Citrus Sinensis ID: 003501

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-----
MADTTTMSNVEDRPSKTLKRKRAWPALTGEDKESRIRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCTYNGL
cccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccHHcccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccHHHHHccccEEEEEccccccccEEEcccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHccccccccccHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHcccHHHHHEcccccccccEccccccccEEcccccccccccccEEEcccHHHccccccccccccccccccccccccccccccccccEccccccccccccccccccccccHHHcccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEHHHHHHccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccc
madtttmsnvedrpsktlkrkrawpaltgedkeSRIRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVmygvsnadtdileddaEASLWCwetrdvkllpksvrgsLRIRRTFRKKIHERITAVSAMITALqksesdpsFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTscqndessprAITSVLLSKNSEQLPEAVTKLVDSTlssndeiniddIRRSHLsswhrfghfvrsnrnqhwgirrkpkTELFKELKltnrglghdddlsmersedrceaqtvddkscitssdsssaiTKCKRWKQLLQfdkshrpafygiwpkkshivgprhplmkdpdldydidsdeeweeeepgeslsdcekdgdeegcskaddedesedgffvpdgylsedegvqvdrmeidlsaedtksspsykqeleskesCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPllmaedlsgtsnMEQKCLQAlsirpfpgdlhVEITVDimddenekdclsngkgsttlisesdlPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIElgyspdknggrakGIATFfskrclppdgkslnpneasplsslkpgsavhgqhgctyngl
madtttmsnvedrpsktlkrkrawpaltgedkesrirRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKengseklgvGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWcwetrdvkllpksvrgslrirrtfrkkihERITAVSAMITalqksesdpsFINDLMKASKKLGKVLSEASIRVLVDSMLKKNgaeivekdakreEKILIKqleknkrevekekkrmdceqqkeklhserelkrlqeeaerderrrekeeadirkqirkqqeeadkeqrhrekeeaemKKKLALQKQASMMERFLKRSKILtscqndessprAITSVLlsknseqlPEAVTKLVdstlssndeiNIDDIRRSHLSSWHRfghfvrsnrnqhwgirrkpktelfkelkltnrglghdddlsmERSEDRCeaqtvddkscitssdsssaitKCKRWKQLLQFDKSHRPAFYgiwpkkshivgprhplmkDPDLDYDIDSDEEWEEeepgeslsdcekdGDEEGCSkaddedesedgffvpdgylsedegVQVDRMEIDlsaedtksspsykqeleskescaLVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGsttlisesdlpAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVReisdfnfaenrwQVKREILIElgyspdknggrAKGIATFFSKRCLPPDGKSLNPNEASplsslkpgsavhgqhgctyngl
MADTTTMSNVEDRPSKTLKRKRAWPALTGEDKESRIRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLeknkrevekekkrMDCEQQKEKLHSERELKRLQeeaerderrrekeeadirkQIRKQQEEADKEQRHRekeeaemkkklalqkqaSMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRGLGHDDDLSMERSEDRCEAQTVddkscitssdsssaitkckRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLdydidsdeeweeeepgeslsdceKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCTYNGL
***********************************IRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRKKIHERITAVSAMITAL*******************LGKVLSEASIRVLVDSML*******************************************************************************************************************************************************************INIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRK**TELFK*******************************************ITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIV*****************************************************************************************************V**RKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMD***************TLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRC************************************
****************************************EEVKWLFGYYK***************AGSLNGMVAALMEESELPLTKLVEEIHVKLK***********AAVKSAVLFVGQRVMY**********EDDAEASLWCWETRDV**********************************************************************************************************************************************************************************************************************************************************************************************************************************CKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEE**************************SEDGFFVPDGYLSED********************************CALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAED****SNMEQKCLQALSI****************************************PAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIE***********************************************************
********************KRAWPALTGEDKESRIRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKN**********************ERELKRL*********************************************KLALQKQASMMERFLKRSKILT*********RAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRGLGHDDDL*****************************TKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDS**********************************EDGFFVPDGYLSEDEGVQVDRMEIDLSA********************LVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCTYNGL
************************PALTGEDKESRIRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNG***VEKDAKREEKILIKQLEKNKRE*********************************************************************KK*LALQKQA***ERFLKRS************************************DS*LSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLT***************************************TKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEW*******************************DGFFVPDGYL*E*********************PSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVD**********************ESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYS********K*********C************************************
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MADTTTMSNVEDRPSKTLKRKRAWPALTGEDKESRIRRFNEEVKWLFGYYKEMITNQRLTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKLALQKQASMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKPKTELFKELKLTNRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGYSPDKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCTYNGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query815 2.2.26 [Sep-21-2011]
Q9SXY0815 Chromatin assembly factor yes no 0.948 0.948 0.544 0.0
B2ZX90940 Chromatin assembly factor yes no 0.919 0.796 0.432 1e-153
A0JMT0885 Chromatin assembly factor N/A no 0.111 0.102 0.585 2e-12
Q5R1T0937 Chromatin assembly factor yes no 0.107 0.093 0.553 5e-11
A6QLA6964 Chromatin assembly factor yes no 0.109 0.092 0.574 6e-11
Q98TA5896 Chromatin assembly factor N/A no 0.158 0.143 0.409 1e-09
Q9QWF0911 Chromatin assembly factor yes no 0.152 0.136 0.485 3e-09
A0JMK9863 Chromatin assembly factor yes no 0.112 0.106 0.567 5e-09
Q13111956 Chromatin assembly factor yes no 0.109 0.093 0.553 8e-09
>sp|Q9SXY0|FAS1_ARATH Chromatin assembly factor 1 subunit FAS1 OS=Arabidopsis thaliana GN=FAS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/810 (54%), Positives = 573/810 (70%), Gaps = 37/810 (4%)

Query: 1   MADTTTMSNVEDR-----PSKTLKRKR---AWPALTGEDKESRIRRFNEEVKWLFGYYKE 52
           M + +T++  E+R     P K  KRKR   A   LT E+KES+I   N E+K LF Y++E
Sbjct: 1   MDEVSTVNENENRKTMIEPKKLNKRKREPTAIENLTSEEKESQISSLNLEMKGLFDYFRE 60

Query: 53  MITNQR---LTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLA 109
           ++   +   L    SEC+ SLN MVA LMEE  LPL+KLV+EI++KLKE       V + 
Sbjct: 61  VMDKSKRTDLFSGFSECS-SLNSMVALLMEEMSLPLSKLVDEIYLKLKEKTE---SVTMV 116

Query: 110 AVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRK 169
           AVKSAV+ VGQRV YGV N D D+LEDD+E+ LWCWETRD+K++P SVRG L++RRT RK
Sbjct: 117 AVKSAVVSVGQRVSYGVLNVDADVLEDDSESCLWCWETRDLKIMPSSVRGVLKLRRTCRK 176

Query: 170 KIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEI 229
           KIHERITAVSAM+ ALQ+ E++  + +DL KA++KLGK+LSE  IR  +D+M++KN +E+
Sbjct: 177 KIHERITAVSAMLAALQREETEKLWRSDLSKAAEKLGKILSEVDIRSFMDNMMQKNSSEM 236

Query: 230 VEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRRE 289
            EKD+KREEK+L+KQLEKN+ E EKEKKRM+ +  KEKL  E+E K LQ +A  DE  +E
Sbjct: 237 AEKDSKREEKLLLKQLEKNRCEAEKEKKRMERQVLKEKLQQEKEQKLLQ-KAIVDENNKE 295

Query: 290 KEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTSCQND 349
           KEE + RK+I+KQQ+E++KEQ+ REKE+AE+KK+L +QKQAS+MERFLK+SK  +  Q  
Sbjct: 296 KEETESRKRIKKQQDESEKEQKRREKEQAELKKQLQVQKQASIMERFLKKSKDSSLTQPK 355

Query: 350 ESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSN 409
             S       L     E     V + +D+  S+  E  +DDIRR H +SW + GH + S+
Sbjct: 356 LPSSEVTAQELSCTKHENEIGKVVQAIDNAFSTTCEATVDDIRREHFASWRQLGHLLSSS 415

Query: 410 RNQHWGIRRKPKTELFKELKL-TNRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSS 468
           + +HWG+RR+PK+ELF +LKL TN G+  D + +ME+  D CE    D + C     SSS
Sbjct: 416 K-KHWGMRRQPKSELFPKLKLSTNSGVTSDGEPNMEKQGDGCEENNFDGRQC---KPSSS 471

Query: 469 AITKCKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEP 528
              K +R KQLLQFDKS RP FYGIWP +S +V PR PL KDP+LDY++DSDEEWEEEE 
Sbjct: 472 NRKKSRRVKQLLQFDKSCRPGFYGIWPSQSQVVKPRRPLQKDPELDYEVDSDEEWEEEEA 531

Query: 529 GESLSDCEKDGD---EEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTK 585
           GESLSDCEKD D   EEGCSKADDED+SED F VPDGYLSEDEGVQVDRM+ID S +D  
Sbjct: 532 GESLSDCEKDEDESLEEGCSKADDEDDSEDDFMVPDGYLSEDEGVQVDRMDIDPSEQDAN 591

Query: 586 SSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTS 645
           ++ S KQ+ ES E CAL++Q+K+L +LT+ AL+K QPLII NL HEKV LL A+DL GT 
Sbjct: 592 TT-SSKQDQESPEFCALLQQQKHLQNLTDHALKKTQPLIICNLTHEKVSLLAAKDLEGTQ 650

Query: 646 NMEQKCLQALSIRPFPGDLHVEITV-DIMDDENEKDCLSNGKGS------TTLISESDLP 698
            +EQ CL+AL +R FP    +EI++ DI D++ E    S  + +        +I +SDL 
Sbjct: 651 KVEQICLRALMVRQFPWSSLIEISINDIQDEDQEASKFSCSQSTPPSNSKAKIIPDSDLL 710

Query: 699 AIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELG 758
            +VS IQSCS  +N+++E LQQKFP + + +LR KVREISDF   ++RWQVK+E+L +LG
Sbjct: 711 TVVSTIQSCSQGINRVVETLQQKFPDVPKTKLRQKVREISDFE--DSRWQVKKEVLTKLG 768

Query: 759 Y--SPDKNGGR-AKGIATFFSKRCLPPDGK 785
              SPDK G R  K I+TFFSKRCLPP  K
Sbjct: 769 LSPSPDKGGKRLPKTISTFFSKRCLPPSTK 798
Component of the chromatin assembly factor complex (CAF-1) involved in chromatin assembly following DNA replication and DNA repair. Assembles histone octamers onto replicating DNA in vitro. Required for several aspects of development, including seedling growth and leaf hair differentiation. Plays a critical role in the organization of shoot apical meristem (SAM) and root apical meristem (RAM) during postembryonic development by facilitating stable maintenance of gene expression states. Seems not required to maintain transcriptional repression of heterochromatic genes. Involved in heterologous recombination. May repress endocycle.
Arabidopsis thaliana (taxid: 3702)
>sp|B2ZX90|FAS1_ORYSJ Chromatin assembly factor 1 subunit FSM OS=Oryza sativa subsp. japonica GN=FSM PE=2 SV=1 Back     alignment and function description
>sp|A0JMT0|CA1AB_XENLA Chromatin assembly factor 1 subunit A-B OS=Xenopus laevis GN=chaf1a-b PE=2 SV=2 Back     alignment and function description
>sp|Q5R1T0|CAF1A_CHICK Chromatin assembly factor 1 subunit A OS=Gallus gallus GN=CHAF1A PE=1 SV=1 Back     alignment and function description
>sp|A6QLA6|CAF1A_BOVIN Chromatin assembly factor 1 subunit A OS=Bos taurus GN=CHAF1A PE=2 SV=1 Back     alignment and function description
>sp|Q98TA5|CA1AA_XENLA Chromatin assembly factor 1 subunit A-A OS=Xenopus laevis GN=chaf1a-a PE=2 SV=1 Back     alignment and function description
>sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A OS=Mus musculus GN=Chaf1a PE=1 SV=1 Back     alignment and function description
>sp|A0JMK9|CAF1A_DANRE Chromatin assembly factor 1 subunit A OS=Danio rerio GN=chaf1a PE=1 SV=1 Back     alignment and function description
>sp|Q13111|CAF1A_HUMAN Chromatin assembly factor 1 subunit A OS=Homo sapiens GN=CHAF1A PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query815
255547450823 chromatin assembly factor 1, subunit A, 0.986 0.976 0.616 0.0
317106648846 JHL23J11.8 [Jatropha curcas] 0.988 0.952 0.610 0.0
147836503872 hypothetical protein VITISV_008038 [Viti 0.965 0.902 0.573 0.0
449442241831 PREDICTED: chromatin assembly factor 1 s 0.974 0.955 0.558 0.0
449477758831 PREDICTED: LOW QUALITY PROTEIN: chromati 0.974 0.955 0.558 0.0
356566959838 PREDICTED: uncharacterized protein LOC10 0.955 0.929 0.538 0.0
356530013844 PREDICTED: uncharacterized protein LOC10 0.969 0.936 0.528 0.0
15220980815 chromatin assembly factor-1 (FASCIATA1) 0.948 0.948 0.544 0.0
334183657807 chromatin assembly factor-1 (FASCIATA1) 0.938 0.947 0.538 0.0
297841057814 hypothetical protein ARALYDRAFT_894101 [ 0.943 0.944 0.543 0.0
>gi|255547450|ref|XP_002514782.1| chromatin assembly factor 1, subunit A, putative [Ricinus communis] gi|223545833|gb|EEF47336.1| chromatin assembly factor 1, subunit A, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/830 (61%), Positives = 638/830 (76%), Gaps = 26/830 (3%)

Query: 1   MADTTTMS-NVEDRPSKTLKRKRA--WPALTGEDKESRIRRFNEEVKWLFGYYKEMITNQ 57
           M +++ M  +++D P KTLKRKRA     LT E K +++    +E++ L+GYY EM+  +
Sbjct: 1   MVESSRMVIDLDDEPKKTLKRKRASLTSVLTIEQKAAQMEALKKEMEGLYGYYAEMMKKK 60

Query: 58  R---LTIDLSECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGLAAVKSA 114
               L  ++S     +NGMV  LMEESEL L+KLVE I+ KL  N +  +   +A VKSA
Sbjct: 61  GGFGLDWEISGNENMVNGMVGLLMEESELALSKLVEVIYEKLS-NFNSNMIATVALVKSA 119

Query: 115 VLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFRKKIHER 174
           VLFVGQRVMYGV N D D+LED    SLWCWETRD+KLLPKSVRG ++IRR  RKKIHER
Sbjct: 120 VLFVGQRVMYGVPNVDADVLEDQTPDSLWCWETRDLKLLPKSVRGEIKIRRICRKKIHER 179

Query: 175 ITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDA 234
           I+AVSAM+ ALQKSESD S   DLMKAS+KL KVL EA IR+LVD++L+KNGAE+ +K+A
Sbjct: 180 ISAVSAMLAALQKSESDQSHKFDLMKASEKLSKVLQEADIRLLVDTLLQKNGAELADKEA 239

Query: 235 KREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEAD 294
           KRE+K+LIKQLEKNKREVEKEK+RMD E  KEK  +E+E KRLQEE E+DE+RRE+EE++
Sbjct: 240 KREQKLLIKQLEKNKREVEKEKRRMDLELLKEKRQTEKEHKRLQEETEKDEKRREREESE 299

Query: 295 IRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRSKILTSCQNDESSPR 354
            R+QIRKQQEEA+KEQR +E+EEAE+K+K A++KQAS+MERFLKRSK  + C NDE+S +
Sbjct: 300 TRRQIRKQQEEAEKEQRRKEREEAELKRKNAIKKQASIMERFLKRSKSNSPCPNDETSTK 359

Query: 355 AITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHW 414
           A TS  +SK   ++PEAVT  +D TLSSND+I ID+I + HLSSW   G  +RSNR QHW
Sbjct: 360 ATTSDSVSKQRLKIPEAVTLAMDFTLSSNDDIGIDNIWKFHLSSWCHMGRSIRSNRKQHW 419

Query: 415 GIRRKPKTELFKELKLT-NRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKC 473
            IR+KPKTELFKELKLT NR L HDD+ S+E+     E Q+ DD+SC+ + +SS A  K 
Sbjct: 420 SIRQKPKTELFKELKLTGNRDLAHDDESSVEKLVSGWE-QSSDDRSCVMNLESSDA-RKI 477

Query: 474 KRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLS 533
           +R KQLLQFDKSHRPAFYGIWPKKSH+VGPRHP  K+PDLDYD+DSDEEWEEE+PGESLS
Sbjct: 478 QR-KQLLQFDKSHRPAFYGIWPKKSHVVGPRHPFRKEPDLDYDVDSDEEWEEEDPGESLS 536

Query: 534 DCEKDGD----EEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPS 589
           DC+KD +    EEGC K DDEDESEDGFFVPDGYLSE+EGV+VDR+E DLS ++ + +PS
Sbjct: 537 DCDKDDEEQSLEEGCLK-DDEDESEDGFFVPDGYLSENEGVEVDRLETDLSVDEARGTPS 595

Query: 590 YKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQ 649
            KQELE++E   L++ +KYL++LTE AL+KNQPLIILNLMHEK PL  A+DL+GT   E+
Sbjct: 596 CKQELENEEFRTLLQWQKYLNNLTEIALRKNQPLIILNLMHEKDPLSAAKDLTGTFKSEK 655

Query: 650 KCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLIS------ESDLPAIVSV 703
            CL+ALS+R  PG L VEI+V  M  E++  CLS  K S T IS      ESD+P +VS 
Sbjct: 656 MCLEALSMRMNPGGLPVEISVVDMLAEDQDACLSIVKASNTHISAVTTIQESDMPIVVSA 715

Query: 704 IQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELG--YSP 761
           IQS S ++NK++E LQQKFP++S++Q+RNKVREISD  F +NRWQVK+EIL ++G   SP
Sbjct: 716 IQSGSHSINKVVELLQQKFPTVSKSQIRNKVREISD--FVDNRWQVKKEILDKVGISISP 773

Query: 762 DKNGGRAKGIATFFSKRCLPPDGKSLNPNEASPLSSLKPGSAVHGQHGCT 811
           +K GGR + I+ FFSKRCLPP  +S+NP   SP  S KPGSAV GQ  CT
Sbjct: 774 EKGGGRMQNISKFFSKRCLPPAAESINPEATSPEPSRKPGSAVQGQQACT 823

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|317106648|dbj|BAJ53153.1| JHL23J11.8 [Jatropha curcas] Back     alignment and taxonomy information
>gi|147836503|emb|CAN77600.1| hypothetical protein VITISV_008038 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442241|ref|XP_004138890.1| PREDICTED: chromatin assembly factor 1 subunit FAS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449477758|ref|XP_004155114.1| PREDICTED: LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit FAS1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356566959|ref|XP_003551692.1| PREDICTED: uncharacterized protein LOC100802884 [Glycine max] Back     alignment and taxonomy information
>gi|356530013|ref|XP_003533580.1| PREDICTED: uncharacterized protein LOC100811035 [Glycine max] Back     alignment and taxonomy information
>gi|15220980|ref|NP_176725.1| chromatin assembly factor-1 (FASCIATA1) [Arabidopsis thaliana] gi|75213311|sp|Q9SXY0.1|FAS1_ARATH RecName: Full=Chromatin assembly factor 1 subunit FAS1; Short=CAF-1 subunit FAS1; AltName: Full=CAF-1 p150 homolog; AltName: Full=Protein FASCIATA 1 gi|4887626|dbj|BAA77811.1| FAS1 [Arabidopsis thaliana] gi|22022526|gb|AAM83221.1| At1g65470/F5I14_33 [Arabidopsis thaliana] gi|332196258|gb|AEE34379.1| chromatin assembly factor-1 (FASCIATA1) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334183657|ref|NP_001185320.1| chromatin assembly factor-1 (FASCIATA1) [Arabidopsis thaliana] gi|332196259|gb|AEE34380.1| chromatin assembly factor-1 (FASCIATA1) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841057|ref|XP_002888410.1| hypothetical protein ARALYDRAFT_894101 [Arabidopsis lyrata subsp. lyrata] gi|297334251|gb|EFH64669.1| hypothetical protein ARALYDRAFT_894101 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query815
TAIR|locus:2034183815 FAS1 "FASCIATA 1" [Arabidopsis 0.947 0.947 0.478 1.3e-178
UNIPROTKB|B2ZX90940 FSM "Chromatin assembly factor 0.680 0.590 0.381 3.6e-135
UNIPROTKB|E1BYD9934 CHAF1A "Chromatin assembly fac 0.204 0.178 0.301 2e-11
UNIPROTKB|F1P5R3937 CHAF1A "Chromatin assembly fac 0.204 0.178 0.301 2e-11
UNIPROTKB|Q5R1T0937 CHAF1A "Chromatin assembly fac 0.204 0.178 0.295 2.5e-11
UNIPROTKB|A6QLA6964 CHAF1A "Chromatin assembly fac 0.110 0.093 0.419 1e-09
MGI|MGI:1351331911 Chaf1a "chromatin assembly fac 0.110 0.098 0.440 1e-09
RGD|1590865907 Chaf1a "chromatin assembly fac 0.110 0.099 0.419 4.5e-09
UNIPROTKB|A0JMT0885 chaf1a-b "Chromatin assembly f 0.138 0.127 0.338 5.8e-09
UNIPROTKB|F1S7L7963 CHAF1A "Uncharacterized protei 0.110 0.093 0.408 1.5e-08
TAIR|locus:2034183 FAS1 "FASCIATA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1734 (615.5 bits), Expect = 1.3e-178, P = 1.3e-178
 Identities = 388/811 (47%), Positives = 509/811 (62%)

Query:     1 MADTTTMSNVEDR-----PSKTLKRKRAWPA---LTGEDKESRIRRFNEEVKWLFGYYKE 52
             M + +T++  E+R     P K  KRKR   A   LT E+KES+I   N E+K LF Y++E
Sbjct:     1 MDEVSTVNENENRKTMIEPKKLNKRKREPTAIENLTSEEKESQISSLNLEMKGLFDYFRE 60

Query:    53 MITNQRLTIDL----SECAGSLNGMVAALMEESELPLTKLVEEIHVKLKENGSEKLGVGL 108
             ++   + T DL    SEC+ SLN MVA LMEE  LPL+KLV+EI++KLKE  +E   V +
Sbjct:    61 VMDKSKRT-DLFSGFSECS-SLNSMVALLMEEMSLPLSKLVDEIYLKLKEK-TES--VTM 115

Query:   109 AAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRRTFR 168
              AVKSAV+ VGQRV YGV N D D+LEDD+E+ LWCWETRD+K++P SVRG L++RRT R
Sbjct:   116 VAVKSAVVSVGQRVSYGVLNVDADVLEDDSESCLWCWETRDLKIMPSSVRGVLKLRRTCR 175

Query:   169 KKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAE 228
             KKIHERITAVSAM+ ALQ+ E++  + +DL KA++KLGK+LSE  IR  +D+M++KN +E
Sbjct:   176 KKIHERITAVSAMLAALQREETEKLWRSDLSKAAEKLGKILSEVDIRSFMDNMMQKNSSE 235

Query:   229 IVEKDAKREEKILIKQLXXXXXXXXXXXXXMDCEQQKEKLHSERELKRLQXXXXXXXXXX 288
             + EKD+KREEK+L+KQL             M+ +  KEKL  E+E K LQ          
Sbjct:   236 MAEKDSKREEKLLLKQLEKNRCEAEKEKKRMERQVLKEKLQQEKEQKLLQKAIVDENNKE 295

Query:   289 XXXXXXXXXQIRKQQEEADKEQRHRXXXXXXXXXXXXXXXXXSMMERFLKRSKILTSCQN 348
                      +I+KQQ+E++KEQ+ R                 S+MERFLK+SK  +  Q 
Sbjct:   296 KEETESRK-RIKKQQDESEKEQKRREKEQAELKKQLQVQKQASIMERFLKKSKDSSLTQP 354

Query:   349 DESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRS 408
                S       L     E     V + +D+  S+  E  +DDIRR H +SW + GH + S
Sbjct:   355 KLPSSEVTAQELSCTKHENEIGKVVQAIDNAFSTTCEATVDDIRREHFASWRQLGHLLSS 414

Query:   409 NRNQHWGIRRKPKTELFKELKL-TNRGLGHDDDLSMERSEDRCEAQTVXXXXXXXXXXXX 467
             ++ +HWG+RR+PK+ELF +LKL TN G+  D + +ME+  D CE                
Sbjct:   415 SK-KHWGMRRQPKSELFPKLKLSTNSGVTSDGEPNMEKQGDGCEENNFDGRQCKPSSSNR 473

Query:   468 XXXXXXXRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKDPDLXXXXXXXXXXXXXX 527
                    R KQLLQFDKS RP FYGIWP +S +V PR PL KDP+L              
Sbjct:   474 KKSR---RVKQLLQFDKSCRPGFYGIWPSQSQVVKPRRPLQKDPELDYEVDSDEEWEEEE 530

Query:   528 XXXXXXXXXKDGDE---EGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDT 584
                      KD DE   EGCSKADDED+SED F VPDGYLSEDEGVQVDRM+ID S +D 
Sbjct:   531 AGESLSDCEKDEDESLEEGCSKADDEDDSEDDFMVPDGYLSEDEGVQVDRMDIDPSEQDA 590

Query:   585 KSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGT 644
              ++ S KQ+ ES E CAL++Q+K+L +LT+ AL+K QPLII NL HEKV LL A+DL GT
Sbjct:   591 NTTSS-KQDQESPEFCALLQQQKHLQNLTDHALKKTQPLIICNLTHEKVSLLAAKDLEGT 649

Query:   645 SNMEQKCLQALSIRPFPGDLHVEITV-DIMDDENEKD---CLSNGKGSTT---LISESDL 697
               +EQ CL+AL +R FP    +EI++ DI D++ E     C  +   S +   +I +SDL
Sbjct:   650 QKVEQICLRALMVRQFPWSSLIEISINDIQDEDQEASKFSCSQSTPPSNSKAKIIPDSDL 709

Query:   698 PAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIEL 757
               +VS IQSCS  +N+++E LQQKFP + + +LR KVREISDF   ++RWQVK+E+L +L
Sbjct:   710 LTVVSTIQSCSQGINRVVETLQQKFPDVPKTKLRQKVREISDFE--DSRWQVKKEVLTKL 767

Query:   758 GYSP--DKNGGRA-KGIATFFSKRCLPPDGK 785
             G SP  DK G R  K I+TFFSKRCLPP  K
Sbjct:   768 GLSPSPDKGGKRLPKTISTFFSKRCLPPSTK 798
GO:0005634 "nucleus" evidence=ISM
GO:0006334 "nucleosome assembly" evidence=IDA
GO:0009934 "regulation of meristem structural organization" evidence=IMP
GO:0033186 "CAF-1 complex" evidence=IPI
GO:0042393 "histone binding" evidence=ISS
GO:0031507 "heterochromatin assembly" evidence=RCA;IMP
GO:0006310 "DNA recombination" evidence=IEP;IMP
GO:0006325 "chromatin organization" evidence=IDA
GO:0008283 "cell proliferation" evidence=IMP
GO:0010026 "trichome differentiation" evidence=IMP
GO:0048366 "leaf development" evidence=IMP
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA;IMP
GO:0009555 "pollen development" evidence=IGI;RCA
GO:0045787 "positive regulation of cell cycle" evidence=IGI;RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
UNIPROTKB|B2ZX90 FSM "Chromatin assembly factor 1 subunit FSM" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYD9 CHAF1A "Chromatin assembly factor 1 subunit A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5R3 CHAF1A "Chromatin assembly factor 1 subunit A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R1T0 CHAF1A "Chromatin assembly factor 1 subunit A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLA6 CHAF1A "Chromatin assembly factor 1 subunit A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1351331 Chaf1a "chromatin assembly factor 1, subunit A (p150)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1590865 Chaf1a "chromatin assembly factor 1, subunit A (p150)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A0JMT0 chaf1a-b "Chromatin assembly factor 1 subunit A-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1S7L7 CHAF1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SXY0FAS1_ARATHNo assigned EC number0.54440.94840.9484yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00012871001
SubName- Full=Chromosome undetermined scaffold_409, whole genome shotgun sequence; (831 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034835001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (445 aa)
      • 0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
pfam1225376 pfam12253, CAF1A, Chromatin assembly factor 1 subu 4e-25
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 2e-07
TIGR02794346 TIGR02794, tolA_full, TolA protein 8e-07
PLN02372455 PLN02372, PLN02372, violaxanthin de-epoxidase 3e-06
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 2e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 8e-05
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 1e-04
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 1e-04
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 1e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 1e-04
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 2e-04
smart01071154 smart01071, CDC37_N, Cdc37 N terminal kinase bindi 2e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 6e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 6e-04
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 6e-04
PRK12585197 PRK12585, PRK12585, putative monovalent cation/H+ 7e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 8e-04
PRK05035695 PRK05035, PRK05035, electron transport complex pro 8e-04
pfam09731493 pfam09731, Mitofilin, Mitochondrial inner membrane 8e-04
pfam09756189 pfam09756, DDRGK, DDRGK domain 9e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.001
TIGR02794346 TIGR02794, tolA_full, TolA protein 0.001
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
COG3064387 COG3064, TolA, Membrane protein involved in colici 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.002
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.003
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.003
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.003
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.003
pfam05266190 pfam05266, DUF724, Protein of unknown function (DU 0.003
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.004
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
pfam02841297 pfam02841, GBP_C, Guanylate-binding protein, C-ter 0.004
pfam02029431 pfam02029, Caldesmon, Caldesmon 0.004
TIGR01554384 TIGR01554, major_cap_HK97, phage major capsid prot 0.004
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A Back     alignment and domain information 
 Score = 98.8 bits (247), Expect = 4e-25
 Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 7/82 (8%)

Query: 477 KQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMKD-PDLDYDIDSDEEWEEEEPGESLSDC 535
            +LLQF ++ RP +YG W K S ++ PR+PL +D P LDYD DSD EWEEEE GE L + 
Sbjct: 1   MKLLQFYENVRPPYYGTWTKPSSVILPRNPLSQDLPGLDYDYDSDAEWEEEEEGEDL-ES 59

Query: 536 EKDGDEEGCSKADDEDESEDGF 557
           E + DEE     +D+D+  DGF
Sbjct: 60  EDEEDEE-----EDDDDDMDGF 76

The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A. The A domain is uniquely required for the progression of S phase in mouse cells, independent of its ability to promote histone deposition but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints. Length = 76
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein Back     alignment and domain information
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724) Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain Back     alignment and domain information
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon Back     alignment and domain information
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 815
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 100.0
PF1225377 CAF1A: Chromatin assembly factor 1 subunit A; Inte 99.94
KOG4363270 consensus Putative growth response protein [Signal 99.1
PF11600216 CAF-1_p150: Chromatin assembly factor 1 complex p1 98.66
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 98.3
PF15539292 CAF1-p150_C2: CAF1 complex subunit p150, region bi 98.15
PF11600216 CAF-1_p150: Chromatin assembly factor 1 complex p1 97.24
PTZ00266 1021 NIMA-related protein kinase; Provisional 97.06
PTZ002661021 NIMA-related protein kinase; Provisional 96.12
PTZ00121 2084 MAEBL; Provisional 94.99
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 94.41
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 94.34
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 94.33
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 93.99
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 93.88
KOG3054299 consensus Uncharacterized conserved protein [Funct 93.55
KOG2891445 consensus Surface glycoprotein [General function p 92.67
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 92.53
PF13904264 DUF4207: Domain of unknown function (DUF4207) 91.86
COG3064387 TolA Membrane protein involved in colicin uptake [ 91.8
KOG1144 1064 consensus Translation initiation factor 5B (eIF-5B 91.78
PRK09510387 tolA cell envelope integrity inner membrane protei 91.2
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 90.87
KOG1144 1064 consensus Translation initiation factor 5B (eIF-5B 90.21
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 88.0
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 87.87
PF15236157 CCDC66: Coiled-coil domain-containing protein 66 87.52
TIGR02794346 tolA_full TolA protein. TolA couples the inner mem 85.26
KOG2891445 consensus Surface glycoprotein [General function p 84.48
PRK00247429 putative inner membrane protein translocase compon 84.32
KOG3054299 consensus Uncharacterized conserved protein [Funct 82.83
COG4942420 Membrane-bound metallopeptidase [Cell division and 82.83
PF10446 458 DUF2457: Protein of unknown function (DUF2457); In 82.35
PF07946321 DUF1682: Protein of unknown function (DUF1682); In 80.55
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=1e-96  Score=820.59  Aligned_cols=767  Identities=43%  Similarity=0.654  Sum_probs=638.1

Q ss_pred             CcchhhhhhccC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhccccc----cCcccccCchhHHHHHHHhccCCcH
Q 003501           13 RPSKTLKRKRAW---PALTGEDKESRIRRFNEEVKWLFGYYKEMITNQRLT----IDLSECAGSLNGMVAALMEESELPL   85 (815)
Q Consensus        13 ~~~k~~~~~~~~---~~~~~~~k~~~~~~~~~e~~~l~~~~re~~~~~~~~----~~~~~~~~~~~~~Va~L~eeS~lpL   85 (815)
                      ++++.-+|||..   .++++..++.+++.++.+++|||.||++++ ..--.    ..+.+| .+.|.+++.||+++++|+
T Consensus        18 ~k~~ld~~kre~~~~~~~~S~~~e~~t~~~N~~~d~~~~d~~~~~-~~~~~~~~~~~~~~~-~~~n~~~~L~ae~~~~~~   95 (811)
T KOG4364|consen   18 EKKKLDKRKREPTAIENLTSEEKESQTSSLNLEMDGLFDDFREVM-DKSKRTDLFSGFSEC-SSLNSMVALLAEEMSLPL   95 (811)
T ss_pred             ccCccchhhhchhhhhhccccccccchhhhhcccchhHHHHHHHh-ccccccccccCceec-cccccccchhhhhccccc
Confidence            456667777776   789999999999999999999999999998 32222    144488 999999999999999999


Q ss_pred             HHHHHHHHHHhcccCccccCccHHHHHHHHHHHHhhhhcCCCCCCCCcccCcCCCceEEeeeCCCcccchhhhhHHHHHH
Q 003501           86 TKLVEEIHVKLKENGSEKLGVGLAAVKSAVLFVGQRVMYGVSNADTDILEDDAEASLWCWETRDVKLLPKSVRGSLRIRR  165 (815)
Q Consensus        86 s~L~~~i~~~L~~~~~~~~~l~~a~V~s~I~~va~R~nYG~~~~~~d~Led~~~~~lWrWE~~D~k~LP~~~r~~~~~Rr  165 (815)
                      +-|++.+|..|++.   ..||+...+.+++..+++|..||+.++|++++++....|+||||++++..+|.+.+..+..++
T Consensus        96 ~p~~~~s~~~~K~k---~Egv~~~~~~~~~~s~~~~~~s~~e~~d~p~~~~~~eq~~~~~et~~~~~~~~s~~vVl~~~~  172 (811)
T KOG4364|consen   96 SPLVDESYLKLKEK---TEGVTMVAVKSAVVSVGQRVSSGVENVDAPVLEDDSEQCLWCWETRDLKIMPSSVRVVLKLRR  172 (811)
T ss_pred             CCccccccccCccc---ccccchhhcccccccccccccccccccCCcccCchhhhhchhhcccCcccCCCcchhHHhhhh
Confidence            99999999999996   679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCCchhhhHHHHHHHHhhhhhhhHHHHHHHHhhhhccChhhhhHHhhHHHHHHHHHH
Q 003501          166 TFRKKIHERITAVSAMITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQL  245 (815)
Q Consensus       166 ~~R~ki~~r~~Av~~~L~~l~~~~~~~~~~~~~~k~~~kl~k~l~~~~~r~~~e~~~qk~~~~~~~k~a~~~e~~~~k~~  245 (815)
                      ++|..||.++.|+.+|+.+++.++....|..|+-++..++++.++..+|++....+.+++...+..+.-+..++++.||+
T Consensus       173 ~~rdp~~k~vkav~q~p~a~~~sevl~s~~~~~sSs~~~~~~~sdts~~~~~s~q~p~k~~s~~~pk~tk~p~~l~~KQ~  252 (811)
T KOG4364|consen  173 TCRDPIHKRVKAVSQMPAALQRSEVLKSWRSDLSSSAEKLGKISDTSDIRSFSDQMPQKNSSEMAPKDTKRPEKLLLKQL  252 (811)
T ss_pred             cccchhhhcccccccCcccccHHHHHhhccccchhhHhhhhccCCccccCcccccccccCCCcCCCCCCCcchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003501          246 EKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLA  325 (815)
Q Consensus       246 ek~~k~~eke~~~~~kE~~~e~~~~ek~~k~~e~~~~k~ek~~ekee~e~~k~~~k~~eeaekeqkr~ekeea~~k~~~~  325 (815)
                      .|+..+.+|++.+|++..+.|+ +.+...+++++++.++++.+++++++.+|.++|+|++-|+|+|||+.|+++++|++.
T Consensus       253 rk~meEreK~R~erEr~~leeK-rlk~~~~~eek~~~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqee  331 (811)
T KOG4364|consen  253 RKNMEEREKERKERERQVLEEK-RLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEE  331 (811)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            9998777777766666555444 445555666777889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccCCcccCCCCCCCcccccccccccCCCCchhhhhhcccccccCCCCCCchhhhhhhcchhhhhhhh
Q 003501          326 LQKQASMMERFLKRSKILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHF  405 (815)
Q Consensus       326 ~~kqa~~m~rFfkk~k~~~~~~~~~ss~~~~~~~~~~~~~~~~~e~~~~~mD~~L~s~~~~~le~l~r~~~~~w~~l~~~  405 (815)
                      .+|++++|+||...............+-+-.+....+......+..+-..+|..++..+..+...++..+|..|+.+..+
T Consensus       332 k~KR~k~~Erkee~~rk~deerkK~e~ke~ea~E~rkkr~~aei~Kffqk~~~k~~~~~~a~~s~~~f~pFeikd~M~la  411 (811)
T KOG4364|consen  332 KQKRAKIMERKEEKSRKSDEERKKLESKEVEAQELRKKRHEAEIGKFFQKIDNKFSTTCEATVSDIRFEPFEIKDQMGLA  411 (811)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhcccccccCCcccccccccccccchhhcccccc
Confidence            99999999999988776544333323322222223333344445666678888888888889999999999999998755


Q ss_pred             hhcccccccccccCchhhhhhhcccc-CCCCCCCCCcchhhhhhhhcccccCCccccccCCCCchhhhccc-cceEEeec
Q 003501          406 VRSNRNQHWGIRRKPKTELFKELKLT-NRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKR-WKQLLQFD  483 (815)
Q Consensus       406 ~r~~r~~~wg~r~~Pk~E~fk~Lkl~-~~~~~~d~~~s~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~K~l~F~  483 (815)
                      ... +..+||.++-|..+||.-++|+ .++...+.++.++.-.+++..-.+.+..|....-   ...+..+ ++|||||+
T Consensus       412 pi~-s~~~~~~~rsqld~Lf~r~pls~~~dvk~q~e~~~e~~~d~~~~adf~~sa~kpve~---e~~k~r~mKaKlLqF~  487 (811)
T KOG4364|consen  412 PIS-SKKHWGMRRSQLDELFPRLPLSTNSDVKSQGEPNMEKQGDGCEEADFDGSACKPVES---ERKKSRRMKAKLLQFD  487 (811)
T ss_pred             cee-hhccchhhhhhhhhhcccCCCcccccccccCCccccccCCcceecccccccceeecc---CCcccchhHHHHhhhc
Confidence            444 4679999999999999999998 7777777777776665666655666655555432   1122222 68999999


Q ss_pred             CCCCCCceeeecCCCcccCCCCCCCCCCCCCCCCCChhhhhhccCCCCCCCCcCCCCcccCCCCCCCcccCCCccccCCC
Q 003501          484 KSHRPAFYGIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGY  563 (815)
Q Consensus       484 en~RPpy~GT~~k~s~~v~~r~Pf~kd~~lDYdyDSd~EWeeee~GEdl~d~e~~~e~eed~~~~ded~~~d~f~vpdg~  563 (815)
                      +|+||+|||||+++|.+|.||+||++++.|||++|||+|||||++||+|+++|+|++++.+   +|.+|++|||||||||
T Consensus       488 ~NrRP~YyGTWrKKS~~VsarrPlAq~~llDYEVdSDeEWEEEepGESlS~sEddedd~~e---Ed~edEdDgffVPhgy  564 (811)
T KOG4364|consen  488 KNRRPGYYGTWRKKSQVVSARRPLAQDPLLDYEVDSDEEWEEEEPGESLSDSEDDEDDSLE---EDCEDEDDGFFVPHGY  564 (811)
T ss_pred             cccCCcccccccccccccccCCcccccccccccccCcccccccCCCccccccccccccccc---cccccccCCeecCCcc
Confidence            9999999999999999999999999999999999999999999999999998876443221   3434678999999999


Q ss_pred             CCCCCCccccchhccccccccCCCCCchhhhhhHHHHHHHH-hhHHhhHhHHHHhhcCCceEeeccCcCCcccccccccc
Q 003501          564 LSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVR-QRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLS  642 (815)
Q Consensus       564 Lsd~E~~~~~~~~~~~~~e~~~~s~~~~~~~e~ee~~~l~~-~qk~l~~lt~~al~~~~PlvI~~l~~~k~~l~~a~d~~  642 (815)
                      ||+|||++.+++++|+..-. ..+-.......+..|+.+.. +++.+..++.|++....+++|.+|.+.+.++..+.+.+
T Consensus       565 LSedEgv~d~~~d~D~~e~d-K~tek~k~r~~gp~f~dln~~k~~~~~A~~ah~a~d~ak~~~~~la~ep~~lpa~~dqt  643 (811)
T KOG4364|consen  565 LSEDEGVQDDRMDIDPSEQD-KNTEKSKQRQEGPEFCDLNQVKQKHLQALTAHAAKDTAKLIICNLAHEPVSLPAAKDQT  643 (811)
T ss_pred             ccccccccccccCcchhhhh-hhhhhhhhhhcCchHhhhcchhHHHHHHHHHHHhhhhHHHhhhhhccCCCCCchhhccC
Confidence            99999999888877754221 22334455667778999865 67788889999999999999999999999999999999


Q ss_pred             CCchhhhhhhhhccccCCCCCCccccccccCCcccc-----ccccC--CCCCCCCCCCcCcHHHHHHHHhcCCCcHHHHH
Q 003501          643 GTSNMEQKCLQALSIRPFPGDLHVEITVDIMDDENE-----KDCLS--NGKGSTTLISESDLPAIVSVIQSCSTNMNKIL  715 (815)
Q Consensus       643 ~t~k~e~~~lqaLs~~~~P~~p~i~~~~~~~~~~~~-----~~~~S--~~Kk~kt~Ipd~dLp~Lv~~Ihgs~~Si~~LV  715 (815)
                      ++.+++..|..+|-++.+|.......+......+.+     ..+.|  ++...+..||+.+++....-|..|+.+++.+|
T Consensus       644 p~qpve~~~d~alm~ql~pl~hgn~ns~~~ii~E~qE~~k~~~~~sn~t~~p~~~~~~~~~~~t~s~~~~~~S~~~~~~~  723 (811)
T KOG4364|consen  644 PTQPVEQICDRALMVQLFPLSHGNENSINDIIDEDQEASKFSCSQSNPTSNPKAKIIPDSDLLTVSSTIQSCSQGINRVV  723 (811)
T ss_pred             CCcchHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhhhccCCCCCCCCccccccccccchhhhhccccHHHHHH
Confidence            999999999999988888876543322221111111     11112  22223445689999999999999999999999


Q ss_pred             HHHHHhCCCCcHHHHHHHHHHhhhccCCCCceEEcHHHHHHcCC--CCCCCCC-CccchhhhhccccCCCCCCCCCCCCC
Q 003501          716 EALQQKFPSISRAQLRNKVREISDFNFAENRWQVKREILIELGY--SPDKNGG-RAKGIATFFSKRCLPPDGKSLNPNEA  792 (815)
Q Consensus       716 E~lqk~fP~vSKa~IKnkIkEiA~r~~~~krW~VK~EvL~~~gL--spe~~~~-~~~~i~~~~s~~c~~~~~~~~~~~~~  792 (815)
                      +.++..||.++|..+--+|++|..|  -+.+|+|+...+-.+||  ||.++++ .|++|.+||+.|||||.+...+..++
T Consensus       724 ~t~~~k~~~~Pk~rlcw~V~~l~~F--q~~~lqv~~qw~y~l~~~~sp~~d~~~~p~t~pt~~~p~~lp~s~~~~~~v~~  801 (811)
T KOG4364|consen  724 ETLQQKFPDVPKTRLCWKVRELSDF--QDSRLQVKKQWLYKLGLSPSPDKDGKRLPKTIPTFFSPRCLPPSTKPQPAVED  801 (811)
T ss_pred             HhhhhhcCCCCcchhHHHHHHHHhc--ccccccccceeeeeecCCCCCCCccccCCCCCCcccCcccCCCcCCCCcchhh
Confidence            9999999999999999999999999  99999999999999999  6888877 59999999999999998666655554


Q ss_pred             CCC
Q 003501          793 SPL  795 (815)
Q Consensus       793 sp~  795 (815)
                      .|.
T Consensus       802 ~~~  804 (811)
T KOG4364|consen  802 AAE  804 (811)
T ss_pred             HHH
Confidence            443

>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A [] Back     alignment and domain information
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms] Back     alignment and domain information
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term Back     alignment and domain information
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [] Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>PF13904 DUF4207: Domain of unknown function (DUF4207) Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF15236 CCDC66: Coiled-coil domain-containing protein 66 Back     alignment and domain information
>TIGR02794 tolA_full TolA protein Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query815
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 5e-09
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 7e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 8e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 3e-05
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 4e-05
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.9 bits (152), Expect = 3e-10
 Identities = 87/655 (13%), Positives = 180/655 (27%), Gaps = 187/655 (28%)

Query: 192 PSFINDL--MKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLE-KN 248
            +F+++            +LS+      +D ++         KDA      L   L  K 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEE----IDHIIM-------SKDAVSGTLRLFWTLLSKQ 75

Query: 249 KREVEK---EKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEE 305
           +  V+K   E  R++ +     + +E          +R      +   + R ++    + 
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTE----------QRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 306 ADKEQRHREKEEAEMKKKL-ALQKQASM----MERFLKRSKILTSCQNDE---------- 350
             K    R +   ++++ L  L+   ++    +    K    L  C + +          
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 351 -------SSPRAITSVL------LSKNSEQLPEAVTKLVDSTLSSNDEIN---------- 387
                  +SP  +  +L      +  N     +  + +     S   E+           
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 388 ----IDDIRRSHLSSWHRFGHFVR---SNRNQHWGIRRKPKTELFKELKLTNRGLGHDDD 440
               + +++  +  +W+ F    +   + R +         T     L   +  L  D+ 
Sbjct: 246 CLLVLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 441 LS-------MERSEDRCEAQTVDDK--SCITSSDSSSAITKCKRWKQLLQFDK------- 484
            S           +   E  T + +  S I  S      T    WK  +  DK       
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKH-VNCDKLTTIIES 361

Query: 485 --------SHRPAFY--GIWPKKSHIVGPRHPLMKDPDLDYDIDSDEEW---EEEEPGES 531
                    +R  F    ++P  +HI  P   L     +         W    + +    
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSL---I---------WFDVIKSDVMVV 407

Query: 532 LSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYK 591
           ++   K           ++   E    +P  YL                  + K     +
Sbjct: 408 VNKLHK-------YSLVEKQPKESTISIPSIYL------------------ELKVKLENE 442

Query: 592 QELESKESCALVRQRKYLSSLTEQALQKNQP--LIILNLMHEKVPLLMAEDLSGTSN--- 646
             L       +V       +     L           ++ H    +   E ++       
Sbjct: 443 YALHRS----IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 647 ----MEQKCLQALSIRPFPGDLHVEITVDIMDDENEKDCLSNGKGSTTLISESD------ 696
               +EQK     +     G     I   +   +  K            I ++D      
Sbjct: 499 DFRFLEQKIRHDSTAWNASGS----ILNTLQQLKFYKP----------YICDNDPKYERL 544

Query: 697 LPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFAENRWQVKR 751
           + AI+  +     N+      +  K+  + R  L  +   I    F E   QV+R
Sbjct: 545 VNAILDFLPKIEENL------ICSKYTDLLRIALMAEDEAI----FEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 815
d1sa0e_138 a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus 2e-05
d1sa0e_138 a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus 4e-04
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 6e-05
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 3e-04
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 7e-04
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.001
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 Back     information, alignment and structure

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 42/92 (45%)

Query: 228 EIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERR 287
           EI +K    EE+   ++ E  K   EK +   +  Q+  + ++       ++ A++ E  
Sbjct: 46  EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESN 105

Query: 288 REKEEADIRKQIRKQQEEADKEQRHREKEEAE 319
           +E  EA +   + + QE+    +  R+ +E +
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00