Citrus Sinensis ID: 003575

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810
MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVVCSLKNQEECMACGS
cEEEcccccEEEccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccEEEccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHccccccEEEcEEEccccccccccccccccccHHHHHHcHHHHHcccccccccEEEEEEcccHHHHHHHHHcHHcccccccccccccccccccHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHccccEEcccccccccccccccccccccccHHHccccccccEEEEEEEccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHcccccccccccccEEEEEcccccEEEEccccHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHccccccccccHHHHHHHHHHHHHccccccccEEcccccccccHHcccHHHHHHHHHcccccHHHHHHHHHHcccccccccccccc
cEEEEcccccccEEHHHHHHHHHHHHccccHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccEEEEcccccccccccHHHHHHHHEEEcccEEEccccEEEEEEEEccHccHHHHHHHHHHHHHHHHHccccHHHcccccccccccHEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEEEccccEEEcccccccccEEEEEEEccccEEEcccccccccEEEEEEccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHcHHHHHHHHHHHHHccccccEHHHHHHHHHHHHHHHHccccEEEEEcHHccccccccccEEEcccccEEEEEcccccHEEHHHHHHHHcHHHHcccccccccccccEEEccccccccEcHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccEEEEHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccHHHHHHHHHHccccccEEEcccccccHHHHHccccccccccccEEEEEEEccEEEEEcHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHcccEEEccccEEEEEccccccHHHHHHHHHHHHccccccEEEcccHHHcHHEEEEcHHHHHHccHHHccccHHHHHHHcEccccccHHcccccc
myvikrdgrkepvrfDKITARLKKLSyglskehcdpVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYnkrsgkkaslVADDVYEIIMKNAacldgaiiydrdfdfdyfgfKTLERSYLLKMDsrvverpqhMLMRVSvgihkddtdsaLKTYHLMSQHwfthatptlfnagtpqpqlssCFLLCMKDDSIEGIYDTLKKCAIISksaggiglsihnirasgsyihgtngssngivpmLQVFNDTaryvdqgggkrkgAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMervrddgkwslfcpsdasgladswgIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQietgtpymlfkdscnrksnqqnlgtikssnlcteivefsspeetaVCNLASialpryvrekgvpvqsnvsklvgsrdsknrlfDFERLAEVTKIITENLNKiidvnhypiettrrsnlrhrpigigiqgLADTFillglpfespeaqqLNKDIFETIYYHALKASAelavkdgpyetyfgspmskgilqvdmwnitpsdrwdwsSLREMISKngvrnsllvapmptastsqilgnnecfepytsniytrrVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYengsvskisEIPEELKAIYKTVWEIKQKTLVDMAadrgcyidqsqslnihmeqpdhgkltslHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTsvlnnekanradndvEANLAQVVCSLKNqeecmacgs
myvikrdgrkepvrfdkITARLKKLsyglskehcdPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQqnlgtikssnLCTEIVEFSSPEETAVCNLASIALpryvrekgvpvqsnvsklvgsrdsknrlfdFERLAEVTKIItenlnkiidvnhypiettrrsnlrhrpIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIyengsvskiseiPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEkanradndveANLAQVVCSLknqeecmacgs
MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIydrdfdfdyfgfKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVVCSLKNQEECMACGS
*************RFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCN*******LGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVG****KNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN*********VEANLAQVVCSL***********
MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTV**************************SLKNQEECMACG*
MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVVCSLKNQ********
MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGV******SKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK**************VVCSLKNQ**C**C**
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MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKANRADNDVEANLAQVVCSLKNQEECMACGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query810 2.2.26 [Sep-21-2011]
Q9SJ20816 Ribonucleoside-diphosphat yes no 0.998 0.991 0.788 0.0
P07742792 Ribonucleoside-diphosphat yes no 0.976 0.998 0.652 0.0
Q9UW15 929 Ribonucleoside-diphosphat N/A no 0.935 0.815 0.654 0.0
P23921792 Ribonucleoside-diphosphat yes no 0.976 0.998 0.646 0.0
Q5R919792 Ribonucleoside-diphosphat yes no 0.976 0.998 0.643 0.0
P79732794 Ribonucleoside-diphosphat yes no 0.976 0.996 0.635 0.0
P21524888 Ribonucleoside-diphosphat yes no 0.950 0.867 0.628 0.0
P21672869 Ribonucleoside-diphosphat no no 0.938 0.874 0.637 0.0
P48591812 Ribonucleoside-diphosphat yes no 0.976 0.974 0.613 0.0
Q03604788 Ribonucleoside-diphosphat yes no 0.960 0.987 0.625 0.0
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1391 bits (3601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 644/817 (78%), Positives = 736/817 (90%), Gaps = 8/817 (0%)

Query: 1   MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
           MYV+KRDGR+E V FDKITARLKKLSYGLS +HCDPVLVAQKVCAGVYKGVTT+QLDELA
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 61  AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
           AETAAAMT NHPDYA LA R+AVSNLHK TK SFSETIKDM+ + N RSG K+ L+ADDV
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120

Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
           +EIIM+NAA LD  IIYDRDF++DYFGFKTLERSYLLK+   VVERPQHMLMRV+VGIHK
Sbjct: 121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHK 180

Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
           DD DS ++TYHLMSQ WFTHA+PTLFNAGTP+PQLSSCFL+CMKDDSIEGIY+TLK+CA+
Sbjct: 181 DDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240

Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
           ISKSAGGIG+S+HNIRA+GSYI GTNG+SNGIVPML+VFNDTARYVDQGGGKRKGAFA+Y
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300

Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
           LEPWHAD++EFL+LRKN GKEE RARDLFYALW+PDLFMERV+++G+WSLFCP++A GLA
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360

Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
           D WG EFE LY++YE EG+AK V+ A++LW+EIL SQ+ETGTPYMLFKDSCNRKSNQQNL
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNL 420

Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
           GTIKSSNLCTEI+E++SP ETAVCNLASIALPR+VREKGVP+ S+  KL GS DSKNR F
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYF 480

Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
           DFE+LAEVT  +T NLNKIIDVN+YP+ET + SN+RHRPIGIG+QGLAD FILLG+PF+S
Sbjct: 481 DFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540

Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
           PEAQQLNKDIFETIYYHALKAS ELA + GPYETY GSP+SKGILQ DMWN+ PSDRWDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDW 600

Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
           + LR+MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RRVLSGEF+VVNKHL
Sbjct: 601 AVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660

Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
           L DLT++GLW+  LK K+I ENGS+  ++EIP++LKAIY+TVWEIKQ+T+VDMAADRGCY
Sbjct: 661 LHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCY 720

Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
           IDQSQSLNIHM++P+  KLTSLHFY W KG+KTGMYYLR+RAAADAIKFTVDT++L  EK
Sbjct: 721 IDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAML-KEK 779

Query: 781 ANRADNDVEA-------NLAQVVCSLKNQEECMACGS 810
            + A+ D E         LAQ+VCSL N EEC+ACGS
Sbjct: 780 PSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. R1 contains the binding sites for both substrates and allosteric effectors and carries out the actual reduction of the ribonucleotide.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=2 Back     alignment and function description
>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2 Back     alignment and function description
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens GN=RRM1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii GN=RRM1 PE=2 SV=1 Back     alignment and function description
>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio GN=rrm1 PE=2 SV=1 Back     alignment and function description
>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1 SV=2 Back     alignment and function description
>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1 SV=4 Back     alignment and function description
>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila melanogaster GN=RnrL PE=1 SV=2 Back     alignment and function description
>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query810
224082486810 predicted protein [Populus trichocarpa] 1.0 1.0 0.833 0.0
255566650810 ribonucleoside-diphosphate reductase lar 1.0 1.0 0.832 0.0
40850562810 putative ribonucleotide reductase large 1.0 1.0 0.819 0.0
225438479808 PREDICTED: ribonucleoside-diphosphate re 0.997 1.0 0.820 0.0
218201671814 hypothetical protein OsI_30411 [Oryza sa 1.0 0.995 0.807 0.0
115466654814 Os06g0168600 [Oryza sativa Japonica Grou 1.0 0.995 0.807 0.0
413953007815 hypothetical protein ZEAMMB73_966032 [Ze 1.0 0.993 0.803 0.0
186920362814 ribonucleotide diphosphate reductase lar 1.0 0.995 0.805 0.0
242094852815 hypothetical protein SORBIDRAFT_10g00478 0.998 0.992 0.803 0.0
356512785809 PREDICTED: ribonucleoside-diphosphate re 0.998 1.0 0.811 0.0
>gi|224082486|ref|XP_002306711.1| predicted protein [Populus trichocarpa] gi|222856160|gb|EEE93707.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1454 bits (3765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/810 (83%), Positives = 749/810 (92%)

Query: 1   MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
           MYVIKRDGR+EPVRFDKITARLKKLSYGLS +HCDPVLVAQKVCAGVY+GVTTTQLDELA
Sbjct: 1   MYVIKRDGRQEPVRFDKITARLKKLSYGLSNDHCDPVLVAQKVCAGVYRGVTTTQLDELA 60

Query: 61  AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
           AETAA+MT NHPDYALLA R++VS LHK TK SFSETI+ MYN  NK SG+KA L+ADDV
Sbjct: 61  AETAASMTANHPDYALLAARISVSRLHKNTKKSFSETIELMYNNLNKGSGQKAPLIADDV 120

Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
           YEIIMKNA  LD  I+YDRDF++DYFGFKTLERSYLLK+D ++VERPQH+LMRV+VGIHK
Sbjct: 121 YEIIMKNAERLDSEILYDRDFEYDYFGFKTLERSYLLKVDGKIVERPQHLLMRVAVGIHK 180

Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
           DD +SA KTYHLMSQ WFTHATPTLFNAGT QPQLSSCFLLCMKDDSIEGIYDTLK+CA+
Sbjct: 181 DDIESATKTYHLMSQSWFTHATPTLFNAGTAQPQLSSCFLLCMKDDSIEGIYDTLKECAV 240

Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
           ISK AGGIG+++HNI A+GSYI GTNG+SNGIVPML+VFN+TARYVDQGGGKRKGAFAIY
Sbjct: 241 ISKLAGGIGIAVHNIHATGSYIRGTNGTSNGIVPMLRVFNNTARYVDQGGGKRKGAFAIY 300

Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
           LEPWHADIFEFLDLRKN GKEE RARDLF ALW+PDLFMERVR D KWSLFCPS+A GLA
Sbjct: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFLALWIPDLFMERVRGDDKWSLFCPSEAPGLA 360

Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
           D WG EFE LY+QYE E RAK +ISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL
Sbjct: 361 DCWGQEFEKLYTQYEREDRAKKIISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420

Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
           GTIKSSNLCTE++EF+SP ETAVCNLAS+ALPR+V E+GVP +S  SK+VGSR+SKNR F
Sbjct: 421 GTIKSSNLCTEVIEFTSPTETAVCNLASVALPRFVMERGVPAESQSSKMVGSRESKNRYF 480

Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
           DFE+LAEVT  IT NLNKIIDVN+YP+ET RRSNLRHRPIGIG+QGLADTFILLG+PF+S
Sbjct: 481 DFEKLAEVTTTITANLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540

Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
            EA++LNKDIFETIYYHAL++S+ELA KDGPYETY GSP+SKGILQ+DMW +TPSDRWDW
Sbjct: 541 SEAKRLNKDIFETIYYHALRSSSELAAKDGPYETYCGSPVSKGILQMDMWGVTPSDRWDW 600

Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
            +LREMISK+GVRNSLL+APMPTASTSQILGNNECFEPYTSNIY+RRVLSGEF+V+NKHL
Sbjct: 601 DALREMISKSGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVMNKHL 660

Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
           L DLTE+GLWS  LK KII E+GSVSKI EIPE+LKAIYKTVWEIKQKTLVDMAADRGCY
Sbjct: 661 LNDLTEMGLWSPVLKNKIINESGSVSKIPEIPEQLKAIYKTVWEIKQKTLVDMAADRGCY 720

Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
           IDQSQSLNIHMEQPD GKLTSLHF+AWSKG+KTGMYYLRTRAAADAIKFTVDT+VLNNE 
Sbjct: 721 IDQSQSLNIHMEQPDLGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTTVLNNEN 780

Query: 781 ANRADNDVEANLAQVVCSLKNQEECMACGS 810
           AN+A++DV +++AQ  CSL+N+EECMACGS
Sbjct: 781 ANKAEDDVNSDMAQAACSLQNREECMACGS 810

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566650|ref|XP_002524309.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] gi|223536400|gb|EEF38049.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|40850562|gb|AAR95994.1| putative ribonucleotide reductase large subunit [Musa acuminata] Back     alignment and taxonomy information
>gi|225438479|ref|XP_002278202.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Vitis vinifera] gi|296082544|emb|CBI21549.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|218201671|gb|EEC84098.1| hypothetical protein OsI_30411 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115466654|ref|NP_001056926.1| Os06g0168600 [Oryza sativa Japonica Group] gi|55296056|dbj|BAD67618.1| putative ribonucleotide reductase [Oryza sativa Japonica Group] gi|55296229|dbj|BAD67970.1| putative ribonucleotide reductase [Oryza sativa Japonica Group] gi|113594966|dbj|BAF18840.1| Os06g0168600 [Oryza sativa Japonica Group] gi|222635036|gb|EEE65168.1| hypothetical protein OsJ_20270 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|413953007|gb|AFW85656.1| hypothetical protein ZEAMMB73_966032 [Zea mays] Back     alignment and taxonomy information
>gi|186920362|gb|ACC95434.1| ribonucleotide diphosphate reductase large subunit 1 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|242094852|ref|XP_002437916.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor] gi|241916139|gb|EER89283.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|356512785|ref|XP_003525096.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Glycine max] gi|27261142|gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query810
TAIR|locus:2052469816 RNR1 "ribonucleotide reductase 0.998 0.991 0.776 0.0
RGD|1592569792 Rrm1 "ribonucleotide reductase 0.561 0.574 0.659 3.7e-293
MGI|MGI:98180792 Rrm1 "ribonucleotide reductase 0.561 0.574 0.659 6e-293
UNIPROTKB|P23921792 RRM1 "Ribonucleoside-diphospha 0.561 0.574 0.659 2.9e-291
UNIPROTKB|F1MSF1791 RRM1 "Ribonucleoside-diphospha 0.561 0.575 0.661 1e-290
UNIPROTKB|E2R8P1792 RRM1 "Ribonucleoside-diphospha 0.561 0.574 0.654 1e-290
UNIPROTKB|Q5R919792 RRM1 "Ribonucleoside-diphospha 0.561 0.574 0.654 2.6e-290
ZFIN|ZDB-GENE-990415-247794 rrm1 "ribonucleotide reductase 0.614 0.627 0.607 2.5e-285
POMBASE|SPAC1F7.05811 cdc22 "ribonucleoside reductas 0.591 0.590 0.616 3.1e-281
ASPGD|ASPL0000074083865 AN4380 [Emericella nidulans (t 0.554 0.519 0.670 5e-281
TAIR|locus:2052469 RNR1 "ribonucleotide reductase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3401 (1202.3 bits), Expect = 0., P = 0.
 Identities = 634/817 (77%), Positives = 724/817 (88%)

Query:     1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
             MYV+KRDGR+E V FDKITARLKKLSYGLS +HCDPVLVAQKVCAGVYKGVTT+QLDELA
Sbjct:     1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query:    61 AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
             AETAAAMT NHPDYA LA R+AVSNLHK TK SFSETIKDM+ + N RSG K+ L+ADDV
Sbjct:    61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120

Query:   121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
             +EIIM+NAA LD  II            KTLERSYLLK+   VVERPQHMLMRV+VGIHK
Sbjct:   121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHK 180

Query:   181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
             DD DS ++TYHLMSQ WFTHA+PTLFNAGTP+PQLSSCFL+CMKDDSIEGIY+TLK+CA+
Sbjct:   181 DDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240

Query:   241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
             ISKSAGGIG+S+HNIRA+GSYI GTNG+SNGIVPML+VFNDTARYVDQGGGKRKGAFA+Y
Sbjct:   241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300

Query:   301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
             LEPWHAD++EFL+LRKN GKEE RARDLFYALW+PDLFMERV+++G+WSLFCP++A GLA
Sbjct:   301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360

Query:   361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
             D WG EFE LY++YE EG+AK V+ A++LW+EIL SQ+ETGTPYMLFKDSCNRKSNQQNL
Sbjct:   361 DCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNL 420

Query:   421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
             GTIKSSNLCTEI+E++SP ETAVCNLASIALPR+VREKGVP+ S+  KL GS DSKNR F
Sbjct:   421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYF 480

Query:   481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
             DFE+LAEVT  +T NLNKIIDVN+YP+ET + SN+RHRPIGIG+QGLAD FILLG+PF+S
Sbjct:   481 DFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540

Query:   541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
             PEAQQLNKDIFETIYYHALKAS ELA + GPYETY GSP+SKGILQ DMWN+ PSDRWDW
Sbjct:   541 PEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDW 600

Query:   601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
             + LR+MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RRVLSGEF+VVNKHL
Sbjct:   601 AVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660

Query:   661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
             L DLT++GLW+  LK K+I ENGS+  ++EIP++LKAIY+TVWEIKQ+T+VDMAADRGCY
Sbjct:   661 LHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCY 720

Query:   721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
             IDQSQSLNIHM++P+  KLTSLHFY W KG+KTGMYYLR+RAAADAIKFTVDT++L  EK
Sbjct:   721 IDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAMLK-EK 779

Query:   781 ANRADNDVEAN-------LAQVVCSLKNQEECMACGS 810
              + A+ D E         LAQ+VCSL N EEC+ACGS
Sbjct:   780 PSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=IEA;ISS
GO:0006260 "DNA replication" evidence=IEA;ISS;IMP
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0009202 "deoxyribonucleoside triphosphate biosynthetic process" evidence=IMP
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
RGD|1592569 Rrm1 "ribonucleotide reductase M1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:98180 Rrm1 "ribonucleotide reductase M1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P23921 RRM1 "Ribonucleoside-diphosphate reductase large subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MSF1 RRM1 "Ribonucleoside-diphosphate reductase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8P1 RRM1 "Ribonucleoside-diphosphate reductase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R919 RRM1 "Ribonucleoside-diphosphate reductase large subunit" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-247 rrm1 "ribonucleotide reductase M1 polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC1F7.05 cdc22 "ribonucleoside reductase large subunit Cdc22" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000074083 AN4380 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O15909RIR1_TRYBB1, ., 1, 7, ., 4, ., 10.59090.93080.8997N/Ano
P79732RIR1_DANRE1, ., 1, 7, ., 4, ., 10.63590.97650.9962yesno
Q8SR37RIR1_ENCCU1, ., 1, 7, ., 4, ., 10.51210.92590.9765yesno
Q9ZLF9RIR1_HELPJ1, ., 1, 7, ., 4, ., 10.31990.90120.9263yesno
Q03604RIR1_CAEEL1, ., 1, 7, ., 4, ., 10.6250.96040.9873yesno
O66503RIR1_AQUAE1, ., 1, 7, ., 4, ., 10.32210.88510.8951yesno
Q5R919RIR1_PONAB1, ., 1, 7, ., 4, ., 10.64360.97650.9987yesno
P07742RIR1_MOUSE1, ., 1, 7, ., 4, ., 10.65220.97650.9987yesno
P21524RIR1_YEAST1, ., 1, 7, ., 4, ., 10.62800.95060.8671yesno
Q9UW15RIR1_NEUCR1, ., 1, 7, ., 4, ., 10.65460.93580.8159N/Ano
P50648RIR1_PLAF41, ., 1, 7, ., 4, ., 10.60070.97280.9776N/Ano
P55982RIR1_HELPY1, ., 1, 7, ., 4, ., 10.32110.90120.9263yesno
P36602RIR1_SCHPO1, ., 1, 7, ., 4, ., 10.60890.97530.9741yesno
P50647RIR1_PLAFG1, ., 1, 7, ., 4, ., 10.58320.97160.9788N/Ano
O61065RIR1_CRYPV1, ., 1, 7, ., 4, ., 10.58560.97030.9788yesno
Q9SJ20RIR1_ARATH1, ., 1, 7, ., 4, ., 10.78820.99870.9914yesno
Q54Q71RIR1_DICDI1, ., 1, 7, ., 4, ., 10.63310.94930.8839yesno
P48591RIR1_DROME1, ., 1, 7, ., 4, ., 10.61340.97650.9741yesno
P23921RIR1_HUMAN1, ., 1, 7, ., 4, ., 10.64610.97650.9987yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.4.10.979
3rd Layer1.17.40.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00051017
ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity) (810 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.I.2892.1
thymidylate kinase (EC-2.7.4.9) (210 aa)
   • •• 0.942
gw1.VIII.102.1
hypothetical protein (223 aa)
     •• 0.915
gw1.X.4176.1
hypothetical protein (223 aa)
     •• 0.914
eugene3.00400106
RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)
     •• 0.913
fgenesh4_pg.C_LG_XII000913
hypothetical protein (152 aa)
     •• 0.912
gw1.II.1445.1
SubName- Full=Putative uncharacterized protein; (164 aa)
     •• 0.910
estExt_fgenesh4_pg.C_LG_XII0928
adenylate kinase (EC-2.7.4.3) (246 aa)
     •• 0.908
estExt_fgenesh4_pm.C_LG_XV0275
SubName- Full=Putative uncharacterized protein; (248 aa)
     •• 0.908
estExt_Genewise1_v1.C_880196
ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)
• ••••• 0.908
eugene3.00021246
SubName- Full=Putative uncharacterized protein; (200 aa)
     •  0.904

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query810
PLN02437813 PLN02437, PLN02437, ribonucleoside--diphosphate re 0.0
pfam02867516 pfam02867, Ribonuc_red_lgC, Ribonucleotide reducta 0.0
cd01679460 cd01679, RNR_I, Class I ribonucleotide reductase 0.0
TIGR02506617 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate r 0.0
PRK07207965 PRK07207, PRK07207, ribonucleotide-diphosphate red 0.0
COG0209651 COG0209, NrdA, Ribonucleotide reductase, alpha sub 0.0
PRK123651046 PRK12365, PRK12365, ribonucleotide-diphosphate red 1e-167
PRK06539822 PRK06539, PRK06539, ribonucleotide-diphosphate red 1e-156
PRK08447789 PRK08447, PRK08447, ribonucleotide-diphosphate red 1e-147
PRK09102601 PRK09102, PRK09102, ribonucleotide-diphosphate red 1e-123
PRK09209761 PRK09209, PRK09209, ribonucleotide-diphosphate red 1e-114
PRK07088764 PRK07088, PRK07088, ribonucleotide-diphosphate red 1e-111
PRK12364842 PRK12364, PRK12364, ribonucleotide-diphosphate red 1e-101
TIGR02504589 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate redu 8e-97
cd02888464 cd02888, RNR_II_dimer, Class II ribonucleotide red 2e-86
PHA02572753 PHA02572, nrdA, ribonucleoside-diphosphate reducta 5e-81
PRK08665 752 PRK08665, PRK08665, ribonucleotide-diphosphate red 9e-76
PRK06406771 PRK06406, PRK06406, ribonucleotide-diphosphate red 3e-69
TIGR02510548 TIGR02510, NrdE-prime, ribonucleoside-diphosphate 2e-66
PRK09103758 PRK09103, PRK09103, ribonucleotide-diphosphate red 2e-64
TIGR04170698 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate 2e-57
PRK07632699 PRK07632, PRK07632, ribonucleotide-diphosphate red 2e-50
PRK07187721 PRK07187, PRK07187, ribonucleotide-diphosphate red 9e-48
PRK08188714 PRK08188, PRK08188, ribonucleotide-diphosphate red 2e-46
PRK07306720 PRK07306, PRK07306, ribonucleotide-diphosphate red 1e-42
PRK083321740 PRK08332, PRK08332, ribonucleotide-diphosphate red 6e-34
PRK06948595 PRK06948, PRK06948, ribonucleotide reductase-like 1e-33
PRK06556 953 PRK06556, PRK06556, vitamin B12-dependent ribonucl 7e-33
pfam0031779 pfam00317, Ribonuc_red_lgN, Ribonucleotide reducta 1e-23
PRK08115858 PRK08115, PRK08115, ribonucleotide-diphosphate red 1e-23
pfam0347788 pfam03477, ATP-cone, ATP cone domain 1e-15
PRK08115858 PRK08115, PRK08115, ribonucleotide-diphosphate red 5e-09
cd00576401 cd00576, RNR_PFL, Ribonucleotide reductase and Pyr 9e-08
PRK07562 1220 PRK07562, PRK07562, ribonucleotide-diphosphate red 2e-06
PRK08332 1740 PRK08332, PRK08332, ribonucleotide-diphosphate red 2e-04
PRK08332 1740 PRK08332, PRK08332, ribonucleotide-diphosphate red 2e-04
>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large subunit Back     alignment and domain information 
 Score = 1725 bits (4469), Expect = 0.0
 Identities = 669/813 (82%), Positives = 747/813 (91%), Gaps = 3/813 (0%)

Query: 1   MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
           MYV+KRDGR+E V FDKITARLKKLSYGLS++HCDPVLVAQKVCAGVYKGVTT+QLDELA
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSQDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 61  AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
           AETAAAMT NHPDYA+LA R+AVSNLHK TK SFSET+KDMYN+ N+RSG KA L+ADDV
Sbjct: 61  AETAAAMTTNHPDYAILAARIAVSNLHKNTKKSFSETVKDMYNHVNERSGLKAPLIADDV 120

Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
           Y+IIMKNAA LD  IIYDRDFD+DYFGFKTLERSYLLK++ +VVERPQHMLMRVSVGIHK
Sbjct: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVNGKVVERPQHMLMRVSVGIHK 180

Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
           DD +SA+KTYHLMSQ WFTHA+PTLFNAGTP+PQLSSCFL+CMKDDSIEGIYDTLK+CA+
Sbjct: 181 DDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV 240

Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
           ISKSAGGIGLS+HNIRA+GSYI GTNG+SNGIVPML+VFNDTARYVDQGGGKRKGAFAIY
Sbjct: 241 ISKSAGGIGLSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIY 300

Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
           LEPWHADIFEFLDLRKN GKEE RARDLFYALW+PDLFMERV+ +G WSLFCP++A GLA
Sbjct: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWIPDLFMERVQSNGDWSLFCPNEAPGLA 360

Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
           D WG EFE LY++YE EG+AK V+ A++LWF IL SQIETGTPYMLFKDSCNRKSNQQNL
Sbjct: 361 DCWGEEFERLYTKYEREGKAKKVVQAQQLWFAILESQIETGTPYMLFKDSCNRKSNQQNL 420

Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
           GTIKSSNLCTEI+E++SP ETAVCNLASIALPR+VREKGVP++S+ SKLVGS  SKNR F
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGSLGSKNRYF 480

Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
           DFE+LAEVT ++T NLNKIIDVN+YP+ET RRSN+RHRPIGIG+QGLAD FILLG+PF+S
Sbjct: 481 DFEKLAEVTAVVTRNLNKIIDVNYYPVETARRSNMRHRPIGIGVQGLADAFILLGMPFDS 540

Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
           PEAQQLNKDIFETIYYHALKAS+ELA ++GPYETY GSP+SKGILQ DMW +TPS RWDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVSKGILQPDMWGVTPSGRWDW 600

Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
           ++LREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY+RRVLSGEF+VVNKHL
Sbjct: 601 AALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660

Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
           L DLTE+GLW+  LK KII ENGSV KI EIP++LKAIYKTVWEIKQ+TLVDMAADRGCY
Sbjct: 661 LHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCY 720

Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLN--- 777
           IDQSQSLNIHM+QP+ GKLTSLHFYAWSKG+KTGMYYLR+RAAADAIKFTVDT+ L    
Sbjct: 721 IDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTASLKPSA 780

Query: 778 NEKANRADNDVEANLAQVVCSLKNQEECMACGS 810
              A   + DVE  +AQ+VCSL N+EEC+ACGS
Sbjct: 781 TGVAAPEEEDVETKMAQMVCSLDNREECLACGS 813

Length = 813
>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel domain Back     alignment and domain information
>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase Back     alignment and domain information
>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha subunit Back     alignment and domain information
>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|233900 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent Back     alignment and domain information
>gnl|CDD|153089 cd02888, RNR_II_dimer, Class II ribonucleotide reductase, dimeric form Back     alignment and domain information
>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|235796 PRK06406, PRK06406, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|188230 TIGR02510, NrdE-prime, ribonucleoside-diphosphate reductase, alpha chain Back     alignment and domain information
>gnl|CDD|181649 PRK09103, PRK09103, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|211905 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate reductase, class 1b, alpha subunit Back     alignment and domain information
>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236179 PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|180921 PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|180772 PRK06948, PRK06948, ribonucleotide reductase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase; Validated Back     alignment and domain information
>gnl|CDD|215855 pfam00317, Ribonuc_red_lgN, Ribonucleotide reductase, all-alpha domain Back     alignment and domain information
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|217585 pfam03477, ATP-cone, ATP cone domain Back     alignment and domain information
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|153083 cd00576, RNR_PFL, Ribonucleotide reductase and Pyruvate formate lyase Back     alignment and domain information
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 810
KOG1112796 consensus Ribonucleotide reductase, alpha subunit 100.0
PLN02437813 ribonucleoside--diphosphate reductase large subuni 100.0
PRK06539822 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK07207965 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK123651046 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK08447789 ribonucleotide-diphosphate reductase subunit alpha 100.0
PHA02572753 nrdA ribonucleoside-diphosphate reductase subunit 100.0
PRK07088764 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK09103758 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK09209761 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK12364842 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK07187721 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK07632699 ribonucleotide-diphosphate reductase subunit alpha 100.0
TIGR02506617 NrdE_NrdA ribonucleoside-diphosphate reductase, al 100.0
PRK06406771 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK08188714 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK07306720 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK09102601 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK08665 752 ribonucleotide-diphosphate reductase subunit alpha 100.0
PRK08115858 ribonucleotide-diphosphate reductase subunit alpha 100.0
TIGR02504586 NrdJ_Z ribonucleoside-diphosphate reductase, adeno 100.0
PRK06948595 ribonucleotide reductase-like protein; Provisional 100.0
TIGR02510571 NrdE-prime ribonucleoside-diphosphate reductase, a 100.0
PRK06556 953 vitamin B12-dependent ribonucleotide reductase; Va 100.0
PF02867538 Ribonuc_red_lgC: Ribonucleotide reductase, barrel 100.0
cd01679460 RNR_I Class I ribonucleotide reductase. Ribonucleo 100.0
cd02888464 RNR_II_dimer Class II ribonucleotide reductase, di 100.0
PRK083321740 ribonucleotide-diphosphate reductase subunit alpha 100.0
COG0209651 NrdA Ribonucleotide reductase, alpha subunit [Nucl 100.0
PRK07562 1220 ribonucleotide-diphosphate reductase subunit alpha 100.0
cd01676658 RNR_II_monomer Class II ribonucleotide reductase, 100.0
TIGR02505713 RTPR ribonucleoside-triphosphate reductase, adenos 100.0
cd00576401 RNR_PFL Ribonucleotide reductase and Pyruvate form 100.0
PF0031783 Ribonuc_red_lgN: Ribonucleotide reductase, all-alp 99.73
PF0347790 ATP-cone: ATP cone domain; InterPro: IPR005144 The 99.32
PRK08270656 anaerobic ribonucleoside triphosphate reductase; P 99.23
PRK09263711 anaerobic ribonucleoside triphosphate reductase; P 99.14
PRK07111735 anaerobic ribonucleoside triphosphate reductase; P 98.98
PRK00464154 nrdR transcriptional regulator NrdR; Validated 97.82
TIGR02487579 NrdD anaerobic ribonucleoside-triphosphate reducta 97.69
PRK10977509 hypothetical protein; Provisional 97.67
cd01675555 RNR_III Class III ribonucleotide reductase. Ribonu 97.54
PF13597546 NRDD: Anaerobic ribonucleoside-triphosphate reduct 97.31
PRK14704618 anaerobic ribonucleoside triphosphate reductase; P 97.3
PRK08271623 anaerobic ribonucleoside triphosphate reductase; P 97.26
TIGR00244147 transcriptional regulator NrdR. Members of this al 97.23
COG1327156 Predicted transcriptional regulator, consists of a 96.74
PRK08579625 anaerobic ribonucleoside triphosphate reductase; P 96.39
PRK07207 965 ribonucleotide-diphosphate reductase subunit alpha 95.74
TIGR02827586 RNR_anaer_Bdell anaerobic ribonucleoside-triphosph 95.25
PRK12365 1046 ribonucleotide-diphosphate reductase subunit alpha 94.46
PF11230487 DUF3029: Protein of unknown function (DUF3029); In 89.83
>KOG1112 consensus Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-240  Score=1896.57  Aligned_cols=791  Identities=71%  Similarity=1.200  Sum_probs=772.5

Q ss_pred             CeEEccCCceeccChhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003575            1 MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELAAETAAAMTVNHPDYALLAGR   80 (810)
Q Consensus         1 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~lA~r   80 (810)
                      |+|+|||||.|++.+|||+.+|+++|+||++++|||.+|+++|++++|.|+||.||+++++|+|+.|++.||||..||+|
T Consensus         1 myv~krdgr~E~v~fDkItsRi~~l~ygL~~d~vD~v~vt~kvisG~y~gvTt~eldnlaaEtaA~mtt~HPdYa~laaR   80 (796)
T KOG1112|consen    1 MYVVKRDGRQEKVHFDKITSRIQKLSYGLDMDHVDPVEVTQKVISGVYEGVTTVELDNLAAETAASMTTKHPDYAILAAR   80 (796)
T ss_pred             CcccccccccccccHhHHHHHHHHHhcCCCccccCHHHHHHHHHhhhcCCchhHhHHHHHHHHHHHhhcCCccHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCccccCcchHHHHHHHhcHHHHHhhhcccccCCCChhhHHHHHHhhccccC
Q 003575           81 VAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDVYEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMD  160 (810)
Q Consensus        81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yllk~~  160 (810)
                      |.+++|||++.+.|++++++|++|+++++|...+++++++|.++++|.+.|++.|.|+|||.|+|||+++|+++||||.+
T Consensus        81 IavSnlHk~T~k~Fs~vi~~l~~~vn~~tgk~apmisd~~y~Iv~~n~d~lnsaIiYdrDf~y~yFGfkTLerSYLlkin  160 (796)
T KOG1112|consen   81 IAVSNLHKQTKKVFSEVIEDLHNHVNPHTGKHAPMISDEVYNIVMENKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKIN  160 (796)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcCCcccHHHHHHHHhhhhhhccceeeccccceeecchhHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecCCccccccCCCCCCCcccccccccCCChHHHHHHHHHHHH
Q 003575          161 SRVVERPQHMLMRVSVGIHKDDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI  240 (810)
Q Consensus       161 g~~~E~pq~~~~RVA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~  240 (810)
                      |++.|+||||+||||.+||++|++.|.++|++||.++|+||||||||+||+++|||||||+.|.+||+||||+++++||+
T Consensus       161 g~v~ERPQhm~MRVa~gIH~~Die~aietYnLmS~ryfTHAsPTLfnagt~rPQlsSCFL~tmk~DSIeGiydtlkqcA~  240 (796)
T KOG1112|consen  161 GEVAERPQHMLMRVALGIHGEDIEAAIETYNLMSERYFTHASPTLFNAGTPRPQLSSCFLLTMKDDSIEGIYDTLKQCAM  240 (796)
T ss_pred             CchhcChHhHhHHhhhccchhhHHHHHHHHHHhhhhhhccCCchhhhcCCCCccccceEEEEecccchHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcceeeeeecCCCCcccCCCCCCCCcccHHHHHHHHHHHHhhCCCcccCceEEeecCCcccHHHHHHhhhhcCc
Q 003575          241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGK  320 (810)
Q Consensus       241 isk~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~Rrga~~~yl~~wH~DI~~Fl~~K~~~g~  320 (810)
                      |||.+||||+++++||+.||.|+|++|+|+|+||++++||+++++|+|||++|+||.++||++||.||++||++|+|+|+
T Consensus       241 IsKsaGGIGl~vh~IRatGs~i~gTnGtSNGliPmirV~NntaRYvdQGg~kRpGafAiyLEPWHadifdFlelrKn~G~  320 (796)
T KOG1112|consen  241 ISKSAGGIGLNVHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLELRKNTGK  320 (796)
T ss_pred             hhhccCcceEEEeeeeccCcEEecCCCCCCCccchhhhhcchhhHhhcCCCCCCceeEEEechhHHHHHHHHHHHhccCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccceecccCHHHHHHHhcCCceEEecCCCCCCchhhhhhhHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhh
Q 003575          321 EECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIET  400 (810)
Q Consensus       321 e~~r~~~l~~sv~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~et  400 (810)
                      |+.|+|++|+++||||+||+||++|++|+||||++||||.|+||+||+.+|.+||++|+.+++|+|++||..|+++|.||
T Consensus       321 Ee~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~LY~kYEkegr~~k~vkAqklW~aIleaQ~ET  400 (796)
T KOG1112|consen  321 EEFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEALYTKYEKEGRGKKTVKAQKLWYAILEAQVET  400 (796)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhcCCceEEECCccCCchHHHHhHHHHHHHHHHHHhccccceeeHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEechhhhhhCCCCCCCeEEeecCCccccccCCCCCceeeeccccCchhhhhccCCccccccccccccCCCCCccC
Q 003575          401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF  480 (810)
Q Consensus       401 G~P~i~f~D~~Nr~~~~~~~g~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f  480 (810)
                      |.|||+|||+|||++||+|+|+|+|||||+||++|++|+|++||||+||.|++||..                   +..|
T Consensus       401 GtPym~yKDacNRkSNQqnlGtIk~SNLCtEIvEYsspdE~aVCNLASiaLp~fv~~-------------------~~~y  461 (796)
T KOG1112|consen  401 GTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIALPMFVTP-------------------EKTY  461 (796)
T ss_pred             CCceEEehhhhcccccccccceeeecchhHHHhhccCCcceeeeehHhhhhhhhccc-------------------cccc
Confidence            999999999999999999999999999999999999999999999999999999964                   4679


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 003575          481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALK  560 (810)
Q Consensus       481 D~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~  560 (810)
                      ||++|++++++.+|+||++||+|+||+|+|+++|.|+||||||||||||+|+.|++||+|+||+.|+.+|||+|||+|++
T Consensus       462 dF~kl~ev~kvvt~NLNkiID~NYYPv~eAr~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~qIFEtiYy~ale  541 (796)
T KOG1112|consen  462 DFEKLAEVTKVVTRNLNKIIDVNYYPVEEARRSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNKQIFETIYYAALE  541 (796)
T ss_pred             cHHHHHHHHHHHHhhhhheeccCcccchHhhhcccccCCccccchhHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCccccCccccccccCCCCCcccHHHHHHHHHhcCccccceeccCCCcchhhhcCCCccccccc
Q 003575          561 ASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT  640 (810)
Q Consensus       561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~s~gieP~~  640 (810)
                      ||+|||++.|||+.|+|||.|+|+||||+|+++|++.|||+.||++|++||+|||.++|.|||+|||||+|++++|||+.
T Consensus       542 AScelA~~eGpyetyeGSPvSkGilq~dmw~~~pt~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQIlGnNE~fEP~t  621 (796)
T KOG1112|consen  542 ASCELAQKEGPYETYEGSPVSKGILQFDMWNVKPTDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQILGNNECFEPYT  621 (796)
T ss_pred             HhHHHHHhcCCCcccCCCcccccccchhhcCCCCCcccCHHHHHHHHHHhccccceeeccCCCcchhhhhcCccccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeEEcccCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCccccccCCchHHHhhccccccCChHHHHHHHHHhCcc
Q 003575          641 SNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY  720 (810)
Q Consensus       641 s~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~  720 (810)
                      +|+|+||+++|+|++||+||+++|.++|+|+++||+.++..+||||++|.+|+++|++|||+|||+|+.+|+|||+|+.|
T Consensus       622 sNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqktvi~mAAdRg~~  701 (796)
T KOG1112|consen  622 SNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQKTVIDMAADRGAF  701 (796)
T ss_pred             ccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeEeeCCCChHHHHHHHHHHHHcCCceEEEEecCccccccccccccccccccccc---cCcc--chhhhhhccc
Q 003575          721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEKA---NRAD--NDVEANLAQV  795 (810)
Q Consensus       721 vDqs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~yY~r~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~  795 (810)
                      ||||||+||++..+++++|.++|+|.||+||||||||+|+++++++++||||+..+.....   +++.  ++...+...+
T Consensus       702 iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~~~~~~~~~~~~~~e~~~~~~~~~  781 (796)
T KOG1112|consen  702 IDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLNEKAEVAEGDSKEEEEDEYNTAVM  781 (796)
T ss_pred             cccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhcccccccccchhhhHHhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999977554221   1111  1122255678


Q ss_pred             ccccCCccccccCCC
Q 003575          796 VCSLKNQEECMACGS  810 (810)
Q Consensus       796 ~~~~~~~~~c~~c~~  810 (810)
                      +|+++++|.|++||+
T Consensus       782 ~c~~~n~e~C~mCss  796 (796)
T KOG1112|consen  782 VCSLDNPEACLMCSS  796 (796)
T ss_pred             hhccCCchHhhhcCC
Confidence            999999999999996

>PLN02437 ribonucleoside--diphosphate reductase large subunit Back     alignment and domain information
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit Back     alignment and domain information
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent Back     alignment and domain information
>PRK06948 ribonucleotide reductase-like protein; Provisional Back     alignment and domain information
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain Back     alignment and domain information
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated Back     alignment and domain information
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1 Back     alignment and domain information
>cd01679 RNR_I Class I ribonucleotide reductase Back     alignment and domain information
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form Back     alignment and domain information
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form Back     alignment and domain information
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent Back     alignment and domain information
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase Back     alignment and domain information
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1 Back     alignment and domain information
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators [] Back     alignment and domain information
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK00464 nrdR transcriptional regulator NrdR; Validated Back     alignment and domain information
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase Back     alignment and domain information
>PRK10977 hypothetical protein; Provisional Back     alignment and domain information
>cd01675 RNR_III Class III ribonucleotide reductase Back     alignment and domain information
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A Back     alignment and domain information
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>TIGR00244 transcriptional regulator NrdR Back     alignment and domain information
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription] Back     alignment and domain information
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional Back     alignment and domain information
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase Back     alignment and domain information
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional Back     alignment and domain information
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query810
3hnc_A792 Crystal Structure Of Human Ribonucleotide Reductase 0.0
1zyz_A888 Structures Of Yeast Ribonucloetide Reductase I Leng 0.0
3tb9_A888 Structure Of Yeast Ribonucleotide Reductase 1 Q288a 0.0
3s8a_A888 Structure Of Yeast Ribonucleotide Reductase R293a W 0.0
2wgh_A676 Human Ribonucleotide Reductase R1 Subunit (Rrm1) In 0.0
4r1r_A761 Ribonucleotide Reductase R1 Protein With Substrate, 7e-54
2xap_A761 Ribonucleotide Reductase Y731no2y Modified R1 Subun 1e-53
2xak_A761 Ribonucleotide Reductase Y730no2y Modified R1 Subun 1e-53
3r1r_A761 Ribonucleotide Reductase R1 Protein With Amppnp Occ 1e-53
2xaw_A761 Ribonucleotide Reductase Y730no2y And Y731f Modifie 1e-53
2xax_A761 Ribonucleotide Reductase Y730no2y And Y731a Modifie 1e-53
2xav_A761 Ribonucleotide Reductase Y731no2y And Y730f Modifie 1e-53
1r1r_A761 Ribonucleotide Reductase R1 Protein Mutant Y730f Wi 1e-53
1rlr_A761 Structure Of Ribonucleotide Reductase Protein R1 Le 2e-53
7r1r_A761 Ribonucleotide Reductase E441q Mutant R1 Protein Fr 3e-53
6r1r_A761 Ribonucleotide Reductase E441d Mutant R1 Protein Fr 3e-53
5r1r_A761 Ribonucleotide Reductase E441a Mutant R1 Protein Fr 5e-53
2xay_A761 Ribonucleotide Reductase Y730no2y And C439a Modifie 2e-52
2xaz_A761 Ribonucleotide Reductase Y730no2y And C439s Modifie 2e-52
1pem_A714 Ribonucleotide Reductase Protein R1e From Salmonell 1e-43
1xjk_A644 Structural Mechanism Of Allosteric Substrate Specif 2e-38
1xje_A644 Structural Mechanism Of Allosteric Substrate Specif 3e-38
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1 Bound To The Effector Ttp Length = 792 Back     alignment and structure 
Iteration: 1

 Score = 1076 bits (2782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/811 (63%), Positives = 639/811 (78%), Gaps = 20/811 (2%)
Query: 1   MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
           M+VIKRDGR+E V FDKIT+R++KL YGL+ +  DP  +  KV  G+Y GVTT +LD LA
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61  AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
           AETAA +T  HPDYA+LA R+AVSNLHK TK  FS+ ++D+YNY N  +GK + +VA   
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YEIIMKNAACLDGAIIXXXXXXXXXXXXKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
            +I++ N   L+ AII            KTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
           +D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
           ISKSAGGIG+++  IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
           LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV  +  WSL CP++  GL 
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
           + WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
           GTIK SNLCTEIVE++S +E AVCNLAS+AL  YV                   +    +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
           DF++LAEVTK++  NLNKIID+N+YP+     SN RHRPIGIG+QGLAD FIL+  PFES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
            EAQ LNK IFETIYY AL+AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
             L+E I+K G+RNSLL+APMPTAST+QILGNNE  EPYTSNIYTRRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
           LKDLTE GLW   +K +II  NGS+  I EIP++LK +YKTVWEI QKT++ MAA+RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNNEK 780
           IDQSQSLNIH+ +P++GKLTS+HFY W +G+KTGMYYLRTR AA+ I+FT++   L +++
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 ANRADNDVEA-NLAQVVCSLKNQEECMACGS 810
               + + +  N A +VCSL+N++EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I Length = 888 Back     alignment and structure
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With Amppnp And Cdp Length = 888 Back     alignment and structure
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With Dgtp Length = 888 Back     alignment and structure
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In Complex With Datp And Mg. Length = 676 Back     alignment and structure
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp And Effector Dttp From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of E. Coli To 2.1 A Resolution Length = 761 Back     alignment and structure
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying The Activity Site From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A Reduced Active Site From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1 Length = 761 Back     alignment and structure
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From Escherichia Coli Length = 761 Back     alignment and structure
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1 Subunit Of E. Coli Length = 761 Back     alignment and structure
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella Typhimurium Length = 714 Back     alignment and structure
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dgtp-Adp Complex Length = 644 Back     alignment and structure
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity In A Ribonucleotide Reductase: Dttp-Gdp Complex Length = 644 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query810
3hnc_A792 Ribonucleoside-diphosphate reductase large subuni; 0.0
3k8t_A888 Ribonucleoside-diphosphate reductase large chain; 0.0
2wgh_A676 Ribonucleoside-diphosphate reductase large subunit 0.0
2xap_A761 Ribonucleoside-diphosphate reductase 1 subunit alp 0.0
1peq_A714 Ribonucleoside-diphosphate reductase 2 alpha chain 0.0
3o0q_A644 Ribonucleoside-diphosphate reductase; alpha/beta b 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A* Length = 792 Back     alignment and structure
 Score = 1239 bits (3208), Expect = 0.0
 Identities = 527/811 (64%), Positives = 652/811 (80%), Gaps = 20/811 (2%)

Query: 1   MYVIKRDGRKEPVRFDKITARLKKLSYGLSKEHCDPVLVAQKVCAGVYKGVTTTQLDELA 60
           M+VIKRDGR+E V FDKIT+R++KL YGL+ +  DP  +  KV  G+Y GVTT +LD LA
Sbjct: 1   MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60

Query: 61  AETAAAMTVNHPDYALLAGRVAVSNLHKITKNSFSETIKDMYNYYNKRSGKKASLVADDV 120
           AETAA +T  HPDYA+LA R+AVSNLHK TK  FS+ ++D+YNY N  +GK + +VA   
Sbjct: 61  AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120

Query: 121 YEIIMKNAACLDGAIIYDRDFDFDYFGFKTLERSYLLKMDSRVVERPQHMLMRVSVGIHK 180
            +I++ N   L+ AIIYDRDF ++YFGFKTLERSYLLK++ +V ERPQHMLMRVSVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180

Query: 181 DDTDSALKTYHLMSQHWFTHATPTLFNAGTPQPQLSSCFLLCMKDDSIEGIYDTLKKCAI 240
           +D D+A++TY+L+S+ WFTHA+PTLFNAGT +PQLSSCFLL MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240

Query: 241 ISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRKGAFAIY 300
           ISKSAGGIG+++  IRA+GSYI GTNG+SNG+VPML+V+N+TARYVDQGG KR GAFAIY
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300

Query: 301 LEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLA 360
           LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV  +  WSL CP++  GL 
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360

Query: 361 DSWGIEFEHLYSQYEEEGRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNL 420
           + WG EFE LY+ YE++GR + V+ A++LW+ I+ SQ ETGTPYML+KDSCNRKSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 421 GTIKSSNLCTEIVEFSSPEETAVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLF 480
           GTIK SNLCTEIVE++S +E AVCNLAS+AL  YV                   +    +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461

Query: 481 DFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIGIGIQGLADTFILLGLPFES 540
           DF++LAEVTK++  NLNKIID+N+YP+     SN RHRPIGIG+QGLAD FIL+  PFES
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521

Query: 541 PEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITPSDRWDW 600
            EAQ LNK IFETIYY AL+AS +LA + GPYETY GSP+SKGILQ DMWN+TP+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581

Query: 601 SSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHL 660
             L+E I+K G+RNSLL+APMPTAST+QILGNNE  EPYTSNIYTRRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641

Query: 661 LKDLTELGLWSHALKTKIIYENGSVSKISEIPEELKAIYKTVWEIKQKTLVDMAADRGCY 720
           LKDLTE GLW   +K +II  NGS+  I EIP++LK +YKTVWEI QKT++ MAA+RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701

Query: 721 IDQSQSLNIHMEQPDHGKLTSLHFYAWSKGMKTGMYYLRTRAAADAIKFTVDTSVLNN-E 779
           IDQSQSLNIH+ +P++GKLTS+HFY W +G+KTGMYYLRTR AA+ I+FT++   L + E
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761

Query: 780 KANRADNDVEANLAQVVCSLKNQEECMACGS 810
           K ++ + + E N A +VCSL+N++EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888 Back     alignment and structure
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens} Length = 676 Back     alignment and structure
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B Length = 761 Back     alignment and structure
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E* Length = 714 Back     alignment and structure
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* Length = 644 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 810
d1rlra2525 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide r 1e-140
d1peqa2525 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide r 1e-116
d1rlra1212 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide r 9e-54
d1l1la_721 c.7.1.4 (A:) B12-dependent (class II) ribonucleoti 4e-40
d1peqa1162 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide r 2e-30
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 525 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  423 bits (1087), Expect = e-140
 Identities = 140/571 (24%), Positives = 218/571 (38%), Gaps = 71/571 (12%)

Query: 216 SSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPM 275
           SSC L+    DS++ I  T            GIG++   IRA GS I G      G +P 
Sbjct: 2   SSCVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPF 60

Query: 276 LQVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVP 335
            + F    +   QGG  R GA  ++   WH ++   L L+ N+G E  R R + Y + + 
Sbjct: 61  YKHFQTAVKSCSQGG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQIN 119

Query: 336 DLFMERVRDDGKWSLFCPSDASGLADSWGIEFEHLYSQYEE----EGRAKMVISARKLWF 391
            L   R+      +LF PSD  GL D++  + E     Y +    +   K  + A +L+ 
Sbjct: 120 KLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFS 179

Query: 392 EILNSQIETGTPYMLFK-DSCNRKSNQQNLGTIKSSNLCTEIVEFSSPEETAVCNLASIA 450
            ++  +  TG  Y+               +  ++ SNLC EI   + P          IA
Sbjct: 180 LMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIA 239

Query: 451 LPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETT 510
           L                       +   + + + L E+  +    L+ ++D   YPI   
Sbjct: 240 LCTLSAF-----------------NLGAINNLDELDELAILAVRALDALLDYQDYPIPAA 282

Query: 511 RRSNLRHRPIGIGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDG 570
           +R  +  R +GIG+   A      G  +    A  L    FE I Y+ LKAS ELA + G
Sbjct: 283 KRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQG 342

Query: 571 PYETYFGSPMSKGILQVDMWNITPSD------RWDWSSLREMISKNGVRNSLLVAPMPTA 624
               +  +  +KGIL +D +             +DW +LRE I  +G+RNS L A MP+ 
Sbjct: 343 ACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSE 402

Query: 625 STSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALKTKIIYENGS 684
           ++SQI       EP    +  +    G    V                            
Sbjct: 403 TSSQISNATNGIEPPRGYVSIKASKDGILRQVV--------------------------- 435

Query: 685 VSKISEIPEELKAIYKTVWEIK-QKTLVDMAADRGCYIDQSQSLNIHMEQPDH------- 736
                   E L   Y+ +WE+      + +      +IDQS S N + +           
Sbjct: 436 -----PDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPM 490

Query: 737 GKLTSLHFYAWSKGMKTGMYYLRTRAAADAI 767
            +L      A+  G+KT +YY  TR   D +
Sbjct: 491 QQLLKDLLTAYKFGVKT-LYYQNTRDDIDDL 520
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 525 Back     information, alignment and structure
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 212 Back     information, alignment and structure
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]} Length = 721 Back     information, alignment and structure
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 162 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query810
d1rlra2525 R1 subunit of ribonucleotide reductase, C-terminal 100.0
d1peqa2525 R1 subunit of ribonucleotide reductase, C-terminal 100.0
d1l1la_721 B12-dependent (class II) ribonucleotide reductase 100.0
d1rlra1212 R1 subunit of ribonucleotide reductase, N-terminal 100.0
d1peqa1162 R1 subunit of ribonucleotide reductase, N-terminal 99.9
d1hk8a_561 Class III anaerobic ribonucleotide reductase NRDD 95.02
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PFL-like glycyl radical enzymes
superfamily: PFL-like glycyl radical enzymes
family: R1 subunit of ribonucleotide reductase, C-terminal domain
domain: R1 subunit of ribonucleotide reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=1018.63  Aligned_cols=493  Identities=31%  Similarity=0.504  Sum_probs=457.1

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             76533333457986879999999999997539752000023379983357888777841189999999999740897345
Q 003575          215 LSSCFLLCMKDDSIEGIYDTLKKCAIISKSAGGIGLSIHNIRASGSYIHGTNGSSNGIVPMLQVFNDTARYVDQGGGKRK  294 (810)
Q Consensus       215 lsSCfl~~~~~Ds~~~I~~~~~~~a~i~k~ggGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~~~~~~~v~qgG~~Rr  294 (810)
                      +|||||+++ +||++||++++++++.++|.|||||+|||.|||+|++|+|++|+|||||||||+||.++.+|+||| +||
T Consensus         1 ~ssCfv~~v-~Ds~~~I~~~~~~~~~~~k~ggGvG~~~s~lR~~Gs~i~g~~g~ssG~v~f~k~~d~~~~~i~qgg-~Rr   78 (525)
T d1rlra2           1 FSSCVLIEC-GDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-VRG   78 (525)
T ss_dssp             CCCCEEEEC-CSSHHHHHHHHHHHHHTTTTTCCEEEECCSSCCCSCCSSSSCCCSCCSHHHHHHHHHHHTTTSSSS-SSS
T ss_pred             CCCEECCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC
T ss_conf             960430789-999899999999999998647749840366688998247989827876659999999987877289-432


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHH---HHHHHHH
Q ss_conf             7328850478666899999523059310000135300224988899986599658766798897211120---2699999
Q 003575          295 GAFAIYLEPWHADIFEFLDLRKNQGKEECRARDLFYALWVPDLFMERVRDDGKWSLFCPSDASGLADSWG---IEFEHLY  371 (810)
Q Consensus       295 ga~~~~l~~wH~DI~~Fl~~K~~~g~~~~r~~~~~~sv~i~D~Fm~~v~~~~~w~Lf~P~~~~~L~~~~g---~eF~~~Y  371 (810)
                      ||+|+||++|||||++||++|++.|++.+|+++++++|+|||+||++++++++|+||+|.+++.+.+.++   ++++..|
T Consensus        79 gA~~~~l~~~HpDI~~Fi~~K~~~g~~~~~~~~~~~~v~i~d~fm~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  158 (525)
T d1rlra2          79 GAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLY  158 (525)
T ss_dssp             CCEEEEEETTBTTHHHHTTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEEECTTTSTTHHHHHHHCHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             01799975996319999984567674255522025432577478998741766336453556543343114578888775


Q ss_pred             HHHHHC-CCEEEEEEHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCC-CCCCEEEEECCCCCCCCCCCC--------CCC
Q ss_conf             999880-9403897299999999998774177305720136641898-998807753389643446899--------972
Q 003575          372 SQYEEE-GRAKMVISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQ-QNLGTIKSSNLCTEIVEFSSP--------EET  441 (810)
Q Consensus       372 ~~~e~~-~~~~~~i~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~-~~~g~I~~sNlC~EI~~~~~~--------~e~  441 (810)
                      .+++.. ++.+++|+||+||.+|++++++||+||++|+|++|+++|. ++.|+|.+||||+||+||+.+        ++.
T Consensus       159 ~~~~~~~~~~~~~v~Arel~~~i~~~~~etG~P~i~f~d~~N~~~~~~~~~~~I~~sNlC~Ei~l~~~~~~~~~~~~~~~  238 (525)
T d1rlra2         159 TKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEI  238 (525)
T ss_dssp             HHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCEEEEEHHHHHHSSSBCTTTSCCCCCCTTSCCCCCCBCCSSTTCTTCBC
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             54431576230249899999999986131476422653121135553445644635774221136787433467776534


Q ss_pred             EEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCE
Q ss_conf             01011545701222005976445542212567888866798899999999999999887418998488999851159702
Q 003575          442 AVCNLASIALPRYVREKGVPVQSNVSKLVGSRDSKNRLFDFERLAEVTKIITENLNKIIDVNHYPIETTRRSNLRHRPIG  521 (810)
Q Consensus       442 ~~CNL~sinL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fd~~~l~~~v~~avr~LD~vId~~~~p~~~~~~~~~~~R~IG  521 (810)
                      ++|||+|+|+.++                         |||++|+++|+++||+||+|||.+.||+|++++.+++.|+||
T Consensus       239 ~~~~l~s~n~~~~-------------------------~d~~~l~~~v~~~vr~LD~vid~~~~p~~~~~~~~~~~R~IG  293 (525)
T d1rlra2         239 ALCTLSAFNLGAI-------------------------NNLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLG  293 (525)
T ss_dssp             EECEEEEEETTSC-------------------------SSGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCCEE
T ss_pred             EEEECCCCCCCCC-------------------------CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             5553234673311-------------------------427887799999999999743011465047888988887640


Q ss_pred             EECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC------C
Q ss_conf             1150499999982999999988999999999999999999999999709999997996666764320124799------9
Q 003575          522 IGIQGLADTFILLGLPFESPEAQQLNKDIFETIYYHALKASAELAVKDGPYETYFGSPMSKGILQVDMWNITP------S  595 (810)
Q Consensus       522 iGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~a~~aS~eLAkE~G~~~~f~~S~~~~G~l~~d~~~~~~------~  595 (810)
                      ||+|||||+|+++|++|+|+||++++++|||+|+++|++||++||+|+|+||.|++|+|++|+++++.+....      .
T Consensus       294 LGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLAke~G~~p~f~~s~~~~g~~~~~~~~~~~~~~~~~~  373 (525)
T d1rlra2         294 IGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEP  373 (525)
T ss_dssp             EEEECHHHHHHHTTCCSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBGGGGTCCHHHHSCGGGGGTCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             43000889999878876078877668999999999999999999985398874321244325542333212332223442


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCHHHHH
Q ss_conf             80138999999984286554300149995311004897522235545256882557527738788999998399919988
Q 003575          596 DRWDWSSLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLTELGLWSHALK  675 (810)
Q Consensus       596 ~~~~W~~Lr~~i~~~G~RNs~l~AiaPT~s~S~i~g~t~gieP~~s~~y~r~~~~G~~~~vn~~l~~~L~~~g~~~~~~~  675 (810)
                      ..++|++||++|++||+|||+++|+|||||+|+|+|+|+||||+|+++|.|++..|.+..+++                 
T Consensus       374 ~~~~w~~lr~~i~~~G~RNs~~~aiaPT~s~s~i~~~s~gieP~~~~~~~r~~~~g~~~~~~~-----------------  436 (525)
T d1rlra2         374 LHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVP-----------------  436 (525)
T ss_dssp             CCSCHHHHHHHHHHHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSCSEEEEEETTEEEEEECT-----------------
T ss_pred             CCCCHHHHHHHHHHHCEECCHHHHHHCCCCHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECC-----------------
T ss_conf             225889999999973855521221103355666505677556342128999936840576368-----------------


Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHCCCCCCC-CHHHHHHHHHHHCCCCCCCCCEEEEECC-------CCHHHHHHHHHHHH
Q ss_conf             898714985113568966788610000148-9499999999857624346410576179-------99678999999999
Q 003575          676 TKIIYENGSVSKISEIPEELKAIYKTVWEI-KQKTLVDMAADRGCYIDQSQSLNIHMEQ-------PDHGKLTSLHFYAW  747 (810)
Q Consensus       676 ~~i~~~~gsi~~~~~~p~~~k~~f~tA~ei-~~~~~i~~~a~~Q~~vDqsiS~tl~~~~-------~~~~~i~~~~~~Aw  747 (810)
                                     .+++++++|+||||| ++.+||+|+|++|||||||||+|+|+++       .+.++|..+|++||
T Consensus       437 ---------------~~~~l~~~~~ta~ei~~~~~~v~~~A~~Q~~iDqsiS~tln~~~~~~~~~~~~~~~v~~~~~~Aw  501 (525)
T d1rlra2         437 ---------------DYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAY  501 (525)
T ss_dssp             ---------------THHHHTTTCCCGGGSSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCCCHHHHHHHHHHHH
T ss_pred             ---------------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             ---------------84999999999998059469999999874406499819447784225788888999999999999


Q ss_pred             HCCCCEEEEEECCCCCCCCC
Q ss_conf             84996589984375322110
Q 003575          748 SKGMKTGMYYLRTRAAADAI  767 (810)
Q Consensus       748 k~GlKt~~yY~r~~~~~~~~  767 (810)
                      |+|||| +||+|++.+....
T Consensus       502 k~GlKT-~Yy~~Sr~~~~~~  520 (525)
T d1rlra2         502 KFGVKT-LYYQNTRDDIDDL  520 (525)
T ss_dssp             HTTCCE-ECCEEECCCHHHH
T ss_pred             HHCCCC-CCCCCCHHHHHHH
T ss_conf             828882-0769371331014
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide reductase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure