Citrus Sinensis ID: 001047

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170----
MYTHSILSGSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHcccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEHHHHHHHccccccccccccccccccEEEEEccccccccccccccEEEEEcccccccEEEEccccccHHHHHHHHHcccccEEEEEccccccccEEEEEEcccEEEccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHcccccccccccccEEEEEcccEEEccccEEEccccHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccEEEEEccccccccccccccccccHHHHccccccccccccccccccccEEEccccccEEEEEccccEEEEcccccccccccccccccHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccc
cccEEEccccccccEEEcccccccccccccccccccccccccccccccEEEccccccccccccccHccHccccccccHcccccccHccccccccccccccccHcHcccccccccccccccccccccEEEEcccccccccccccccccccccHcccccccccHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHccccEEEEcccEEEcccccEEEEHHHHHHHHHHccccccEccccHHEEEEEEEEcEEEEccccccEEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHccccEEEEEcccccccEEEEEcccccEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHccEEEEEEHHHHHccccccccEEEEEEEEEccccccEEcccHHHHHHccccccccccccEEEEEEEcccccHHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccEEEEEEEccccccccccEEcccccccccHHHEccccccccccccccEEEEEccccEEEEEEcHHHHEHHcccccccccHccccccccHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHcccccccccccHHccccHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHEEEEEccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHccc
mythsilsgsttfpvfantkpfsfhqfhtlshtlgfcipkpllssnsiqfqasykspksffptehkltdadeaadeydddidddddeeaadeyddvsgevsdeiqqsddefevssdsspapswreEFKWQRVEKLCNEVKEFGnemidvdelaSIYDFRIDKFQRSSIEAFLRGSsvvvsaptssgkTLIAEAAAVATVANQRRIFyttplkalsnQKFREFREtfgdnnvglltgdsaiNREAQILIMTTEILRNMLYQSVgmvssesglfdvdviVLDEvhylsdisrgtVWEEIIIYCPKEVQIICLSATVANADELAGWigqihgktelitssrrpvpltwyfstktALLPLLdekgkhmnrklsLNYLQlstsevkpykdggsrrrnsrkhadmnsnnivtsfgqhqlsknsinairrsqvpQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRIlypdavrePAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRtasgriqlTSNELFQMAGRagrrgidnrghvvlvqtpyegAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDfenghlpflclqykdsegvehsvpavylgkfdsldssklknmasiNDSFALNRlaqsngddydtqdvkpsyyvalgsdntwytFTEKWIKTVYRigfpnvalaqgdalpRETMSLLLDKGEMLWEKLAdsefgglwcmegsletwswslnvpvlsslsesdeVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHEtraldintqvifplgeTAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRlwknnssiyepsttVINVINVLDEHRSSFLELQekhgveipccldsqfSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAqipklpdvdqrlqknavdasnvmdrppiselag
mythsilsgstTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEiqqsddefevssdsspapswreefkWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYttplkalsnqKFREFRETfgdnnvglltgdsaiNREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQihgktelitssrrpVPLTWYFSTKTALLPLLDEKGKHMNRKlslnylqlstsevkpykdggsrrrnsrkhadmnsnnivTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATEtlaaginmpARTAVLSSLSKRtasgriqltsnELFQMAGRagrrgidnrGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETdvltseisddaidrkSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNValaqgdalPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKkkiartegfkeykkivdtvkfteekikrlkarskrltkrieqiepsgwkeflrISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRlwknnssiyepstTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLaqipklpdvdqrlqknavdasnvmdrppiselag
MYTHSILSGSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSIQFQASYKSPKSFFPTEHKLTdadeaadeydddidddddeeaadeyddVSGEVSDEIQQsddefevssdssPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIaeaaavatvaNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPvlsslsesdevlHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMdcalddgdlarllrrTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG
********GSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSN*I****************************************************************************EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYL********************************************INAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS**********IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHL*********************LVEQSFGNYVGSNVMLAAKDELCKIQKETDVL*********************************************MELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL**************FALN*********YDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKAR**RLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKL****************************
*********STTFPV*********************************************************************************************************************EKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLS***********************************************************VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVM********************ARKLVEQSFGNYVGSNVM******LCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRF*************SALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFAL*****************PSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDK*******************************VPV****SESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR**********SGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGI***************TTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISEL**
********GSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYDDDIDD******************************************EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK**************HADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG
*YTHSILSGSTTFPVFANTKPFSFHQFHTL*HTLGFCIPKPLLSSNSIQFQAS***********************************************************************EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTS***********************************************VPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPIS****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYTHSILSGSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPSWREEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKExxxxxxxxxxxxxxxxxxxxxMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFExxxxxxxxxxxxxxxxxxxxxIARTEGFKExxxxxxxxxxxxxxxxxxxxxxxxxxxxIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1174 2.2.26 [Sep-21-2011]
B9DFG31171 DEAD-box ATP-dependent RN yes no 0.982 0.984 0.694 0.0
P352071287 Antiviral helicase SKI2 O yes no 0.413 0.376 0.366 3e-88
Q9ZBD8920 Probable helicase HelY OS yes no 0.464 0.592 0.351 2e-86
Q10701906 Probable helicase HelY OS yes no 0.394 0.511 0.376 1e-84
O598011213 Putative ATP-dependent RN yes no 0.447 0.432 0.346 7e-84
Q154771246 Helicase SKI2W OS=Homo sa yes no 0.403 0.380 0.382 1e-81
P470471073 ATP-dependent RNA helicas no no 0.378 0.413 0.356 3e-74
O137991030 Uncharacterized helicase no no 0.366 0.417 0.366 7e-74
Q232231026 mRNA transport homolog 4 no no 0.372 0.425 0.369 9e-74
Q9CZU31040 Superkiller viralicidic a no no 0.368 0.416 0.370 7e-72
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2 Back     alignment and function desciption
 Score = 1644 bits (4256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 820/1181 (69%), Positives = 976/1181 (82%), Gaps = 28/1181 (2%)

Query: 11   TTFPVFANTKPFSFHQFH------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPT 63
             T PV + T   SF  FH      +LSH+  F   K L L+ N + F+++  S     P+
Sbjct: 2    NTLPVVSLTASSSFKFFHFPSLHRSLSHSPNFSFTKSLILNPNHLSFKSTLNS---LSPS 58

Query: 64   EHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSD-----DEFEVSSDSS 118
            + +L + ++  +E ++D      E+  DE  D    +SDEI+ SD     +E E S D  
Sbjct: 59   QSQLYEEEDDEEEEEED------EDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDL- 111

Query: 119  PAPSWRE--EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSS 176
            P  S RE  EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSS
Sbjct: 112  PTESARERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSS 171

Query: 177  VVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTG 236
            VVVSAPTSSGKTLIAEAAAV+TVA  RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTG
Sbjct: 172  VVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTG 231

Query: 237  DSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEE 296
            DSAIN++AQI+IMTTEILRNMLYQSVGM SS +GLF VD IVLDEVHYLSDISRGTVWEE
Sbjct: 232  DSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEE 291

Query: 297  IIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPL 356
            I+IYCPKEVQ+ICLSATVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPL
Sbjct: 292  IVIYCPKEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPL 351

Query: 357  LDEKGKHMNRKLSLNYLQLSTSEVK--PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLS 414
            LDEKG ++NRKLSLNYLQLS SE +     DG  +RR+ ++  D + NN+V +   + LS
Sbjct: 352  LDEKGINVNRKLSLNYLQLSASEARFRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLS 410

Query: 415  KNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSE 474
            KN IN IRRSQVPQ+ DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+  LLD+CE SE
Sbjct: 411  KNEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSE 470

Query: 475  VELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATET 534
            VELALK+FR+LYPDAVRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATET
Sbjct: 471  VELALKKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATET 530

Query: 535  LAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEG 594
            LAAGINMPARTAV+SSLSK+  + RI+L  NEL+QMAGRAGRRGID +G+ VLVQT +EG
Sbjct: 531  LAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEG 590

Query: 595  AEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKL 654
            AEECCKL+FAGV+PLVSQFTASYGMVLNL+AG+KV   S+ ++  K LQAGRSLEEA+KL
Sbjct: 591  AEECCKLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKL 650

Query: 655  VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 714
            VE+SFGNYV SNV +AAK EL +I  + ++L+SEISD+AID+KSR+LLS   YKE+  L+
Sbjct: 651  VEKSFGNYVSSNVTVAAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLK 710

Query: 715  EELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLG 774
            EEL+ EKR R E RRRMEL+RF ALK +LK  E G+LPF+CL++KDSEG E SVPAVYLG
Sbjct: 711  EELREEKRKRAEQRRRMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLG 770

Query: 775  KFDSLDSSKLKNMASINDSFALNRLA-QSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKW 833
              DS   SKL+ M S+++SFALN +  +   D+    +VKPSYYVALGSDN+WY FTEKW
Sbjct: 771  HIDSFQGSKLQKMMSLDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKW 830

Query: 834  IKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWS 893
            ++TVYR GFPN+ALA GDALPRE M  LLDK +M W+KLA+SE G LW +EGSLETWSWS
Sbjct: 831  VRTVYRTGFPNIALALGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWS 890

Query: 894  LNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVK 953
            LNVPVLSSLS+ DEVLHMS EY +A + YKEQR+K++RLKKK++R+EGF+EYKKI++   
Sbjct: 891  LNVPVLSSLSDEDEVLHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENAN 950

Query: 954  FTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAA 1013
             T EK+KRLKARS+RL  R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAA
Sbjct: 951  LTVEKMKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAA 1010

Query: 1014 IRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI 1073
            IRGENELWLAMVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++
Sbjct: 1011 IRGENELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMV 1070

Query: 1074 NVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLL 1133
            N L++ RSS ++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM+CA+D+GDLARLL
Sbjct: 1071 NFLEDQRSSLIKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLL 1130

Query: 1134 RRTIDLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
            RRTIDLLAQIPKLPD+D  LQ++A  A+++MDRPPISELAG
Sbjct: 1131 RRTIDLLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171
Essential protein required during embryogenesis. Involved in post-transcriptional gene silencing. Modulates the determination of cell fate. Necessary for normal plasmodesmata (PD) development and aperture regulation.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY PE=3 SV=1 Back     alignment and function description
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1 Back     alignment and function description
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1 Back     alignment and function description
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3 Back     alignment and function description
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1 Back     alignment and function description
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1 Back     alignment and function description
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1 Back     alignment and function description
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1174
2254248071174 PREDICTED: DEAD-box ATP-dependent RNA he 0.985 0.985 0.772 0.0
2960864801064 unnamed protein product [Vitis vinifera] 0.901 0.994 0.815 0.0
2555583401161 helicase, putative [Ricinus communis] gi 0.967 0.978 0.76 0.0
2914640711159 increased size exclusion limit 2 [Nicoti 0.977 0.990 0.725 0.0
3564978061162 PREDICTED: DEAD-box ATP-dependent RNA he 0.912 0.921 0.764 0.0
152230321171 DEAD-box ATP-dependent RNA helicase ISE2 0.982 0.984 0.694 0.0
2224229931171 AT1G70070 [Arabidopsis thaliana] 0.982 0.985 0.694 0.0
4494865741168 PREDICTED: DEAD-box ATP-dependent RNA he 0.971 0.976 0.717 0.0
4494521561193 PREDICTED: LOW QUALITY PROTEIN: DEAD-box 0.971 0.956 0.702 0.0
3574862991201 ATP-dependent RNA helicase DOB1 [Medicag 0.887 0.867 0.741 0.0
>gi|225424807|ref|XP_002267766.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1805 bits (4676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1177 (77%), Positives = 1014/1177 (86%), Gaps = 20/1177 (1%)

Query: 4    HSILSGSTTFPVFANTKPFSFHQFHTLSHTLGFCIPKPLLSSNSI--QFQASYKSPKSFF 61
            H+ L  ST     +  K   F Q H+ S  LGFC PKPL     I  +F+ SYK  +S F
Sbjct: 12   HTTLHSST----LSTDKACPFLQSHSHSRALGFCFPKPLRPPAQISSRFRISYKFRRSLF 67

Query: 62   PTEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAP 121
            P E +L+D DE  D+ DD       ++ A +  DV GE  D ++   DE E S  +S AP
Sbjct: 68   PVESQLSDVDEDDDDDDD-------DDEAADEYDVPGEALDGVE---DEIETSMATSEAP 117

Query: 122  SWR-EEFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVS 180
            + R +EFKWQRVEKLCNEV+EFG E+IDV+ELASIYDFRIDKFQR +I+AFLRGSSVVVS
Sbjct: 118  ASRSDEFKWQRVEKLCNEVREFGEELIDVEELASIYDFRIDKFQRLAIQAFLRGSSVVVS 177

Query: 181  APTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAI 240
            APTSSGKTLIAEAAAVATV+  RR+FYTTPLKALSNQKFREFRETFGDNNVGLLTGDSA+
Sbjct: 178  APTSSGKTLIAEAAAVATVSRGRRLFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAV 237

Query: 241  NREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY 300
            N++AQ+LIMTTEILRNMLYQSVGMVSS SGLF VDVIVLDEVHYLSDI RGTVWEEI+IY
Sbjct: 238  NKDAQVLIMTTEILRNMLYQSVGMVSSGSGLFHVDVIVLDEVHYLSDIYRGTVWEEIVIY 297

Query: 301  CPKEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK 360
            CPKEVQ+ICLSATVAN DELAGWI QIHGKTEL+TSS+RPVPLTW+FSTKT+LLPLLDEK
Sbjct: 298  CPKEVQLICLSATVANPDELAGWISQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEK 357

Query: 361  GKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKH-ADMNSNNIVTSFGQHQLSKNSIN 419
            GK MNRKLSL+YLQ   S    YKD  SRRRN +K  +DM+ ++  +  GQ  LSKN IN
Sbjct: 358  GKSMNRKLSLSYLQNYASGDNSYKDERSRRRNLKKRESDMSYSSFASIHGQSSLSKNDIN 417

Query: 420  AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 479
             IRRSQVPQV+DTLWHL++RDMLPAIWFIF+R+GCDA+VQYLEDCNLLDE EMSEV+LAL
Sbjct: 418  TIRRSQVPQVMDTLWHLKARDMLPAIWFIFSRKGCDASVQYLEDCNLLDESEMSEVDLAL 477

Query: 480  KRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
            KRFR+ YPDAVRE A+KGLL+GVAAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGI
Sbjct: 478  KRFRLQYPDAVRESAVKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGI 537

Query: 540  NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 599
            NMPARTAV+SSLSKR  SGRIQL+SNEL QMAGRAGRRGID  GH VLVQTPY+GAEECC
Sbjct: 538  NMPARTAVISSLSKRGESGRIQLSSNELLQMAGRAGRRGIDESGHAVLVQTPYDGAEECC 597

Query: 600  KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
            KLLFAGVEPLVSQFTASYGMVLNLLAGAKV    +ES+D+K LQAGR+LEEARKLVEQSF
Sbjct: 598  KLLFAGVEPLVSQFTASYGMVLNLLAGAKVTRRLSESNDLKVLQAGRTLEEARKLVEQSF 657

Query: 660  GNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA 719
            GNYVGSNVMLAAK+EL K++KE +VL+SE++DDAIDRKSR+LLSE AY E+ANLQEEL+A
Sbjct: 658  GNYVGSNVMLAAKEELTKVEKEIEVLSSEVTDDAIDRKSRKLLSEMAYNEIANLQEELRA 717

Query: 720  EKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL 779
            EKR RTELRRRMEL+R SALK +LK+ ENGHLPF+CLQYKDSE V+H VPAVYLGK DS 
Sbjct: 718  EKRLRTELRRRMELRRMSALKLLLKESENGHLPFVCLQYKDSEDVQHLVPAVYLGKVDSF 777

Query: 780  DSSKLKNMASINDSFALNRLA-QSNGDDYDTQ-DVKPSYYVALGSDNTWYTFTEKWIKTV 837
            D SK+KNM   ND FALN +  + N DD D+Q + KPSYYVALGSDN+WY FTEKWIKTV
Sbjct: 778  DGSKVKNMVYTNDCFALNAVVTELNVDDTDSQPNGKPSYYVALGSDNSWYLFTEKWIKTV 837

Query: 838  YRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVP 897
            YR GFPNVALAQGDALPRE M  LLDK ++ WE+LA SE GGLWC+EGSLETWSWSLNVP
Sbjct: 838  YRTGFPNVALAQGDALPREIMRALLDKADIQWEELAKSELGGLWCIEGSLETWSWSLNVP 897

Query: 898  VLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE 957
            VLSSLSE DEVL MS  Y++AVE YKEQR KV+RLKKKIARTEGFKEYKKI+D  KFTEE
Sbjct: 898  VLSSLSEDDEVLKMSQAYYEAVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEE 957

Query: 958  KIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGE 1017
            KIKRLKARS RL+ RIEQIEPSGWKEFL++SNVIHETRALDINT +IFPLGETAAAIRGE
Sbjct: 958  KIKRLKARSNRLSSRIEQIEPSGWKEFLQVSNVIHETRALDINTHIIFPLGETAAAIRGE 1017

Query: 1018 NELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLD 1077
            NELWLAMVLR+K+LL LKPAQLAAVC SLVSEGIKVR WKNNS IYE STTVINVI++LD
Sbjct: 1018 NELWLAMVLRSKVLLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLD 1077

Query: 1078 EHRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTI 1137
            E R+S L+LQEKH V+IPCCLDSQFSGMVEAWASGLTWRE+MMDCA+D+GDLARLLRRTI
Sbjct: 1078 EQRNSLLQLQEKHDVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTI 1137

Query: 1138 DLLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
            D+LAQIPKLPD+D  LQ NA+ ASNVMDRPPISELAG
Sbjct: 1138 DILAQIPKLPDIDPLLQSNAMTASNVMDRPPISELAG 1174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086480|emb|CBI32069.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558340|ref|XP_002520197.1| helicase, putative [Ricinus communis] gi|223540689|gb|EEF42252.1| helicase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|291464071|gb|ADE05573.1| increased size exclusion limit 2 [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|356497806|ref|XP_003517748.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|15223032|ref|NP_177164.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana] gi|298351833|sp|B9DFG3.2|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 25; AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 2; AltName: Full=Protein PIGMENT DEFECTIVE 317; Flags: Precursor gi|332196892|gb|AEE35013.1| DEAD-box ATP-dependent RNA helicase ISE2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222422993|dbj|BAH19480.1| AT1G70070 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449486574|ref|XP_004157336.1| PREDICTED: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452156|ref|XP_004143826.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357486299|ref|XP_003613437.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] gi|355514772|gb|AES96395.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1174
TAIR|locus:20205731171 EMB25 "EMBRYO DEFECTIVE 25" [A 0.984 0.987 0.660 0.0
CGD|CAL00021711245 orf19.6425 [Candida albicans ( 0.464 0.437 0.348 4.3e-75
POMBASE|SPCC550.03c1213 SPCC550.03c "Ski complex RNA h 0.391 0.379 0.366 8.5e-75
WB|WBGene000085021266 skih-2 [Caenorhabditis elegans 0.539 0.5 0.335 6.6e-74
ASPGD|ASPL00000049851293 AN6007 [Emericella nidulans (t 0.177 0.160 0.436 3.7e-70
DICTYBASE|DDB_G02756331128 DDB_G0275633 "superkiller vira 0.207 0.216 0.410 2.3e-66
TAIR|locus:2026001988 MTR4 "homolog of yeast MTR4" [ 0.192 0.228 0.416 7.8e-65
WB|WBGene000123421026 mtr-4 [Caenorhabditis elegans 0.219 0.251 0.361 4e-64
UNIPROTKB|G3MYJ7605 SKIV2L2 "Uncharacterized prote 0.174 0.338 0.425 1.9e-61
UNIPROTKB|F1MJX4937 SKIV2L2 "Uncharacterized prote 0.174 0.218 0.425 6.5e-60
TAIR|locus:2020573 EMB25 "EMBRYO DEFECTIVE 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3904 (1379.3 bits), Expect = 0., P = 0.
 Identities = 777/1176 (66%), Positives = 920/1176 (78%)

Query:    12 TFPVFANTKPFSFHQFH------TLSHTLGFCIPKPL-LSSNSIQFQASYKSPKSFFPTE 64
             T PV + T   SF  FH      +LSH+  F   K L L+ N + F+++  S     P++
Sbjct:     3 TLPVVSLTASSSFKFFHFPSLHRSLSHSPNFSFTKSLILNPNHLSFKSTLNS---LSPSQ 59

Query:    65 HKLTXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGEVSDEIQQXXXXXXXXXXXXPAPSWR 124
              +L                            +S E+ +                P  S R
Sbjct:    60 SQL--YEEEDDEEEEEEDEDDDDEAADEYDNISDEIRNSDDDDDDEETEFSVDLPTESAR 117

Query:   125 E--EFKWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAP 182
             E  EF+WQRVEKL + V++FG EMID+DEL SIYDFRIDKFQR +IEAFLRGSSVVVSAP
Sbjct:   118 ERVEFRWQRVEKLRSLVRDFGVEMIDIDELISIYDFRIDKFQRLAIEAFLRGSSVVVSAP 177

Query:   183 TSSGKTLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINR 242
             TSSGKTLI            RR+FYTTPLKALSNQKFREFRETFGD+NVGLLTGDSAIN+
Sbjct:   178 TSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALSNQKFREFRETFGDDNVGLLTGDSAINK 237

Query:   243 EAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCP 302
             +AQI+IMTTEILRNMLYQSVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCP
Sbjct:   238 DAQIVIMTTEILRNMLYQSVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCP 297

Query:   303 KEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGK 362
             KEVQ+ICLSATVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG 
Sbjct:   298 KEVQLICLSATVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGI 357

Query:   363 HMNRKLSLNYLQLSTSEVKPYKDG--GSRRRNSRKHA-DMNSNNIVTSFGQHQLSKNSIN 419
             ++NRKLSLNYLQLS SE + ++D   G R+R S+K   D + NN+V +   + LSKN IN
Sbjct:   358 NVNRKLSLNYLQLSASEAR-FRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEIN 415

Query:   420 AIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL 479
              IRRSQVPQ+ DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+  LLD+CE SEVELAL
Sbjct:   416 KIRRSQVPQISDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELAL 475

Query:   480 KRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 539
             K+FR+LYPDAVRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGI
Sbjct:   476 KKFRVLYPDAVRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGI 535

Query:   540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 599
             NMPARTAV+SSLSK+  + RI+L  NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECC
Sbjct:   536 NMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECC 595

Query:   600 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 659
             KL+FAGV+PLVSQFTASYGMVLNL+AG+KV   S+ ++  K LQAGRSLEEA+KLVE+SF
Sbjct:   596 KLVFAGVKPLVSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSF 655

Query:   660 GNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKA 719
             GNYV SNV +AAK EL +I  + ++L+SEISD+AID+KSR+LLS   YKE+  L+EEL+ 
Sbjct:   656 GNYVSSNVTVAAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELRE 715

Query:   720 EKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL 779
             EKR R E RRRMEL+RF ALK +LK  E G+LPF+CL++KDSEG E SVPAVYLG  DS 
Sbjct:   716 EKRKRAEQRRRMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSF 775

Query:   780 DSSKLKNMASINDSFALNRLAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVY 838
               SKL+ M S+++SFALN +      D+    +VKPSYYVALGSDN+WY FTEKW++TVY
Sbjct:   776 QGSKLQKMMSLDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVY 835

Query:   839 RIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPX 898
             R GFPN+ALA GDALPRE M  LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVP 
Sbjct:   836 RTGFPNIALALGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPV 895

Query:   899 XXXXXXXXXXXHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEK 958
                        HMS EY +A + YKEQR+K++RLKKK++R+EGF+EYKKI++    T EK
Sbjct:   896 LSSLSDEDEVLHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEK 955

Query:   959 IKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGEN 1018
             +KRLKARS+RL  R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGEN
Sbjct:   956 MKRLKARSRRLINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGEN 1015

Query:  1019 ELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE 1078
             ELWLAMVLRNK L+DLKP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++
Sbjct:  1016 ELWLAMVLRNKALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLED 1075

Query:  1079 HRSSFLELQEKHGVEIPCCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTID 1138
              RSS ++LQEKH V IPCCLD QFSGMVEAWASGL+W+EMMM               TID
Sbjct:  1076 QRSSLIKLQEKHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTID 1135

Query:  1139 LLAQIPKLPDVDQRLQKNAVDASNVMDRPPISELAG 1174
             LLAQIPKLPD+D  LQ++A  A+++MDRPPISELAG
Sbjct:  1136 LLAQIPKLPDIDPVLQRSAAAAADIMDRPPISELAG 1171
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=NAS;IMP
GO:0003724 "RNA helicase activity" evidence=ISS
GO:0010494 "cytoplasmic stress granule" evidence=IDA
GO:0016441 "posttranscriptional gene silencing" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016556 "mRNA modification" evidence=RCA
CGD|CAL0002171 orf19.6425 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
POMBASE|SPCC550.03c SPCC550.03c "Ski complex RNA helicase Ski2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
WB|WBGene00008502 skih-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000004985 AN6007 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275633 DDB_G0275633 "superkiller viralicidic activity 2-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2026001 MTR4 "homolog of yeast MTR4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00012342 mtr-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G3MYJ7 SKIV2L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJX4 SKIV2L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B9DFG3ISE2_ARATH3, ., 6, ., 4, ., 1, 30.69430.98210.9846yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.991
3rd Layer3.6.40.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1174
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 1e-159
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 1e-34
pfam08148178 pfam08148, DSHCT, DSHCT (NUC185) domain 2e-34
COG1204766 COG1204, COG1204, Superfamily II helicase [General 4e-33
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-28
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 7e-27
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 2e-24
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 3e-23
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 1e-22
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 1e-21
COG1204766 COG1204, COG1204, Superfamily II helicase [General 2e-18
TIGR04121803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 1e-17
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 6e-17
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 2e-16
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 5e-15
COG1201814 COG1201, Lhr, Lhr-like helicases [General function 1e-14
COG1205851 COG1205, COG1205, Distinct helicase family with a 3e-13
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 7e-12
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 1e-09
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 5e-09
smart0049082 smart00490, HELICc, helicase superfamily c-termina 9e-09
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 4e-08
TIGR01587358 TIGR01587, cas3_core, CRISPR-associated helicase C 5e-08
PRK13767876 PRK13767, PRK13767, ATP-dependent helicase; Provis 3e-07
cd00268203 cd00268, DEADc, DEAD-box helicases 6e-06
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-05
COG1203733 COG1203, COG1203, CRISPR-associated helicase Cas3 3e-05
cd09639353 cd09639, Cas3_I, CRISPR/Cas system-associated prot 4e-05
COG1205851 COG1205, COG1205, Distinct helicase family with a 5e-04
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 5e-04
TIGR03817742 TIGR03817, DECH_helic, helicase/secretion neighbor 0.001
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 0.002
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  502 bits (1295), Expect = e-159
 Identities = 328/1163 (28%), Positives = 485/1163 (41%), Gaps = 172/1163 (14%)

Query: 44   SSNSIQFQASYKSPKSFFPTEHKLTDADEAADEYDDDID--------DD---DDEEAADE 92
            S+++  F+   +        +     A  A +E   +ID         D   D +EA D+
Sbjct: 1    SNDTKNFRVPSEYGFVSTKEKRVERKAATAEEESLKNIDISDLFERSVDMNKDPKEATDQ 60

Query: 93   YDDVSGEVSDEIQQSDDEFEVS------SDSSPAPSWREEFKWQRVEKLCNEVKEFGNEM 146
               V      E        +V       SD +    +                       
Sbjct: 61   VKAVDKHSEIESLNVGMRLDVRLSSKELSDVAVPDDYDMVP--------------DAESP 106

Query: 147  IDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAA-AVATVANQRRI 205
             D+   A  Y F +D FQ+ +I    RG SV+V APTSSGKT++AE A A+A    QR  
Sbjct: 107  FDLAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRV- 165

Query: 206  FYTTPLKALSNQKFREFRETFGDNN--VGLLTGDSAINREAQILIMTTEILRNMLYQSVG 263
             YT+P+KALSNQK+R+    FGD    VGL+TGD +IN +A  L+MTTEILRNMLY+   
Sbjct: 166  IYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRG-- 223

Query: 264  MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 323
               SES L D++ +V DEVHY+ D  RG VWEE+II  P  V+ + LSATV NA+E A W
Sbjct: 224  ---SES-LRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEW 279

Query: 324  IGQIHGK-TELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNYLQLSTSEVK 381
            I ++H +   ++++  RPVPL  +      L  L+DEK K       S N      SE  
Sbjct: 280  IQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKV 339

Query: 382  PYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 441
               D G   R +R+                       +A   +  P++++    L   ++
Sbjct: 340  RETDDGDVGRYARRTKA-----------------LRGSAKGPAGRPEIVN---KLDKDNL 379

Query: 442  LPAIWFIFNRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PA----- 494
            LPAI F F+RRGC+ A Q L   +L L E +   +   +        +  RE P      
Sbjct: 380  LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEI 439

Query: 495  IKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 554
               LL+G+A HHAG LP  K  +EELFQ GLVKVVFATET A GINMPART V +SLSK 
Sbjct: 440  SALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKF 499

Query: 555  TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGV-EPLVSQF 613
              +G   L+  E  QM+GRAGRRG+D  G V++++ P+E        L +G  +PL SQF
Sbjct: 500  DGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQF 559

Query: 614  TASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKD 673
              SY M+LNLL   +V                  L+ A  L+E+SF  +  S  +    +
Sbjct: 560  RLSYNMILNLL---RVE----------------GLQTAEDLLERSFAQFQNSRSLPEIVE 600

Query: 674  ELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMEL 733
            +L +++KE + + +E+     +   +  L                  ++ R +L   M L
Sbjct: 601  KLERLEKELNDIATELFGTDENDAPKLSLDY----------------EKLRKKLNEEMRL 644

Query: 734  KRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDS 793
                     L+    G +            V+       L     L  +K       +  
Sbjct: 645  -----QAAGLRALRKGRV------------VQIKDGLAALFWGRLLKLTKRYTTKLTDHE 687

Query: 794  FALNRLAQSNGDDYDTQD-VKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDA 852
              L  L + N D    +  VK   ++    ++ W       I  VY +      L     
Sbjct: 688  LYLAVLVEPNADFSFPRPLVKAMPHMN--RESRWLVKILFRISFVY-LLNATEILELILT 744

Query: 853  LPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMS 912
            +PR  +S             A +                   N  +L      + V+ M 
Sbjct: 745  MPRRLLSRQGKLRRGEPSNEAIAAGL--------------DGNEKIL------ENVVEMK 784

Query: 913  FEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 972
             +              V+ LK +  R    +      D     E  I   +     L   
Sbjct: 785  IQ---------VPELTVSLLKLRFGRYHLSENPLMNFDGA---ERLI-ENELLLSDLQAE 831

Query: 973  IEQIEPSG-WKEFLRISNVIHETRALDINT---QVIFPLGETAAAIRGENELWLAMVLRN 1028
            IE +  S     FL     + E            V+   G  AA I  E+EL L  ++ +
Sbjct: 832  IEDLSSSIEALSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAEISSEDELLLTELIFS 891

Query: 1029 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 1088
                DL+P +LAA+ ++ V E  K       +   E +  + + +  L E      + Q 
Sbjct: 892  GEFNDLEPEELAALLSAFVFEE-KTDDGTAEA--PEITPALRDALLRLLELARKLNKDQN 948

Query: 1089 KHGVEIPCCLDSQFSGM---VEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPK 1145
               +EI   L+    G+   V  WA GL++ ++    +L +G   R+ RR  +LL Q+ K
Sbjct: 949  SSQIEIYPELNDFSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRK 1008

Query: 1146 LPDV--DQRLQKNAVDASNVMDR 1166
               V  +  L++ A  A   + R
Sbjct: 1009 AASVIGNPELEEKAYRAIQEIRR 1031

Length = 1041
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 Back     alignment and domain information
>gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional Back     alignment and domain information
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1174
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 100.0
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 100.0
COG45811041 Superfamily II RNA helicase [DNA replication, reco 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PTZ00110545 helicase; Provisional 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
PRK13767876 ATP-dependent helicase; Provisional 100.0
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
PF08148180 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG1201814 Lhr Lhr-like helicases [General function predictio 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 100.0
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 100.0
KOG4284980 consensus DEAD box protein [Transcription] 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
KOG0334997 consensus RNA helicase [RNA processing and modific 100.0
KOG0327397 consensus Translation initiation factor 4F, helica 100.0
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 100.0
PHA02558501 uvsW UvsW helicase; Provisional 100.0
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
COG1205851 Distinct helicase family with a unique C-terminal 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.97
KOG0354746 consensus DEAD-box like helicase [General function 99.97
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.97
PRK09401 1176 reverse gyrase; Reviewed 99.97
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.97
PRK13766773 Hef nuclease; Provisional 99.97
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 99.97
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 99.97
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.97
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.97
PRK14701 1638 reverse gyrase; Provisional 99.96
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.96
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.96
PRK05580679 primosome assembly protein PriA; Validated 99.96
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.96
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.96
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.95
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.95
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.95
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.95
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.95
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 99.95
PRK09694878 helicase Cas3; Provisional 99.95
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 99.95
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.95
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 99.94
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.94
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.94
PRK04914956 ATP-dependent helicase HepA; Validated 99.93
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.9
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.9
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 99.89
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.88
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.87
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.87
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.86
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.86
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.85
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.85
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.83
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.83
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.82
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.81
COG4096875 HsdR Type I site-specific restriction-modification 99.8
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.8
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.79
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.79
PRK05298652 excinuclease ABC subunit B; Provisional 99.78
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.77
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.77
COG11101187 Reverse gyrase [DNA replication, recombination, an 99.75
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.71
smart00487201 DEXDc DEAD-like helicases superfamily. 99.7
KOG1123776 consensus RNA polymerase II transcription initiati 99.69
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.61
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.61
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.59
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.58
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.56
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.55
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.54
KOG0387923 consensus Transcription-coupled repair protein CSB 99.53
PF13234268 rRNA_proc-arch: rRNA-processing arch domain; PDB: 99.52
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.5
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.49
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.48
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.48
COG4889 1518 Predicted helicase [General function prediction on 99.48
PRK14873665 primosome assembly protein PriA; Provisional 99.47
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.45
KOG09211282 consensus Dosage compensation complex, subunit MLE 99.45
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.38
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.37
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.33
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.3
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.29
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.27
KOG03841373 consensus Chromodomain-helicase DNA-binding protei 99.27
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.27
smart0049082 HELICc helicase superfamily c-terminal domain. 99.26
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.24
KOG1002791 consensus Nucleotide excision repair protein RAD16 99.24
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 99.17
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 99.16
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 99.06
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 99.03
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 99.03
PF02399824 Herpes_ori_bp: Origin of replication binding prote 98.98
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 98.8
KOG4439901 consensus RNA polymerase II transcription terminat 98.75
COG0610962 Type I site-specific restriction-modification syst 98.67
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 98.64
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 98.37
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 98.35
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.31
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 98.28
PRK15483986 type III restriction-modification system StyLTI en 98.26
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.21
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.21
KOG2340698 consensus Uncharacterized conserved protein [Funct 98.13
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.12
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 98.04
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 97.89
COG3587985 Restriction endonuclease [Defense mechanisms] 97.81
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.8
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.78
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.77
PRK10536262 hypothetical protein; Provisional 97.77
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.76
KOG1803649 consensus DNA helicase [Replication, recombination 97.73
PF1324576 AAA_19: Part of AAA domain 97.67
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.67
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 97.63
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.59
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 97.51
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 97.5
PRK06526254 transposase; Provisional 97.41
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.38
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.38
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.18
PRK08181269 transposase; Validated 97.09
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 97.08
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.04
PRK13889988 conjugal transfer relaxase TraA; Provisional 96.99
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 96.93
COG3421812 Uncharacterized protein conserved in bacteria [Fun 96.87
PRK04296190 thymidine kinase; Provisional 96.82
TIGR00376637 DNA helicase, putative. The gene product may repre 96.79
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.77
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.76
PRK14974336 cell division protein FtsY; Provisional 96.75
smart00382148 AAA ATPases associated with a variety of cellular 96.74
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.57
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 96.55
KOG18051100 consensus DNA replication helicase [Replication, r 96.54
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.53
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 96.53
PRK138261102 Dtr system oriT relaxase; Provisional 96.51
PRK07952244 DNA replication protein DnaC; Validated 96.46
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.43
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 96.33
PHA03333752 putative ATPase subunit of terminase; Provisional 96.32
PRK08116268 hypothetical protein; Validated 96.3
PRK12377248 putative replication protein; Provisional 96.12
PRK09183259 transposase/IS protein; Provisional 96.08
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 96.08
PRK05642234 DNA replication initiation factor; Validated 96.04
cd01124187 KaiC KaiC is a circadian clock protein primarily f 96.02
PRK06921266 hypothetical protein; Provisional 95.94
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.92
PRK08727233 hypothetical protein; Validated 95.87
PRK08084235 DNA replication initiation factor; Provisional 95.85
PRK06893229 DNA replication initiation factor; Validated 95.84
KOG10161387 consensus Predicted DNA helicase, DEAD-box superfa 95.79
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 95.76
PRK08903227 DnaA regulatory inactivator Hda; Validated 95.73
PHA02533534 17 large terminase protein; Provisional 95.73
KOG2028554 consensus ATPase related to the helicase subunit o 95.57
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 95.56
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 95.56
PRK06835329 DNA replication protein DnaC; Validated 95.52
COG1484254 DnaC DNA replication protein [DNA replication, rec 95.47
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 95.44
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 95.42
PRK00149450 dnaA chromosomal replication initiation protein; R 95.42
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 95.41
PHA03368738 DNA packaging terminase subunit 1; Provisional 95.34
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.34
TIGR00064272 ftsY signal recognition particle-docking protein F 95.27
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 95.26
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.24
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 95.2
PTZ001121164 origin recognition complex 1 protein; Provisional 95.14
TIGR00362405 DnaA chromosomal replication initiator protein Dna 95.1
PRK12402337 replication factor C small subunit 2; Reviewed 95.09
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 95.05
PRK11054684 helD DNA helicase IV; Provisional 95.02
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 95.01
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 94.87
PRK00411394 cdc6 cell division control protein 6; Reviewed 94.78
KOG03911958 consensus SNF2 family DNA-dependent ATPase [Genera 94.77
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 94.76
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 94.69
PRK11773721 uvrD DNA-dependent helicase II; Provisional 94.61
PRK08939306 primosomal protein DnaI; Reviewed 94.58
PRK12422445 chromosomal replication initiation protein; Provis 94.58
KOG02981394 consensus DEAD box-containing helicase-like transc 94.53
PRK08533230 flagellar accessory protein FlaH; Reviewed 94.51
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 94.49
PRK10416318 signal recognition particle-docking protein FtsY; 94.48
smart00492141 HELICc3 helicase superfamily c-terminal domain. 94.42
PRK00771437 signal recognition particle protein Srp54; Provisi 94.41
PRK147121623 conjugal transfer nickase/helicase TraI; Provision 94.36
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 94.32
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.28
PLN03025319 replication factor C subunit; Provisional 94.27
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 94.23
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 94.12
PRK14087450 dnaA chromosomal replication initiation protein; P 94.12
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 94.03
PRK14088440 dnaA chromosomal replication initiation protein; P 94.02
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 93.95
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 93.94
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 93.88
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 93.82
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 93.81
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 93.81
PF13173128 AAA_14: AAA domain 93.67
PTZ00293211 thymidine kinase; Provisional 93.61
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 93.51
PRK04195482 replication factor C large subunit; Provisional 93.41
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 93.4
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 93.37
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 93.37
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 93.36
PHA02544316 44 clamp loader, small subunit; Provisional 93.35
PRK11823446 DNA repair protein RadA; Provisional 93.23
PRK06067234 flagellar accessory protein FlaH; Validated 93.22
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 93.2
COG0552340 FtsY Signal recognition particle GTPase [Intracell 93.17
cd03115173 SRP The signal recognition particle (SRP) mediates 93.16
PRK137091747 conjugal transfer nickase/helicase TraI; Provision 93.12
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 93.12
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 93.07
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 93.04
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 93.03
PRK13833323 conjugal transfer protein TrbB; Provisional 93.0
PF13871278 Helicase_C_4: Helicase_C-like 92.98
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 92.97
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 92.95
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 92.94
PHA00729226 NTP-binding motif containing protein 92.94
TIGR02928365 orc1/cdc6 family replication initiation protein. M 92.93
PRK10867433 signal recognition particle protein; Provisional 92.85
TIGR027601960 TraI_TIGR conjugative transfer relaxase protein Tr 92.82
PRK05707328 DNA polymerase III subunit delta'; Validated 92.8
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 92.75
PRK09112351 DNA polymerase III subunit delta'; Validated 92.65
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 92.64
PRK14086617 dnaA chromosomal replication initiation protein; P 92.62
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 92.57
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 92.54
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 92.53
smart00491142 HELICc2 helicase superfamily c-terminal domain. 92.49
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 92.47
CHL00181287 cbbX CbbX; Provisional 92.46
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 92.45
COG2256436 MGS1 ATPase related to the helicase subunit of the 92.3
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 92.17
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 92.14
PF00004132 AAA: ATPase family associated with various cellula 92.12
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 92.1
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 92.09
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 92.02
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 91.99
cd01393226 recA_like RecA is a bacterial enzyme which has rol 91.82
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 91.8
KOG1001674 consensus Helicase-like transcription factor HLTF/ 91.74
PRK05973237 replicative DNA helicase; Provisional 91.6
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 91.51
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 91.47
PRK13894319 conjugal transfer ATPase TrbB; Provisional 91.43
PRK13851344 type IV secretion system protein VirB11; Provision 91.39
COG0630312 VirB11 Type IV secretory pathway, VirB11 component 91.32
TIGR00959428 ffh signal recognition particle protein. This mode 91.28
PHA00350399 putative assembly protein 91.23
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 91.22
TIGR03819340 heli_sec_ATPase helicase/secretion neighborhood AT 91.2
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 91.18
PRK08769319 DNA polymerase III subunit delta'; Validated 91.15
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 91.0
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 90.98
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 90.91
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 90.88
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 90.87
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 90.86
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 90.72
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 90.72
TIGR02688449 conserved hypothetical protein TIGR02688. Members 90.69
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 90.59
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 90.59
COG11971139 Mfd Transcription-repair coupling factor (superfam 90.46
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 90.45
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 90.35
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 90.26
PRK07471365 DNA polymerase III subunit delta'; Validated 90.22
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 90.22
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 90.17
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 90.14
PRK06620214 hypothetical protein; Validated 90.04
KOG15131300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 90.03
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 90.0
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 89.99
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 89.95
PRK04328249 hypothetical protein; Provisional 89.94
PRK00440319 rfc replication factor C small subunit; Reviewed 89.91
TIGR00767415 rho transcription termination factor Rho. Members 89.91
COG4626546 Phage terminase-like protein, large subunit [Gener 89.89
PRK08506472 replicative DNA helicase; Provisional 89.87
PRK06904472 replicative DNA helicase; Validated 89.76
PRK13342413 recombination factor protein RarA; Reviewed 89.66
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 89.65
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 89.54
COG0470325 HolB ATPase involved in DNA replication [DNA repli 89.5
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 89.49
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 89.37
PRK05748448 replicative DNA helicase; Provisional 89.26
PF03969362 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 89.25
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 89.19
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 89.03
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 89.03
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 88.91
PRK10436462 hypothetical protein; Provisional 88.87
PRK13341725 recombination factor protein RarA/unknown domain f 88.84
PRK07414178 cob(I)yrinic acid a,c-diamide adenosyltransferase; 88.83
PRK04841903 transcriptional regulator MalT; Provisional 88.82
PF05729166 NACHT: NACHT domain 88.72
PF12846304 AAA_10: AAA-like domain 88.66
PRK07940394 DNA polymerase III subunit delta'; Validated 88.59
PRK06964342 DNA polymerase III subunit delta'; Validated 88.54
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 88.46
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 88.23
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 88.22
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 88.21
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 88.08
PRK03992389 proteasome-activating nucleotidase; Provisional 88.07
TIGR02237209 recomb_radB DNA repair and recombination protein R 88.05
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 88.03
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 88.02
COG3973747 Superfamily I DNA and RNA helicases [General funct 87.91
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 87.9
COG2255332 RuvB Holliday junction resolvasome, helicase subun 87.78
PHA00012361 I assembly protein 87.77
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 87.76
PRK09376416 rho transcription termination factor Rho; Provisio 87.73
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 87.6
COG2109198 BtuR ATP:corrinoid adenosyltransferase [Coenzyme m 87.59
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 87.59
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 87.36
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 87.31
PRK07004460 replicative DNA helicase; Provisional 87.2
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 87.14
TIGR02012321 tigrfam_recA protein RecA. This model describes or 87.01
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 86.97
PHA03372668 DNA packaging terminase subunit 1; Provisional 86.85
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 86.83
PRK08760476 replicative DNA helicase; Provisional 86.83
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 86.81
cd01394218 radB RadB. The archaeal protein radB shares simila 86.78
PRK07399314 DNA polymerase III subunit delta'; Validated 86.74
PRK08699325 DNA polymerase III subunit delta'; Validated 86.62
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 86.5
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 86.43
TIGR02533486 type_II_gspE general secretory pathway protein E. 86.29
PRK09165497 replicative DNA helicase; Provisional 86.23
TIGR03743634 SXT_TraD conjugative coupling factor TraD, SXT/TOL 86.2
TIGR00665434 DnaB replicative DNA helicase. This model describe 86.15
cd00983325 recA RecA is a bacterial enzyme which has roles in 86.14
COG1222406 RPT1 ATP-dependent 26S proteasome regulatory subun 85.79
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 85.73
COG1221403 PspF Transcriptional regulators containing an AAA- 85.69
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 85.67
COG3972660 Superfamily I DNA and RNA helicases [General funct 85.63
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 85.55
PF03237384 Terminase_6: Terminase-like family; InterPro: IPR0 85.48
KOG0726440 consensus 26S proteasome regulatory complex, ATPas 85.25
PHA02542473 41 41 helicase; Provisional 85.21
CHL00176638 ftsH cell division protein; Validated 85.17
TIGR00595505 priA primosomal protein N'. All proteins in this f 85.14
PRK09354349 recA recombinase A; Provisional 85.06
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 85.01
PRK09087226 hypothetical protein; Validated 84.98
PRK05636505 replicative DNA helicase; Provisional 84.97
PF02534469 T4SS-DNA_transf: Type IV secretory system Conjugat 84.97
PRK13695174 putative NTPase; Provisional 84.89
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 84.8
PRK09361225 radB DNA repair and recombination protein RadB; Pr 84.7
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 84.65
PRK10865857 protein disaggregation chaperone; Provisional 84.6
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 84.59
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 84.58
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 84.58
COG0210655 UvrD Superfamily I DNA and RNA helicases [DNA repl 84.55
KOG2228408 consensus Origin recognition complex, subunit 4 [R 84.43
PRK106891147 transcription-repair coupling factor; Provisional 84.37
TIGR03754643 conj_TOL_TraD conjugative coupling factor TraD, TO 84.36
PRK06871325 DNA polymerase III subunit delta'; Validated 84.33
PRK08840464 replicative DNA helicase; Provisional 83.96
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 83.82
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 83.65
PRK06321472 replicative DNA helicase; Provisional 83.54
PRK05580679 primosome assembly protein PriA; Validated 83.24
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 83.19
PRK06090319 DNA polymerase III subunit delta'; Validated 83.06
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 82.86
TIGR00763775 lon ATP-dependent protease La. This protein is ind 82.58
cd01127410 TrwB Bacterial conjugation protein TrwB, ATP bindi 82.28
PF10443431 RNA12: RNA12 protein; InterPro: IPR018850 Mitochon 81.52
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 81.4
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 81.39
PRK08006471 replicative DNA helicase; Provisional 81.34
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 81.3
PRK14873665 primosome assembly protein PriA; Provisional 81.27
PRK12608380 transcription termination factor Rho; Provisional 81.03
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 81.02
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 80.92
PRK07773886 replicative DNA helicase; Validated 80.87
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 80.86
cd02034116 CooC The accessory protein CooC, which contains a 80.83
CHL00095821 clpC Clp protease ATP binding subunit 80.69
KOG0701 1606 consensus dsRNA-specific nuclease Dicer and relate 80.63
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 80.51
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 80.2
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 80.02
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-148  Score=1259.16  Aligned_cols=884  Identities=29%  Similarity=0.422  Sum_probs=727.5

Q ss_pred             HhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeE
Q 001047          152 LASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNV  231 (1174)
Q Consensus       152 l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v  231 (1174)
                      -++.|+|+++|||..||.++.++++|+|+|+|++|||+++.++|...++.++||||++|.+||+||+|++|...|++  |
T Consensus       122 pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~D--V  199 (1041)
T KOG0948|consen  122 PAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKD--V  199 (1041)
T ss_pred             cccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcc--c
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998  9


Q ss_pred             EEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccEEEEc
Q 001047          232 GLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS  311 (1174)
Q Consensus       232 ~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qiI~LS  311 (1174)
                      |++|||.++|+++.++|||+|+|++|||+      +...+..+.|||+||+|||.|..||.+|++.++.+|+++++++||
T Consensus       200 GLMTGDVTInP~ASCLVMTTEILRsMLYR------GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLS  273 (1041)
T KOG0948|consen  200 GLMTGDVTINPDASCLVMTTEILRSMLYR------GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLS  273 (1041)
T ss_pred             ceeecceeeCCCCceeeeHHHHHHHHHhc------cchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEe
Confidence            99999999999999999999999999998      567788999999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHhcccC-ceeeecCCCCccccEEeecc--cccccccccccccccchhhh--hhhhhcccccCCCccCC
Q 001047          312 ATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLS--LNYLQLSTSEVKPYKDG  386 (1174)
Q Consensus       312 ATl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~--~~~~~~~~~~~~~~~~~~l~--~~~l~~~~~~~~~~~~~  386 (1174)
                      ||+||+.+|++|+..++. +|+++++++||+||++|+.+  ..+++.++++++.+......  +..+...... ..++..
T Consensus       274 ATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~-~~~~~~  352 (1041)
T KOG0948|consen  274 ATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES-DGKKKA  352 (1041)
T ss_pred             ccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC-cccccc
Confidence            999999999999999886 89999999999999999665  67899999998887665442  2222111111 111111


Q ss_pred             CccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCC
Q 001047          387 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNL  466 (1174)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~  466 (1174)
                      ....++....+.                        ...-.++.++++.+..++..|+|||+||+++|+.+|.++.+..+
T Consensus       353 ~~k~~kG~~~~~------------------------~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldf  408 (1041)
T KOG0948|consen  353 NKKGRKGGTGGK------------------------GPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDF  408 (1041)
T ss_pred             ccccccCCcCCC------------------------CCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcC
Confidence            111111100000                        01123567788888889999999999999999999999999999


Q ss_pred             CCHHhHHHHHHHHHHHHhhCCccchh-----hHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCc
Q 001047          467 LDECEMSEVELALKRFRILYPDAVRE-----PAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINM  541 (1174)
Q Consensus       467 ~~~~e~~~i~~~~~~~~~~~~~~~~~-----~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDi  541 (1174)
                      .+++++..+..++......++++++.     .++++|.+||++|||||.|..++.|+.+|++|.+||||||+|+++|+||
T Consensus       409 N~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNM  488 (1041)
T KOG0948|consen  409 NTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNM  488 (1041)
T ss_pred             CChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCC
Confidence            99999999999999999988887765     6778999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccchhHHH
Q 001047          542 PARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL  621 (1174)
Q Consensus       542 P~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y~~vl  621 (1174)
                      |+.+|||....||||...+|+|.++|+||+|||||+|.|..|.||++.+..+++.....++.+..+||.|.|+.+|||+|
T Consensus       489 PAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiL  568 (1041)
T KOG0948|consen  489 PAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMIL  568 (1041)
T ss_pred             cceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHHHHHHHHHHHHHHhhhchhhhhhHHhhh
Q 001047          622 NLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRL  701 (1174)
Q Consensus       622 nll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1174)
                      |||+                 ..+.++   +.+|++||.|||+...++..++++.+++++++.+..       .+     
T Consensus       569 NLlR-----------------vEei~p---e~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i-------~~-----  616 (1041)
T KOG0948|consen  569 NLLR-----------------VEEISP---EYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINI-------PN-----  616 (1041)
T ss_pred             HHHH-----------------HccCCH---HHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccC-------CC-----
Confidence            9998                 457775   899999999999999977777777777777666642       22     


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcceEE----EeeecCCCcEeecceEEecccC
Q 001047          702 LSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLC----LQYKDSEGVEHSVPAVYLGKFD  777 (1174)
Q Consensus       702 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  777 (1174)
                        +..+.+|+.|+.+++.+.+..   ++.+ .+            |.+++||++    |..+.. |.. ..+.|++.-..
T Consensus       617 --E~~v~~yh~l~~ql~~~~k~i---~~~~-~~------------P~~~l~fLq~GRlV~v~~g-~~d-~~WGvvv~f~k  676 (1041)
T KOG0948|consen  617 --EEEVKEYHDLELQLEKYGKDI---REVI-TH------------PKYCLPFLQPGRLVKVKVG-GDD-FFWGVVVNFIK  676 (1041)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHH---HHHH-cC------------cchhcccccCCceEEEecC-CCC-CceeEEEEEEe
Confidence              678999999999998874433   3332 11            677777776    222211 111 11222221000


Q ss_pred             CCchhhhhcc-----cccchhhhhhhhccCCCCCCCCCCCCCccccccCCCCcee--eecccceeeEee--cCCCCcccc
Q 001047          778 SLDSSKLKNM-----ASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWY--TFTEKWIKTVYR--IGFPNVALA  848 (1174)
Q Consensus       778 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~  848 (1174)
                      ..+.++....     .|+++++++|.........  .....|+.   .+..+.|.  ++....+..++.  ..+|     
T Consensus       677 ~~~~~~~~~~~~p~e~Y~vdvll~~~~~~~~~~~--~~~~~p~~---~~ek~~~~vvpv~l~~i~~is~~r~~iP-----  746 (1041)
T KOG0948|consen  677 RKNSSKNSDQVGPHESYIVDVLLHCSTESSPVGA--KKVNVPPR---PNEKGEMEVVPVLLTLIDAISSIRLYIP-----  746 (1041)
T ss_pred             ccCCCCCccccCCCcceEEEEEeeeecccccccc--CcCCCCCC---CCCCCceEEEeeeHHHHhhhhHHHhcCc-----
Confidence            0001111111     5677888877532221110  01111211   12334444  344555555544  2223     


Q ss_pred             ccCCCChhhhhhhhhhhhHHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHHHH
Q 001047          849 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTK  928 (1174)
Q Consensus       849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  928 (1174)
                       ++..|.+.+..       ....  .+++..           ++++|+|+|||+.+      |.++    ...+....++
T Consensus       747 -~dl~~~d~r~~-------~~k~--v~e~~~-----------rfp~gip~LdPv~d------M~I~----~~~~~~~~~k  795 (1041)
T KOG0948|consen  747 -KDLRSVDARLS-------VLKA--VQEVKS-----------RFPDGIPLLDPVKD------MNIK----DVEFKKLVKK  795 (1041)
T ss_pred             -ccccCcchHHH-------HHHH--HHHHHH-----------hcCCCCCCcChhhc------cCcc----chHHHHHHHH
Confidence             23333222211       1111  333343           34889999999876      8887    5677888999


Q ss_pred             HHHHHHHHHhccCcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHhhHHHHHhhcCCccCCCCccChh
Q 001047          929 VARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS-GWKEFLRISNVIHETRALDINTQVIFPL 1007 (1174)
Q Consensus       929 ~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~-~~~~f~~~~~VL~~lgyl~~~~~~vt~~ 1007 (1174)
                      ++.|+.++..||.|..+.  +++.++.++++..|..++++|+++++..+.. +++|..+|.+||++|||++.++ +|..|
T Consensus       796 ~e~lE~~l~~hp~~k~~~--~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~dd-vie~K  872 (1041)
T KOG0948|consen  796 IESLEARLESHPLHKSSE--LEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDD-VIELK  872 (1041)
T ss_pred             HHHHHHhhccCcccCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCC-eEEEc
Confidence            999999999999999876  5677779999999999999999999999887 5666669999999999999886 99999


Q ss_pred             hHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 001047         1008 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQ 1087 (1174)
Q Consensus      1008 Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 1087 (1174)
                      ||+||+|+++|||++|||||+|+|++|+|+|+||+||||||++   +.    .....+.++|+.++.+|++.|++|++|+
T Consensus       873 GrvACEIsSgDELlLTEliFnG~Fndl~~eq~aaLLSCfVf~e---ks----~e~~~l~~el~~~l~~lqe~ArrIAkVs  945 (1041)
T KOG0948|consen  873 GRVACEISSGDELLLTELIFNGIFNDLPVEQAAALLSCFVFQE---KS----SEAPKLKEELAGPLRQLQESARRIAKVS  945 (1041)
T ss_pred             ceEEEEecccchHHHHHHHHhccccCCCHHHHHHHHhheeehh---cc----cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998   55    3455678999999999999999999999


Q ss_pred             HHcCCCCCCC-----CChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHHHH
Q 001047         1088 EKHGVEIPCC-----LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDA 1160 (1174)
Q Consensus      1088 ~~~~~~~~~~-----~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~~~~--~~~l~~~~~~a 1160 (1174)
                      .+|+++++.+     |+|+||++||+||+|+||.+||++|++|||+|||++|||+|||||+.+||..  |.+|..|+.+|
T Consensus       946 ~ecKlEide~~Yv~sFkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~ 1025 (1041)
T KOG0948|consen  946 KECKLEIDEEDYVESFKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEA 1025 (1041)
T ss_pred             HhhccccCHHHHHHhcChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            9999999877     9999999999999999999999999999999999999999999999999987  99999999999


Q ss_pred             HhccCCCCccc
Q 001047         1161 SNVMDRPPISE 1171 (1174)
Q Consensus      1161 ~~~i~R~~v~~ 1171 (1174)
                      +..|+||||..
T Consensus      1026 ~~~ikRDIVFA 1036 (1041)
T KOG0948|consen 1026 IKKIKRDIVFA 1036 (1041)
T ss_pred             HHHHhhceeeh
Confidence            99999999975

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PHA00350 putative assembly protein Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA00012 I assembly protein Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] Back     alignment and domain information
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain Back     alignment and domain information
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07773 replicative DNA helicase; Validated Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH) Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1174
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 4e-87
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 5e-73
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 6e-73
2va8_A715 Dna Repair Helicase Hel308 Length = 715 4e-33
2zj2_A720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 3e-17
2zj2_A720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 7e-14
2p6r_A702 Crystal Structure Of Superfamily 2 Helicase Hel308 4e-16
4f91_B1724 Brr2 Helicase Region Length = 1724 4e-16
4f91_B 1724 Brr2 Helicase Region Length = 1724 5e-10
4f92_B1724 Brr2 Helicase Region S1087l Length = 1724 5e-16
4f92_B 1724 Brr2 Helicase Region S1087l Length = 1724 5e-10
2pl3_A236 Human Dead-Box Rna Helicase Ddx10, Dead Domain In C 3e-04
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure 
Iteration: 1

 Score =  319 bits (818), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 208/624 (33%), Positives = 334/624 (53%), Gaps = 69/624 (11%)
Query: 128 KWQRVEKLCNEVKEFGNEMIDVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGK 187
           +W  V  L ++++ F +E+I     A  + F +D FQ+ ++    +G SV V+A TS+GK
Sbjct: 11  EWAHVVDLNHKIENF-DELIP--NPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGK 67
Query: 188 TLIXXXXXXXXXXNQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQIL 247
           T++          N  +  YT+P+KALSNQKFR+F+ETF D N+GL+TGD  IN +A  L
Sbjct: 68  TVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCL 127
Query: 248 IMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI 307
           IMTTEILR+MLY+   ++       DV+ ++ DEVHY++D  RG VWEE+II  P+ V+ 
Sbjct: 128 IMTTEILRSMLYRGADLIR------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181
Query: 308 ICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM-- 364
           I LSATV N  E A WIG+   K   +I++ +RPVPL      K  L+P++++  + +  
Sbjct: 182 ILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEA 241
Query: 365 NRKLSLNYLQLSTSEVKPYK--------------------DG-GSRRRNSRKHADMNSNN 403
           N +     L   +++  P K                    DG G R  ++R  A+   + 
Sbjct: 242 NFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSR 301
Query: 404 IVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 463
              + G ++    + +   +   P++++   +LR R++LP + F+F+++ C+    +LE 
Sbjct: 302 GAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEG 358
Query: 464 CNLLDECEMSE----VELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIE 518
            N  +  E S+    +E ++ R +    D  +    + LL +G+A HH G LPI K  IE
Sbjct: 359 INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418
Query: 519 ELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRG 578
            LF +G +KV+FATET A G+N+P RT + SS+ K   +G  +LT  E  QMAGRAGRRG
Sbjct: 419 ILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 478
Query: 579 IDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNLLAGAKVMHLSNESD 637
           +D+ G V+++      +    K +  GV   L SQF  +Y M+LNLL             
Sbjct: 479 LDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR------------ 526
Query: 638 DMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVL---TSEISDDAI 694
            ++AL+         ++++ SF       +    + ++  +Q+E   +   + EI D+ I
Sbjct: 527 -IEALR-------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDI 578
Query: 695 DRKSRRLLSEAAYKE-MANLQEEL 717
           ++    +L   AYKE   NL +E+
Sbjct: 579 EKFLELML---AYKEATVNLMQEM 599
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1174
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 0.0
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 0.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 0.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 4e-92
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 6e-89
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 2e-83
3b6e_A216 Interferon-induced helicase C domain-containing P; 4e-28
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 2e-15
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 4e-14
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 4e-14
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 2e-11
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 6e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 5e-10
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 6e-10
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 1e-09
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 4e-09
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 1e-08
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 1e-07
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 1e-06
3h1t_A590 Type I site-specific restriction-modification syst 3e-06
1yks_A440 Genome polyprotein [contains: flavivirin protease 2e-05
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 1e-04
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 1e-04
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 8e-04
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
 Score =  608 bits (1568), Expect = 0.0
 Identities = 246/1130 (21%), Positives = 453/1130 (40%), Gaps = 135/1130 (11%)

Query: 63   TEHKLTDADEAADEYDDDIDDDDDEEAADEYDDVSGEVSDEIQQSDDEFEVSSDSSPAPS 122
               +    +   +  ++     +  +  D+   V   V  +  + +   EV +      S
Sbjct: 78   HGLEEEKEEHEENNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNS 137

Query: 123  WREEFKWQRVEKLCNEVKEFGNEMIDVD----------ELASIYDFRIDKFQRSSIEAFL 172
               + +     +L ++V+       + D            A  Y F +D FQ ++I    
Sbjct: 138  ETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCID 197

Query: 173  RGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFGDNNVG 232
            RG SV+VSA TS+GKT++AE A   ++ N++R+ YT+P+KALSNQK+RE    FG  +VG
Sbjct: 198  RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG--DVG 255

Query: 233  LLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGT 292
            L+TGD  IN +A  L+MTTEILR+MLY+   +      + +V  ++ DEVHY+ D  RG 
Sbjct: 256  LMTGDITINPDAGCLVMTTEILRSMLYRGSEV------MREVAWVIFDEVHYMRDKERGV 309

Query: 293  VWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-TELITSSRRPVPLTWYF--ST 349
            VWEE II  P +V+ + LSAT+ NA E A WI +IH +   ++ ++ RP PL  Y   + 
Sbjct: 310  VWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH 369

Query: 350  KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFG 409
               +  ++DEK              +S           SR +  + +   ++        
Sbjct: 370  GDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSA-------- 421

Query: 410  QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDE 469
                        +      +   +  +  +   P I F F++R C+     +   +   +
Sbjct: 422  ------------KGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD 469

Query: 470  CEMSEVELALKRFRILYPDAVRE-PAIK----GLLKGVAAHHAGCLPIWKSFIEELFQRG 524
             E   +         L P+  RE P IK     L +G+  HH+G LPI K  IE LFQ G
Sbjct: 470  DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG 529

Query: 525  LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 584
             +KV+FATET + G+NMPA+T V +S+ K        ++  E  QM+GRAGRRG+D+RG 
Sbjct: 530  FLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGI 589

Query: 585  VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 644
            V+++       +    ++    + L S F   Y M+LNL+                    
Sbjct: 590  VIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMR------------------- 630

Query: 645  GRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE 704
                     ++E SF  +     +   + +L +++K+ D +  E  ++            
Sbjct: 631  -VEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEEN------------ 677

Query: 705  AAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGV 764
               KE   +++ +K  +    ++R+ +     +   + L   + G L  + +  KD+ G 
Sbjct: 678  --VKEYHEIEQAIKGYRE---DVRQVV-----THPANALSFLQPGRLVEISVNGKDNYGW 727

Query: 765  EHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDN 824
                    +     ++      + + ++S+ +N +  +   D     +KP +   L    
Sbjct: 728  -----GAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKP-FNPTLPEGI 781

Query: 825  TWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCME 884
                  EK I  V  I   ++      ++    + +  D       + +  +      + 
Sbjct: 782  RPAEEGEKSICAVIPITLDSI-----KSIGNLRLYMPKDI------RASGQKETVGKSLR 830

Query: 885  GSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQRTKVARLKK-KIARTEGFK 943
                 +   + V         D V +M  E  D ++  K+      +L    +  +   +
Sbjct: 831  EVNRRFPDGIPVL--------DPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLE 882

Query: 944  EYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQV 1003
            E            E +K+LK +       I+        +  R   V+           +
Sbjct: 883  ELYGKYSRKHDLHEDMKQLKRKISESQAVIQ------LDDLRRRKRVLRRLGFCT-PNDI 935

Query: 1004 IFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIY 1063
            I   G  A  I   +EL L  ++ N    +LKP Q AA+ +    +              
Sbjct: 936  IELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQE-------RCKEAP 988

Query: 1064 EPSTTVINVINVLDEHRSSFLELQEKHGVEIPC-----CLDSQFSGMVEAWASGLTWREM 1118
                 +   +  + E  +   ++ +   +E+           +   +V  W  G T+ ++
Sbjct: 989  RLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQI 1048

Query: 1119 MMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAVDASNVMDR 1166
                 + +G L R+ +R  +L+ ++  + +   +  L++       ++ R
Sbjct: 1049 CKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHR 1098
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Length = 590 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1174
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4ddu_A1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 100.0
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
1gku_B1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.98
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.98
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.98
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.98
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.98
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 99.97
3h1t_A590 Type I site-specific restriction-modification syst 99.97
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.96
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.96
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.93
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.93
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.93
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.93
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.93
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.93
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.93
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.93
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.93
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.93
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.93
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.92
3bor_A237 Human initiation factor 4A-II; translation initiat 99.92
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.92
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.92
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.92
3jux_A822 Protein translocase subunit SECA; protein transloc 99.92
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.91
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.91
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.9
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.87
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.84
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 99.84
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.82
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.82
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.78
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.78
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.78
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.78
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.78
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.77
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.77
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.76
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.74
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.74
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.71
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.51
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.57
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.37
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.49
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 98.15
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.83
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.83
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.74
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.67
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.55
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 97.22
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 97.21
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 96.92
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.83
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.74
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.73
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 96.67
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 96.3
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 95.99
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 95.92
2kjq_A149 DNAA-related protein; solution structure, NESG, st 95.83
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.8
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 95.74
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 95.62
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 95.45
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 95.33
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 95.32
2v1u_A387 Cell division control protein 6 homolog; DNA repli 95.32
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 95.26
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 95.24
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 95.06
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 95.03
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 94.98
2qgz_A308 Helicase loader, putative primosome component; str 94.88
3bos_A242 Putative DNA replication factor; P-loop containing 94.87
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 94.83
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 94.73
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 94.57
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 94.52
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 94.45
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 94.42
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 94.22
3co5_A143 Putative two-component system transcriptional RES 94.15
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 94.02
2chg_A226 Replication factor C small subunit; DNA-binding pr 93.99
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 93.96
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 93.85
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 93.43
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 93.43
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 93.4
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 92.98
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 92.92
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 92.92
2r6a_A454 DNAB helicase, replicative helicase; replication, 92.62
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 92.62
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 92.6
2cvh_A220 DNA repair and recombination protein RADB; filamen 92.41
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 91.95
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 91.93
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 91.78
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 91.65
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 91.58
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 91.49
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 91.45
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 91.33
2gno_A305 DNA polymerase III, gamma subunit-related protein; 91.02
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 90.94
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 90.85
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 90.8
1vma_A306 Cell division protein FTSY; TM0570, structural gen 90.64
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 90.59
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 90.56
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 90.25
1ojl_A304 Transcriptional regulatory protein ZRAR; response 90.2
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 90.19
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 90.13
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 90.06
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 89.92
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 89.75
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 89.65
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 89.58
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 89.44
1u94_A356 RECA protein, recombinase A; homologous recombinat 89.04
3hjh_A483 Transcription-repair-coupling factor; MFD, mutatio 89.01
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 88.83
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 88.45
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 88.3
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 88.01
1xp8_A366 RECA protein, recombinase A; recombination, radior 87.97
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 87.92
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 87.74
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 87.35
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 87.27
3pvs_A447 Replication-associated recombination protein A; ma 87.08
3cmu_A2050 Protein RECA, recombinase A; homologous recombinat 87.08
2fna_A357 Conserved hypothetical protein; structural genomic 86.82
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 86.74
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 86.5
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 85.32
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 85.28
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 85.14
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 84.89
2chq_A319 Replication factor C small subunit; DNA-binding pr 84.43
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 84.42
4ag6_A392 VIRB4 ATPase, type IV secretory pathway VIRB4 comp 83.97
3m6a_A543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 83.77
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 83.04
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 82.47
1e9r_A437 Conjugal transfer protein TRWB; coupling protein, 81.83
2xxa_A433 Signal recognition particle protein; protein trans 81.82
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 80.75
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 80.31
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=6.8e-119  Score=1170.84  Aligned_cols=902  Identities=26%  Similarity=0.392  Sum_probs=654.9

Q ss_pred             ChHHHhhcCCCCCCHHHHHHHHHHHcCCcEEEEccCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHHhC
Q 001047          148 DVDELASIYDFRIDKFQRSSIEAFLRGSSVVVSAPTSSGKTLIAEAAAVATVANQRRIFYTTPLKALSNQKFREFRETFG  227 (1174)
Q Consensus       148 ~~~~l~~~~~~~~~~~Q~~ai~~ll~g~~vlv~apTGsGKTlv~~~~il~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g  227 (1174)
                      ....+...++|+|+|+|.+||+.+.+|+++||+||||||||++|++|++..+.++++++|++||++|++|++++|.+.++
T Consensus       173 ~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~  252 (1108)
T 3l9o_A          173 KRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG  252 (1108)
T ss_dssp             CCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred             hhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence            33456788899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEEeCCCCCCCCCcEEEEcHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHHCCCCccE
Q 001047          228 DNNVGLLTGDSAINREAQILIMTTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI  307 (1174)
Q Consensus       228 ~~~v~lltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~l~~~~qi  307 (1174)
                        .+++++|+...+.+++|+||||++|++++++      ....+.++++|||||||++.+.+|+..|+.++..+++++|+
T Consensus       253 --~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~------~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qv  324 (1108)
T 3l9o_A          253 --DVGLMTGDITINPDAGCLVMTTEILRSMLYR------GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY  324 (1108)
T ss_dssp             --SEEEECSSCBCCCSCSEEEEEHHHHHHHHHH------CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEE
T ss_pred             --CccEEeCccccCCCCCEEEeChHHHHHHHHc------CccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceE
Confidence              4999999999999999999999999999987      34457899999999999999999999999999999999999


Q ss_pred             EEEccccCChHHHHHHHhcccC-ceeeecCCCCccccEEeecc--cccccccccccccccchhhhhhhhhcccccCCCcc
Q 001047          308 ICLSATVANADELAGWIGQIHG-KTELITSSRRPVPLTWYFST--KTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK  384 (1174)
Q Consensus       308 I~LSATl~n~~~~~~~l~~~~~-~~~~i~~~~rpvpl~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  384 (1174)
                      |+||||++|..+++.|+....+ ++.++....+|+|+.+++..  ...++.+++..+......+..........    ..
T Consensus       325 l~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~----~~  400 (1108)
T 3l9o_A          325 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ----IG  400 (1108)
T ss_dssp             EEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---------
T ss_pred             EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhh----hc
Confidence            9999999999999999998765 68899999999999887753  23344444444333222211100000000    00


Q ss_pred             CCCccccccccccCCCCCcccccccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhc
Q 001047          385 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDC  464 (1174)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~  464 (1174)
                      .. ........... ...           ...   .........+..++..+...+.+++||||++++.|+.++..|...
T Consensus       401 ~~-~~~~~~~~~~~-~~~-----------~~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~  464 (1108)
T 3l9o_A          401 DD-PNSTDSRGKKG-QTY-----------KGG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL  464 (1108)
T ss_dssp             ----------------------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred             cc-ccccccccccc-ccc-----------ccc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence            00 00000000000 000           000   000001234455666677777889999999999999999999876


Q ss_pred             CCCCHHhHHHHHHHHHHHHhhCCcc-----chhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcC
Q 001047          465 NLLDECEMSEVELALKRFRILYPDA-----VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI  539 (1174)
Q Consensus       465 ~~~~~~e~~~i~~~~~~~~~~~~~~-----~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GI  539 (1174)
                      ++.+..+...+...+.......++.     ....+...+.+||++|||+|++.+|+.+++.|++|.++|||||+++++||
T Consensus       465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI  544 (1108)
T 3l9o_A          465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL  544 (1108)
T ss_dssp             HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred             cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence            6555444444444333221111111     11245677889999999999999999999999999999999999999999


Q ss_pred             CcCCceEEEecccccCCCCccccCHHHHHHhhcccCCCCCCCccEEEEEeCCCCCHHHHHHHhhCCCcceeeeeccchhH
Q 001047          540 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM  619 (1174)
Q Consensus       540 DiP~v~vVI~~~~k~~~~~~~p~s~~~y~Qr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~~~~~~~~pl~S~f~~~y~~  619 (1174)
                      |+|++++||++..+|++....|+|+.+|+||+|||||.|.+..|+||+++++......+.+++.+.+.|+.|+|..+|+|
T Consensus       545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~  624 (1108)
T 3l9o_A          545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNM  624 (1108)
T ss_dssp             CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_pred             CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHH
Confidence            99999999999999998878899999999999999999999999999999998888889999999999999999999999


Q ss_pred             HHHHhhhchhccccCchhHHHHHHhCCCHHHHHHHHHhhHHhhhccchhhHhHHHHHHHHHHHHHHHhhhchhhhhhHHh
Q 001047          620 VLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSR  699 (1174)
Q Consensus       620 vlnll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  699 (1174)
                      +||+|+.                 .+..   ++.++++||++|+....++..++++.+++.+++.+..            
T Consensus       625 ilnll~~-----------------~~~~---~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  672 (1108)
T 3l9o_A          625 ILNLMRV-----------------EGIS---PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEV------------  672 (1108)
T ss_dssp             HHHHHHS-----------------TTCC---HHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCC------------
T ss_pred             HHHHHHh-----------------cCCC---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccc------------
Confidence            9999972                 2443   4899999999999998877766666666666554432            


Q ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcceEEEeeecCCCcEeecceEEecccCCC
Q 001047          700 RLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSL  779 (1174)
Q Consensus       700 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (1174)
                        +.++++.+|++|+.+++++++.++.+...        ....+..+.+|++  +.+  ++..|. ...++|++......
T Consensus       673 --~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~G~~--v~~--~~~~~~-~~~~~~v~~~~~~~  737 (1108)
T 3l9o_A          673 --EDEENVKEYHEIEQAIKGYREDVRQVVTH--------PANALSFLQPGRL--VEI--SVNGKD-NYGWGAVVDFAKRI  737 (1108)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHHHHHS--------HHHHHHHCCTTEE--EEE--CCTTCC-EEEEEEEEEECCCC
T ss_pred             --CchhhHHHHHHHHHHHHHHHHHHHHHHhC--------hHHHHhhCCCCCE--EEE--ecCCCc-ccceEEEEeccccc
Confidence              12679999999999999887766543321        2224556678987  333  222133 34456665422110


Q ss_pred             chh-----hhhcccccchhhhhhhhccCCCCCCCCC-CCCCcccc---ccCCCCcee--eecccceeeEeec--CCCCcc
Q 001047          780 DSS-----KLKNMASINDSFALNRLAQSNGDDYDTQ-DVKPSYYV---ALGSDNTWY--TFTEKWIKTVYRI--GFPNVA  846 (1174)
Q Consensus       780 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~  846 (1174)
                      +..     ......++++++..|........-.+.. ...| ..+   ..+.++.|.  +++...+..|+..  .+|.  
T Consensus       738 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  814 (1108)
T 3l9o_A          738 NKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLP-EGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPK--  814 (1108)
T ss_dssp             -----CCSSSSEEEEEECCCSTTCCSCCCSSCTTTTCCSGG-GSSCCSCC---CCCCCCCEESSCEEEEEEEECCCCT--
T ss_pred             ccccccccCCCCCceeEEEEeccccccccccccccccccCC-ccccCCCcccCCceEEEEechhheeeccceEEecCC--
Confidence            000     0111234455555543211100000000 0001 001   123445554  4456667777654  2331  


Q ss_pred             ccccCCCChhhhhhhhhhhhHHHHHhhhhhccCcccccCcccccccccCCCCcccccchhhhhhhccccchhHHhHHHHH
Q 001047          847 LAQGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLHMSFEYHDAVENYKEQR  926 (1174)
Q Consensus       847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  926 (1174)
                          +..+.+.+..       ....  ..++..           +++.++|.++|+.+      |++.    ...+.++.
T Consensus       815 ----~~~~~~~~~~-------~~~~--~~~~~~-----------~~~~~~~~~~~~~~------~~~~----~~~~~~~~  860 (1108)
T 3l9o_A          815 ----DIRASGQKET-------VGKS--LREVNR-----------RFPDGIPVLDPVKN------MKIE----DEDFLKLM  860 (1108)
T ss_dssp             ----TTTSHHHHHH-------HHHH--HHHHHH-----------HCSSCCTTHHHHHH------HCCC----CHHHHHHH
T ss_pred             ----CcCCHHHHHH-------HHHH--HHHHHH-----------hcCCCCcccChhhh------cccC----CHHHHHHH
Confidence                1122222211       1111  111111           23567888888643      5544    35567788


Q ss_pred             HHHHHHHHHHHhccCcchhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHhhHHHHHhhcCCccCCCCccC
Q 001047          927 TKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPS-GWKEFLRISNVIHETRALDINTQVIF 1005 (1174)
Q Consensus       927 ~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~-~~~~f~~~~~VL~~lgyl~~~~~~vt 1005 (1174)
                      .+++.|+++|.+||||.|++  +++|+++++++.+|+++++.|++++++.++. ++++|+++++||++|||||.++ +||
T Consensus       861 ~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~-~v~  937 (1108)
T 3l9o_A          861 KKIDVLNTKLSSNPLTNSMR--LEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPND-IIE  937 (1108)
T ss_dssp             HHHHHHHHHHHHSSCTTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTC-CCS
T ss_pred             HHHHHHHHHHHhCCCcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCC-cCc
Confidence            89999999999999999998  5899999999999999999999999996555 7789999999999999999875 999


Q ss_pred             hhhHHHHhhcCCchHHHHHHHHhcccCCCCHHhHHHHHhhhccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 001047         1006 PLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLE 1085 (1174)
Q Consensus      1006 ~~Gr~a~~i~~~~eLllte~l~~g~~~~L~p~~laA~~s~~v~e~~~~r~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 1085 (1174)
                      +|||+||+|+++||||+|||||+|+|++|+|+||||||||||||.   |..+    .+.+++.|.+++++++++|++|++
T Consensus       938 ~kgr~a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~---~~~~----~~~~~~~l~~~~~~~~~~~~~i~~ 1010 (1108)
T 3l9o_A          938 LKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQE---RCKE----APRLKPELAEPLKAMREIAAKIAK 1010 (1108)
T ss_dssp             HHHHHHHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC-------------------------CHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeec---ccCC----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999   6532    235689999999999999999999


Q ss_pred             HHHHcCCCCCCC-----CChhHHHHHHHHhCCCCHHHHHHhcCCChhHHHHHHHHHHHHHhhcCCCCCC--ChHHHHHHH
Q 001047         1086 LQEKHGVEIPCC-----LDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDV--DQRLQKNAV 1158 (1174)
Q Consensus      1086 ~~~~~~~~~~~~-----~~~~l~~~v~~Wa~G~~~~~i~~~t~l~eGd~vR~~rrl~dll~Qi~~~~~~--~~~l~~~~~ 1158 (1174)
                      +|.+|||+++.+     |+|+||++||+||+|+||++||++|+++|||||||||||+||||||++|+++  |++|++||+
T Consensus      1011 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~ 1090 (1108)
T 3l9o_A         1011 IMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKME 1090 (1108)
T ss_dssp             HHHHTTCSCHHHHHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHH
T ss_pred             HHHHhCCCCChHHhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            999999999753     9999999999999999999999999999999999999999999999999986  999999999


Q ss_pred             HHHhccCCCCccc
Q 001047         1159 DASNVMDRPPISE 1171 (1174)
Q Consensus      1159 ~a~~~i~R~~v~~ 1171 (1174)
                      +|+++|+||||.-
T Consensus      1091 ~a~~~i~r~iv~~ 1103 (1108)
T 3l9o_A         1091 AVLKLIHRDIVSA 1103 (1108)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHhcCCEEee
Confidence            9999999999974
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1174
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 5e-18
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 5e-18
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 9e-15
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 4e-14
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 4e-12
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 1e-11
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 6e-11
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 5e-10
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 2e-09
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 2e-08
d2eyqa3233 c.37.1.19 (A:546-778) Transcription-repair couplin 4e-08
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 2e-06
d2g9na1218 c.37.1.19 (A:21-238) Initiation factor 4a {Human ( 2e-06
d1qdea_212 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 8e-06
d2j0sa1222 c.37.1.19 (A:22-243) Probable ATP-dependent RNA he 2e-05
d1veca_206 c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma 7e-05
d1s2ma1206 c.37.1.19 (A:46-251) Putative ATP-dependent RNA he 1e-04
d1wrba1238 c.37.1.19 (A:164-401) putative ATP-dependent RNA h 9e-04
d1t6na_207 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 0.003
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 81.5 bits (200), Expect = 5e-18
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 5/165 (3%)

Query: 443 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 502
             + F   RRG +     L              +  L+         + E     + KG 
Sbjct: 42  GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE----CVRKGA 97

Query: 503 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 562
           A HHAG L   +  +E+ F+RG +KVV AT TLAAG+N+PAR  ++ SL +       ++
Sbjct: 98  AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD-GYSKRI 156

Query: 563 TSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 607
             +E  QMAGRAGR G+D RG  +++    +      + +F   E
Sbjct: 157 KVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPE 201
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 233 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1174
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.97
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.95
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.95
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.94
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.94
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.94
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.94
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.93
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.93
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.92
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.92
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.91
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.86
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.86
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.86
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.83
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.83
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.82
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.81
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.8
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.8
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.78
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.78
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.77
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.74
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.74
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.73
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.72
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.71
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.7
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.68
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.58
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.47
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.46
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.43
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.39
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.37
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.13
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.07
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.05
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.92
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.78
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.37
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.15
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.95
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 97.85
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.42
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.14
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 96.8
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 96.43
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 95.99
d1ls1a2207 GTPase domain of the signal sequence recognition p 95.92
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 95.82
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 95.64
d1okkd2207 GTPase domain of the signal recognition particle r 95.56
d2qy9a2211 GTPase domain of the signal recognition particle r 95.23
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 95.18
d1vmaa2213 GTPase domain of the signal recognition particle r 94.96
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 94.49
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.24
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 93.9
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 93.83
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 93.82
d1j8yf2211 GTPase domain of the signal sequence recognition p 93.78
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 93.77
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 93.4
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 93.27
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 92.73
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 92.56
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 91.54
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 91.42
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 91.37
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 89.89
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 89.23
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 88.53
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 88.04
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 87.83
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 86.46
d1g5ta_157 ATP:corrinoid adenosyltransferase CobA {Salmonella 85.4
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 84.13
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 83.27
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 83.0
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 82.33
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 82.25
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 81.76
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 80.81
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=99.97  E-value=4.9e-32  Score=305.46  Aligned_cols=274  Identities=14%  Similarity=0.091  Sum_probs=181.9

Q ss_pred             HHcCCcEEEEccCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCcEEEE
Q 001047          171 FLRGSSVVVSAPTSSGKTLIAEAAAVA-TVANQRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAINREAQILIM  249 (1174)
Q Consensus       171 ll~g~~vlv~apTGsGKTlv~~~~il~-~l~~g~rvlvl~PtraLa~Q~~~~l~~~~g~~~v~lltGd~~~~~~~~IlV~  249 (1174)
                      +.+|++++|.||||||||++|+.+++. .+.++.+++|++||++|++|++++|++.....  .....+........|+++
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~   83 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRY--QTPAIRAEHTGREIVDLM   83 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBC--CC--------CCCSEEEE
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCcce--eeeEEeecccCccccccC
Confidence            457899999999999999999877765 45578899999999999999999988743322  222223334567899999


Q ss_pred             cHHHHHHHHhcccccccCCCCCCceeEEEEccccccccCCcHHHHHHHHHH--CCCCccEEEEccccCChHHHHHHHhcc
Q 001047          250 TTEILRNMLYQSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELAGWIGQI  327 (1174)
Q Consensus       250 Tpe~L~~~L~~~~~~~~~~~~l~~v~lVIiDEaH~l~d~~~g~~~e~ii~~--l~~~~qiI~LSATl~n~~~~~~~l~~~  327 (1174)
                      |++.|..++..       ...+.++++||+||||++.++.+.  ...++..  .....+++++|||+++...        
T Consensus        84 t~~~l~~~~~~-------~~~~~~~~~vViDE~H~~~~~~~~--~~~~l~~~~~~~~~~~v~~SAT~~~~~~--------  146 (305)
T d2bmfa2          84 CHATFTMRLLS-------PIRVPNYNLIIMDEAHFTDPASIA--ARGYISTRVEMGEAAGIFMTATPPGSRD--------  146 (305)
T ss_dssp             EHHHHHHHHTS-------SSCCCCCSEEEEESTTCCSHHHHH--HHHHHHHHHHHTSCEEEEECSSCTTCCC--------
T ss_pred             CcHHHHHHHhc-------CccccceeEEEeeeeeecchhhHH--HHHHHHHhhccccceEEEeecCCCccee--------
Confidence            99999887754       456789999999999998754321  2222221  2356899999999863210        


Q ss_pred             cCceeeecCCCCccccEEeecccccccccccccccccchhhhhhhhhcccccCCCccCCCccccccccccCCCCCccccc
Q 001047          328 HGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTS  407 (1174)
Q Consensus       328 ~~~~~~i~~~~rpvpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (1174)
                             ....+..|.......              +....                                       
T Consensus       147 -------~~~~~~~~~~~~~~~--------------~~~~~---------------------------------------  166 (305)
T d2bmfa2         147 -------PFPQSNAPIMDEERE--------------IPERS---------------------------------------  166 (305)
T ss_dssp             -------SSCCCSSCEEEEECC--------------CCCSC---------------------------------------
T ss_pred             -------eecccCCcceEEEEe--------------ccHHH---------------------------------------
Confidence                   000111111100000              00000                                       


Q ss_pred             ccccccchhhhhhhhhcCchhHHHHHHHHHhCCCCCeEEEecCHHHHHHHHHHhhhcCCCCHHhHHHHHHHHHHHHhhCC
Q 001047          408 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYP  487 (1174)
Q Consensus       408 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~IVF~~sr~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~~~  487 (1174)
                            .           . ..   +. ......+++||||++++.|+.++..|...++                     
T Consensus       167 ------~-----------~-~~---~~-~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~---------------------  203 (305)
T d2bmfa2         167 ------W-----------N-SG---HE-WVTDFKGKTVWFVPSIKAGNDIAACLRKNGK---------------------  203 (305)
T ss_dssp             ------C-----------S-SC---CH-HHHSSCSCEEEECSCHHHHHHHHHHHHHHTC---------------------
T ss_pred             ------H-----------H-HH---HH-HHHhhCCCEEEEeccHHHHHHHHHHHHhCCC---------------------
Confidence                  0           0 00   00 1123456899999999999999999986654                     


Q ss_pred             ccchhhHHhhhccceeEecCCCCHHHHHHHHHHHhcCCceEEEechhhhhcCCcCCceEEEeccc-----ccCCC-----
Q 001047          488 DAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS-----KRTAS-----  557 (1174)
Q Consensus       488 ~~~~~~l~~~L~~gv~~~Hsgl~~~~R~~v~~~F~~G~ikVLVAT~tla~GIDiP~v~vVI~~~~-----k~~~~-----  557 (1174)
                                   .+..+||++.+..+    ..|++|..+++|||+++++|+|++...+|..+..     .+++.     
T Consensus       204 -------------~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~  266 (305)
T d2bmfa2         204 -------------KVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVIL  266 (305)
T ss_dssp             -------------CCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEE
T ss_pred             -------------CEEEeCCcChHHHH----hhhhccchhhhhhhHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEE
Confidence                         57889999876544    4688999999999999999999976554422110     11111     


Q ss_pred             -CccccCHHHHHHhhcccCCCCCCCcc
Q 001047          558 -GRIQLTSNELFQMAGRAGRRGIDNRG  583 (1174)
Q Consensus       558 -~~~p~s~~~y~Qr~GRAGR~G~d~~G  583 (1174)
                       ...|.|..+|+||+|||||.|....+
T Consensus       267 ~~~~~~s~~~~~Qr~GR~GR~~~~~~~  293 (305)
T d2bmfa2         267 AGPMPVTHSSAAQRRGRVGRNPKNEND  293 (305)
T ss_dssp             EEEEECCHHHHHHHHTTSSCSSSCCCE
T ss_pred             eccccCCHHHHhhhhcCcCcCCCCceE
Confidence             23688999999999999999943333
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure