~l~DGSGLSr~n~isp~~l~~lL~~~~~~~~~~~~~~sLPiaG~~GTL~~R~~~~~~~~~g~v~aKTGTL 400 (456)
T d2ex2a1 321 QQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGSL 400 (456)
T ss_dssp HTSCCCCTTCBCCCSSSCCTTCBBCHHHHHHHHHHHHHTHHHHCCGGGSCBTTTSGGGTTCHHHHHTTCTTTEEEEEEEE
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 86177867726616877653454489999999999872940678998398157888644545667767677499998504
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~V~~LaGyv~~~~G~~~~Fsi~vN~~~~~~~~~r~~~~~i~~f~~~l~~~~~~~~ 456 (456)
T d2ex2a1 401 QGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN 456 (456)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEEESCCCCGGGTTSTTHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89589899999799999999999669999856777779999999999999996169
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34464.89 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
+
T Consensus 1 srlivvsnr~~~~~~~~~~~gGl~~al~~~~~~~~g~Wvgw~g~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~Y~gf~ 80 (456)
T d1uqta_ 1 SRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFS 80 (456)
T ss_dssp CCEEEEEEECCCCC----CCCHHHHHHHHHHHHHCEEEEEEEEEESCCSSCCEEEEETTEEEEEEEECHHHHHHHTTTHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 97899979999788877899618997299995179789966998876642345554058516995699999999998715
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 n~~LWpl~H~~~~~~~~~~~~~~~Y~~vN~~fA~~l~~~~~~~d~iwvhDyhl~llp~~lR~~~~~~~i~~flH~pfP~~ 160 (456)
T d1uqta_ 81 NAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTP 160 (456)
T ss_dssp HHTHHHHHTTCGGGCCCCHHHHHHHHHHHHHHHHHHGGGCCTTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 44262101576665440378888899999999999987256898699954525556999998589985899968999985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~fr~lp~~~~il~~ll~~d~igf~~~~~~~~fl~~~~~ll~~~~~~~~~i~~~gr~v~v~~~p~GID~~~~~~~~~~~~ 240 (456)
T d1uqta_ 161 EIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPL 240 (456)
T ss_dssp HHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCC
T ss_pred HHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCCCCHHHHHHCCCHH
T ss_conf 77554850699997763226200358999999999999973861126872995681553012067656266543114077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~l~~~~~~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~i 320 (456)
T d1uqta_ 241 PPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRI 320 (456)
T ss_dssp CHHHHHHHHHTTTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999977752898599993787432065899999999987584314618999974875345688999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 n~~~~~~~~~~~v~~~~~~~~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIlS~~~G~~~~l~~g~lV 400 (456)
T d1uqta_ 321 NGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIV 400 (456)
T ss_dssp HHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCTTSEEE
T ss_pred HHHHCCCCCCCEEECCCCCCHHHHHHHHHHHCEEECCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCEEEE
T ss_conf 76521279875021158767888767775305452587657888399999990898889758972897877885976998
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
+
T Consensus 401 nP~d~~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~~~~~~W~~~fl~~l~~~~~r 456 (456)
T d1uqta_ 401 NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPR 456 (456)
T ss_dssp CTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 95999999999999974999999999999989999789999999999998755179
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=100.00 E-value=0 Score=34463.71 Aligned_cols=1 Identities=0% Similarity=-0.993 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~~~~~~~~~~~~ve~~~~~~~~~r~~~~~~~~~n~~~l~~~~v~iDl~sDs~t~am~~~~~aa~~~GDd~Y~~dpt~~~l 80 (456)
T d1c7ga_ 1 MNYPAEPFRIKSVETVSMISRDERVKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMIGDEAYAGSENFYHL 80 (456)
T ss_dssp CCCCCCSEEEEEEEECCCCCHHHHHHHHHHTTTCGGGSCGGGCSEECSCSSSCCCEEHHHHHHTTSCCCCSSSCHHHHHH
T ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCHHCCCCCHHHHH
T ss_conf 99888863566775358899999999999738981236535604675347896526499999875465011689269999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 E~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (456)
T d1c7ga_ 81 EKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDL 160 (456)
T ss_dssp HHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCH
T ss_pred HHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 99999996998499889879999999998327897671576628879999973954343234434520035775566899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i 240 (456)
T d1c7ga_ 161 NKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDI 240 (456)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCCCEECHHHHHHHHHHHHHCCCEEEEECCHHHCCHHHHCCCCCCCCCCCHHHH
T ss_conf 99999854317764215874000344542200298899999999986997999753243254453035556589876662
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~ 320 (456)
T d1c7ga_ 241 VHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVK 320 (456)
T ss_dssp HHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 24433566607972544455661059980788999999975014678733215668899999987777308899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~ 400 (456)
T d1c7ga_ 321 QVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKL 400 (456)
T ss_dssp HHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999985167754577875046742544467773100278999999997293442467645345776667667754
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1683 -------------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~i~gl~~~~e~~~lr~f~~~~~~~ 456 (456)
T d1c7ga_ 401 ETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQLRFFTARFDFI 456 (456)
T ss_dssp CEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGGCCCEEEEECCSSSHHHHCEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEC
T ss_conf 42897558666899999999999999996455338956874265221245420119
|
| >d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Fumarase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34463.20 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~r~e~d~~g~~~~~~~~l~G~~t~r~~~~F~i~~~~~~~~~i~a~~~vK~A~A~a~~~~Gli~~~~a~aI~~a~~eI~~~ 80 (456)
T d1fuoa_ 1 VRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAG 80 (456)
T ss_dssp CEEEEETTEEEEECTTCCCCHHHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 97541789773077667501865999966897888899999999999999999999985999999999999999999808
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~f~~~~~~~g~g~~~~~~v~~vi~~~~~e~~g~~~~~~~~~~~~~~v~~~~s~~d~~~ta~~l~~~~~~~~~l~~~ 160 (456)
T d1fuoa_ 81 QHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQ 160 (456)
T ss_dssp TTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75444426888751001010005878877779982765565543213567887421566556999999999987657888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 l~~l~~~L~~~A~~~~~tvm~GrTHlQ~A~PiTfG~~~~~~~~~l~R~~~RL~~~~~r~~~~~lGGaa~Gt~~~~~~~~~ 240 (456)
T d1fuoa_ 161 LKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYA 240 (456)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCEETTEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHH
T ss_pred HHHHHHHHHHHHHHHCCCEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99999999999988448431147752777987559999999999997699999999999986888875557544681788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~l~~~~~~~~~~~~n~~~~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~s~~~~e~~e~~~~~~~~GSSiMP~ 320 (456)
T d1fuoa_ 241 RRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPG 320 (456)
T ss_dssp HHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTCTT
T ss_pred HHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHCCC
T ss_conf 88888764203678453367899988415999999999999999999999999997476151100011244542221266
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 K~NP~~~E~i~~~a~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~~~l~~~~~l~~~~~~~~~~~i~~l~vn~e~m~~~l~ 400 (456)
T d1fuoa_ 321 KVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLN 400 (456)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHH
T ss_conf 66835678888999973455459999871381101245468899999999999999999999887509888999999987
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
=
T Consensus 401 ~s~~l~taLa~~iG~~~A~eia~~a~~~g~~lre~~~~~~~ls~eeld~~ldP~~m 456 (456)
T d1fuoa_ 401 ESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEFDSWVRPEQM 456 (456)
T ss_dssp TCSTTHHHHHTTSCHHHHHHHHHHHHHHTCCHHHHHHHTTSSCHHHHHHHCCGGGC
T ss_pred HCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHCCHHHC
T ss_conf 25309988552414999999999999929989999999689999999976795009
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=100.00 E-value=0 Score=34460.80 Aligned_cols=1 Identities=0% Similarity=-1.059 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~ve~~~~~~~~~r~~~~~~~~~n~~~l~~~~v~iDl~sDs~t~am~~~~~aa~~~GDd~Y~~dpt~~~l 80 (456)
T d1c7ga_ 1 MNYPAEPFRIKSVETVSMISRDERVKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMIGDEAYAGSENFYHL 80 (456)
T ss_dssp CCCCCCSEEEEEEEECCCCCHHHHHHHHHHTTTCGGGSCGGGCSEECSCSSSCCCEEHHHHHHTTSCCCCSSSCHHHHHH
T ss_pred CCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCHHCCCCCHHHHH
T ss_conf 99888863566775358899999999999738981236535604675347896526499999875465011689269999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 E~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 160 (456)
T d1c7ga_ 81 EKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDL 160 (456)
T ss_dssp HHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCH
T ss_pred HHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 99999996998499889879999999998327897671576628879999973954343234434520035775566899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i 240 (456)
T d1c7ga_ 161 NKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDI 240 (456)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCCCEECHHHHHHHHHHHHHCCCEEEEECCHHHCCHHHHCCCCCCCCCCCHHHH
T ss_conf 99999854317764215874000344542200298899999999986997999753243254453035556589876662
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~r~~ 320 (456)
T d1c7ga_ 241 VHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVK 320 (456)
T ss_dssp HHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 24433566607972544455661059980788999999975014678733215668899999987777308899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~ 400 (456)
T d1c7ga_ 321 QVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKL 400 (456)
T ss_dssp HHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999985167754577875046742544467773100278999999997293442467645345776667667754
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------9
Q 000235 1717 -------------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~i~gl~~~~e~~~lr~f~~~~~~~ 456 (456)
T d1c7ga_ 401 ETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQLRFFTARFDFI 456 (456)
T ss_dssp CEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGGCCCEEEEECCSSSHHHHCEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEC
T ss_conf 42897558666899999999999999996455338956874265221245420119
|
| >d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Group I dsDNA viruses family: Papovaviridae-like VP domain: Papillomavirus L1 protein species: Human papillomavirus type 16 [TaxId: 333760]
Probab=100.00 E-value=0 Score=34400.13 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 kvlsTdeyV~rT~ifyha~s~RLLtVGhPyf~i~~~~~~~v~VPKVS~nQyRVFR~~LPDPNkFal~D~~~ynP~~eRLV 80 (455)
T d1dzla_ 1 KVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLV 80 (455)
T ss_dssp CCCCGGGTCEEEEEEEEEECSCEEEEEBSSSCEECSSSCCEEECBCCTTBCEEEEEECCCTTTSCCSCCTTSCTTTEEEE
T ss_pred CCCCCCCCEECCCEEEECCCCEEEECCCCCEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 95650044711455896587500204787526466999979813327860579985279986367888767698765677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 W~l~GieigRG~PLGvg~tGhPlfNk~~DtENp~~y~~~~~~D~R~nvs~DpKQ~Ql~ivGC~P~~GehWd~a~~C~~~~ 160 (455)
T d1dzla_ 81 WACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVA 160 (455)
T ss_dssp EEEEEEEEEECSCSBCCCEEEEEECEEEECSCCSSCCCCCCSCCCEEEEEBCCEEEEEEEESSCCEEEEEEECCCCSSSC
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 88888982378888027767753346654568654788888766505145732247999835678767566678798899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~G~CPPieL~ns~IeDGDM~DiGfGamnF~~Lq~~kSdvPLDIv~sicKyPD~LkM~~d~yGds~FF~~rREQ~yaRH 240 (455)
T d1dzla_ 161 VQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRH 240 (455)
T ss_dssp CCTTCCCCEEEEEEECCTTCEECCSSCSBCHHHHCTTSCSSCHHHHTSCEEEECHHHHHHCSSCCSCSEEEEEEECEEEE
T ss_pred CCCCCCCCEEEECCCCCCCCEEECCCCCCCHHHHCCCCCCCCHHHHCCCCCCCHHHHCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 89899898666532202783452255644667761355689747735520485566315565465668976578666676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~f~R~G~~Ge~iP~~~y~~~~~~~~~~~s~~Y~~tpSGSlvsSd~QlFNRPyWLqrAQG~NNGIcW~NqlFVTVvDnTR~ 320 (455)
T d1dzla_ 241 LFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRS 320 (455)
T ss_dssp EEEECSCCSSCCCGGGSCCCCTTTTSCCCCCEEEEEECCCCCTTTCCSSSEEECSCCSSSSCSEEGGGCCEEEEEECSBC
T ss_pred HHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCHHHHHCCCCCCCEEECCEEEEEEEECCCC
T ss_conf 53147766887971233768887676676425655874526354011166133323026777157767679998877888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 TNftIsv~~~~~~~~Y~a~~fkeYlRHvEEyeLsfIfQLCkV~Lt~Evla~ih~Mnp~ILe~WnlG~~Ppp~~sleDtYR 400 (455)
T d1dzla_ 321 TNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYR 400 (455)
T ss_dssp CCEEEEEESCSCCSSCCGGGEEEEEEEEEEEEEEEEEEEEEEECCHHHHHHHHHHCTHHHHHSCCCCCCCTTCCHHHHHH
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf 64899974689734425677789876564410053747753047899999987058336752606740698987322112
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------~ 1683 (1815)
-
T Consensus 401 yi~S~At~Cp~~~pp~ek~DPy~~~~FW~VDL~er~S~dLdQfpLGRkFL~Q~Gl 455 (455)
T d1dzla_ 401 FVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL 455 (455)
T ss_dssp HHHHHHTTCSCCCCCCCCCCTTTTSCCEEEECTTCCBSCGGGSHHHHHHHHHHCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHCCC
T ss_conf 3024031488989998888975577213544611025454557504555542379
|
| >d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Group I dsDNA viruses family: Papovaviridae-like VP domain: Papillomavirus L1 protein species: Human papillomavirus type 16 [TaxId: 333760]
Probab=100.00 E-value=0 Score=34396.71 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 kvlsTdeyV~rT~ifyha~s~RLLtVGhPyf~i~~~~~~~v~VPKVS~nQyRVFR~~LPDPNkFal~D~~~ynP~~eRLV 80 (455)
T d1dzla_ 1 KVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLV 80 (455)
T ss_dssp CCCCGGGTCEEEEEEEEEECSCEEEEEBSSSCEECSSSCCEEECBCCTTBCEEEEEECCCTTTSCCSCCTTSCTTTEEEE
T ss_pred CCCCCCCCEECCCEEEECCCCEEEECCCCCEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 95650044711455896587500204787526466999979813327860579985279986367888767698765677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 W~l~GieigRG~PLGvg~tGhPlfNk~~DtENp~~y~~~~~~D~R~nvs~DpKQ~Ql~ivGC~P~~GehWd~a~~C~~~~ 160 (455)
T d1dzla_ 81 WACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVA 160 (455)
T ss_dssp EEEEEEEEEECSCSBCCCEEEEEECEEEECSCCSSCCCCCCSCCCEEEEEBCCEEEEEEEESSCCEEEEEEECCCCSSSC
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 88888982378888027767753346654568654788888766505145732247999835678767566678798899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~G~CPPieL~ns~IeDGDM~DiGfGamnF~~Lq~~kSdvPLDIv~sicKyPD~LkM~~d~yGds~FF~~rREQ~yaRH 240 (455)
T d1dzla_ 161 VQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRH 240 (455)
T ss_dssp CCTTCCCCEEEEEEECCTTCEECCSSCSBCHHHHCTTSCSSCHHHHTSCEEEECHHHHHHCSSCCSCSEEEEEEECEEEE
T ss_pred CCCCCCCCEEEECCCCCCCCEEECCCCCCCHHHHCCCCCCCCHHHHCCCCCCCHHHHCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 89899898666532202783452255644667761355689747735520485566315565465668976578666676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~f~R~G~~Ge~iP~~~y~~~~~~~~~~~s~~Y~~tpSGSlvsSd~QlFNRPyWLqrAQG~NNGIcW~NqlFVTVvDnTR~ 320 (455)
T d1dzla_ 241 LFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRS 320 (455)
T ss_dssp EEEECSCCSSCCCGGGSCCCCTTTTSCCCCCEEEEEECCCCCTTTCCSSSEEECSCCSSSSCSEEGGGCCEEEEEECSBC
T ss_pred HHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCHHHHHCCCCCCCEEECCEEEEEEEECCCC
T ss_conf 53147766887971233768887676676425655874526354011166133323026777157767679998877888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 TNftIsv~~~~~~~~Y~a~~fkeYlRHvEEyeLsfIfQLCkV~Lt~Evla~ih~Mnp~ILe~WnlG~~Ppp~~sleDtYR 400 (455)
T d1dzla_ 321 TNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYR 400 (455)
T ss_dssp CCEEEEEESCSCCSSCCGGGEEEEEEEEEEEEEEEEEEEEEEECCHHHHHHHHHHCTHHHHHSCCCCCCCTTCCHHHHHH
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf 64899974689734425677789876564410053747753047899999987058336752606740698987322112
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------~ 1717 (1815)
-
T Consensus 401 yi~S~At~Cp~~~pp~ek~DPy~~~~FW~VDL~er~S~dLdQfpLGRkFL~Q~Gl 455 (455)
T d1dzla_ 401 FVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL 455 (455)
T ss_dssp HHHHHHTTCSCCCCCCCCCCTTTTSCCEEEECTTCCBSCGGGSHHHHHHHHHHCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHCCC
T ss_conf 3024031488989998888975577213544611025454557504555542379
|
| >d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34392.92 Aligned_cols=1 Identities=0% Similarity=-1.124 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 lw~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Aha~~l~~~gii~~~~~~~I~~al~~i~~~~~~~~~~~~~~~~e 80 (455)
T d1tj7a_ 1 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAE 80 (455)
T ss_dssp CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCCS
T ss_pred CCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98866787623999998166889999999999999999999998799899999999999999999997699766889854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 dv~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~GrTH~Q~A~P 160 (455)
T d1tj7a_ 81 DIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQP 160 (455)
T ss_dssp SHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 08999999998503710201257766022899999998862101678888888999998877600210008987542166
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lG~~a~~g~~~~~~~~~~a~~Lg~~~~~~n~~~~~~~rd~~~e~~~~l 240 (455)
T d1tj7a_ 161 VTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAA 240 (455)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHHH
T ss_conf 08999999999998779999999998788887503456567676227999998188754677511420357999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~L~ria~Dl~l~~s~e~~~~~~~~~~~~GSSiMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~rd~~ 320 (455)
T d1tj7a_ 241 AIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQ 320 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 77775799999999774202322035053124552010203596699999769999986899999998646278771699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~l~~~~~~~~~~l~~~~~~i~~l~vn~erm~~~~~~~~~~at~la~~Lv~kgi~freAh~~V~~~v~~A~~~g~~l 400 (455)
T d1tj7a_ 321 EDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPL 400 (455)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99988999999999899999876222120101477776256458999999999859999999999999999999969988
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000235 1683 ------------------------------------------------------T 1683 (1815)
Q Consensus 1683 ------------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~el~l~e~~~~~~~~~~di~~~ldp~~~v~~r~s~GG~ap~~V~~~i~~ar~~Lg 455 (455)
T d1tj7a_ 401 EDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG 455 (455)
T ss_dssp GGSCHHHHTTTCTTCCTTHHHHTSHHHHHHTCCSTTCCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9974989987541588999985799999875758899989999999999998609
|
| >d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Argininosuccinate lyase/delta-crystallin species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34389.90 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 lw~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Aha~~l~~~gii~~~~~~~I~~al~~i~~~~~~~~~~~~~~~~e 80 (455)
T d1tj7a_ 1 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAE 80 (455)
T ss_dssp CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSCCS
T ss_pred CCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98866787623999998166889999999999999999999998799899999999999999999997699766889854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 dv~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~GrTH~Q~A~P 160 (455)
T d1tj7a_ 81 DIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQP 160 (455)
T ss_dssp SHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 08999999998503710201257766022899999998862101678888888999998877600210008987542166
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lG~~a~~g~~~~~~~~~~a~~Lg~~~~~~n~~~~~~~rd~~~e~~~~l 240 (455)
T d1tj7a_ 161 VTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAA 240 (455)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCTTCTTTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHCHHHHHHHHHHH
T ss_conf 08999999999998779999999998788887503456567676227999998188754677511420357999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~L~ria~Dl~l~~s~e~~~~~~~~~~~~GSSiMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~rd~~ 320 (455)
T d1tj7a_ 241 AIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQ 320 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTCCEECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 77775799999999774202322035053124552010203596699999769999986899999998646278771699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~l~~~~~~~~~~l~~~~~~i~~l~vn~erm~~~~~~~~~~at~la~~Lv~kgi~freAh~~V~~~v~~A~~~g~~l 400 (455)
T d1tj7a_ 321 EDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPL 400 (455)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 99988999999999899999876222120101477776256458999999999859999999999999999999969988
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------9
Q 000235 1717 ------------------------------------------------------A 1717 (1815)
Q Consensus 1717 ------------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~el~l~e~~~~~~~~~~di~~~ldp~~~v~~r~s~GG~ap~~V~~~i~~ar~~Lg 455 (455)
T d1tj7a_ 401 EDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARLG 455 (455)
T ss_dssp GGSCHHHHTTTCTTCCTTHHHHTSHHHHHHTCCSTTCCSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9974989987541588999985799999875758899989999999999998609
|
| >d1ua4a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: Ribokinase-like family: ADP-specific Phosphofructokinase/Glucokinase domain: ADP-dependent glucokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=34309.69 Aligned_cols=1 Identities=100% Similarity=2.098 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
|
T Consensus 1 ~~w~~~y~~a~~~~~~~~~~~~~v~~gyN~NvDai~~~~~~~l~~ll~~~~~~~v~~~~~~~p~~I~s~~dl~~~~~~~m 80 (454)
T d1ua4a_ 1 PTWEELYKNAIEKAIKSVPKVKGVLLGYNTNIDAIKYLDSKDLEERIIKAGKEEVIKYSEELPDKINTVSQLLGSILWSI 80 (454)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCCCEEEESCCEEEEEEECCHHHHHHHHHHHCHHHHHHHHHSCCSSBCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 96799999999999841314474799974366589966899999999750816444444228702399999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~G~aaE~~v~~~~~~~~~~~~~~~~~r~GGnAgimAn~la~l~~~~Vi~~~p~~sk~qa~~f~~~~i~~P~~~~~~~~l 160 (454)
T d1ua4a_ 81 RRGKAAELFVESCPVRFYMKRWGWNELRMGGQAGIMANLLGGVYGVPVIVHVPQLSRLQANLFLDGPIYVPTLENGEVKL 160 (454)
T ss_dssp HHTCCEEEEBCCHHHHHHHHHHCCSEEEEESHHHHHHHHHTTTTCCCEEECCSCCCHHHHTTSCSSSEEEEEEETTEEEE
T ss_pred HCCCCEEEECCCHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCEEECCCEEE
T ss_conf 47971466427778999998577523731878999999998528961898257752888998337873353354585445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~p~e~~~~e~~~IHlIlEY~~G~~wg~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~dl~vlSGlqmm~~~~ 240 (454)
T d1ua4a_ 161 IHPKEFSGDEENCIHYIYEFPRGFRVFEFEAPRENRFIGSADDYNTTLFIREEFRESFSEVIKNVQLAILSGLQALTKEN 240 (454)
T ss_dssp ECGGGCSCCCCCCEEEEEEECTTCEETTEECSSCEEEEEECCSSGGGTCCCGGGSTTHHHHGGGCSEEEECCGGGCCTTT
T ss_pred CCCHHHCCCCCCCEEEEEEECCCCEECCEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf 48243257997636999980899960366668776689867888755714398999999726698889997610156225
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~l~~~~~~~i~IH~ElAs~~d~~l~~~i~~vlp~vDSlGmNEqEL~~l~~~l~~~~l~~~~~~~~~~~~~ 320 (454)
T d1ua4a_ 241 YKEPFEIVKSNLEVLNEREIPVHLEFAFTPDEKVREEILNVLGMFYSVGLNEVELASIMEILGEKKLAKELLAHDPVDPI 320 (454)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECCCCCCHHHHHHHHHHGGGCSEEEECHHHHHHHHHHTTCHHHHHHTTSSSSCCHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 68899999999974485688568984322179999999985773772888999999999972799755200258962459
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~v~~~l~~l~~~~~L~RIHvHTl~y~~~~t~~~~~~~~~Ala~aa~~A~~~a~~~~~~~~~~~~~~l~~p~~~~~~~~~~ 400 (454)
T d1ua4a_ 321 AVTEAMLKLAKKTGVKRIHFHTYGYYLALTEYKGEHVRDALLFAALAAAAKAMKGNITSLEEIREATSVPVNEKATQVEE 400 (454)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECSSEEEEEESSCCHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHGGGSCBCTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEEHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCH
T ss_conf 99999999988669868999743303532676808899999999999999986278898899887753880565543002
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000235 1683 -----------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~l~~~~~~~~~~~~~~~~~i~~~Pvlvc~~P~~TVGlGD~ISa~glv~ql~~~~ 454 (454)
T d1ua4a_ 401 KLRAEYGIKEGIGEVEGYQIAFIPTKIVAKPKSTVGIGDTISSSAFIGEFSFTL 454 (454)
T ss_dssp HHHHHHCCBTTEEEETTEEEEEEECBCCSSCSCCTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 210320788762122684799983213588777425864660889999886019
|
| >d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Endo/exocellulase:cellobiose E-4, N-terminal domain species: Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]
Probab=100.00 E-value=0 Score=34307.77 Aligned_cols=1 Identities=0% Similarity=0.204 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
+
T Consensus 1 ~~~Y~~~l~~sl~fy~~QRsG~~p~~~~~~wr~~s~~~Dg~~~~~DvsGGWyDAGDy~Ky~~~~a~s~~~L~~a~~~~~~ 80 (454)
T d1g87a1 1 TYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKD 80 (454)
T ss_dssp CCCHHHHHHHHHHHHHHHBCBSCCTTCSBSSCCCBSTTTTGGGTSCCCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98779999999999887268599854578776556566766578878776422775341055189999999999997366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~s~~~~pdlLdE~kwglDwllkmq~~~g~~y~~vg~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~ 160 (454)
T d1g87a1 81 AYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLAS 160 (454)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTCCSTTCEEEEESCHHHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 43268872899999999999998601689859998158876676767876677777525841789825999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 As~v~~~~d~~yA~~~l~~A~~a~~~a~~~~~~~~~~~~~~~Y~~~~~~De~~wAAaeLy~aTg~~~Y~~~a~~~~~~~~ 240 (454)
T d1g87a1 161 AAVVFKSSDPTYAEKCISHAKNLFDMADKAKSDAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNWG 240 (454)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSCCSCSHHHHHHHHHHHHHHHCCHHHHHHHHHTGGGSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 98876234999999999999999999996589777888886777777414999999999987098999999999998624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~w~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WGsn~~~~~~a~ 320 (454)
T d1g87a1 241 KEQQTDIIAYKWGQCWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVSYTPKGLAWLFQWGSLRHATTQAF 320 (454)
T ss_dssp BCTTSSSBCCSSCCBTTBCHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTCBTTBCCEECTTSCEECCSSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 34467654456767411079999999776331236899999999998651245666758887643657543889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~y~~~a~~qldylLG~Np~S~VtG~G~~~p~~pHHR~s~~~~~~~~~~~~~~~~~~~GalvGG 400 (454)
T d1g87a1 321 LAGVYAEWEGCTPSKVSVYKDFLKSQIDYALGSTGRSFVVGYGVNPPQHPHHRTAHGSWTDQMTSPTYHRHTIYGALVGG 400 (454)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHTTTSSCCBTTSSSSCCSCCBCHHHHTCSSSCTTSSSSCSSCCTTCBCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 99999998632675479999999972243235898642854689888987123113687312468887898871587159
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000235 1683 -----------------------------------------------------T 1683 (1815)
Q Consensus 1683 -----------------------------------------------------~ 1683 (1815)
.
T Consensus 401 Pn~~~~y~D~~~~y~~nEvaid~NA~lv~~la~l~~~~~~~~~~~~~~~~~~~~ 454 (454)
T d1g87a1 401 PDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGGDPIPNFKAIEKITN 454 (454)
T ss_dssp CCTTSCCCCCTTCHHHHBCCHHHHHHHHHHHHHHHHHHCCCCCTTCCBCCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 898999880611154412688856999999999998629997999998889999
|
| >d1ua4a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: Ribokinase-like family: ADP-specific Phosphofructokinase/Glucokinase domain: ADP-dependent glucokinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=34306.51 Aligned_cols=1 Identities=100% Similarity=2.131 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
|
T Consensus 1 ~~w~~~y~~a~~~~~~~~~~~~~v~~gyN~NvDai~~~~~~~l~~ll~~~~~~~v~~~~~~~p~~I~s~~dl~~~~~~~m 80 (454)
T d1ua4a_ 1 PTWEELYKNAIEKAIKSVPKVKGVLLGYNTNIDAIKYLDSKDLEERIIKAGKEEVIKYSEELPDKINTVSQLLGSILWSI 80 (454)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCCCEEEESCCEEEEEEECCHHHHHHHHHHHCHHHHHHHHHSCCSSBCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 96799999999999841314474799974366589966899999999750816444444228702399999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~G~aaE~~v~~~~~~~~~~~~~~~~~r~GGnAgimAn~la~l~~~~Vi~~~p~~sk~qa~~f~~~~i~~P~~~~~~~~l 160 (454)
T d1ua4a_ 81 RRGKAAELFVESCPVRFYMKRWGWNELRMGGQAGIMANLLGGVYGVPVIVHVPQLSRLQANLFLDGPIYVPTLENGEVKL 160 (454)
T ss_dssp HHTCCEEEEBCCHHHHHHHHHHCCSEEEEESHHHHHHHHHTTTTCCCEEECCSCCCHHHHTTSCSSSEEEEEEETTEEEE
T ss_pred HCCCCEEEECCCHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCEEECCCEEE
T ss_conf 47971466427778999998577523731878999999998528961898257752888998337873353354585445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~p~e~~~~e~~~IHlIlEY~~G~~wg~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~dl~vlSGlqmm~~~~ 240 (454)
T d1ua4a_ 161 IHPKEFSGDEENCIHYIYEFPRGFRVFEFEAPRENRFIGSADDYNTTLFIREEFRESFSEVIKNVQLAILSGLQALTKEN 240 (454)
T ss_dssp ECGGGCSCCCCCCEEEEEEECTTCEETTEECSSCEEEEEECCSSGGGTCCCGGGSTTHHHHGGGCSEEEECCGGGCCTTT
T ss_pred CCCHHHCCCCCCCEEEEEEECCCCEECCEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf 48243257997636999980899960366668776689867888755714398999999726698889997610156225
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~l~~~~~~~i~IH~ElAs~~d~~l~~~i~~vlp~vDSlGmNEqEL~~l~~~l~~~~l~~~~~~~~~~~~~ 320 (454)
T d1ua4a_ 241 YKEPFEIVKSNLEVLNEREIPVHLEFAFTPDEKVREEILNVLGMFYSVGLNEVELASIMEILGEKKLAKELLAHDPVDPI 320 (454)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECCCCCCHHHHHHHHHHGGGCSEEEECHHHHHHHHHHTTCHHHHHHTTSSSSCCHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 68899999999974485688568984322179999999985773772888999999999972799755200258962459
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~v~~~l~~l~~~~~L~RIHvHTl~y~~~~t~~~~~~~~~Ala~aa~~A~~~a~~~~~~~~~~~~~~l~~p~~~~~~~~~~ 400 (454)
T d1ua4a_ 321 AVTEAMLKLAKKTGVKRIHFHTYGYYLALTEYKGEHVRDALLFAALAAAAKAMKGNITSLEEIREATSVPVNEKATQVEE 400 (454)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECSSEEEEEESSCCHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHGGGSCBCTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEEHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCH
T ss_conf 99999999988669868999743303532676808899999999999999986278898899887753880565543002
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000235 1717 -----------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~l~~~~~~~~~~~~~~~~~i~~~Pvlvc~~P~~TVGlGD~ISa~glv~ql~~~~ 454 (454)
T d1ua4a_ 401 KLRAEYGIKEGIGEVEGYQIAFIPTKIVAKPKSTVGIGDTISSSAFIGEFSFTL 454 (454)
T ss_dssp HHHHHHCCBTTEEEETTEEEEEEECBCCSSCSCCTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 210320788762122684799983213588777425864660889999886019
|
| >d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Endo/exocellulase:cellobiose E-4, N-terminal domain species: Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]
Probab=100.00 E-value=0 Score=34304.64 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~Y~~~l~~sl~fy~~QRsG~~p~~~~~~wr~~s~~~Dg~~~~~DvsGGWyDAGDy~Ky~~~~a~s~~~L~~a~~~~~~ 80 (454)
T d1g87a1 1 TYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKD 80 (454)
T ss_dssp CCCHHHHHHHHHHHHHHHBCBSCCTTCSBSSCCCBSTTTTGGGTSCCCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98779999999999887268599854578776556566766578878776422775341055189999999999997366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~s~~~~pdlLdE~kwglDwllkmq~~~g~~y~~vg~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~ 160 (454)
T d1g87a1 81 AYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLAS 160 (454)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTCCSTTCEEEEESCHHHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 43268872899999999999998601689859998158876676767876677777525841789825999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 As~v~~~~d~~yA~~~l~~A~~a~~~a~~~~~~~~~~~~~~~Y~~~~~~De~~wAAaeLy~aTg~~~Y~~~a~~~~~~~~ 240 (454)
T d1g87a1 161 AAVVFKSSDPTYAEKCISHAKNLFDMADKAKSDAGYTAASGYYSSSSFYDDLSWAAVWLYLATNDSTYLDKAESYVPNWG 240 (454)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSCCSCSHHHHHHHHHHHHHHHCCHHHHHHHHHTGGGSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 98876234999999999999999999996589777888886777777414999999999987098999999999998624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~w~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WGsn~~~~~~a~ 320 (454)
T d1g87a1 241 KEQQTDIIAYKWGQCWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVNGTRVSYTPKGLAWLFQWGSLRHATTQAF 320 (454)
T ss_dssp BCTTSSSBCCSSCCBTTBCHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTCBTTBCCEECTTSCEECCSSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 34467654456767411079999999776331236899999999998651245666758887643657543889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~y~~~a~~qldylLG~Np~S~VtG~G~~~p~~pHHR~s~~~~~~~~~~~~~~~~~~~GalvGG 400 (454)
T d1g87a1 321 LAGVYAEWEGCTPSKVSVYKDFLKSQIDYALGSTGRSFVVGYGVNPPQHPHHRTAHGSWTDQMTSPTYHRHTIYGALVGG 400 (454)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHTTTSSCCBTTSSSSCCSCCBCHHHHTCSSSCTTSSSSCSSCCTTCBCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 99999998632675479999999972243235898642854689888987123113687312468887898871587159
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------9
Q 000235 1717 -----------------------------------------------------A 1717 (1815)
Q Consensus 1717 -----------------------------------------------------~ 1717 (1815)
-
T Consensus 401 Pn~~~~y~D~~~~y~~nEvaid~NA~lv~~la~l~~~~~~~~~~~~~~~~~~~~ 454 (454)
T d1g87a1 401 PDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGGDPIPNFKAIEKITN 454 (454)
T ss_dssp CCTTSCCCCCTTCHHHHBCCHHHHHHHHHHHHHHHHHHCCCCCTTCCBCCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 898999880611154412688856999999999998629997999998889999
|
| >d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ADC synthase superfamily: ADC synthase family: ADC synthase domain: P-aminobenzoate synthase component I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34238.61 Aligned_cols=1 Identities=0% Similarity=-0.760 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 ~~tl~p~~~~L~~~~~~~~~~f~~l~~~p~s~LLES~~~~~~~gRYSiIg~~P~~~i~~~~~~~~i~~~~~~~~~~~dp~ 80 (453)
T d1k0ga_ 1 MKTLSPAVITLLWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYSRFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPL 80 (453)
T ss_dssp CBCCCCEEEEECCCTTHHHHHHHTTTTSTTCEEEECTTCCSGGGCEEEEECSCSEEEEEETTEEEEEETTEEEEECSCHH
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEECCEEEEEECCCEEECCCCHH
T ss_conf 99788668994267985999999960899709985799999885772898386749999899999995896488579999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~L~~~~~~~~~~~~~~~~lPF~GG~vGy~sYE~~~~~E~lp~~~~~~~~~Pd~~~~~~d~~ivfDh~~~~~~li~~~~~ 160 (453)
T d1k0ga_ 81 QVLQQVLDRADIRPTHNEDLPFQGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV 160 (453)
T ss_dssp HHHHHHHHHHTBCCCCCTTCSCCSEEEEEECGGGGGGTSCCCCCSBCCCCCCSEEEEEESEEEEEETTTTEEEEEESSCH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCC
T ss_conf 99999998647888766789966339999921003111365433444467984212011038996334688999983243
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~V~~~~~~I~~Gdi~qvvls~~~~~~~~~~p~~~y~~Lr~~npsp 240 (453)
T d1k0ga_ 161 NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAP 240 (453)
T ss_dssp HHHHHHHHHCCCCCCCCCEECSCCEESSCHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEEEESCHHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 11456665420485433456776568889899999999999872187676432011465311574577788997642134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~gaSPE~l~~~~~~~~~t~piaGT~~r~~~~~~d~~~~~~L~~s~Ke~~Eh~mvvdl~rndl~~~~~~ 320 (453)
T d1k0ga_ 241 FSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIGRVAVA 320 (453)
T ss_dssp TEEEEECSSCEEEECCCCEEEEEETTEEECSBCC------------------------CCCCCCCCCCTTHHHHHTTSCT
T ss_pred CCCCCCCCCCEEEEEHHHHHHEECCCEEEEEECCCCCCCCCCHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 32101223310553002222000234057775476767665304431001343021577888899999998510233457
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 g~v~v~~~~~~~~~~~v~hl~s~v~~~l~~~~~~~~~l~~l~P~~av~G~Pk~~a~~~I~~~E~~~Rg~Y~G~~G~~~~~ 400 (453)
T d1k0ga_ 321 GSVKVPELFVVEPFPAVHHLVSTITAQLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFC 400 (453)
T ss_dssp TCCBCCCCCC---------CCBSCEEECCTTCCHHHHHHHTCSCGGGTEESHHHHHHHHHHHSSBCCTTTTSEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf 86146344311245566654443310255557799999742888736769779999999985499987514699999479
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1683 ----------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------~ 1683 (1815)
-
T Consensus 401 g~~~~~v~IR~~~~~~~~~~~~aG~GIv~~S~p~~E~~Et~~K~~~~l~al~~ 453 (453)
T d1k0ga_ 401 GNMDTSITIRTLTAINGQIFCSAGGGIVADSQEEAEYQETFDKVNRILKQLEK 453 (453)
T ss_dssp SCEEEECCCSEEEEETTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEEEEEEECCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98899999507999899999996058938978289999999999999999639
|
| >d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Bleomycin hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34238.59 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~l~~~~l~~~~~~f~~~~~n~~a~na~~~~~~~~~~~~~~~~~~~~~~fs~~i~~~~~~vtnQk~SGrCW~Fa~LN~ 80 (453)
T d2cb5a_ 1 SSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNV 80 (453)
T ss_dssp CCSSSCHHHHHHHHHHHHTCHHHHHHHHHHTTSCHHHHHBCHHHHHHCCCCCSEECSCCCSSCCBCCBSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCHHH
T ss_conf 97548999999999998639677999998864699998738797861688506884368875566898844387758699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 lR~~~~k~~~~~~felSq~Yl~f~dklEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p~~DGGqw~m~~nli~KYGvVP 160 (453)
T d2cb5a_ 81 MRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIP 160 (453)
T ss_dssp HHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCB
T ss_pred HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999998199972510689999889999999999999987347885319999986078777764288999999819664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 k~~~pet~~s~~s~~~n~~L~~kLr~~a~~Lr~~~~~~~~~~~l~~~~~~~~~~iy~iL~~~LG~PP~~F~~~y~dk~k~ 240 (453)
T d2cb5a_ 161 KKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKN 240 (453)
T ss_dssp GGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSEEEEEECTTSC
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 86578987874558999999988899999999999738987889999999999999999998199988478996147776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~TP~~F~~~~v~~~~nlddyV~L~~dPr~~~py~k~y~ve~~~Nv~~G~~~~y~Nvp~d~l~~~~~~sL~~g~~ 320 (453)
T d2cb5a_ 241 YEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTVEYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEA 320 (453)
T ss_dssp EEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEETTCCSSTTCCCCCEEECCHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 04568889899999852466680335999866887887774588635565358822279965899999999999966995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 VwfgcDV~k~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv~l~dd~~G~~~~w~VENSWG~~ 400 (453)
T d2cb5a_ 321 VWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGED 400 (453)
T ss_dssp EEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTT
T ss_pred EEEECCCCHHCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf 89972642104520465554450244224677456789999874676787318999876344667987279888660676
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1683 ----------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~g~kGy~~Msd~WF~eyv~eivV~K~~lp~~i~~~l~~~p~~Lp~WDpmGaLA 453 (453)
T d2cb5a_ 401 HGHKGYLCMTDEWFSEYVYEVVVDRKHVPEEVLAVLEQEPIILPAWDPMGALA 453 (453)
T ss_dssp STBTTEEEEEHHHHHHHEEEEEEEGGGSCHHHHGGGGSCCEEECTTCSSCCBC
T ss_pred CCCCCEEEECHHHHHHCCEEEEEEHHHCCHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf 89984699668999750689997745399999998618984798989744569
|
| >d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ADC synthase superfamily: ADC synthase family: ADC synthase domain: P-aminobenzoate synthase component I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34236.32 Aligned_cols=1 Identities=0% Similarity=-0.926 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~tl~p~~~~L~~~~~~~~~~f~~l~~~p~s~LLES~~~~~~~gRYSiIg~~P~~~i~~~~~~~~i~~~~~~~~~~~dp~ 80 (453)
T d1k0ga_ 1 MKTLSPAVITLLWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYSRFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPL 80 (453)
T ss_dssp CBCCCCEEEEECCCTTHHHHHHHTTTTSTTCEEEECTTCCSGGGCEEEEECSCSEEEEEETTEEEEEETTEEEEECSCHH
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCEEEEEECCEEEEEECCCEEECCCCHH
T ss_conf 99788668994267985999999960899709985799999885772898386749999899999995896488579999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~L~~~~~~~~~~~~~~~~lPF~GG~vGy~sYE~~~~~E~lp~~~~~~~~~Pd~~~~~~d~~ivfDh~~~~~~li~~~~~ 160 (453)
T d1k0ga_ 81 QVLQQVLDRADIRPTHNEDLPFQGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV 160 (453)
T ss_dssp HHHHHHHHHHTBCCCCCTTCSCCSEEEEEECGGGGGGTSCCCCCSBCCCCCCSEEEEEESEEEEEETTTTEEEEEESSCH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCC
T ss_conf 99999998647888766789966339999921003111365433444467984212011038996334688999983243
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~V~~~~~~I~~Gdi~qvvls~~~~~~~~~~p~~~y~~Lr~~npsp 240 (453)
T d1k0ga_ 161 NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRFHATYSGDEWQAFLQLNQANRAP 240 (453)
T ss_dssp HHHHHHHHHCCCCCCCCCEECSCCEESSCHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEEEESCHHHHHHHHHHHHCCT
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 11456665420485433456776568889899999999999872187676432011465311574577788997642134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~gaSPE~l~~~~~~~~~t~piaGT~~r~~~~~~d~~~~~~L~~s~Ke~~Eh~mvvdl~rndl~~~~~~ 320 (453)
T d1k0ga_ 241 FSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGTLPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIGRVAVA 320 (453)
T ss_dssp TEEEEECSSCEEEECCCCEEEEEETTEEECSBCC------------------------CCCCCCCCCCTTHHHHHTTSCT
T ss_pred CCCCCCCCCCEEEEEHHHHHHEECCCEEEEEECCCCCCCCCCHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 32101223310553002222000234057775476767665304431001343021577888899999998510233457
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 g~v~v~~~~~~~~~~~v~hl~s~v~~~l~~~~~~~~~l~~l~P~~av~G~Pk~~a~~~I~~~E~~~Rg~Y~G~~G~~~~~ 400 (453)
T d1k0ga_ 321 GSVKVPELFVVEPFPAVHHLVSTITAQLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCGSIGYLSFC 400 (453)
T ss_dssp TCCBCCCCCC---------CCBSCEEECCTTCCHHHHHHHTCSCGGGTEESHHHHHHHHHHHSSBCCTTTTSEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECC
T ss_conf 86146344311245566654443310255557799999742888736769779999999985499987514699999479
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1717 ----------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------~ 1717 (1815)
.
T Consensus 401 g~~~~~v~IR~~~~~~~~~~~~aG~GIv~~S~p~~E~~Et~~K~~~~l~al~~ 453 (453)
T d1k0ga_ 401 GNMDTSITIRTLTAINGQIFCSAGGGIVADSQEEAEYQETFDKVNRILKQLEK 453 (453)
T ss_dssp SCEEEECCCSEEEEETTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEEEEEEECCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98899999507999899999996058938978289999999999999999639
|
| >d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Papain-like domain: Bleomycin hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34235.25 Aligned_cols=1 Identities=100% Similarity=0.936 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~l~~~~l~~~~~~f~~~~~n~~a~na~~~~~~~~~~~~~~~~~~~~~~fs~~i~~~~~~vtnQk~SGrCW~Fa~LN~ 80 (453)
T d2cb5a_ 1 SSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNV 80 (453)
T ss_dssp CCSSSCHHHHHHHHHHHHTCHHHHHHHHHHTTSCHHHHHBCHHHHHHCCCCCSEECSCCCSSCCBCCBSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCHHH
T ss_conf 97548999999999998639677999998864699998738797861688506884368875566898844387758699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 lR~~~~k~~~~~~felSq~Yl~f~dklEKaN~fL~~ii~~~~~~~~~d~R~v~~ll~~p~~DGGqw~m~~nli~KYGvVP 160 (453)
T d2cb5a_ 81 MRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIP 160 (453)
T ss_dssp HHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCB
T ss_pred HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99999998199972510689999889999999999999987347885319999986078777764288999999819664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 k~~~pet~~s~~s~~~n~~L~~kLr~~a~~Lr~~~~~~~~~~~l~~~~~~~~~~iy~iL~~~LG~PP~~F~~~y~dk~k~ 240 (453)
T d2cb5a_ 161 KKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKN 240 (453)
T ss_dssp GGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSEEEEEECTTSC
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 86578987874558999999988899999999999738987889999999999999999998199988478996147776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~TP~~F~~~~v~~~~nlddyV~L~~dPr~~~py~k~y~ve~~~Nv~~G~~~~y~Nvp~d~l~~~~~~sL~~g~~ 320 (453)
T d2cb5a_ 241 YEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTVEYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEA 320 (453)
T ss_dssp EEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEETTCCSSTTCCCCCEEECCHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 04568889899999852466680335999866887887774588635565358822279965899999999999966995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 VwfgcDV~k~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv~l~dd~~G~~~~w~VENSWG~~ 400 (453)
T d2cb5a_ 321 VWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGED 400 (453)
T ss_dssp EEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTT
T ss_pred EEEECCCCHHCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf 89972642104520465554450244224677456789999874676787318999876344667987279888660676
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1717 ----------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~g~kGy~~Msd~WF~eyv~eivV~K~~lp~~i~~~l~~~p~~Lp~WDpmGaLA 453 (453)
T d2cb5a_ 401 HGHKGYLCMTDEWFSEYVYEVVVDRKHVPEEVLAVLEQEPIILPAWDPMGALA 453 (453)
T ss_dssp STBTTEEEEEHHHHHHHEEEEEEEGGGSCHHHHGGGGSCCEEECTTCSSCCBC
T ss_pred CCCCCEEEECHHHHHHCCEEEEEEHHHCCHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf 89984699668999750689997745399999998618984798989744569
|
| >d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Hypothetical protein EF1143 species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=0 Score=34234.84 Aligned_cols=1 Identities=0% Similarity=-0.794 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~k~~~Dpihg~I~~~~~~~~~lidt~~fQRLr~I~Qlg~~~~v~pgA~HtRfeHSLGv~~la~~~~~~ 80 (453)
T d2o6ia1 1 MTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRICEI 80 (453)
T ss_dssp CCCCGGGCEEEEEEEEEETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSSGGGGTSTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHCCCCCCEEECCCCCCEEECHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98882320799885785698663882879999871998673124566378766156898137210999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDiGHgPfSH~~E~~~~~~he~~~~~i~~~~~~~~~~~l~~~~~~~~~~v~ 160 (453)
T d2o6ia1 81 FQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVA 160 (453)
T ss_dssp HHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHSCCCHHHHHHHHHHCTTSHHHHHHHTTCTTHHHHHH
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 98616410023457777899999999998613766110001001343405889999971013588999870566489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~i~~~~~~~~l~~~is~~lD~DrlDYl~RDs~~~Gv~~g~~d~~rli~~~~~~~~~l~~~~k~~~~ie~~~~~R~~my~ 240 (453)
T d2o6ia1 161 SVITKQYPNPQVVQMISSQIDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYV 240 (453)
T ss_dssp HHHTTCSSCHHHHHHHSSSSCHHHHHHHHHHHHHHTCGGGCCCHHHHHHHEEEETTEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCEECCCEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 99717886113445540675611676654113664345576059999975734330657615329999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~VY~H~~~~~~e~ml~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ldD~~~~~~l~~~~~~~d~~l~~L~ 320 (453)
T d2o6ia1 241 QVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGVLSTYFTQWMDVPDSILGDLA 320 (453)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHSSTTSCSCCCCTTTHHHHHTCCCHHHHHTCCHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98607088999999999999999984053012320357788764487889999717619999999997738869999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~r~l~R~l~k~~~~~~~~~~~~~~~~~r~i~e~~G~d~~~~~~i~~~~~i~y~~~~~~~~~~~~~I~Il~kdG~l~~Lse 400 (453)
T d2o6ia1 321 KRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKYYTAINSSYDLPYDFYRPNKDRHRTQIELMQKDGSLVELAT 400 (453)
T ss_dssp HHHHTTCCCEEEECSCTTTTHHHHHHHHHHHHHHTCCHHHHCEEEEC--CCCCCCC------CCSSCEEESSSCEEEHHH
T ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHEEEEECHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEHHH
T ss_conf 98873565500000575026889999999999849790044786013115676567765455675699928995988899
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1683 ----------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------~ 1683 (1815)
.
T Consensus 401 vSpLv~aL~~~~~~~~riy~Pke~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~ 453 (453)
T d2o6ia1 401 VSPLVAALAGQSQGDERFYFPKEMLDQGNKKHYDLFDETYREFSSYIHNGALV 453 (453)
T ss_dssp HCHHHHHHHSCCCCCEEEEECGGGGC---------CCHHHHHHHTTBSSSBBC
T ss_pred HCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 59899985016337689997799978888999999989999999998658839
|
| >d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Hypothetical protein EF1143 species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=0 Score=34231.67 Aligned_cols=1 Identities=0% Similarity=-0.760 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~k~~~Dpihg~I~~~~~~~~~lidt~~fQRLr~I~Qlg~~~~v~pgA~HtRfeHSLGv~~la~~~~~~ 80 (453)
T d2o6ia1 1 MTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRICEI 80 (453)
T ss_dssp CCCCGGGCEEEEEEEEEETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSSGGGGTSTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHCCCCCCEEECCCCCCEEECHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98882320799885785698663882879999871998673124566378766156898137210999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDiGHgPfSH~~E~~~~~~he~~~~~i~~~~~~~~~~~l~~~~~~~~~~v~ 160 (453)
T d2o6ia1 81 FQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVA 160 (453)
T ss_dssp HHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHSCCCHHHHHHHHHHCTTSHHHHHHHTTCTTHHHHHH
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 98616410023457777899999999998613766110001001343405889999971013588999870566489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~i~~~~~~~~l~~~is~~lD~DrlDYl~RDs~~~Gv~~g~~d~~rli~~~~~~~~~l~~~~k~~~~ie~~~~~R~~my~ 240 (453)
T d2o6ia1 161 SVITKQYPNPQVVQMISSQIDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYV 240 (453)
T ss_dssp HHHTTCSSCHHHHHHHSSSSCHHHHHHHHHHHHHHTCGGGCCCHHHHHHHEEEETTEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCEECCCEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 99717886113445540675611676654113664345576059999975734330657615329999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~VY~H~~~~~~e~ml~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ldD~~~~~~l~~~~~~~d~~l~~L~ 320 (453)
T d2o6ia1 241 QVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGVLSTYFTQWMDVPDSILGDLA 320 (453)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHSSTTSCSCCCCTTTHHHHHTCCCHHHHHTCCHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98607088999999999999999984053012320357788764487889999717619999999997738869999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~r~l~R~l~k~~~~~~~~~~~~~~~~~r~i~e~~G~d~~~~~~i~~~~~i~y~~~~~~~~~~~~~I~Il~kdG~l~~Lse 400 (453)
T d2o6ia1 321 KRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKYYTAINSSYDLPYDFYRPNKDRHRTQIELMQKDGSLVELAT 400 (453)
T ss_dssp HHHHTTCCCEEEECSCTTTTHHHHHHHHHHHHHHTCCHHHHCEEEEC--CCCCCCC------CCSSCEEESSSCEEEHHH
T ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHEEEEECHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEHHH
T ss_conf 98873565500000575026889999999999849790044786013115676567765455675699928995988899
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1717 ----------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------~ 1717 (1815)
-
T Consensus 401 vSpLv~aL~~~~~~~~riy~Pke~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~ 453 (453)
T d2o6ia1 401 VSPLVAALAGQSQGDERFYFPKEMLDQGNKKHYDLFDETYREFSSYIHNGALV 453 (453)
T ss_dssp HCHHHHHHHSCCCCCEEEEECGGGGC---------CCHHHHHHHTTBSSSBBC
T ss_pred HCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 59899985016337689997799978888999999989999999998658839
|
| >d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34235.05 Aligned_cols=1 Identities=100% Similarity=0.471 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~r~~~Vk~~F~~aw~~Y~~~a~~~Del~P~s~~~~d~~g~~~tlvDsLdTL~imgl~~ef~~a~~~v~~~~~~~~~~ 80 (453)
T d1x9da1 1 HLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLRKEFEEARKWVSKKLHFEKDV 80 (453)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTSSEEETTTTEEECSSSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 96799999999999999999985778450167879978887525389988889998389799999999998505888787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~v~vFEt~iR~lGgLlsay~ls~d~~lL~kA~~l~d~Ll~aF~t~~giP~~~vn~~~~~~~~~~~~~~~~la~~gsl~LE 160 (453)
T d1x9da1 81 DVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAHPPRWTSDSTVAEVTSIQLE 160 (453)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSTTSCCCSEEETTTCCEECCTTCSEEEHHHHHSSHHH
T ss_pred CCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 56566630787867662401378827999999999998875438999975014646676589888877543334441367
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 f~~LS~lTgd~kY~~~a~r~~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~~~iGa~~DS~YEYLlK~~il~g~~~~~~~ 240 (453)
T d1x9da1 161 FRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQLL 240 (453)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHHTCSCCBTTBCCSEEETTTCCEESTTEECSSTTTHHHHHHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 78999985872999999999999997357888876604515778545788423487741589999999987388418999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~a~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~hLscF~~G~laLg~~~~~~~~~~~~a~~l~~~c~~~y~~~~ 320 (453)
T d1x9da1 241 EDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQME 320 (453)
T ss_dssp HHHHHHHHHHHHHTEEECTTTCCEEECEEETTEEECEEEGGGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999983557898873799851688666540048775267877400047877899999999999999997340
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 tGl~PE~~~~~~~~~~~~~~~~~~~~d~~y~LRPE~iES~fyLyR~TgD~~yr~~gW~if~ai~k~~r~~~~G~a~l~dV 400 (453)
T d1x9da1 321 TGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNV 400 (453)
T ss_dssp TSCCCSEEECCSSCCTTCCSCBCCGGGCCBCCCCHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBCTTSCBCCBSCT
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 44786245305678866665554555456778828999999999860898999999999999999833776873244211
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1683 ----------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~~~~~~~~~D~MeSF~laETLKYlYLlF~~d~~~~~ld~~VfnTEaHpl~i~~ 453 (453)
T d1x9da1 401 QDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPIWT 453 (453)
T ss_dssp TCSSCCCBCSCBCHHHHHTHHHHHHHHHCCC-CCSCTTTEEECTTSCEEECC-
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 26899985785666899999999998508998857667757757886556889
|
| >d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450 bm-3 species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=0 Score=34230.97 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 r~iPGP~~~p~lG~l~~l~~~~~~~~~~~~~~kyG~if~~~~~~~~~vvl~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~ 80 (453)
T d2ij2a1 1 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFA 80 (453)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTTTEEECCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHCHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHC
T ss_conf 97964898535509987089988999999999869989998689019998999999999845785656651768888754
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 g~~~~~~~~~g~~wk~~Rk~l~~~fs~~~l~~~~~~i~~~~~~li~~l~~~~~~~~idl~~~~~~~~~~~i~~~~fG~~~ 160 (453)
T d2ij2a1 81 GDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRF 160 (453)
T ss_dssp TTSGGGSCTTSHHHHHHHHHHGGGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHCCCCCCC
T ss_conf 89578647876999999999998752555322033599999999997640278872026999988765200110002342
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~d~l~~ll~~~~ 240 (453)
T d2ij2a1 161 NSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKD 240 (453)
T ss_dssp CGGGCSSCCHHHHHHHHHHHHHHHTC---CTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHCCC
T ss_pred CHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
T ss_conf 02320231277776553021011222103664311103699999999999999999886421222455302223322011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~ls~~ei~~~~~~~l~ag~~tta~~l~~~l~~L~~~p~~~~~~~~e~~~~~~~~~~~~~~l~~~p~L~a~i~E~l 320 (453)
T d2ij2a1 241 PETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEAL 320 (453)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCSSSCCHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHH
T ss_conf 23676403567876531222222331133311122343000144303455544430145677666513873023333232
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 R~~p~~~~~~r~~~~~~~~~~~~~ip~g~~v~~~~~~~~~d~~~~~~dp~~F~PeRfl~~~~~~~~~~~pFG~G~r~C~G 400 (453)
T d2ij2a1 321 RLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIG 400 (453)
T ss_dssp HHSCSSCEEEEEESSCEEETTTEEECTTCEEEEEHHHHTTCHHHHCSCTTSCCGGGGSSGGGSCTTSCCTTCCGGGSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 00222332332333222247861231022333211000367653399665349554689887898754687898866806
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1683 ----------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~v~~~~R~~~~ 453 (453)
T d2ij2a1 401 QQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPL 453 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEECTTCCCCCEEESSSEEETTCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCC
T ss_conf 99999999999999998479996989866753114871477699999799999
|
| >d2bg1a1 e.3.1.1 (A:337-789) Penicillin-binding protein 1b, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 1b, transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=34232.18 Aligned_cols=1 Identities=0% Similarity=0.271 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~e~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gGl~I~TTiD~~lQ~~ae~~l~~~~~~~~~~ 80 (453)
T d2bg1a1 1 DYLYFTTLAEAQERMYDYLAQRDNVSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDG 80 (453)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCTTTTSCHHHHHHHHHHHHHHHHTSCCEEEECCCHHHHHHHHHHHHHHGGGGCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 96403547899999999997547976888766667889988779999839978994889999999999999877540045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~a~Vv~d~~TG~IlAmvg~~~~~~~~~Nra~~~~r~PGStfKP~v~yaaALe~G~~~~~t~~~~~~~~~~~~~~~ 160 (453)
T d2bg1a1 81 TGRVEVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILSNYPTNFANGNPI 160 (453)
T ss_dssp SSSCEEEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHHHTTSCCTTCEEECSCCBCTTSCBC
T ss_pred CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77604899999899990999997989996544444404457751355899999998679841132246663101257763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~G~vtl~~Al~~S~Nv~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~sl~~Gg~~~vTplqma~ayatiAN 240 (453)
T d2bg1a1 161 MYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGYMEKMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLAN 240 (453)
T ss_dssp CBTTBCCCCEEEHHHHHHHTCSHHHHHHHHHHHHTTCCHHHHHHHTTCCCSCCCCTTGGGTTTCCBCHHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCC
T ss_conf 34578788687779978764034999999986433166776653013467544532212223102100111213222026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~G~~~~P~~i~~i~d~~G~vi~~~~~~~~~vis~~ta~~~~~~L~~VV~~Gtg~~~~~~~~~~~~~~~~~~vAGKTGTt~ 320 (453)
T d2bg1a1 241 NGVYHQKHVISKIEAADGRVVYEYQDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTN 320 (453)
T ss_dssp TTEECCCBSEEEEECTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHCHHHHTSCCEEEEECCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98142550111135643232200022222357888999876545653045543101035544455557876202432788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~DaWFvGytp~~~~~VwvG~d~~~~~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~f~~p~~vv~~~v~~~tG~lp 400 (453)
T d2bg1a1 321 QDENMWLMLSTPRLTLGGWIGHDDNHSLSQQAGYSNNSNYMAHLVNAIQQASPSIWGNERFALDPSVVKSEVLKSTGQKP 400 (453)
T ss_dssp TCSEEEEEEECSSEEEEEEEECTTCCCCCTTTTTTHHHHHHHHHHHHHHHHSTTSSCSCCCCCCTTCEEEEEETTTSSBC
T ss_pred CCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 87045899627985799999789998675764654169999999999987471447867789999848999872227778
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1683 ----------------------------------------------------T 1683 (1815)
Q Consensus 1683 ----------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~ 453 (453)
T d2bg1a1 401 GKVSVEGKEVEVTGSTVTSYWANKSGAPATSYRFAIGGSDADYQNAWSSIVGS 453 (453)
T ss_dssp EEEECSSSEEEECCCEEEEEESSSSCSCBCCSSCSBSCCHHHHHHHHHHHHC-
T ss_pred CCCCCCCCEECCCCCCCCCHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 88899870522689832205206899996234236788857899998864389
|
| >d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Seven-hairpin glycosidases family: Class I alpha-1;2-mannosidase, catalytic domain domain: Class I alpha-1;2-mannosidase, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34231.96 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~r~~~Vk~~F~~aw~~Y~~~a~~~Del~P~s~~~~d~~g~~~tlvDsLdTL~imgl~~ef~~a~~~v~~~~~~~~~~ 80 (453)
T d1x9da1 1 HLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILGLRKEFEEARKWVSKKLHFEKDV 80 (453)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCTTSSEEETTTTEEECSSSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 96799999999999999999985778450167879978887525389988889998389799999999998505888787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~v~vFEt~iR~lGgLlsay~ls~d~~lL~kA~~l~d~Ll~aF~t~~giP~~~vn~~~~~~~~~~~~~~~~la~~gsl~LE 160 (453)
T d1x9da1 81 DVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAHPPRWTSDSTVAEVTSIQLE 160 (453)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSTTSCCCSEEETTTCCEECCTTCSEEEHHHHHSSHHH
T ss_pred CCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 56566630787867662401378827999999999998875438999975014646676589888877543334441367
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 f~~LS~lTgd~kY~~~a~r~~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~~~iGa~~DS~YEYLlK~~il~g~~~~~~~ 240 (453)
T d1x9da1 161 FRELSRLTGDKKFQEAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQETQLL 240 (453)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHHTCSCCBTTBCCSEEETTTCCEESTTEECSSTTTHHHHHHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 78999985872999999999999997357888876604515778545788423487741589999999987388418999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~a~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~hLscF~~G~laLg~~~~~~~~~~~~a~~l~~~c~~~y~~~~ 320 (453)
T d1x9da1 241 EDYVEAIEGVRTHLLRHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQME 320 (453)
T ss_dssp HHHHHHHHHHHHHTEEECTTTCCEEECEEETTEEECEEEGGGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999983557898873799851688666540048775267877400047877899999999999999997340
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 tGl~PE~~~~~~~~~~~~~~~~~~~~d~~y~LRPE~iES~fyLyR~TgD~~yr~~gW~if~ai~k~~r~~~~G~a~l~dV 400 (453)
T d1x9da1 321 TGLSPEIVHFNLYPQPGRRDVEVKPADRHNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNV 400 (453)
T ss_dssp TSCCCSEEECCSSCCTTCCSCBCCGGGCCBCCCCHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBCTTSCBCCBSCT
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 44786245305678866665554555456778828999999999860898999999999999999833776873244211
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1717 ----------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~~~~~~~~D~MeSF~laETLKYlYLlF~~d~~~~~ld~~VfnTEaHpl~i~~ 453 (453)
T d1x9da1 401 QDPQKPEPRDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPIWT 453 (453)
T ss_dssp TCSSCCCBCSCBCHHHHHTHHHHHHHHHCCC-CCSCTTTEEECTTSCEEECC-
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 26899985785666899999999998508998857667757757886556889
|
| >d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450 bm-3 species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=0 Score=34227.51 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 r~iPGP~~~p~lG~l~~l~~~~~~~~~~~~~~kyG~if~~~~~~~~~vvl~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~ 80 (453)
T d2ij2a1 1 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFA 80 (453)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTTTEEECCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHCHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHC
T ss_conf 97964898535509987089988999999999869989998689019998999999999845785656651768888754
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 g~~~~~~~~~g~~wk~~Rk~l~~~fs~~~l~~~~~~i~~~~~~li~~l~~~~~~~~idl~~~~~~~~~~~i~~~~fG~~~ 160 (453)
T d2ij2a1 81 GDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRF 160 (453)
T ss_dssp TTSGGGSCTTSHHHHHHHHHHGGGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHCCCCCCC
T ss_conf 89578647876999999999998752555322033599999999997640278872026999988765200110002342
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~d~l~~ll~~~~ 240 (453)
T d2ij2a1 161 NSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLTHMLNGKD 240 (453)
T ss_dssp CGGGCSSCCHHHHHHHHHHHHHHHTC---CTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHCCC
T ss_pred CHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
T ss_conf 02320231277776553021011222103664311103699999999999999999886421222455302223322011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~ls~~ei~~~~~~~l~ag~~tta~~l~~~l~~L~~~p~~~~~~~~e~~~~~~~~~~~~~~l~~~p~L~a~i~E~l 320 (453)
T d2ij2a1 241 PETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEAL 320 (453)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCSSSCCHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHH
T ss_conf 23676403567876531222222331133311122343000144303455544430145677666513873023333232
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 R~~p~~~~~~r~~~~~~~~~~~~~ip~g~~v~~~~~~~~~d~~~~~~dp~~F~PeRfl~~~~~~~~~~~pFG~G~r~C~G 400 (453)
T d2ij2a1 321 RLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIG 400 (453)
T ss_dssp HHSCSSCEEEEEESSCEEETTTEEECTTCEEEEEHHHHTTCHHHHCSCTTSCCGGGGSSGGGSCTTSCCTTCCGGGSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 00222332332333222247861231022333211000367653399665349554689887898754687898866806
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1717 ----------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~v~~~~R~~~~ 453 (453)
T d2ij2a1 401 QQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPL 453 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEECTTCCCCCEEESSSEEETTCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCC
T ss_conf 99999999999999998479996989866753114871477699999799999
|
| >d2bg1a1 e.3.1.1 (A:337-789) Penicillin-binding protein 1b, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 1b, transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=34228.98 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~e~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gGl~I~TTiD~~lQ~~ae~~l~~~~~~~~~~ 80 (453)
T d2bg1a1 1 DYLYFTTLAEAQERMYDYLAQRDNVSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAMQSAVADYGYLLDDG 80 (453)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCTTTTSCHHHHHHHHHHHHHHHHTSCCEEEECCCHHHHHHHHHHHHHHGGGGCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 96403547899999999997547976888766667889988779999839978994889999999999999877540045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~a~Vv~d~~TG~IlAmvg~~~~~~~~~Nra~~~~r~PGStfKP~v~yaaALe~G~~~~~t~~~~~~~~~~~~~~~ 160 (453)
T d2bg1a1 81 TGRVEVGNVLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILSNYPTNFANGNPI 160 (453)
T ss_dssp SSSCEEEEEEEETTTCBEEEEECCSCTTTCCCCTTTTCCBCCGGGGHHHHTHHHHHHTTSCCTTCEEECSCCBCTTSCBC
T ss_pred CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 77604899999899990999997989996544444404457751355899999998679841132246663101257763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~G~vtl~~Al~~S~Nv~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~sl~~Gg~~~vTplqma~ayatiAN 240 (453)
T d2bg1a1 161 MYANSKGTGMMTLGEALNYSWNIPAYWTYRMLRENGVDVKGYMEKMGYEIPEYGIESLPMGGGIEVTVAQHTNGYQTLAN 240 (453)
T ss_dssp CBTTBCCCCEEEHHHHHHHTCSHHHHHHHHHHHHTTCCHHHHHHHTTCCCSCCCCTTGGGTTTCCBCHHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCC
T ss_conf 34578788687779978764034999999986433166776653013467544532212223102100111213222026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~G~~~~P~~i~~i~d~~G~vi~~~~~~~~~vis~~ta~~~~~~L~~VV~~Gtg~~~~~~~~~~~~~~~~~~vAGKTGTt~ 320 (453)
T d2bg1a1 241 NGVYHQKHVISKIEAADGRVVYEYQDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKTGTTN 320 (453)
T ss_dssp TTEECCCBSEEEEECTTSCEEEECCCCCEECSCHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHCHHHHTSCCEEEEECCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98142550111135643232200022222357888999876545653045543101035544455557876202432788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~DaWFvGytp~~~~~VwvG~d~~~~~~~~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~f~~p~~vv~~~v~~~tG~lp 400 (453)
T d2bg1a1 321 QDENMWLMLSTPRLTLGGWIGHDDNHSLSQQAGYSNNSNYMAHLVNAIQQASPSIWGNERFALDPSVVKSEVLKSTGQKP 400 (453)
T ss_dssp TCSEEEEEEECSSEEEEEEEECTTCCCCCTTTTTTHHHHHHHHHHHHHHHHSTTSSCSCCCCCCTTCEEEEEETTTSSBC
T ss_pred CCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 87045899627985799999789998675764654169999999999987471447867789999848999872227778
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------9
Q 000235 1717 ----------------------------------------------------A 1717 (1815)
Q Consensus 1717 ----------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~ 453 (453)
T d2bg1a1 401 GKVSVEGKEVEVTGSTVTSYWANKSGAPATSYRFAIGGSDADYQNAWSSIVGS 453 (453)
T ss_dssp EEEECSSSEEEECCCEEEEEESSSSCSCBCCSSCSBSCCHHHHHHHHHHHHC-
T ss_pred CCCCCCCCEECCCCCCCCCHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 88899870522689832205206899996234236788857899998864389
|
| >d1lsha3 f.7.1.1 (A:621-1073) Lipovitellin-phosvitin complex; beta-sheet shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Lipovitellin-phosvitin complex; beta-sheet shell regions superfamily: Lipovitellin-phosvitin complex; beta-sheet shell regions family: Lipovitellin-phosvitin complex; beta-sheet shell regions domain: Lipovitellin-phosvitin complex; beta-sheet shell regions species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=100.00 E-value=0 Score=34160.05 Aligned_cols=1 Identities=0% Similarity=-1.391 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~rYSk~~~~~~~~~~~~~Ga~~~~~~I~s~~S~lPrsv~~~l~~~~~G~~~n~lEvG~r~EGle~ll~~~~~~~~~~~~~ 80 (452)
T d1lsha3 1 CRYSKAVHVDTFNARTMAGVSADYFRINSPSGPLPRAVAAKIRGQGMGYASDIVEFGLRAEGLQELLYRGSQEQDAYGTA 80 (452)
T ss_dssp TTSCEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEECHHHHHHHC------------
T ss_pred CCCCCCEECHHCCCHHCCEEEEEEEEEECCCCCCCHHHHEEEEEEECCCCCCEEEEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 98775023100170005533799999957998527451212570016801553999999608899998741754433320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~s~ylk~fG~Ei~f~~~d~~~ie~~~~~~~~~~~~~~~~~~~ 160 (452)
T d1lsha3 81 LDRQTLLRSGQARSHVSSIHDTLRKLSDWKSVPEERPLASGYVKVHGQEVVFAELDKKMMQRISQLWHSARSHHAAAQEQ 160 (452)
T ss_dssp ---------------------------CCCCCCCCCCSEEEEEEETTEEEEEEEESTTC------------------CHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCEEEEEEECHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 24454411345553067899999986222447546803899966458656899807889999998763034301245778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 l~~~~~~L~~G~~~~~tk~~~~~e~~~~~PT~~GlPl~lsl~~~av~~~~~~~k~~v~p~~~~~~~~~ll~~~i~~~~~i 240 (452)
T d1lsha3 161 IGAVVSKLEQGMDVLLTKGYVVSEVRYMQPVCIGIPMDLNLLVSGVTTNRANLSASFSSLPADMKLADLLATNIELRVAA 240 (452)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEECSSCCTTCCHHHHTTSCEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEECCCCCCCCEEEEEECEEEEEEEEEEEEECCCCCCCCCHHHCCCCCEEEEEEE
T ss_conf 99999987537616775401301101624445665259886120699998888750047743343112255525999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~PS~s~~~~~~mGv~t~f~qagv~~~~k~~~~~p~~~~a~id~~~~~~k~~i~P~~~~~~i~~~~~~~~~~~~~~~~~k~ 320 (452)
T d1lsha3 241 TTSMSQHAVAIMGLTTDLAKAGMQTHYKTSAGLGVNGKIEMNARESNFKASLKPFQQKTVVVLSTMESIVFVRDPSGSRI 320 (452)
T ss_dssp EEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEECCCCSCEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCC
T ss_conf 99999999999999603306799998888885442599999514787999970788870579999877999833540014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 tp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~G 400 (452)
T d1lsha3 321 LPVLPPKMTLDKGLISQQQQQPHHQQQPHQHGQDQARAAYQRPWASHEFSPAEQKQIHDIMTARPVMRRKQSCSKSAALS 400 (452)
T ss_dssp EESSCSSCC--------------------------------------------CHHHHHHSCSSCCCEEEEECCEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 56666434454100122233322123433224432210003445443125443211111122334430000100323014
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1683 ---------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~C~~~~~~na~~~~~~ply~l~G~~~~~~~v~P~~~~~~ieki~~evq~g 452 (452)
T d1lsha3 401 SKVCFSARLRNAAFIRNALLYKITGDYVSKVYVQPTSSKAQITKVELELQAG 452 (452)
T ss_dssp EEEEEEEEEEESTTTCSCHHHHTSEEEEEEEEEECCSSCCCCEEEEEECSCC
T ss_pred EEEEEEEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCEEEEEEEECC
T ss_conf 4889999816610024775611036479999998878997615899999559
|
| >d1lsha3 f.7.1.1 (A:621-1073) Lipovitellin-phosvitin complex; beta-sheet shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Lipovitellin-phosvitin complex; beta-sheet shell regions superfamily: Lipovitellin-phosvitin complex; beta-sheet shell regions family: Lipovitellin-phosvitin complex; beta-sheet shell regions domain: Lipovitellin-phosvitin complex; beta-sheet shell regions species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=100.00 E-value=0 Score=34157.02 Aligned_cols=1 Identities=0% Similarity=-0.860 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~rYSk~~~~~~~~~~~~~Ga~~~~~~I~s~~S~lPrsv~~~l~~~~~G~~~n~lEvG~r~EGle~ll~~~~~~~~~~~~~ 80 (452)
T d1lsha3 1 CRYSKAVHVDTFNARTMAGVSADYFRINSPSGPLPRAVAAKIRGQGMGYASDIVEFGLRAEGLQELLYRGSQEQDAYGTA 80 (452)
T ss_dssp TTSCEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEECHHHHHHHC------------
T ss_pred CCCCCCEECHHCCCHHCCEEEEEEEEEECCCCCCCHHHHEEEEEEECCCCCCEEEEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 98775023100170005533799999957998527451212570016801553999999608899998741754433320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~s~ylk~fG~Ei~f~~~d~~~ie~~~~~~~~~~~~~~~~~~~ 160 (452)
T d1lsha3 81 LDRQTLLRSGQARSHVSSIHDTLRKLSDWKSVPEERPLASGYVKVHGQEVVFAELDKKMMQRISQLWHSARSHHAAAQEQ 160 (452)
T ss_dssp ---------------------------CCCCCCCCCCSEEEEEEETTEEEEEEEESTTC------------------CHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCEEEEEEECHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 24454411345553067899999986222447546803899966458656899807889999998763034301245778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 l~~~~~~L~~G~~~~~tk~~~~~e~~~~~PT~~GlPl~lsl~~~av~~~~~~~k~~v~p~~~~~~~~~ll~~~i~~~~~i 240 (452)
T d1lsha3 161 IGAVVSKLEQGMDVLLTKGYVVSEVRYMQPVCIGIPMDLNLLVSGVTTNRANLSASFSSLPADMKLADLLATNIELRVAA 240 (452)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEECSSCCTTCCHHHHTTSCEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEECCCCCCCCEEEEEECEEEEEEEEEEEEECCCCCCCCCHHHCCCCCEEEEEEE
T ss_conf 99999987537616775401301101624445665259886120699998888750047743343112255525999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~PS~s~~~~~~mGv~t~f~qagv~~~~k~~~~~p~~~~a~id~~~~~~k~~i~P~~~~~~i~~~~~~~~~~~~~~~~~k~ 320 (452)
T d1lsha3 241 TTSMSQHAVAIMGLTTDLAKAGMQTHYKTSAGLGVNGKIEMNARESNFKASLKPFQQKTVVVLSTMESIVFVRDPSGSRI 320 (452)
T ss_dssp EEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEECCCCSCEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCC
T ss_conf 99999999999999603306799998888885442599999514787999970788870579999877999833540014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 tp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~G 400 (452)
T d1lsha3 321 LPVLPPKMTLDKGLISQQQQQPHHQQQPHQHGQDQARAAYQRPWASHEFSPAEQKQIHDIMTARPVMRRKQSCSKSAALS 400 (452)
T ss_dssp EESSCSSCC--------------------------------------------CHHHHHHSCSSCCCEEEEECCEETTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 56666434454100122233322123433224432210003445443125443211111122334430000100323014
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1717 ---------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------~ 1717 (1815)
.
T Consensus 401 ~~~C~~~~~~na~~~~~~ply~l~G~~~~~~~v~P~~~~~~ieki~~evq~g 452 (452)
T d1lsha3 401 SKVCFSARLRNAAFIRNALLYKITGDYVSKVYVQPTSSKAQITKVELELQAG 452 (452)
T ss_dssp EEEEEEEEEEESTTTCSCHHHHTSEEEEEEEEEECCSSCCCCEEEEEECSCC
T ss_pred EEEEEEEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCEEEEEEEECC
T ss_conf 4889999816610024775611036479999998878997615899999559
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34153.70 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~v~~lPg~~~~~~~~~ysGyl~~~~~~~lffw~~~s~~~~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~ 80 (452)
T d1ivya_ 1 APDQDEIQRLPGLAKQPSFRQYSGYLKSSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGV 80 (452)
T ss_dssp CCTTTBCSSCTTCSSCCSSCEEEEEEECSTTEEEEEEEECCSSCGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEECCCCC
T ss_conf 99558101596868998963202564059996599999973799887988999889895898988987168927748997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~N~~SW~~~anllfIDqPvGtGfS~~~~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia 160 (452)
T d1ivya_ 81 TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA 160 (452)
T ss_dssp CEEECTTCGGGSSEEEEECCSTTSTTCEESSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHH
T ss_pred EECCCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 20107863202267799953787553567887777781999999999999999966664289627863121010118999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~i~~~~~i~l~Gi~igng~~d~~~~~~~~~~~~~~~gli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (452)
T d1ivya_ 161 VLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVG 240 (452)
T ss_dssp HHHTTCTTSCEEEEEEESCCSBHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHEETTEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCEECCCCCCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99973674011434727886672204256899988646456167899999986554432102457999999999999851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yln~~~V~~ 320 (452)
T d1ivya_ 241 NSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRK 320 (452)
T ss_dssp SSSCCTTCTTSCCTTCCSSSEEEETTEEEECCCSCSSTTSCCCCCCGGGHHHHTCEEEECCTTCCCHHHHHHHTSHHHHH
T ss_pred CCCCCHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHH
T ss_conf 47878554126423687411001102224554332210364111120001366765457898766168998854888998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 aL~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~~~rVliy~Gd~D~~~~~~gte~~i~~l~~~~~~~~~~~~~ 400 (452)
T d1ivya_ 321 ALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLV 400 (452)
T ss_dssp HTTCCTTSCCCCSBCHHHHHHCBCCCSBSHHHHHHHHHHTCCEEEEEEETTCSSSCHHHHHHHHHHTCCCEEEEEEEEEE
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCEECCCHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 62898766546446610123430343331179999987479879999699465188789999998568744456555120
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1683 ---------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------~ 1683 (1815)
=
T Consensus 401 ~~~~~~~~v~G~v~~~~nltf~~V~~AGHmVP~dqP~~a~~m~~~fi~g~pf 452 (452)
T d1ivya_ 401 KYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQPY 452 (452)
T ss_dssp ECTTSCEEEEEEEEEESSEEEEEETTCCSSHHHHCHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 2457898888999998985999989930668002999999999999749999
|
| >d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Integrin alpha N-terminal domain family: Integrin alpha N-terminal domain domain: Integrin alpha N-terminal domain species: Human (Homo sapiens), isoform IIb [TaxId: 9606]
Probab=100.00 E-value=0 Score=34153.38 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
=
T Consensus 1 fNld~~~~~~~~g~~gs~FG~SVa~~~~~~~~~~liVGAP~~~~~~~~~~GavY~c~~~~~~~~c~~~~~d~~~~~~~~~ 80 (452)
T d1tyea_ 1 LNLDPVQLTFYAGPNGSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAEGGQCPSLLFDLRDETRNVG 80 (452)
T ss_dssp CCBCSSSCEEEECCTTSCTTSEEEEECCSSSCCEEEEEETTCBCTTSSBCBEEEEEECCTTEECCCEECCCCSCEEEEET
T ss_pred CCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 96388773366699998752178878868997089995987678998737579980234789960599864689734346
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~G~sv~~~g~~~vv~Ap~~~~~~~~~~~~~~~~~~G~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (452)
T d1tyea_ 81 SQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEEAEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDF 160 (452)
T ss_dssp TEEEEEECTTCCBTSEEEEETTEEEEEETTCEEEEEETTEECCCEECBEEEEEETTTTEEEEECTTCCCCCHHHHHHHTS
T ss_pred CCCCCCCCCCCEEEEEEEECCCCEEEEECCEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 54566545784468999953994179701235022235655542200588996147764135623257876421125676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~g~s~~~~~~~~~~~ga~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~sva 240 (452)
T d1tyea_ 161 SWDKRYCEAGFSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA 240 (452)
T ss_dssp TTCCTTCCBTSEEEECTTSEEEEEETTHHHHTCEEEEEEHHHHHHHCCTTCCSCCCTTCEECCCCCCGGGTTCCTTSEEE
T ss_pred CCCCCCCCCCEEEEECCCCCEEECCCCCEECCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 43334344745655236730761475411225607850346655444552355046772001234676545773312799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~g~~~~~~~~~~~v~g~~~~~~~~G~v~i~~~~~~~~~~~~~~~~g~~fg~sv~~~D~ngDG~~Dl~Vga~~~~~~~~~~ 320 (452)
T d1tyea_ 241 VGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRAEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADR 320 (452)
T ss_dssp EECCSSCTTSCEEEEEETTHHHHTCEEEEECTTCCEEEEEECSSTTSCTTSEEEEECTTSSSSCEEEEECTTCEEEETTT
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCC
T ss_conf 86036888741599666545675788999944783577713411477324579886047888764899605655666767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~G~v~v~~~~~~~~~~~~~~~~~~g~~~~~~fG~~~~~~gD~n~DG~~Dl~Vgap~~~~~~~G~vyi~~~~~~g~~ 400 (452)
T d1tyea_ 321 KLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLR 400 (452)
T ss_dssp EEEECBEEEEECCCSSSCCCCSCSEEEECCSTTCCBTSEEEECCCSSCSSSCCEEEEETTCSSSSSCEEEEECBCSSSBC
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCC
T ss_conf 66428869999357774202566256317665677662578987437999812999836789998865999980799846
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1683 ---------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~~~~~~~~~~~~~~~~fG~s~~~~~D~d~DG~~DlvVGa~~~~~~~l~r~~p 452 (452)
T d1tyea_ 401 SRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQP 452 (452)
T ss_dssp SSCSEEEECCSCTTCCTTSEEEEEECSSCSSSCEEEEEEGGGTEEEEECBCC
T ss_pred CCCEEEECCCCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 5423553168766675045765504557999862899726998099995889
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34152.11 Aligned_cols=1 Identities=0% Similarity=-0.626 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~v~~lPg~~~~~~~~~ysGyl~~~~~~~lffw~~~s~~~~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~ 80 (452)
T d1ivya_ 1 APDQDEIQRLPGLAKQPSFRQYSGYLKSSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGV 80 (452)
T ss_dssp CCTTTBCSSCTTCSSCCSSCEEEEEEECSTTEEEEEEEECCSSCGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEECCCCC
T ss_conf 99558101596868998963202564059996599999973799887988999889895898988987168927748997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~N~~SW~~~anllfIDqPvGtGfS~~~~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia 160 (452)
T d1ivya_ 81 TLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLA 160 (452)
T ss_dssp CEEECTTCGGGSSEEEEECCSTTSTTCEESSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHH
T ss_pred EECCCCCCHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 20107863202267799953787553567887777781999999999999999966664289627863121010118999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~i~~~~~i~l~Gi~igng~~d~~~~~~~~~~~~~~~gli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (452)
T d1ivya_ 161 VLVMQDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECVTNLQEVARIVG 240 (452)
T ss_dssp HHHTTCTTSCEEEEEEESCCSBHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHEETTEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCEECCCCCCCCHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99973674011434727886672204256899988646456167899999986554432102457999999999999851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yln~~~V~~ 320 (452)
T d1ivya_ 241 NSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRK 320 (452)
T ss_dssp SSSCCTTCTTSCCTTCCSSSEEEETTEEEECCCSCSSTTSCCCCCCGGGHHHHTCEEEECCTTCCCHHHHHHHTSHHHHH
T ss_pred CCCCCHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHH
T ss_conf 47878554126423687411001102224554332210364111120001366765457898766168998854888998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 aL~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~~~rVliy~Gd~D~~~~~~gte~~i~~l~~~~~~~~~~~~~ 400 (452)
T d1ivya_ 321 ALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLV 400 (452)
T ss_dssp HTTCCTTSCCCCSBCHHHHHHCBCCCSBSHHHHHHHHHHTCCEEEEEEETTCSSSCHHHHHHHHHHTCCCEEEEEEEEEE
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCEECCCHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 62898766546446610123430343331179999987479879999699465188789999998568744456555120
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1717 ---------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~~~~~~~v~G~v~~~~nltf~~V~~AGHmVP~dqP~~a~~m~~~fi~g~pf 452 (452)
T d1ivya_ 401 KYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQPY 452 (452)
T ss_dssp ECTTSCEEEEEEEEEESSEEEEEETTCCSSHHHHCHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 2457898888999998985999989930668002999999999999749999
|
| >d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Integrin alpha N-terminal domain family: Integrin alpha N-terminal domain domain: Integrin alpha N-terminal domain species: Human (Homo sapiens), isoform IIb [TaxId: 9606]
Probab=100.00 E-value=0 Score=34150.54 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 fNld~~~~~~~~g~~gs~FG~SVa~~~~~~~~~~liVGAP~~~~~~~~~~GavY~c~~~~~~~~c~~~~~d~~~~~~~~~ 80 (452)
T d1tyea_ 1 LNLDPVQLTFYAGPNGSQFGFSLDFHKDSHGRVAIVVGAPRTLGPSQEETGGVFLCPWRAEGGQCPSLLFDLRDETRNVG 80 (452)
T ss_dssp CCBCSSSCEEEECCTTSCTTSEEEEECCSSSCCEEEEEETTCBCTTSSBCBEEEEEECCTTEECCCEECCCCSCEEEEET
T ss_pred CCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 96388773366699998752178878868997089995987678998737579980234789960599864689734346
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~G~sv~~~g~~~vv~Ap~~~~~~~~~~~~~~~~~~G~cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (452)
T d1tyea_ 81 SQTLQTFKARQGLGASVVSWSDVIVACAPWQHWNVLEKTEEAEKTPVGSCFLAQPESGRRAEYSPCRGNTLSRIYVENDF 160 (452)
T ss_dssp TEEEEEECTTCCBTSEEEEETTEEEEEETTCEEEEEETTEECCCEECBEEEEEETTTTEEEEECTTCCCCCHHHHHHHTS
T ss_pred CCCCCCCCCCCEEEEEEEECCCCEEEEECCEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 54566545784468999953994179701235022235655542200588996147764135623257876421125676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~g~s~~~~~~~~~~~ga~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~sva 240 (452)
T d1tyea_ 161 SWDKRYCEAGFSSVVTQAGELVLGAPGGYYFLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVA 240 (452)
T ss_dssp TTCCTTCCBTSEEEECTTSEEEEEETTHHHHTCEEEEEEHHHHHHHCCTTCCSCCCTTCEECCCCCCGGGTTCCTTSEEE
T ss_pred CCCCCCCCCCEEEEECCCCCEEECCCCCEECCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 43334344745655236730761475411225607850346655444552355046772001234676545773312799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~g~~~~~~~~~~~v~g~~~~~~~~G~v~i~~~~~~~~~~~~~~~~g~~fg~sv~~~D~ngDG~~Dl~Vga~~~~~~~~~~ 320 (452)
T d1tyea_ 241 VGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRLHRLRAEQMASYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADR 320 (452)
T ss_dssp EECCSSCTTSCEEEEEETTHHHHTCEEEEECTTCCEEEEEECSSTTSCTTSEEEEECTTSSSSCEEEEECTTCEEEETTT
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCC
T ss_conf 86036888741599666545675788999944783577713411477324579886047888764899605655666767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~G~v~v~~~~~~~~~~~~~~~~~~g~~~~~~fG~~~~~~gD~n~DG~~Dl~Vgap~~~~~~~G~vyi~~~~~~g~~ 400 (452)
T d1tyea_ 321 KLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLR 400 (452)
T ss_dssp EEEECBEEEEECCCSSSCCCCSCSEEEECCSTTCCBTSEEEECCCSSCSSSCCEEEEETTCSSSSSCEEEEECBCSSSBC
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCC
T ss_conf 66428869999357774202566256317665677662578987437999812999836789998865999980799846
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1717 ---------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~~~~~~~~~~~~~~~fG~s~~~~~D~d~DG~~DlvVGa~~~~~~~l~r~~p 452 (452)
T d1tyea_ 401 SRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQP 452 (452)
T ss_dssp SSCSEEEECCSCTTCCTTSEEEEEECSSCSSSCEEEEEEGGGTEEEEECBCC
T ss_pred CCCEEEECCCCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 5423553168766675045765504557999862899726998099995889
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=34158.36 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~ 80 (452)
T d1ilea3 1 MFKEVGEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPR 80 (452)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEC
T ss_conf 97644688989999999999987798457700058999789963898888960142679899999999999807994543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~ 160 (452)
T d1ilea3 81 RAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWW 160 (452)
T ss_dssp EEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHH
T ss_conf 68768778899999987402444550367779999998766776654667777764101334310112177589999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~~~~p~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 240 (452)
T d1ilea3 161 SLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHI 240 (452)
T ss_dssp HHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGG
T ss_pred HHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCHHHHHHHHCCCCCCCCHH
T ss_conf 99999856973223222101012322322233425589866767762886421334442000356666530355676333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~l~dw~IsR~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (452)
T d1ilea3 241 KEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 320 (452)
T ss_dssp TTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEE
T ss_pred HHCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32034220357766200102211357763212456753555316666654236667566643333321001333432002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~v~~~w~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~d~~~~~fh~l~~~~~l~~~~~~~~~v~~hg~iL~~~G 400 (452)
T d1ilea3 321 RVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG 400 (452)
T ss_dssp ECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCCCCCCHHHEECCCEECHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC
T ss_conf 45532145465554201102675210010035784242110676520133898986898739988875788667999998
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1683 ---------------------------------------------------T 1683 (1815)
Q Consensus 1683 ---------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~~~~~~~d~~Fs~~~~~e~~~~ 452 (452)
T d1ilea3 401 QKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRD 452 (452)
T ss_dssp SCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
T ss_conf 2447889988698999988292899999994399877877699998677549
|
| >d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Isoleucyl-tRNA synthetase (IleRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=34154.80 Aligned_cols=1 Identities=0% Similarity=-0.893 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~ 80 (452)
T d1ilea3 1 MFKEVGEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPR 80 (452)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEC
T ss_conf 97644688989999999999987798457700058999789963898888960142679899999999999807994543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 v~G~D~hG~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~ 160 (452)
T d1ilea3 81 RAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWW 160 (452)
T ss_dssp EEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHH
T ss_conf 68768778899999987402444550367779999998766776654667777764101334310112177589999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~f~~l~~~G~iy~~~~~~~~~~~~~~~~~~~~~~~~~p~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 240 (452)
T d1ilea3 161 SLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHI 240 (452)
T ss_dssp HHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGG
T ss_pred HHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCHHHHHHHHCCCCCCCCHH
T ss_conf 99999856973223222101012322322233425589866767762886421334442000356666530355676333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~l~dw~IsR~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (452)
T d1ilea3 241 KEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 320 (452)
T ss_dssp TTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEE
T ss_pred HHCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32034220357766200102211357763212456753555316666654236667566643333321001333432002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~v~~~w~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~d~~~~~fh~l~~~~~l~~~~~~~~~v~~hg~iL~~~G 400 (452)
T d1ilea3 321 RVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG 400 (452)
T ss_dssp ECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCCCCCCHHHEECCCEECHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCC
T ss_conf 45532145465554201102675210010035784242110676520133898986898739988875788667999998
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------9
Q 000235 1717 ---------------------------------------------------A 1717 (1815)
Q Consensus 1717 ---------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~KMSKS~gn~I~~~dll~~ygaD~lR~yl~~~~~~~~d~~Fs~~~~~e~~~~ 452 (452)
T d1ilea3 401 QKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRD 452 (452)
T ss_dssp SCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC
T ss_conf 2447889988698999988292899999994399877877699998677549
|
| >d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Uronate isomerase-like domain: Uronate isomerase TM0064 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=34081.09 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~f~~~~~ll~~~~a~~Ly~~i~~~PIiD~H~Hl~p~~~~e~~~F~~i~~l~~~~DHY~~r~mr~~Gi~e~~itg~a~~~ 80 (451)
T d1j5sa_ 1 HMFLGEDYLLTNRAAVRLFNEVKDLPIVDPHNHLDAKDIVENKPWNDIWEVEGATDHYVWELMRRCGVSEEYITGSRSNK 80 (451)
T ss_dssp CCCSSTTTTCCSHHHHHHHHHHTTSCEEESCCCCCHHHHHHTCCCSCHHHHHTTTCHHHHHHHHHTTCCGGGTTSSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCCHH
T ss_conf 98877555889679999999973898857888989778745479999799836560899999988799989926889879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ekf~~~a~~~~~~~gnP~~~w~~~el~~~fgi~~~l~~~~a~~i~~~~n~~l~~~~~r~ll~~~~Ve~v~tTddp~D~L~ 160 (451)
T d1j5sa_ 81 EKWLALAKVFPRFVGNPTYEWIHLDLWRRFNIKKVISEETAEEIWEETKKKLPEMTPQKLLRDMKVEILCTTDDPVSTLE 160 (451)
T ss_dssp HHHHHHHHHGGGGTTSHHHHHHHHHHHHHSCCCCCCSHHHHHHHHHHHHHHSTTCCHHHHHHHTTEEEEECCBCTTCCCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHEEECCCCCCCCHH
T ss_conf 99999998738863782589999999997699777880039999999998743245999999736211430699999618
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~h~~~~~~~~~~rv~p~fRpD~~l~i~~~~f~~~~~~L~~~~g~~i~s~~~~~~aL~~r~~~f~~~G~~asdhGl~~~~~ 240 (451)
T d1j5sa_ 161 HHRKAKEAVEGVTILPTWRPDRAMNVDKEGWREYVEKMGERYGEDTSTLDGFLNALWKSHEHFKEHGCVASDHALLEPSV 240 (451)
T ss_dssp HHHHHHHHCCSCEEECCBCCHHHHCTTSTTHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHTTTCCEEEEEESSCCC
T ss_pred HHHHHHCCCCCCEEECCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 89986358999558656224766432314589999998655189967699999999999988754735885467555641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~if~k~~~g~~~s~~e~~~~~~~ll~~l~~~~~~~g~~mQlH~G~~Rn~n~~~~~~~G~d~G~D~~~~~~~ 320 (451)
T d1j5sa_ 241 YYVDENRARAVHEKAFSGEKLTQDEINDYKAFMMVQFGKMNQETNWVTQLHIGALRDYRDSLFKTLGPDSGGDISTNFLR 320 (451)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECEECSCSHHHHHHTCSSSSCCEECSCCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCHHH
T ss_conf 46888889999999845899987889889999999999997535723034034344524689975089986345445078
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~l~~~L~~~~~~~k~vL~~l~~~~~~e~a~la~~f~nv~~g~~wwf~d~~~gm~~~l~~~~e~~~~sk~vg~~TDsr 400 (451)
T d1j5sa_ 321 IAEGLRYFLNEFDGKLKIVLYVLDPTHLPTISTIARAFPNVYVGAPWWFNDSPFGMEMHLKYLASVDLLYNLAGMVTDSR 400 (451)
T ss_dssp HHHHHHHHHHHSTTTSCEEEEESSGGGHHHHHHHHHHCTTEEECCCCSTTCSHHHHHHHHHHHHTTSCGGGCCCCCCCCS
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEECCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99999999985699988798968944299999997119741478744571769999999999998417222620016863
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000235 1683 --------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~f~s~~~rh~~fRril~~~L~~~V~~G~~~~~~a~~i~~dI~y~Na~~~y~ 451 (451)
T d1j5sa_ 401 KLLSFGSRTEMFRRVLSNVVGEMVEKGQIPIKEARELVKHVSYDGPKALFF 451 (451)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHC
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 121017899999999999999999869989999999999999873997609
|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage and polyadenylation specificity factor subunit 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34080.26 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
.
T Consensus 1 ~~~~~~~plGG~~eIG~n~~lv~~~~~~il~D~G~~~~~~~~~~~p~~~~~~~~~id~i~lTH~H~DH~ggLp~l~~~~~ 80 (451)
T d2i7ta1 1 SDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 80 (451)
T ss_dssp CEEEEEEEEESSSSSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSS
T ss_pred CCCEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCHHHHCCHHHHHHHCC
T ss_conf 98189997347886411399999999399995899988663223777567897569999989881787695688897548
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~pIy~s~~T~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~Gs~~~~i~ 160 (451)
T d2i7ta1 81 FKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIE 160 (451)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECCSSTTCEEEEEE
T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEECCCCEEEECCEEEEEECCCCCCCCEEEEEE
T ss_conf 99888823667666665545554310012334567589998766403200477327508879998226888875057764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~i~~tgD~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~g~~~e 240 (451)
T d2i7ta1 161 IAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQE 240 (451)
T ss_dssp ETTEEEEECCSCCCC-----CCCCCCSSCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCSSSSHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 17724784477777887444543466656414676336676566551367766667776887569727999741147889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 320 (451)
T d2i7ta1 241 LLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMAS 320 (451)
T ss_dssp HHHHHHHHHHHCGGGTTSCEEEC---------------------------------CCSEEECCCTTSSCCCSSEEEEES
T ss_pred HHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEC
T ss_conf 99999987530344441235531678999999998616543799998763048643343002200001246676289707
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~SgHss~~eL~~~i~~ 400 (451)
T d2i7ta1 321 PGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRA 400 (451)
T ss_dssp CTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCSCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCEEEEEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 60014414665544403688987984465366867766542664067614838860108999761589899999999997
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000235 1683 --------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------~ 1683 (1815)
-
T Consensus 401 i~Pk~vipvHGe~~~~~~~~~~l~~~~~~~~~~~~~v~~p~nG~~~~~~~~ 451 (451)
T d2i7ta1 401 LKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFR 451 (451)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEEEC
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECC
T ss_conf 099989997699899999999999860513556835986899987997349
|
| >d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: Ribokinase-like family: ADP-specific Phosphofructokinase/Glucokinase domain: ADP-dependent glucokinase species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=34078.02 Aligned_cols=1 Identities=0% Similarity=-1.756 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 w~~~y~~a~~~~~~~~~~~~~v~~gyN~NvDai~~~~~~~l~~ll~~~~~~~~~~~~~~~p~~I~s~~dl~~~~~~~m~~ 80 (451)
T d1l2la_ 1 WESLYEKALDKVEASIRKVRGVLLAYNTNIDAIKYLKREDLEKRIEKVGKEEVLRYSEELPKEIETIPQLLGSILWSIKR 80 (451)
T ss_dssp CHHHHHHHHHHHHHHGGGSCCEEEEECCEEEEECBCCHHHHHHHHHHHCHHHHHHHHHSCCSSBCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 91789999999987654258679999624448998368999999985173244455414983459999999999998408
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 G~aaE~~v~~~~~~~~~~~~~~~~~r~GGnAgimAn~La~lg~~~Vi~~~p~lsk~q~~~f~~~~i~~p~~~~~~~~l~~ 160 (451)
T d1l2la_ 81 GKAAELLVVSREVREYMRKWGWDELRMGGQVGIMANLLGGVYGIPVIAHVPQLSELQASLFLDGPIYVPTFERGELRLIH 160 (451)
T ss_dssp TCCEEEEBCCHHHHHHHHHHCCSEEEEESHHHHHHHHHTTTSCCCEEECCSSCCHHHHHTSCSSSEEEEC------CEEC
T ss_pred CCCEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEECC
T ss_conf 97437663588999999866654140187899999999855983389706762388899851798236301388300037
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 p~~~~~~e~d~IHlIlEY~~G~~wg~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~pdl~vlSGlq~l~~~~~~ 240 (451)
T d1l2la_ 161 PREFRKGEEDCIHYIYEFPRNFKVLDFEAPRENRFIGAADDYNPILYVREEWIERFEEIAKRSELAIISGLHPLTQENHG 240 (451)
T ss_dssp GGGC----CCCEEECCEECTTCEETTEECSSCEEEEEEECSSGGGTCCCHHHHHSHHHHHTTCSEEEEECCTTCCTTTCH
T ss_pred HHHCCCCCCCCEEEEEECCCCCEECCEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH
T ss_conf 24305799750699998079985246776878768997688876454549999999976217888999463101145425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~l~~~~~~~i~iH~ElAs~~d~~~~~~l~~vlp~vdSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~~~~~~v 320 (451)
T d1l2la_ 241 KPIKLVREHLKILNDLGIRAHLEFAFTPDEVVRLEIVKLLKHFYSVGLNEVELASVVSVMGEKELAERIISKDPADPIAV 320 (451)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCCSSHHHHHHHHHHGGGCSEEEECHHHHHHHHHHTTCHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHH
T ss_conf 79999999997357768717988443269999999997504073677589999989987179864300025799767899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~l~~~~~L~RIHvHTl~y~~~~t~~~~~~~~~al~~~a~aaaa~a~~g~~~~~~~~~~~l~~p~~~~~~~~~~~~ 400 (451)
T d1l2la_ 321 IEGLLKLIKETGVKRIHFHTYGYYLALTREKGEHVRDALLFSALAAATKAMKGNIEKLSDIREGLAVPIGEQGLEVEKIL 400 (451)
T ss_dssp HHHHHHHHHHHCCSEEEEEETTEEEEEESSCSTHHHHHHHHHHHHHHHHHHHSSCCCGGGGGGGGGSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999875998899970112134781580889999999999999999618888852056763577550037788876
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000235 1683 --------------------------------------------------T 1683 (1815)
Q Consensus 1683 --------------------------------------------------~ 1683 (1815)
-
T Consensus 401 ~~~~~~~~~~~~~~d~~i~~~PvlVc~~p~~TVGlGD~ISa~glv~ql~~~ 451 (451)
T d1l2la_ 401 EKEFSLRDGIGSIEDYQLTFIPTKVVKKPKSTVGIGDTISSSAFVSEFSLH 451 (451)
T ss_dssp HHHSCCBTTEEEETTEEEEEEECC---------CTTHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 540376678430246369997305108877764685365088998774269
|
| >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: beta-CASP RNA-metabolising hydrolases domain: Cleavage and polyadenylation specificity factor subunit 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=34077.79 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
.
T Consensus 1 ~~~~~~~plGG~~eIG~n~~lv~~~~~~il~D~G~~~~~~~~~~~p~~~~~~~~~id~i~lTH~H~DH~ggLp~l~~~~~ 80 (451)
T d2i7ta1 1 SDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 80 (451)
T ss_dssp CEEEEEEEEESSSSSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSS
T ss_pred CCCEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCHHHHCCHHHHHHHCC
T ss_conf 98189997347886411399999999399995899988663223777567897569999989881787695688897548
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~pIy~s~~T~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~Gs~~~~i~ 160 (451)
T d2i7ta1 81 FKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIE 160 (451)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEECCSSTTCEEEEEE
T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEECCCCEEEECCEEEEEECCCCCCCCEEEEEE
T ss_conf 99888823667666665545554310012334567589998766403200477327508879998226888875057764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~i~~tgD~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~g~~~e 240 (451)
T d2i7ta1 161 IAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQE 240 (451)
T ss_dssp ETTEEEEECCSCCCC-----CCCCCCSSCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCSSSSHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 17724784477777887444543466656414676336676566551367766667776887569727999741147889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 320 (451)
T d2i7ta1 241 LLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMAS 320 (451)
T ss_dssp HHHHHHHHHHHCGGGTTSCEEEC---------------------------------CCSEEECCCTTSSCCCSSEEEEES
T ss_pred HHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEEC
T ss_conf 99999987530344441235531678999999998616543799998763048643343002200001246676289707
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~SgHss~~eL~~~i~~ 400 (451)
T d2i7ta1 321 PGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRA 400 (451)
T ss_dssp CTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCSEEECTTSCEEECCSEEEECCCSCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEECCCEEEEEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 60014414665544403688987984465366867766542664067614838860108999761589899999999997
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000235 1717 --------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------~ 1717 (1815)
.
T Consensus 401 i~Pk~vipvHGe~~~~~~~~~~l~~~~~~~~~~~~~v~~p~nG~~~~~~~~ 451 (451)
T d2i7ta1 401 LKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFR 451 (451)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEEEC
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECC
T ss_conf 099989997699899999999999860513556835986899987997349
|
| >d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Uronate isomerase-like domain: Uronate isomerase TM0064 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=34077.78 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~f~~~~~ll~~~~a~~Ly~~i~~~PIiD~H~Hl~p~~~~e~~~F~~i~~l~~~~DHY~~r~mr~~Gi~e~~itg~a~~~ 80 (451)
T d1j5sa_ 1 HMFLGEDYLLTNRAAVRLFNEVKDLPIVDPHNHLDAKDIVENKPWNDIWEVEGATDHYVWELMRRCGVSEEYITGSRSNK 80 (451)
T ss_dssp CCCSSTTTTCCSHHHHHHHHHHTTSCEEESCCCCCHHHHHHTCCCSCHHHHHTTTCHHHHHHHHHTTCCGGGTTSSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCCHH
T ss_conf 98877555889679999999973898857888989778745479999799836560899999988799989926889879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ekf~~~a~~~~~~~gnP~~~w~~~el~~~fgi~~~l~~~~a~~i~~~~n~~l~~~~~r~ll~~~~Ve~v~tTddp~D~L~ 160 (451)
T d1j5sa_ 81 EKWLALAKVFPRFVGNPTYEWIHLDLWRRFNIKKVISEETAEEIWEETKKKLPEMTPQKLLRDMKVEILCTTDDPVSTLE 160 (451)
T ss_dssp HHHHHHHHHGGGGTTSHHHHHHHHHHHHHSCCCCCCSHHHHHHHHHHHHHHSTTCCHHHHHHHTTEEEEECCBCTTCCCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHEEECCCCCCCCHH
T ss_conf 99999998738863782589999999997699777880039999999998743245999999736211430699999618
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~h~~~~~~~~~~rv~p~fRpD~~l~i~~~~f~~~~~~L~~~~g~~i~s~~~~~~aL~~r~~~f~~~G~~asdhGl~~~~~ 240 (451)
T d1j5sa_ 161 HHRKAKEAVEGVTILPTWRPDRAMNVDKEGWREYVEKMGERYGEDTSTLDGFLNALWKSHEHFKEHGCVASDHALLEPSV 240 (451)
T ss_dssp HHHHHHHHCCSCEEECCBCCHHHHCTTSTTHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHTTTCCEEEEEESSCCC
T ss_pred HHHHHHCCCCCCEEECCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 89986358999558656224766432314589999998655189967699999999999988754735885467555641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~if~k~~~g~~~s~~e~~~~~~~ll~~l~~~~~~~g~~mQlH~G~~Rn~n~~~~~~~G~d~G~D~~~~~~~ 320 (451)
T d1j5sa_ 241 YYVDENRARAVHEKAFSGEKLTQDEINDYKAFMMVQFGKMNQETNWVTQLHIGALRDYRDSLFKTLGPDSGGDISTNFLR 320 (451)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECEECSCSHHHHHHTCSSSSCCEECSCCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCHHH
T ss_conf 46888889999999845899987889889999999999997535723034034344524689975089986345445078
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~l~~~L~~~~~~~k~vL~~l~~~~~~e~a~la~~f~nv~~g~~wwf~d~~~gm~~~l~~~~e~~~~sk~vg~~TDsr 400 (451)
T d1j5sa_ 321 IAEGLRYFLNEFDGKLKIVLYVLDPTHLPTISTIARAFPNVYVGAPWWFNDSPFGMEMHLKYLASVDLLYNLAGMVTDSR 400 (451)
T ss_dssp HHHHHHHHHHHSTTTSCEEEEESSGGGHHHHHHHHHHCTTEEECCCCSTTCSHHHHHHHHHHHHTTSCGGGCCCCCCCCS
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEECCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99999999985699988798968944299999997119741478744571769999999999998417222620016863
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000235 1717 --------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~f~s~~~rh~~fRril~~~L~~~V~~G~~~~~~a~~i~~dI~y~Na~~~y~ 451 (451)
T d1j5sa_ 401 KLLSFGSRTEMFRRVLSNVVGEMVEKGQIPIKEARELVKHVSYDGPKALFF 451 (451)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHC
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 121017899999999999999999869989999999999999873997609
|
| >d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: Ribokinase-like family: ADP-specific Phosphofructokinase/Glucokinase domain: ADP-dependent glucokinase species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=34076.62 Aligned_cols=1 Identities=0% Similarity=-1.922 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 w~~~y~~a~~~~~~~~~~~~~v~~gyN~NvDai~~~~~~~l~~ll~~~~~~~~~~~~~~~p~~I~s~~dl~~~~~~~m~~ 80 (451)
T d1l2la_ 1 WESLYEKALDKVEASIRKVRGVLLAYNTNIDAIKYLKREDLEKRIEKVGKEEVLRYSEELPKEIETIPQLLGSILWSIKR 80 (451)
T ss_dssp CHHHHHHHHHHHHHHGGGSCCEEEEECCEEEEECBCCHHHHHHHHHHHCHHHHHHHHHSCCSSBCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 91789999999987654258679999624448998368999999985173244455414983459999999999998408
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 G~aaE~~v~~~~~~~~~~~~~~~~~r~GGnAgimAn~La~lg~~~Vi~~~p~lsk~q~~~f~~~~i~~p~~~~~~~~l~~ 160 (451)
T d1l2la_ 81 GKAAELLVVSREVREYMRKWGWDELRMGGQVGIMANLLGGVYGIPVIAHVPQLSELQASLFLDGPIYVPTFERGELRLIH 160 (451)
T ss_dssp TCCEEEEBCCHHHHHHHHHHCCSEEEEESHHHHHHHHHTTTSCCCEEECCSSCCHHHHHTSCSSSEEEEC------CEEC
T ss_pred CCCEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCEEECC
T ss_conf 97437663588999999866654140187899999999855983389706762388899851798236301388300037
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 p~~~~~~e~d~IHlIlEY~~G~~wg~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~pdl~vlSGlq~l~~~~~~ 240 (451)
T d1l2la_ 161 PREFRKGEEDCIHYIYEFPRNFKVLDFEAPRENRFIGAADDYNPILYVREEWIERFEEIAKRSELAIISGLHPLTQENHG 240 (451)
T ss_dssp GGGC----CCCEEECCEECTTCEETTEECSSCEEEEEEECSSGGGTCCCHHHHHSHHHHHTTCSEEEEECCTTCCTTTCH
T ss_pred HHHCCCCCCCCEEEEEECCCCCEECCEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH
T ss_conf 24305799750699998079985246776878768997688876454549999999976217888999463101145425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~l~~~~~~~i~iH~ElAs~~d~~~~~~l~~vlp~vdSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~~~~~~v 320 (451)
T d1l2la_ 241 KPIKLVREHLKILNDLGIRAHLEFAFTPDEVVRLEIVKLLKHFYSVGLNEVELASVVSVMGEKELAERIISKDPADPIAV 320 (451)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCCSSHHHHHHHHHHGGGCSEEEECHHHHHHHHHHTTCHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHH
T ss_conf 79999999997357768717988443269999999997504073677589999989987179864300025799767899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~~~~~l~~~~~L~RIHvHTl~y~~~~t~~~~~~~~~al~~~a~aaaa~a~~g~~~~~~~~~~~l~~p~~~~~~~~~~~~ 400 (451)
T d1l2la_ 321 IEGLLKLIKETGVKRIHFHTYGYYLALTREKGEHVRDALLFSALAAATKAMKGNIEKLSDIREGLAVPIGEQGLEVEKIL 400 (451)
T ss_dssp HHHHHHHHHHHCCSEEEEEETTEEEEEESSCSTHHHHHHHHHHHHHHHHHHHSSCCCGGGGGGGGGSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999875998899970112134781580889999999999999999618888852056763577550037788876
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------9
Q 000235 1717 --------------------------------------------------A 1717 (1815)
Q Consensus 1717 --------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~~~~~~~~~~~~~d~~i~~~PvlVc~~p~~TVGlGD~ISa~glv~ql~~~ 451 (451)
T d1l2la_ 401 EKEFSLRDGIGSIEDYQLTFIPTKVVKKPKSTVGIGDTISSSAFVSEFSLH 451 (451)
T ss_dssp HHHSCCBTTEEEETTEEEEEEECC---------CTTHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 540376678430246369997305108877764685365088998774269
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34010.36 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~sl~~~r~~y~~a~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~ 80 (450)
T d1qsaa1 1 DSLDEQRSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVN 80 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 95589999999999999878989999998560479877999999987351569999999999878998227999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~L~~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R 160 (450)
T d1qsaa1 81 ELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLER 160 (450)
T ss_dssp HHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98765688999976668999999999999999875984889999999985478783589999999874478989999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~ 240 (450)
T d1qsaa1 161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSL 240 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99998869815699887517855899999999988585758888753788701117899999987424855799998752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r 320 (450)
T d1qsaa1 241 AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 320 (450)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 12023567999999999999998768639999999860123466699999999998829869999999865846242899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A 400 (450)
T d1qsaa1 321 WRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTA 400 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHH
T ss_conf 99999999998398156899999984578739999999829998998677995677763138598999999986994699
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1683 -------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------~ 1683 (1815)
+
T Consensus 401 ~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~d~~~lRFP 450 (450)
T d1qsaa1 401 RSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (450)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99999998679999999999999987984699999999873373530598
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34007.52 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
=
T Consensus 1 ~sl~~~r~~y~~a~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~ 80 (450)
T d1qsaa1 1 DSLDEQRSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVN 80 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 95589999999999999878989999998560479877999999987351569999999999878998227999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~L~~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R 160 (450)
T d1qsaa1 81 ELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLER 160 (450)
T ss_dssp HHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98765688999976668999999999999999875984889999999985478783589999999874478989999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~ 240 (450)
T d1qsaa1 161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSL 240 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99998869815699887517855899999999988585758888753788701117899999987424855799998752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r 320 (450)
T d1qsaa1 241 AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 320 (450)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 12023567999999999999998768639999999860123466699999999998829869999999865846242899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 ~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A 400 (450)
T d1qsaa1 321 WRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTA 400 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHH
T ss_conf 99999999998398156899999984578739999999829998998677995677763138598999999986994699
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1717 -------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------~ 1717 (1815)
+
T Consensus 401 ~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~d~~~lRFP 450 (450)
T d1qsaa1 401 RSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (450)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99999998679999999999999987984699999999873373530598
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=100.00 E-value=0 Score=34004.68 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~hvl~~p~P~~gH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T d2c1xa1 1 NPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDISDGVPEGYVFAGRPQED 80 (450)
T ss_dssp CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEECCCCCCTTCCCCCCTTHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHH
T ss_conf 98899978465758999999999999779968999766862056662144455688832653588897410000362889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (450)
T d2c1xa1 81 IELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQ 160 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHHCSSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999998877689999999727999769997783179999999819977997157515666653034223456888422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~g~~ 240 (450)
T d2c1xa1 161 GREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPF 240 (450)
T ss_dssp TCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHSSCEEECCCH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCC
T ss_conf 34421001477643015766444430352018999999998753000234333538764045654211348862332774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~l~~~~~~~~~~n 320 (450)
T d2c1xa1 241 NLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGY 320 (450)
T ss_dssp HHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHHHHHTTT
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCC
T ss_conf 34678888765365231101578642144214435568999999999999844880899977775344870344422354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 v~~~~~~pq~~lL~hp~~~~fItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai 400 (450)
T d2c1xa1 321 GMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCF 400 (450)
T ss_dssp EEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
T ss_conf 01554678376652674169970688307999998599989635400008999999997090898038983899999999
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1683 -------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~vL~d~~y~~~~~r~~~l~~~~~~a~~~~gss~~~~~~~~e~v~r~~~~ 450 (450)
T d2c1xa1 401 DQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSKPKDV 450 (450)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99961947999999999999999874169987899999999997652499
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=34003.61 Aligned_cols=1 Identities=0% Similarity=-0.162 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~ 80 (450)
T d1pmma_ 1 KKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINK 80 (450)
T ss_dssp CHHHHHHHHHHHCCTTTSGGGSSCCCCSSCCCSCCCHHHHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 93255777764011010111034443133885679978999999887446997133621201678988999999999734
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~ 160 (450)
T d1pmma_ 81 NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPV 160 (450)
T ss_dssp BTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 77885448308999999999999982899654678767415756799999999999999988664078877715885552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHV 240 (450)
T d1pmma_ 161 QICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 240 (450)
T ss_dssp CHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 79999999982997617634188875849999987521862799600451678726511566789999887416937995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 DAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~ 320 (450)
T d1pmma_ 241 DAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAG 320 (450)
T ss_dssp ECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSH
T ss_pred EHHHCCCEEEEECHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 30101634112120244330246635752474330588877268985576663332131457678875777625754117
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~ 400 (450)
T d1pmma_ 321 QVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLR 400 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 88888888864317888888888887789999999737985999679888712799996578666897899999999975
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1683 -------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------~ 1683 (1815)
+
T Consensus 401 Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~p 450 (450)
T d1pmma_ 401 GWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 450 (450)
T ss_dssp TCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98655157687767827999983699999999999999999999998493
|
| >d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: Ribokinase-like family: ADP-specific Phosphofructokinase/Glucokinase domain: ADP-specific phosphofructokinase species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=34002.69 Aligned_cols=1 Identities=0% Similarity=-0.894 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1682 P------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1682 p------------------------------------------------------------------------------- 1682 (1815)
-
T Consensus 1 ~~~~~~~i~~gyN~NvD~i~~~~~~~l~~li~~~~~~~~~~~~~~~p~~I~s~~dl~~~~~~~~~~G~aaEr~~~~~~~f 80 (450)
T d1u2xa_ 1 MIPEHLSIYTAYNANIDAIVKLNQETIQNLINAFDPDEVKRRIEEYPREINEPIDFVARLVHTLKLGKPAAVPLVNEKMN 80 (450)
T ss_dssp CCCTTCEEEEESCCEEEEEEECCHHHHHHHHHTSCHHHHHHHHHHCCSSBSSHHHHHHHHHHHHHHTCCEEEEECCTTHH
T ss_pred CCCCCCCEEEEECCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 98877517999504677999787899999998508202234431265025999999999999964797356540577899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 81 ~~l~~~~~~~~~r~GGnA~imAn~la~~g~~~vi~~~p~~sk~~~~lf~~~i~~P~v~~g~~~~~~p~~a~~~~d~~~iH 160 (450)
T d1u2xa_ 81 EWFDKTFRYEEERLGGQAGIIANTLAGLKIRKVIAYTPFLPKRLAELFKKGVLYPVVENGELQFKPIQEAYREGDPLKIN 160 (450)
T ss_dssp HHHHHHCCCSEEEEESHHHHHHHHHHHTTCSEEEEECSCCCHHHHTTSCTTEEEEEEETTEEEEEEGGGCCCTTCCCCEE
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEE
T ss_conf 99999717762143876999999998559963999279876989986435762564336742235713312557866428
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 161 lIlEy~~G~~~g~~~~~~~aPraNRfI~s~D~~nn~~l~~~e~f~~~l~~~~~~~dl~vlSGlq~l~~~~~~~~~~~~~l 240 (450)
T d1u2xa_ 161 RIFEFRKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYL 240 (450)
T ss_dssp EEEEECTTCEEEETTEEEECCSCEEEEEEECCGGGGCCSCCTTTGGGHHHHHHTCSEEEECCGGGCCSBCTTSCBHHHHH
T ss_pred EEEEECCCCEEECCCCEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECHHHHHCCCCCCHHHHHHH
T ss_conf 99982799864147841764778658995477666533241999999875165777799954443003456703499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 241 ~~~~~~l~~~~~~~i~iHlElAs~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~~lg~~~ls~~~~~~~~v~d~i~~~ 320 (450)
T d1u2xa_ 241 RRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIITNILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSILGG 320 (450)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCCHHHHHHHHHHHGGGSSEEEEEHHHHHHHHHHHTCHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHH
T ss_conf 99999997278889708999544221999999999840206627779999999998608961433156655099999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1683 -------------------------------------------------------------------------------- 1682 (1815)
Q Consensus 1683 -------------------------------------------------------------------------------- 1682 (1815)
T Consensus 321 ~~l~~~~~l~RIhvHTl~y~~~~t~~~~~~~~~~~~~al~~~~~~A~~~a~~g~~~~~~~~~~~l~~p~~~~~~~~~~~~ 400 (450)
T d1u2xa_ 321 MIILDELNFEILQVHTTYYLMYITHRDNPLSEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFNERSEYVKLRF 400 (450)
T ss_dssp HHHHHHHCCSEEEEECSSEEEEEEETTCSSCHHHHHHHHHHHHHHHHHHHHHSSCCSGGGGGGGGGSCCCTTHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHCCCCCEECC
T ss_conf 98888649988999613200115846995328999999999999999886047877778788875177000143200045
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1683 -------------------------------------------------T 1683 (1815)
Q Consensus 1683 -------------------------------------------------~ 1683 (1815)
.
T Consensus 401 ~~~~~~~~~~~~~i~~~Pvlvc~~P~~TVGlGD~ISa~gfv~~l~~~~~~ 450 (450)
T d1u2xa_ 401 EEAKSRLRMREYKVVVIPTRLVQNPVLTVGLGDTISAGAFLTYLEFLKRH 450 (450)
T ss_dssp HHHHHHSCCSSEEEEEEECCCCSSCSCCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 67766331377379996120248887643685576188999999986329
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=100.00 E-value=0 Score=34001.24 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 9-------------------------------------------------------------------------------
Q 000235 1716 P------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1716 p------------------------------------------------------------------------------- 1716 (1815)
-
T Consensus 1 ~~hvl~~p~P~~gH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T d2c1xa1 1 NPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDISDGVPEGYVFAGRPQED 80 (450)
T ss_dssp CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEECCCCCCTTCCCCCCTTHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHCCCHHHH
T ss_conf 98899978465758999999999999779968999766862056662144455688832653588897410000362889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~D~~~~~~~~~a~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (450)
T d2c1xa1 81 IELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQ 160 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHHCSSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999998877689999999727999769997783179999999819977997157515666653034223456888422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~g~~ 240 (450)
T d2c1xa1 161 GREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPF 240 (450)
T ss_dssp TCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHSSCEEECCCH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCC
T ss_conf 34421001477643015766444430352018999999998753000234333538764045654211348862332774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~l~~~~~~~~~~n 320 (450)
T d2c1xa1 241 NLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGY 320 (450)
T ss_dssp HHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTHHHHHTTT
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCC
T ss_conf 34678888765365231101578642144214435568999999999999844880899977775344870344422354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000235 1717 -------------------------------------------------------------------------------- 1716 (1815)
Q Consensus 1717 -------------------------------------------------------------------------------- 1716 (1815)
T Consensus 321 v~~~~~~pq~~lL~hp~~~~fItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai 400 (450)
T d2c1xa1 321 GMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCF 400 (450)
T ss_dssp EEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH
T ss_conf 01554678376652674169970688307999998599989635400008999999997090898038983899999999
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------9
Q 000235 1717 -------------------------------------------------A 1717 (1815)
Q Consensus 1717 -------------------------------------------------~ 1717 (1815)
-
T Consensus 401 ~~vL~d~~y~~~~~r~~~l~~~~~~a~~~~gss~~~~~~~~e~v~r~~~~ 450 (450)
T d2c1xa1 401 DQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSKPKDV 450 (450)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99961947999999999999999874169987899999999997652499
|