Citrus Sinensis ID: 006532
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 641 | 2.2.26 [Sep-21-2011] | |||||||
| Q8XWM7 | 533 | L-aspartate oxidase 1 OS= | yes | no | 0.809 | 0.973 | 0.470 | 1e-125 | |
| Q51363 | 538 | L-aspartate oxidase OS=Ps | yes | no | 0.809 | 0.964 | 0.448 | 1e-121 | |
| Q9KPA4 | 535 | L-aspartate oxidase OS=Vi | yes | no | 0.803 | 0.962 | 0.446 | 1e-118 | |
| Q8ZD80 | 533 | L-aspartate oxidase OS=Ye | yes | no | 0.804 | 0.968 | 0.430 | 1e-113 | |
| Q8ZMX9 | 540 | L-aspartate oxidase OS=Sa | yes | no | 0.817 | 0.970 | 0.426 | 1e-111 | |
| P10902 | 540 | L-aspartate oxidase OS=Es | N/A | no | 0.815 | 0.968 | 0.422 | 1e-110 | |
| Q8Z4K0 | 540 | L-aspartate oxidase OS=Sa | N/A | no | 0.815 | 0.968 | 0.426 | 1e-110 | |
| Q8XA23 | 540 | L-aspartate oxidase OS=Es | N/A | no | 0.801 | 0.951 | 0.427 | 1e-109 | |
| Q8XQG4 | 536 | L-aspartate oxidase 2 OS= | no | no | 0.794 | 0.949 | 0.403 | 6e-99 | |
| Q9K107 | 502 | L-aspartate oxidase OS=Ne | yes | no | 0.772 | 0.986 | 0.411 | 3e-96 |
| >sp|Q8XWM7|NADB1_RALSO L-aspartate oxidase 1 OS=Ralstonia solanacearum (strain GMI1000) GN=nadB1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 257/546 (47%), Positives = 324/546 (59%), Gaps = 27/546 (4%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
FD +V+GSG+AGL AL +A H V VI+K E +++AQGG++AVL +DS + H+
Sbjct: 3 FDVAVVGSGLAGLTVALHLADHRRVVVISKRTLPEGASDWAQGGIAAVLDSNDSHDEHVD 62
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNL--HLAREGGHSHHRIV 200
DT++AGA LCD+ R + G I LI G F R L HL REGGH H RI+
Sbjct: 63 DTLIAGAGLCDEAATRYIVENGRAAIEWLIGHGVPFTRDARAELGFHLTREGGHRHRRII 122
Query: 201 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT--TLDGPDAVCHGVDTLNVETQE 258
HAAD TG + L++ V + PNI++ E HFAIDL+T L P CHG+ L+ + +
Sbjct: 123 HAADATGHAVVTTLVDKVRAHPNITLLEDHFAIDLVTDAKLGLPGMRCHGLYVLDCKRGD 182
Query: 259 VVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADE 318
V I+ T+LA+GGAG +Y TTNP ATGDG+AMA RA ++NMEF+QFHPT L
Sbjct: 183 VKTIIASQTVLATGGAGKVYLYTTNPDTATGDGIAMAWRAGCRVANMEFIQFHPTCL--- 239
Query: 319 GLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLK 378
SFLI+EAVRG+GG L RFMP +DERAELAPRD+VAR+ID ++K
Sbjct: 240 ------YHPFAKSFLISEAVRGEGGKLVLPDGTRFMPAHDERAELAPRDIVARAIDFEMK 293
Query: 379 KRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQ 438
KR V LDISH+ I HFP I A CL+ G+DIT QPIPVVPAAHY CGGV
Sbjct: 294 KRGLDCVYLDISHQSPAFIQEHFPTILARCLELGIDITRQPIPVVPAAHYTCGGVVTDQL 353
Query: 439 GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNW 498
G T++ GLY GE A TGLHGANRLASNSLLE +V R A Q + + W
Sbjct: 354 GRTDIAGLYAVGETAYTGLHGANRLASNSLLECMVIGRGAAQDILGQPATAPTPTPIPAW 413
Query: 499 WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEW 558
V V HN EL+ +MW YVGIVR+ L+ A+ RI L E
Sbjct: 414 DESRVTDADEEVVVSHNW--------DELRRMMWNYVGIVRTNKRLERAQHRIALLREEI 465
Query: 559 ETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLP 618
Y + V + E+RNL A L+V SAL+RHESRGLH+ D+P K LP
Sbjct: 466 AEY-----YANFRVSHDLLELRNLVEAASLIVDSALSRHESRGLHFSRDYPQTLP-KALP 519
Query: 619 TIILPS 624
T++ P+
Sbjct: 520 TVMQPA 525
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 1EC: 6 |
| >sp|Q51363|NADB_PSEAE L-aspartate oxidase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=nadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/551 (44%), Positives = 321/551 (58%), Gaps = 32/551 (5%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D VIGSG AGL AL + +H +AV++K E + +T +AQGGV+AVL +D+VESH++D
Sbjct: 8 DVLVIGSGAAGLSLALTLPEHLRIAVLSKGELSQGSTYWAQGGVAAVLDDTDTVESHVED 67
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-------LHLAREGGHSH 196
T+VAG LC ++ VR + I+ LI G F R E N HL REGGHSH
Sbjct: 68 TLVAGGGLCREDAVRFTVEHSREAIQWLIEQGVPFTRDEQHNHEEGSFEYHLTREGGHSH 127
Query: 197 HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT--TLDGPDAVCHGVDTLNV 254
RI+HAAD TG I LL PNI + A+DL+T L P C G LN
Sbjct: 128 RRIIHAADATGAAIFNTLLAQARRRPNIELLSQRVAVDLITERKLGLPSKRCLGAYVLNR 187
Query: 255 ETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
E+ EV F ++ ++LASGGA +Y T+NP +GDG+AMA RA + N+EF QFHPT
Sbjct: 188 ESGEVDTFRARFSVLASGGASKVYLYTSNPDGNSGDGIAMAWRAGCRVGNLEFNQFHPTC 247
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 374
L + SFLITEA+RG+G +L ERFMP +D R ELAPRD+VAR+ID
Sbjct: 248 L---------YHPQAKSFLITEALRGEGALLRLPNGERFMPRFDPRGELAPRDIVARAID 298
Query: 375 DQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVR 434
++K+ V LDISHKP E I +HFP + CL +G+DIT QPIPVVPAAHY CGGV
Sbjct: 299 HEMKRLGIDCVYLDISHKPAEFIKAHFPTVYERCLDFGIDITQQPIPVVPAAHYTCGGVL 358
Query: 435 AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS 494
G T+V GLY GE TGLHGANR+ASNSLLE V+AR A + T + S
Sbjct: 359 VDQHGHTDVPGLYAIGETTFTGLHGANRMASNSLLECFVYARSAAADMLQRLPGTPVPES 418
Query: 495 ASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDEL 554
+W V + HN EL+ MW YVGIVR+ LQ A+ R+ L
Sbjct: 419 LPSWDASQVTDSDEDVIIAHNW--------DELRRFMWDYVGIVRTNKRLQRAQHRVRLL 470
Query: 555 EAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEEN 614
+E + + + V + E+RNL A+L++ SA+ R ESRGLHY +D+P +
Sbjct: 471 LSEIDEF-----YSNYKVSRDLIELRNLALVAELIIRSAMQRRESRGLHYTLDYPDLLPE 525
Query: 615 KRLPTIILPSL 625
R TI++P +
Sbjct: 526 AR-DTILVPPI 535
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q9KPA4|NADB_VIBCH L-aspartate oxidase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=nadB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/549 (44%), Positives = 331/549 (60%), Gaps = 34/549 (6%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D VIGSG AGL AL+VA++G V V++K E T YAQGG++AV SDS+ESH+QD
Sbjct: 10 DVLVIGSGAAGLSLALQVAQYGKVIVLSKGPRSEGATFYAQGGIAAVFDESDSIESHVQD 69
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-----LHLAREGGHSHHR 198
T++AGA +CD++TVR + + ++ LI G FD+ ED + HL REGGHSH R
Sbjct: 70 TLIAGAGICDEQTVRFIAEHAKECVQWLIDGGVPFDKEEDSDNDHPRYHLTREGGHSHRR 129
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL----DGPDAVCHGVDTLNV 254
I+HAAD TG ++ +L + + PNI+V E H A+DL+T D V V N
Sbjct: 130 ILHAADATGMAMQTSLQDNAHNHPNITVLERHNALDLITEDKIGGDANKVVGAYVWNRNA 189
Query: 255 ETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
E E +R +K +LA+GGA +Y T+NP V++GDG+AMA RA ++N+EF QFHPT
Sbjct: 190 EHVETIR--AKFVVLATGGASKVYQYTSNPDVSSGDGIAMAWRAGCRVANLEFNQFHPTC 247
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 374
L P+ +FL+TEA+RG+G L RFMP +DERAELAPRD+VAR+ID
Sbjct: 248 L------YHPEA---RNFLLTEALRGEGAYLRRPDGSRFMPDFDERAELAPRDIVARAID 298
Query: 375 DQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVR 434
++K+ + LDISHKP + I HFP I + + G+D+T +PIP+VPAAHY CGGV
Sbjct: 299 FEMKRLGADCMYLDISHKPADFIEKHFPTIYSRLMDLGIDMTKEPIPIVPAAHYTCGGVM 358
Query: 435 AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS 494
QG+T+++ LY GEV+ TGLHGANR+ASNSLLE +V+A A Q I + S+ S
Sbjct: 359 VNPQGQTDLKQLYAIGEVSYTGLHGANRMASNSLLECVVYAWSASQDIIAQLPNASMPES 418
Query: 495 ASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDEL 554
W V + HN EL+ MW Y+GIVR+ L+ A RI L
Sbjct: 419 LPAWDESQVTCSDEEVVLQHNW--------HELRLFMWDYMGIVRTNKRLERAMRRIQLL 470
Query: 555 EAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEEN 614
+ E Y + V EMRNL A+L+V A+ R ESRGLHY +D+P +
Sbjct: 471 QQETHEY-----YSNFRVSNNLLEMRNLLQVAELMVRCAMQRKESRGLHYTLDYPD-QLA 524
Query: 615 KRLPTIILP 623
+ PTI++P
Sbjct: 525 ESGPTILVP 533
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q8ZD80|NADB_YERPE L-aspartate oxidase OS=Yersinia pestis GN=nadB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 236/548 (43%), Positives = 320/548 (58%), Gaps = 32/548 (5%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D +IGSG AGL AL +A H V V++K +E T YAQGG++AV +DS+ SH+ D
Sbjct: 10 DVLIIGSGAAGLSLALRLAPHCKVTVLSKGPLNEGATFYAQGGIAAVFDETDSISSHVDD 69
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN----LHLAREGGHSHHRI 199
T++AGA LCD E V + + ++ LI G FD N HL REGGHSH RI
Sbjct: 70 TLIAGAGLCDKEAVEFIASNARSCVQWLIDQGVLFDTETSANGEERYHLTREGGHSHRRI 129
Query: 200 VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT----LDGPDAVCHGVDTLNVE 255
+H AD TG+E+E L+ + PNISV E A+DL+T+ L G V G N E
Sbjct: 130 LHTADATGKEVETTLVGKASNHPNISVKERCNAVDLITSNKIGLAGTKRVV-GAYVWNRE 188
Query: 256 TQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315
++V F +K +LA+GGA +Y TTNP +++GDG+AMA RA ++N+EF QFHPT L
Sbjct: 189 LEKVETFRAKAVVLATGGAAKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTCL 248
Query: 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD 375
P+ +FL+TEA+RG+G L RFM +D R ELAPRD+VAR+ID
Sbjct: 249 ------FHPQA---RNFLLTEALRGEGAYLKRPDGSRFMLDFDPRGELAPRDIVARAIDH 299
Query: 376 QLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRA 435
++K+ + LDISHKPT+ ++ HFP I + L G+D+T + IP+VPAAHY CGGV
Sbjct: 300 EMKRLGADCMYLDISHKPTDFVMQHFPMIYEKLLSLGIDLTKEAIPIVPAAHYTCGGVMV 359
Query: 436 GLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSA 495
G T++ GLY GEV+ TGLHGANR+ASNSLLE LV+ A + + + +
Sbjct: 360 DQHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDILTRLPTAKLAKHL 419
Query: 496 SNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELE 555
+W V + HN EL+ MW YVGIVR+T L+ A RI+ L+
Sbjct: 420 PDWDESRVDNSDERVVIQHNW--------HELRLFMWDYVGIVRTTKRLERALRRINTLQ 471
Query: 556 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 615
E + Y + + E+RNL A+L+V A+ R ESRGLHY +D+P EN
Sbjct: 472 QEIDEY-----YANFRISNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPDQIENP 526
Query: 616 RLPTIILP 623
+ PTI+ P
Sbjct: 527 Q-PTILHP 533
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Yersinia pestis (taxid: 632) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q8ZMX9|NADB_SALTY L-aspartate oxidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 242/567 (42%), Positives = 326/567 (57%), Gaps = 43/567 (7%)
Query: 66 LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQG 125
+ T P LSC D +IGSG AGL AL +A+ V V++K E +T YAQG
Sbjct: 1 MMTTPELSC---------DVLIIGSGAAGLSLALRLAEKHKVIVLSKGPVSEGSTFYAQG 51
Query: 126 GVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN 185
G++AV +DS+ SH++DT++AGA +CD V V + ++ LI G FD N
Sbjct: 52 GIAAVFDETDSIASHVEDTLIAGAGICDRHAVEFVASNARTCVQWLIDQGVLFDTHVQPN 111
Query: 186 ----LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT--- 238
HL REGGHSH RI+HAAD TG+E+E L+ + PNI V E A+DL+ +
Sbjct: 112 GKESYHLTREGGHSHRRILHAADATGKEVETTLVSRAQNHPNIQVLERSNAVDLIISDKM 171
Query: 239 -LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHR 297
L GP V G N + V +K +LA+GGA +Y TTNP +++GDG+AMA R
Sbjct: 172 GLPGPRRVV-GAWIWNRNKEWVETCHAKSVVLATGGASKVYQYTTNPDISSGDGIAMAWR 230
Query: 298 AQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY 357
A ++N+EF QFHPTAL + +FL+TEA+RG+G L RFMP
Sbjct: 231 AGCRVANLEFNQFHPTAL---------YHPQARNFLLTEALRGEGAYLKRPDGSRFMPDV 281
Query: 358 DERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITS 417
DER ELAPRD+VAR+ID ++K+ + LDISHKP + + HFP I A+ L G+D+T
Sbjct: 282 DERGELAPRDIVARAIDHEMKQLGADCMFLDISHKPDDFVRQHFPMIYAKLLDLGMDLTK 341
Query: 418 QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR 477
+PIPVVPAAHY CGGV G T+V GLY GEV+ TGLHGANR+ASNSLLE LV+
Sbjct: 342 EPIPVVPAAHYTCGGVVVDDYGRTDVDGLYAIGEVSYTGLHGANRMASNSLLECLVYGWS 401
Query: 478 AVQPSIDHKKSTSIDLSASNWWTRTVVPKS-LGCNVMHNILRRTKEVRKELQSIMWRYVG 536
A ID + + + A W + V + + HN EL+ +MW YVG
Sbjct: 402 AAM-DIDRRMPSVHSVDALPAWDESRVENADERVVIQHNW--------HELRLLMWDYVG 452
Query: 537 IVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596
IVR+T L+ A RI L+ E + Y + V E+RNL A+L+V A+ R
Sbjct: 453 IVRTTKRLERALRRITMLQQEIDEY-----YANFRVSNNLLELRNLVQVAELIVRCAMMR 507
Query: 597 HESRGLHYMVDFPHVEENKRLPTIILP 623
ESRGLH+ +D+P + + P+I+ P
Sbjct: 508 KESRGLHFTLDYPQ-QLAESGPSILSP 533
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|P10902|NADB_ECOLI L-aspartate oxidase OS=Escherichia coli (strain K12) GN=nadB PE=1 SV=4 | Back alignment and function description |
|---|
Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/568 (42%), Positives = 328/568 (57%), Gaps = 45/568 (7%)
Query: 66 LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQG 125
+ T+P SC D +IGSG AGL AL +A V V++K E +T YAQG
Sbjct: 1 MNTLPEHSC---------DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQG 51
Query: 126 GVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFD-----R 180
G++AV +DS++SH++DT++AGA +CD V V + ++ LI G FD
Sbjct: 52 GIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPN 111
Query: 181 GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT-- 238
GE+ + HL REGGHSH RI+HAAD TGRE+E L+ ++ PNI V E A+DL+ +
Sbjct: 112 GEE-SYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVSDK 170
Query: 239 --LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAH 296
L G V G N + V +K +LA+GGA +Y TTNP +++GDG+AMA
Sbjct: 171 IGLPGTRRVV-GAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAW 229
Query: 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL 356
RA ++N+EF QFHPTAL + +FL+TEA+RG+G L RFMP
Sbjct: 230 RAGCRVANLEFNQFHPTAL---------YHPQARNFLLTEALRGEGAYLKRPDGTRFMPD 280
Query: 357 YDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDIT 416
+DER ELAPRD+VAR+ID ++K+ + LDISHKP + I HFP I + L G+D+T
Sbjct: 281 FDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLT 340
Query: 417 SQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 476
+P+P+VPAAHY CGGV G T+V GLY GEV+ TGLHGANR+ASNSLLE LV+
Sbjct: 341 QEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGW 400
Query: 477 RAVQPSIDHKKSTSIDLSASNWWTRTVVPK-SLGCNVMHNILRRTKEVRKELQSIMWRYV 535
A + I + + D+S W + V + HN EL+ MW YV
Sbjct: 401 SAAE-DITRRMPYAHDISTLPPWDESRVENPDERVVIQHNW--------HELRLFMWDYV 451
Query: 536 GIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALA 595
GIVR+T L+ A RI L+ E + Y + V E+RNL A+L+V A+
Sbjct: 452 GIVRTTKRLERALRRITMLQQEIDEY-----YAHFRVSNNLLELRNLVQVAELIVRCAMM 506
Query: 596 RHESRGLHYMVDFPHVEENKRLPTIILP 623
R ESRGLH+ +D+P + + P+I+ P
Sbjct: 507 RKESRGLHFTLDYPELLTHSG-PSILSP 533
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Escherichia coli (strain K12) (taxid: 83333) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q8Z4K0|NADB_SALTI L-aspartate oxidase OS=Salmonella typhi GN=nadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 242/568 (42%), Positives = 327/568 (57%), Gaps = 45/568 (7%)
Query: 66 LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQG 125
+ T P LSC D +IGSG AGL AL +A+ V V++K E +T YAQG
Sbjct: 1 MMTTPELSC---------DVLIIGSGAAGLSLALRLAEKHKVIVLSKGPVSEGSTFYAQG 51
Query: 126 GVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN 185
G++AV +DS+ SH++DT++AGA +CD V V + ++ LI G FD N
Sbjct: 52 GIAAVFDETDSIASHVEDTLIAGAGICDRHAVEFVASNARTCVQWLIDQGVLFDTHVQPN 111
Query: 186 ----LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT--- 238
HL REGGHSH RI+HAAD TG+E+E L+ + PNI V E A+DL+ +
Sbjct: 112 GKESYHLTREGGHSHRRILHAADATGKEVETTLVSRAQNHPNIQVLERSNAVDLIISDKI 171
Query: 239 -LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHR 297
L GP V G N + V +K +LA+GGA +Y TTNP +++GDG+AMA R
Sbjct: 172 GLPGPRRVV-GAWIWNRNKEWVETCHAKSVVLATGGASKVYQYTTNPDISSGDGIAMAWR 230
Query: 298 AQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY 357
A ++N+EF QFHPTAL + +FL+TEA+RG+G L RFMP
Sbjct: 231 AGCRVANLEFNQFHPTAL---------YHPQARNFLLTEALRGEGAYLKRPDGSRFMPDV 281
Query: 358 DERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITS 417
DER ELAPRD+VAR+ID ++K+ + LDISHKP + + HFP I A+ L G+D+T
Sbjct: 282 DERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPDDFVRQHFPMIYAKLLDLGMDLTK 341
Query: 418 QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR 477
+PIP+VPAAHY CGGV G T+V GLY GEV+ TGLHGANR+ASNSLLE LV+
Sbjct: 342 EPIPIVPAAHYTCGGVVVDDYGRTDVDGLYAIGEVSYTGLHGANRMASNSLLECLVYGWS 401
Query: 478 AVQPSIDHKKST--SIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYV 535
A ID + + S+D+ + W V + HN EL+ +MW YV
Sbjct: 402 AAM-DIDRRMPSVHSVDVLPA-WDESRVENADERVVIQHNW--------HELRLLMWDYV 451
Query: 536 GIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALA 595
GIVR+T L+ A RI L+ E + Y + V E+RNL A+L+V A+
Sbjct: 452 GIVRTTKRLERALRRITMLQQEIDEY-----YANFRVSNNLLELRNLVQVAELIVRCAMM 506
Query: 596 RHESRGLHYMVDFPHVEENKRLPTIILP 623
R ESRGLH+ +D+P + + P+I+ P
Sbjct: 507 RKESRGLHFTLDYPQ-QLAESGPSILSP 533
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Salmonella typhi (taxid: 90370) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q8XA23|NADB_ECO57 L-aspartate oxidase OS=Escherichia coli O157:H7 GN=nadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust.
Identities = 235/550 (42%), Positives = 322/550 (58%), Gaps = 36/550 (6%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D +IGSG AGL AL +A V V++K E +T YAQGG++AV +DS++SH++D
Sbjct: 10 DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVED 69
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFD-----RGEDGNLHLAREGGHSHHR 198
T++AGA +CD V V + ++ LI G FD GE+ + HL REGGHSH R
Sbjct: 70 TLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEE-SYHLTREGGHSHRR 128
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT----LDGPDAVCHGVDTLNV 254
I+HAAD TGRE+E L+ ++ PNI V E A+DL+ + L G V G N
Sbjct: 129 ILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIISDKIGLPGTRRVV-GAWVWNR 187
Query: 255 ETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
++V +K +LA+GGA +Y TTNP +++GDG+AMA RA ++N+EF QFHPTA
Sbjct: 188 NKEKVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTA 247
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 374
L + +FL+TEA+RG+G L RFMP +D R ELAPRD+VAR+ID
Sbjct: 248 L---------YHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDVRGELAPRDIVARAID 298
Query: 375 DQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVR 434
++K+ + LDISHKP + I HFP I + L G+D+T +P+P+VPAAHY CGGV
Sbjct: 299 HEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGVM 358
Query: 435 AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS 494
G T+V GLY GEV+ TGLHGANR+ASNSLLE LV+ A + I + + D+S
Sbjct: 359 VDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAE-DITRRMPYAHDIS 417
Query: 495 ASNWWTRTVVPK-SLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDE 553
W + V + HN EL+ MW YVGIVR+T L+ A RI
Sbjct: 418 TLPPWDESRVENPDERVIIQHNW--------HELRLFMWDYVGIVRTTKRLERALRRITM 469
Query: 554 LEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEE 613
L+ E + Y + V E+RNL A+L+V A+ R ESRGLH+ +D+P +
Sbjct: 470 LQQEIDEY-----YAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLT 524
Query: 614 NKRLPTIILP 623
+ P+I+ P
Sbjct: 525 HSG-PSILSP 533
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Escherichia coli O157:H7 (taxid: 83334) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q8XQG4|NADB2_RALSO L-aspartate oxidase 2 OS=Ralstonia solanacearum (strain GMI1000) GN=nadB2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 222/550 (40%), Positives = 305/550 (55%), Gaps = 41/550 (7%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
FD V+G G+A L L + + VI++ + E ++ +AQGG+SAV D + H++
Sbjct: 15 FDVLVVGEGLAALTLLLHLPPSLKIGVISRNKYDEPSSYWAQGGISAVFSTDDDHDKHIR 74
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT++AG LCD+ VR + EG D +R LI G F R EDG +HL REGGHS R+ H
Sbjct: 75 DTLLAGDGLCDEAAVRQIVCEGGDVLRWLIDQGVPFTR-EDGEIHLTREGGHSERRVAHV 133
Query: 203 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF 262
DMTGR I RAL V PN+ + A++LL+ DG GV ++ EV F
Sbjct: 134 DDMTGRGIMRALQAKVAQLPNVIWIRQYEAVELLS--DGQ--AVSGVIAESLADGEVTVF 189
Query: 263 ISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322
+ +LA+GG +Y TNP + G+ +AMA RA A I N+EFVQFHPTA EG I
Sbjct: 190 SAPTVVLAAGGLTGLYQYATNPHASKGEAIAMAWRAGATIENLEFVQFHPTAFQIEGRVI 249
Query: 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE 382
LITEAVRG+GG+LYN+ ERFMP Y + ELAPRDVVAR+I +++
Sbjct: 250 S---------LITEAVRGEGGLLYNVANERFMPGYSSQQELAPRDVVARAIYSEMQAHGT 300
Query: 383 KYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETN 442
+V LDI+H+ T + HFPN+ +G D++ +PV PAAHY CGG+ A + G TN
Sbjct: 301 SHVWLDITHQGTAFVEQHFPNLVEITRAHGCDLSQHRVPVSPAAHYTCGGIGADVAGRTN 360
Query: 443 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRT 502
+ GLY GEVA GLHGANRLASNSLLE +V + Q D S S R
Sbjct: 361 IEGLYAIGEVANCGLHGANRLASNSLLECVVMGKACAQSVTDTAGSAS--------RLRL 412
Query: 503 VVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL 562
+P+ + N+L +L++I+W + GIVRS T L+ + +L+ E +
Sbjct: 413 TLPERIETPFHPNLL-------ADLRAILWNHAGIVRSNTGLEIGLQNMAQLQ-ERHASV 464
Query: 563 FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622
+G +A +N+F A LV+ SA AR ESRG H+ D E + T +
Sbjct: 465 LPYG--------QALRAQNIFDAAHLVLLSAAARKESRGGHFNKDHADKAEAQ---TTQI 513
Query: 623 PSLVNCTWSS 632
P + W++
Sbjct: 514 PGVPVNFWAA 523
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q9K107|NADB_NEIMB L-aspartate oxidase OS=Neisseria meningitidis serogroup B (strain MC58) GN=nadB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 216/525 (41%), Positives = 300/525 (57%), Gaps = 30/525 (5%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D + G+G+A L AL + + + ++ K ++ + +AQGG++A D +E H+ D
Sbjct: 6 DVLIAGNGLAALTLALSLPESFRIVILCKNRLDDTASRHAQGGIAAAWSGEDDIEKHVAD 65
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA 203
T+ AGA LCD+ VR + ++G I L+A G +FDR +G LHL REGGH+ RI H A
Sbjct: 66 TLEAGAGLCDEAAVRAILSQGKPAIEWLLAQGVAFDRNHNG-LHLTREGGHTCRRIAHVA 124
Query: 204 DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI 263
D TG + ++L+ + PNI V E A+D+ T A C G+ L+ TQE R
Sbjct: 125 DYTGEAVMQSLIAQIRRRPNIRVCERQMALDIQTE---SGAAC-GLTVLDCRTQETYRIR 180
Query: 264 SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 323
++ T+LA GG G IY +TT P TGD +AMA RA + N+EF+QFHPT LA +
Sbjct: 181 ARHTVLAGGGLGQIYAATTTPPECTGDAIAMAIRAGCAVGNLEFIQFHPTGLA------R 234
Query: 324 PKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEK 383
P + +FLI+EAVRG+GGIL N ERFMP YD RAELAPRD+VAR+I ++ K+ +
Sbjct: 235 PSEN-GRTFLISEAVRGEGGILTNQAGERFMPHYDRRAELAPRDIVARAIAAEIAKQTQD 293
Query: 384 YVLLDISHKPTEKILSHFPNIAAECL-KYGLDITSQPIPVVPAAHYMCGGVRAGLQGETN 442
+V LDISH+P + HFP+I CL + GLDIT Q IPV P HY CGG++ G T+
Sbjct: 294 FVSLDISHQPAAFVRRHFPSIHRHCLSQCGLDITRQAIPVRPVQHYTCGGIQTDPCGRTS 353
Query: 443 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRT 502
+ LY GE ACTGLHGANRLASNSLLE +V AR Q D + + + R
Sbjct: 354 LPQLYALGETACTGLHGANRLASNSLLECVVTARLCAQAIADGQAFQ------AEPFQRP 407
Query: 503 VVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL 562
S + + L+ T R LQ+ R++GI+R+ T L+ A I +L+ W+
Sbjct: 408 SESLSAEAGIFSDDLQNTFS-RPVLQTFNQRHLGILRNDTGLRRA---IAQLQL-WKQNQ 462
Query: 563 FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 607
E + E RNL C+ V +A R ++ G H+ D
Sbjct: 463 AEPHTASEY------ENRNLLECSLAVAQAAYRRRQNIGAHFNSD 501
|
Catalyzes the oxidation of L-aspartate to iminoaspartate. Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586) EC: 1 EC: . EC: 4 EC: . EC: 3 EC: . EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 641 | ||||||
| 225452458 | 647 | PREDICTED: L-aspartate oxidase 1-like [V | 0.992 | 0.982 | 0.826 | 0.0 | |
| 224055531 | 601 | predicted protein [Populus trichocarpa] | 0.925 | 0.986 | 0.877 | 0.0 | |
| 255552562 | 655 | l-aspartate oxidase, putative [Ricinus c | 0.992 | 0.970 | 0.796 | 0.0 | |
| 449483753 | 646 | PREDICTED: L-aspartate oxidase-like [Cuc | 0.996 | 0.989 | 0.768 | 0.0 | |
| 449450109 | 646 | PREDICTED: L-aspartate oxidase-like [Cuc | 0.996 | 0.989 | 0.766 | 0.0 | |
| 356511664 | 647 | PREDICTED: L-aspartate oxidase 1-like [G | 0.995 | 0.986 | 0.752 | 0.0 | |
| 18417469 | 651 | L-aspartate oxidase [Arabidopsis thalian | 0.967 | 0.952 | 0.771 | 0.0 | |
| 357496009 | 645 | L-aspartate oxidase [Medicago truncatula | 0.990 | 0.984 | 0.737 | 0.0 | |
| 297807493 | 641 | L-aspartate oxidase [Arabidopsis lyrata | 0.968 | 0.968 | 0.756 | 0.0 | |
| 270342121 | 667 | L-aspartate oxidase [Phaseolus vulgaris] | 0.995 | 0.956 | 0.740 | 0.0 |
| >gi|225452458|ref|XP_002274361.1| PREDICTED: L-aspartate oxidase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1092 bits (2825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/644 (82%), Positives = 573/644 (88%), Gaps = 8/644 (1%)
Query: 1 MATGVAARTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELS---WF---LRFQRFNF 54
M T VAA +S HF C+GQSC QAS VS +TF GC Q+ LS W L+ QR NF
Sbjct: 1 MTTAVAAGSSKLHFRETVCRGQSCGQASWVSGVTFKGCPQKGLSGSSWVSKVLQIQRRNF 60
Query: 55 SHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAE 114
S +++NWK LR V S L+DGSVKYFDF+VIGSGVAGL YALEVAKHG+VAVITKAE
Sbjct: 61 RQSSINDNWKPLRAVSA-SYLKDGSVKYFDFAVIGSGVAGLRYALEVAKHGSVAVITKAE 119
Query: 115 PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAI 174
PHESNTNYAQGGVSAVLCP DSVESHM+DTI+AGAYLCD+ETVRVVCTEGPDRIRELIA+
Sbjct: 120 PHESNTNYAQGGVSAVLCPLDSVESHMRDTIIAGAYLCDEETVRVVCTEGPDRIRELIAM 179
Query: 175 GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234
GASFD GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVV+DPNI +FEHHFAID
Sbjct: 180 GASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVNDPNIFMFEHHFAID 239
Query: 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
LLT+ DG D VCHGVDTLN ETQEVVRFI+KV LLASGGAGHIYP+TTNPLVATGDG+AM
Sbjct: 240 LLTSQDGSDTVCHGVDTLNTETQEVVRFIAKVILLASGGAGHIYPTTTNPLVATGDGIAM 299
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
AHRAQAVISNMEFVQFHPTALADEGLPI P KTREN+FLITEAVRGDGGILYNL MERFM
Sbjct: 300 AHRAQAVISNMEFVQFHPTALADEGLPITPAKTRENAFLITEAVRGDGGILYNLSMERFM 359
Query: 355 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 414
PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP EKILSHFPNIAAECLKYGLD
Sbjct: 360 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPKEKILSHFPNIAAECLKYGLD 419
Query: 415 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
IT QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF
Sbjct: 420 ITRQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 479
Query: 475 ARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRY 534
ARRAVQPSIDH ++++DLSASNWW VVP SLG N+M+++L T++VRKELQSIMW+Y
Sbjct: 480 ARRAVQPSIDHMSNSTLDLSASNWWAEPVVPTSLGSNIMNDVLSGTRKVRKELQSIMWKY 539
Query: 535 VGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
VGIVRST L+TAE RI ELEA+WE YLF+ GWE T VGLEACEMRNLFCCAKLVVSSAL
Sbjct: 540 VGIVRSTRRLKTAEQRIAELEAKWEQYLFQQGWEPTMVGLEACEMRNLFCCAKLVVSSAL 599
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTIILP-SLVNCTWSSRQLHK 637
ARHESRGLHY +DFPH+ E+KRLPT+I P S +N TWSSRQLH
Sbjct: 600 ARHESRGLHYTIDFPHLVESKRLPTVIFPCSPMNGTWSSRQLHN 643
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055531|ref|XP_002298525.1| predicted protein [Populus trichocarpa] gi|222845783|gb|EEE83330.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/596 (87%), Positives = 551/596 (92%), Gaps = 3/596 (0%)
Query: 43 LSWFLRFQRFNFSHSPVSENWKSL--RTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALE 100
LS L+FQR+ FS S +S+NWK L R V V SCLRD +VKYFDF+VIGSGVAGL YALE
Sbjct: 6 LSKLLQFQRYKFSRSTISKNWKPLGTRKVSVSSCLRDSTVKYFDFAVIGSGVAGLRYALE 65
Query: 101 VAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160
VAK+GTVAVITKAEPHESNTNYAQGGVSAVL PSDSVESHMQDT+VAGAYLCD+ETVRVV
Sbjct: 66 VAKYGTVAVITKAEPHESNTNYAQGGVSAVLSPSDSVESHMQDTMVAGAYLCDEETVRVV 125
Query: 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVS 220
CTEGPDRIRELIA+GA FD GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVV+
Sbjct: 126 CTEGPDRIRELIAMGAMFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVN 185
Query: 221 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPS 280
DPNISVFEHHFAIDLLT+ DGPD VCHGVDTLN ETQ+VVRFISKVTLLASGGAGHIYPS
Sbjct: 186 DPNISVFEHHFAIDLLTSQDGPDMVCHGVDTLNTETQQVVRFISKVTLLASGGAGHIYPS 245
Query: 281 TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRG 340
TTNP VATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKP K REN+FLITEAVRG
Sbjct: 246 TTNPPVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPIKARENAFLITEAVRG 305
Query: 341 DGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSH 400
DGGILYNL ERFMPLYDERAELAPRDVVARSIDDQLKKR EKYVLLDISHKP EKILSH
Sbjct: 306 DGGILYNLDWERFMPLYDERAELAPRDVVARSIDDQLKKRCEKYVLLDISHKPREKILSH 365
Query: 401 FPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGA 460
FPNIAAECL+YGLDIT QPIPVVPAAHYMCGGVRAGLQGETNV+GLYVAGEVACTGLHGA
Sbjct: 366 FPNIAAECLQYGLDITRQPIPVVPAAHYMCGGVRAGLQGETNVQGLYVAGEVACTGLHGA 425
Query: 461 NRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRT 520
NRLASNSLLEALVFARRAVQPSIDH KS+S+DLSASNWW R VVP S G NVM N+ R+T
Sbjct: 426 NRLASNSLLEALVFARRAVQPSIDHMKSSSLDLSASNWWARPVVPNSPGSNVMDNVSRKT 485
Query: 521 KEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMR 580
+EVR+ELQSIMW+YVGIVRSTT L+TAE I ELEA+WE YLFE GWEQT VGLEACEMR
Sbjct: 486 REVRRELQSIMWKYVGIVRSTTRLETAEGEISELEAQWEKYLFEEGWEQTMVGLEACEMR 545
Query: 581 NLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILPSLV-NCTWSSRQL 635
NLFCCAKLVVSSALARHESRGLHY +DFPHVEE+KRLPT+ILPSLV N TWSSRQL
Sbjct: 546 NLFCCAKLVVSSALARHESRGLHYTIDFPHVEESKRLPTVILPSLVNNNTWSSRQL 601
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552562|ref|XP_002517324.1| l-aspartate oxidase, putative [Ricinus communis] gi|223543335|gb|EEF44866.1| l-aspartate oxidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/644 (79%), Positives = 567/644 (88%), Gaps = 8/644 (1%)
Query: 1 MATGVAARTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSW------FLRFQRFNF 54
MAT VAA N +G +C+ Q Q + +S++ FNGC+Q+ELSW + Q +N
Sbjct: 1 MATSVAAFGGNLQYGLQKCRVQGWIQNAGISNVAFNGCLQKELSWSCGVSKIFQIQNYNI 60
Query: 55 SHSPVSENWKSL--RTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITK 112
S + ++ KS+ R + + SCLRD S KYFDF VIGSGVAGL YALEVA+HGTVAVITK
Sbjct: 61 PQSTIGKHCKSIGTRRINISSCLRDESTKYFDFVVIGSGVAGLRYALEVAEHGTVAVITK 120
Query: 113 AEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELI 172
AEPHESNTNYAQGGVSAVLCP DSVESHMQDTIVAGAYLCD+ETVR+VCTEGPDRIRELI
Sbjct: 121 AEPHESNTNYAQGGVSAVLCPLDSVESHMQDTIVAGAYLCDEETVRIVCTEGPDRIRELI 180
Query: 173 AIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232
++G +FD GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAV +DPNI++FEH FA
Sbjct: 181 SMGVTFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVDNDPNITMFEHQFA 240
Query: 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 292
IDLLT+ DGPD VCHGVDT+N ET+EVVRFISKVTLLASGGAGHIYP+TTNP VATGDG+
Sbjct: 241 IDLLTSQDGPDTVCHGVDTINTETEEVVRFISKVTLLASGGAGHIYPTTTNPPVATGDGI 300
Query: 293 AMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMER 352
AMAHRAQAVISNMEFVQFHPTALADEGLPI+P K REN+FLITEAVRGDGG+LYNLGMER
Sbjct: 301 AMAHRAQAVISNMEFVQFHPTALADEGLPIQPSKARENAFLITEAVRGDGGVLYNLGMER 360
Query: 353 FMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYG 412
FMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP EKILSHFPNIAAECLKYG
Sbjct: 361 FMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREKILSHFPNIAAECLKYG 420
Query: 413 LDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 472
LDIT QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL
Sbjct: 421 LDITLQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 480
Query: 473 VFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMW 532
VFARRAV+PSIDH S+ +DLSASNWW R V+P SL +V+ +IL+ T ++RKELQS+MW
Sbjct: 481 VFARRAVEPSIDHMMSSKLDLSASNWWARPVMPSSLRSSVIDDILKTTAKLRKELQSVMW 540
Query: 533 RYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSS 592
+YVGIVRSTT L+TA+ +I ELE+EWE +LFE GWEQT VGLEACEMRNLFCCAKLVVSS
Sbjct: 541 KYVGIVRSTTRLETADRKIKELESEWEKHLFEQGWEQTMVGLEACEMRNLFCCAKLVVSS 600
Query: 593 ALARHESRGLHYMVDFPHVEENKRLPTIILPSLVNCTWSSRQLH 636
A+AR ESRGLHY DFP VEE+KRLPTII PS +N TWSSRQLH
Sbjct: 601 AMARQESRGLHYTTDFPDVEESKRLPTIIFPSPLNSTWSSRQLH 644
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483753|ref|XP_004156680.1| PREDICTED: L-aspartate oxidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/647 (76%), Positives = 543/647 (83%), Gaps = 8/647 (1%)
Query: 1 MATGVAARTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRE------LSWFLRFQRFNF 54
MA + + + KGQ C++A +S+ F C+Q E LS F R
Sbjct: 1 MAICIPVGSCKLFCRAVDLKGQGCRRAQWDASVAFKRCLQDEFSRSCELSKFSHVYRSKA 60
Query: 55 SHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAE 114
S + + W++L V +CL DGS KYFDF VIGSGVAGL YALEVAK G+VAVITKAE
Sbjct: 61 SQPIICKKWRTLTAV-TSACLSDGSTKYFDFVVIGSGVAGLRYALEVAKCGSVAVITKAE 119
Query: 115 PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAI 174
PHESNTNYAQGGVSAVLCPSDSVESH+QDTIVAGA+LCD+ETVRVVCTEGPDRI+ELIA+
Sbjct: 120 PHESNTNYAQGGVSAVLCPSDSVESHVQDTIVAGAHLCDEETVRVVCTEGPDRIKELIAM 179
Query: 175 GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234
GASFD GEDGNLHLAREGGHSH RIVHAADMTGREIERALLEAVV DPNI VFEHHFAID
Sbjct: 180 GASFDHGEDGNLHLAREGGHSHRRIVHAADMTGREIERALLEAVVRDPNIFVFEHHFAID 239
Query: 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
LLT+ DG D VC GVDTLN ET EV RFISKVTLLASGGAGH+YPSTTNP VATGDG+AM
Sbjct: 240 LLTSEDGSDIVCVGVDTLNAETLEVTRFISKVTLLASGGAGHMYPSTTNPPVATGDGIAM 299
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
+HRAQAVISNMEFVQFHPTALADEGLP++ +K R+N+FLITEAVRGDGGILYNL MERFM
Sbjct: 300 SHRAQAVISNMEFVQFHPTALADEGLPVRLEKPRDNAFLITEAVRGDGGILYNLSMERFM 359
Query: 355 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 414
PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP E ILSHFPNIAAECLK+GLD
Sbjct: 360 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPRESILSHFPNIAAECLKHGLD 419
Query: 415 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
IT QPIPVVPAAHY+CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF
Sbjct: 420 ITCQPIPVVPAAHYICGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 479
Query: 475 ARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRY 534
ARRAV+PS+DH +++S+D SA N W R VP SLG + M I+ TK+VRK+LQ IMW+Y
Sbjct: 480 ARRAVEPSVDHMRNSSLDSSALNRWARPFVPVSLGNDFMSRIISMTKDVRKQLQLIMWKY 539
Query: 535 VGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
VGIVRSTT L+TAE +I ELEA WE YLF GWE T VGLE CEMRNLFCCAKLVVSSAL
Sbjct: 540 VGIVRSTTRLETAERKISELEATWEEYLFHQGWEPTMVGLEVCEMRNLFCCAKLVVSSAL 599
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTIILP-SLVNCTWSSRQLHKLPV 640
AR ESRGLHY +DFPH+EE+KRLPTII P S TWSSRQLH PV
Sbjct: 600 ARQESRGLHYTIDFPHLEESKRLPTIIFPCSPTKSTWSSRQLHWQPV 646
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450109|ref|XP_004142806.1| PREDICTED: L-aspartate oxidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/647 (76%), Positives = 543/647 (83%), Gaps = 8/647 (1%)
Query: 1 MATGVAARTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRE------LSWFLRFQRFNF 54
MA + + + KGQ C++A +S+ F C+Q E LS F R
Sbjct: 1 MAICIPVGSCKLFCRAVDLKGQGCRRAQWDASVAFKRCLQDEFSRSCELSKFSHVYRSKA 60
Query: 55 SHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAE 114
S + + W++L V +CL DGS KYFDF VIGSGVAGL YALEVAK G+VAVITKAE
Sbjct: 61 SQPIICKKWRTLTAV-TSACLSDGSTKYFDFVVIGSGVAGLRYALEVAKCGSVAVITKAE 119
Query: 115 PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAI 174
PHESNTNYAQGGVSAVLCPSDSVESH+QDTIVAGA+LC++ETVRVVCTEGPDRI+ELIA+
Sbjct: 120 PHESNTNYAQGGVSAVLCPSDSVESHVQDTIVAGAHLCNEETVRVVCTEGPDRIKELIAM 179
Query: 175 GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234
GASFD GEDGNLHLAREGGHSH RIVHAADMTGREIERALLEAVV DPNI VFEHHFAID
Sbjct: 180 GASFDHGEDGNLHLAREGGHSHRRIVHAADMTGREIERALLEAVVRDPNIFVFEHHFAID 239
Query: 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
LLT+ DG D VC GVDTLN ET EV RFISKVTLLASGGAGH+YPSTTNP VATGDG+AM
Sbjct: 240 LLTSEDGSDIVCVGVDTLNAETLEVTRFISKVTLLASGGAGHMYPSTTNPPVATGDGIAM 299
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
+HRAQAVISNMEFVQFHPTALADEGLP++ +K R+N+FLITEAVRGDGGILYNL MERFM
Sbjct: 300 SHRAQAVISNMEFVQFHPTALADEGLPVRLEKPRDNAFLITEAVRGDGGILYNLSMERFM 359
Query: 355 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 414
PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP E ILSHFPNIAAECLK+GLD
Sbjct: 360 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPRESILSHFPNIAAECLKHGLD 419
Query: 415 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
IT QPIPVVPAAHY+CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF
Sbjct: 420 ITCQPIPVVPAAHYICGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 479
Query: 475 ARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRY 534
ARRAV+PS+DH +++S+D SA N W R VP SLG + M I+ TK+VRK+LQ IMW+Y
Sbjct: 480 ARRAVEPSVDHMRNSSLDSSALNRWARPFVPVSLGNDFMSRIISMTKDVRKQLQLIMWKY 539
Query: 535 VGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
VGIVRSTT L+TAE +I ELEA WE YLF GWE T VGLE CEMRNLFCCAKLVVSSAL
Sbjct: 540 VGIVRSTTRLETAERKISELEATWEEYLFHQGWEPTMVGLEVCEMRNLFCCAKLVVSSAL 599
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTIILP-SLVNCTWSSRQLHKLPV 640
AR ESRGLHY +DFPH+EE+KRLPTII P S TWSSRQLH PV
Sbjct: 600 ARQESRGLHYTIDFPHLEESKRLPTIIFPCSPTKSTWSSRQLHWQPV 646
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511664|ref|XP_003524543.1| PREDICTED: L-aspartate oxidase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/647 (75%), Positives = 547/647 (84%), Gaps = 9/647 (1%)
Query: 1 MATGVAARTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSW------FLRFQRFNF 54
MAT V A + H+G CKG S ++++ S + G +Q++LSW L+ R F
Sbjct: 1 MATCVPAVSGALHYGVTNCKGHSYRRSASFSDVPNTGFLQKDLSWSKVVSKVLQIHRCGF 60
Query: 55 SHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAE 114
S P+ ++ K + + S +D KYFDF VIGSG+AGL YALEVAK+G+VAVITKAE
Sbjct: 61 SAPPLHKDQKLFKVIS--SWKKDSPTKYFDFIVIGSGIAGLRYALEVAKYGSVAVITKAE 118
Query: 115 PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAI 174
HE NTNYAQGGVSAVLCPSDSVESH++DTIVAGAYLCD+E+VRVVCTEGP+R+RELIA+
Sbjct: 119 SHECNTNYAQGGVSAVLCPSDSVESHIKDTIVAGAYLCDEESVRVVCTEGPERVRELIAM 178
Query: 175 GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234
GASFD GEDGNLHL REGGHSHHRIVHAADMTG+EIERALL+ V+S+P I VFEHHFAID
Sbjct: 179 GASFDHGEDGNLHLMREGGHSHHRIVHAADMTGKEIERALLKEVISNPRIFVFEHHFAID 238
Query: 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
LLT D D +C GVDTLN +T EV+RF+SKVTLLASGGAGHIYP TTNPLVATGDG+AM
Sbjct: 239 LLTCQDRSDMICLGVDTLNSKTLEVIRFLSKVTLLASGGAGHIYPKTTNPLVATGDGIAM 298
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
AHRAQAVISNMEFVQFHPTALADEGLPIKP K REN+FLITEAVRGDGGILYN GMERFM
Sbjct: 299 AHRAQAVISNMEFVQFHPTALADEGLPIKPTKPRENAFLITEAVRGDGGILYNFGMERFM 358
Query: 355 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 414
PLYDERAELAPRDVVARSIDDQLKKR+EKYVLLDISHKP E+ILSHFPNIA+ CL+YGLD
Sbjct: 359 PLYDERAELAPRDVVARSIDDQLKKRHEKYVLLDISHKPKEEILSHFPNIASTCLQYGLD 418
Query: 415 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
IT +PIPVVPAAHYMCGGV+AGLQGETNV+GLYVAGEVACTGLHGANRLASNSLLEALVF
Sbjct: 419 ITRRPIPVVPAAHYMCGGVQAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVF 478
Query: 475 ARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRY 534
ARRAVQPS+DH K +S+DL+ASN W R VVP LG NV I+ TKE+R ELQSIMW Y
Sbjct: 479 ARRAVQPSVDHMKGSSLDLTASNLWPRPVVPLPLGSNVTDKIMSTTKELRAELQSIMWDY 538
Query: 535 VGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
VGIVRST L+TAE +I LEA+WE LF+HGW+ T VG E CEMRNLFCCAKLVVSSAL
Sbjct: 539 VGIVRSTMRLETAEQKIGSLEAKWEESLFQHGWKPTMVGPEICEMRNLFCCAKLVVSSAL 598
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTIILPSL-VNCTWSSRQLHKLPV 640
+RHESRGLHY VDFP++EE+KRLPTII PS VN TWSSRQLHK P+
Sbjct: 599 SRHESRGLHYTVDFPYLEESKRLPTIIFPSSPVNSTWSSRQLHKQPM 645
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18417469|ref|NP_568304.1| L-aspartate oxidase [Arabidopsis thaliana] gi|15010650|gb|AAK73984.1| AT5g14760/T9L3_60 [Arabidopsis thaliana] gi|24111279|gb|AAN46763.1| At5g14760/T9L3_60 [Arabidopsis thaliana] gi|332004691|gb|AED92074.1| L-aspartate oxidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/640 (77%), Positives = 544/640 (85%), Gaps = 20/640 (3%)
Query: 11 NFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSW------FLRFQR---FNFSHSPVSE 61
NF+ G +GQ+ S S+ TF +E SW L+ +R ++ SP+SE
Sbjct: 12 NFYLAGQVYRGQAF---SWSSASTFMANPFKEPSWSSGVFKALKAERCGCYSRGISPISE 68
Query: 62 NWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTN 121
K +R V V S S KY+DF+VIGSGVAGL YALEVAK GTVAVITK EPHESNTN
Sbjct: 69 TSKPIRAVSVSS-----STKYYDFTVIGSGVAGLRYALEVAKQGTVAVITKDEPHESNTN 123
Query: 122 YAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRG 181
YAQGGVSAVLCP DSVESHM+DT+VAGA+LCD+ETVRVVCTEGP+RIRELIA+GASFD G
Sbjct: 124 YAQGGVSAVLCPLDSVESHMRDTMVAGAHLCDEETVRVVCTEGPERIRELIAMGASFDHG 183
Query: 182 EDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241
EDGNLHLAREGGHSH RIVHAADMTGREIERALLEAV++DPNISVF+HHFAIDLLT+ DG
Sbjct: 184 EDGNLHLAREGGHSHCRIVHAADMTGREIERALLEAVLNDPNISVFKHHFAIDLLTSQDG 243
Query: 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAV 301
+ VCHGVDTLN++T EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAV
Sbjct: 244 LNTVCHGVDTLNIKTNEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAV 303
Query: 302 ISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA 361
ISNMEFVQFHPTALADEGLPIK + REN+FLITEAVRGDGGILYNLGMERFMP+YDERA
Sbjct: 304 ISNMEFVQFHPTALADEGLPIKLQTARENAFLITEAVRGDGGILYNLGMERFMPVYDERA 363
Query: 362 ELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIP 421
ELAPRDVVARSIDDQLKKRNEKYVLLDISHKP EKIL+HFPNIA+ECLK+GLDIT QPIP
Sbjct: 364 ELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREKILAHFPNIASECLKHGLDITRQPIP 423
Query: 422 VVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 481
VVPAAHYMCGGVRAGLQGETNV GL+VAGEVACTGLHGANRLASNSLLEALVFARRAVQP
Sbjct: 424 VVPAAHYMCGGVRAGLQGETNVLGLFVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 483
Query: 482 SIDHKKSTSIDLSASNWWTRTVVPKS--LGCNVMHNILRRTKEVRKELQSIMWRYVGIVR 539
S + K T +D+ AS WTR VV + LG V+ I+ TKEVR+ELQ +MW+YVGIVR
Sbjct: 484 STELMKRTRLDVCASEKWTRPVVATARLLGDEVIAKIIALTKEVRRELQEVMWKYVGIVR 543
Query: 540 STTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHES 599
ST L TAE +I ELEA+WET+LFEHGWEQT V LEACEMRNLFCCAKLVVSSALARHES
Sbjct: 544 STIRLTTAERKIAELEAKWETFLFEHGWEQTVVALEACEMRNLFCCAKLVVSSALARHES 603
Query: 600 RGLHYMVDFPHVEENKRLPTIILPSL-VNCTWSSRQLHKL 638
RGLHYM DFP VEE+KR+PTIILPS +WSSR+L +
Sbjct: 604 RGLHYMTDFPFVEESKRIPTIILPSSPTTASWSSRRLQNI 643
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357496009|ref|XP_003618293.1| L-aspartate oxidase [Medicago truncatula] gi|355493308|gb|AES74511.1| L-aspartate oxidase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/648 (73%), Positives = 543/648 (83%), Gaps = 13/648 (2%)
Query: 1 MATGVAARTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSW------FLRFQRFNF 54
MAT + A H+ KGQSC++ + VS ++ +Q++LSW L+ +
Sbjct: 1 MATCIPAGRGTLHYKVTDYKGQSCKKTACVSDVSIKRYLQKDLSWSKRVSKVLQIHKCEL 60
Query: 55 SHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAE 114
S SP+ +N R + + SC +DG KYFDF+VIGSG+AGL YALEVAK+GTVAVITKAE
Sbjct: 61 SRSPLRKN----RKLFISSCKKDGPTKYFDFAVIGSGIAGLRYALEVAKYGTVAVITKAE 116
Query: 115 PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAI 174
PHE NTNYAQGGVSAVL P DSVESHM+DTIVAGAYLCD+E+VRVVCTEGPDR+RELIA+
Sbjct: 117 PHECNTNYAQGGVSAVLSPLDSVESHMKDTIVAGAYLCDEESVRVVCTEGPDRVRELIAM 176
Query: 175 GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234
G SFD GEDGNLHLAREGGHSH+RIVHAADMTG+EIERALL+AV+++P+I VFEHHFAID
Sbjct: 177 GTSFDHGEDGNLHLAREGGHSHNRIVHAADMTGKEIERALLKAVINNPHIFVFEHHFAID 236
Query: 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
LLT DG D C GVDTLN ET EVVRF+SK TLLASGGAGHIYP TTNPLVATGDG+AM
Sbjct: 237 LLTCQDGSDITCLGVDTLNTETLEVVRFLSKATLLASGGAGHIYPKTTNPLVATGDGIAM 296
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
A+RAQAVISNMEFVQFHPTALADEGLP+KP + R+N+FLI+EAVRGDGGILYNL MERFM
Sbjct: 297 AYRAQAVISNMEFVQFHPTALADEGLPVKPTEPRDNAFLISEAVRGDGGILYNLAMERFM 356
Query: 355 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 414
PLYD+R ELAPRDVVARSIDDQLKKRNEKYVLLDISHKP +ILSHFPNIA+ CL+YGLD
Sbjct: 357 PLYDKRGELAPRDVVARSIDDQLKKRNEKYVLLDISHKPKNEILSHFPNIASTCLQYGLD 416
Query: 415 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
IT PIPVVPAAHYMCGGV AGLQGETNV+GLYVAGEVACTGLHGANRLASNSLLEALVF
Sbjct: 417 ITRHPIPVVPAAHYMCGGVHAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVF 476
Query: 475 ARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRY 534
A RAVQPS+D KS+S+DL+ASN W R VP SLG N IL T+E+RKELQSIM+ Y
Sbjct: 477 AERAVQPSVDQMKSSSLDLNASNLWPRPTVPFSLGSNANDKILSATEELRKELQSIMFNY 536
Query: 535 VGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
VGIVRST L+TAE +I LEA+WE YLF HGW+ T V E CEMRNLFCCAKLVVSSAL
Sbjct: 537 VGIVRSTMWLETAERKIGNLEAKWEEYLFRHGWKPTMVVPEICEMRNLFCCAKLVVSSAL 596
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTIILPS--LVNCTWSSRQLHKLPV 640
+RHESRGLHY +DFP++EE++RLPTII PS L++ TWSSRQL K P+
Sbjct: 597 SRHESRGLHYTIDFPNLEESERLPTIIFPSSPLIS-TWSSRQLQKQPM 643
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807493|ref|XP_002871630.1| L-aspartate oxidase [Arabidopsis lyrata subsp. lyrata] gi|297317467|gb|EFH47889.1| L-aspartate oxidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/650 (75%), Positives = 541/650 (83%), Gaps = 29/650 (4%)
Query: 1 MATGVAARTSNFHFGGIRCKGQSCQ-------QASLVSSLTFN--GCIQRELSWFLRFQR 51
MA V+A NF+ G +GQ+ + + +L + GC R +S
Sbjct: 1 MAAHVSA--GNFYLAGQVYRGQASNPFKEPSWSSGVFKALKADRCGCYSRGVSAI----- 53
Query: 52 FNFSHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVIT 111
+ S+ S+R V V S S KY+DF+VIGSGVAGL YALEVAK GTVAVIT
Sbjct: 54 -----TESSKPCTSIRAVSVSS-----STKYYDFTVIGSGVAGLRYALEVAKQGTVAVIT 103
Query: 112 KAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIREL 171
K EPHESNTNYAQGGVSAVLCP DSVESHMQDT+VAGA+LCD+ETVRVVCTEGP+RIREL
Sbjct: 104 KDEPHESNTNYAQGGVSAVLCPLDSVESHMQDTMVAGAHLCDEETVRVVCTEGPERIREL 163
Query: 172 IAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHF 231
IA+GASFD GEDGNLHLAREGGHSH RIVHAADMTGREIERALLEAV++DPNISVF+HHF
Sbjct: 164 IAMGASFDHGEDGNLHLAREGGHSHRRIVHAADMTGREIERALLEAVLNDPNISVFKHHF 223
Query: 232 AIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDG 291
AIDLLT+ G + VCHGVDTLN++T EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDG
Sbjct: 224 AIDLLTSQVGLNTVCHGVDTLNIKTNEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDG 283
Query: 292 MAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGME 351
MAMAHRAQAVISNMEFVQFHPTALADEGLPIKP+ REN+FLITEAVRGDGGILYNLGME
Sbjct: 284 MAMAHRAQAVISNMEFVQFHPTALADEGLPIKPQTARENAFLITEAVRGDGGILYNLGME 343
Query: 352 RFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKY 411
RFMP+YDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHK +KIL+HFPNIA+ECLK+
Sbjct: 344 RFMPVYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKARDKILAHFPNIASECLKH 403
Query: 412 GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEA 471
GLDIT QPIPVVPAAHYMCGGVRAGLQGETNV GL+VAGEVACTGLHGANRLASNSLLEA
Sbjct: 404 GLDITRQPIPVVPAAHYMCGGVRAGLQGETNVLGLFVAGEVACTGLHGANRLASNSLLEA 463
Query: 472 LVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKS--LGCNVMHNILRRTKEVRKELQS 529
LVFARRAVQPS + K T +D+SAS WTR VV + LG V+ I TKEVR+ELQ
Sbjct: 464 LVFARRAVQPSTELMKRTRLDVSASEKWTRPVVATARLLGDEVISKITALTKEVRRELQE 523
Query: 530 IMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLV 589
+MW+YVGIVRST L TAE +I ELEA+WETYLFEHGWEQT V LEACEMRNLFCCAKLV
Sbjct: 524 VMWKYVGIVRSTIRLTTAERKIAELEAKWETYLFEHGWEQTVVALEACEMRNLFCCAKLV 583
Query: 590 VSSALARHESRGLHYMVDFPHVEENKRLPTIILPSL-VNCTWSSRQLHKL 638
VSSALARHESRGLHYM DFP VEE+KR+PTIILPS +WSSR+L +
Sbjct: 584 VSSALARHESRGLHYMTDFPFVEESKRIPTIILPSSPTTASWSSRRLQNI 633
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|270342121|gb|ACZ74704.1| L-aspartate oxidase [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/648 (74%), Positives = 536/648 (82%), Gaps = 10/648 (1%)
Query: 1 MATGVAARTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSWFLRFQRF--NFSHSP 58
MAT + A + F CKG SC++ +LVS ++++LSW + FS P
Sbjct: 9 MATWIPAGSGTLQFRVTNCKGHSCRRTALVSDAPIARFLRKDLSWSKAVSKHVCAFSAPP 68
Query: 59 VSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHES 118
+ +N K + V SC D + FDFS+IGSG+AGL YALEVAK+G+VAVITKAE HE
Sbjct: 69 LQKNQKLFKIVS--SCKIDSLTQCFDFSIIGSGIAGLRYALEVAKYGSVAVITKAESHEC 126
Query: 119 NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASF 178
NTNYAQGGVSAVL PSDSVESHM+DTIVAGAYLCD+E+VRVVCTEGP+R+RELIA+GASF
Sbjct: 127 NTNYAQGGVSAVLGPSDSVESHMKDTIVAGAYLCDEESVRVVCTEGPERVRELIAMGASF 186
Query: 179 DRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238
D GEDGNLHL REGGHSHHRIVHAADMTG+EIERALL+AV+++PNI VFEHHFAIDLLT
Sbjct: 187 DHGEDGNLHLMREGGHSHHRIVHAADMTGKEIERALLKAVINNPNIFVFEHHFAIDLLTC 246
Query: 239 LDGPDAVCHGVDTLNVETQEV----VRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
D D +C GVDTLN +T EV +RF+SK TLLASGGAGHIYP TTNPLVATGDG+AM
Sbjct: 247 QDESDIICLGVDTLNTKTLEVGTAVIRFLSKATLLASGGAGHIYPKTTNPLVATGDGIAM 306
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
AHRAQA+ISNMEFVQFHPTALADEGLPIK K RE +FLI+EAVRGDGGILYNLGMERFM
Sbjct: 307 AHRAQALISNMEFVQFHPTALADEGLPIKQTKPREKAFLISEAVRGDGGILYNLGMERFM 366
Query: 355 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 414
PLYDERAELAPRDVVARSIDDQLKKR+EKYVLLDISHKP E+ILSHFPNI++ CLKYGLD
Sbjct: 367 PLYDERAELAPRDVVARSIDDQLKKRDEKYVLLDISHKPKEEILSHFPNISSTCLKYGLD 426
Query: 415 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
IT PIPVVPAAHYMCGGV+AGLQGETNV+GLYVAGEVACTGLHGANRLASNSLLEALVF
Sbjct: 427 ITRHPIPVVPAAHYMCGGVQAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVF 486
Query: 475 ARRAVQPSIDHKKSTSIDLSASNWWTR-TVVPKSLGCNVMHNILRRTKEVRKELQSIMWR 533
ARRAVQPS+D KS+S+DL+ASN W R P SL NV IL TKE R ELQSIMW
Sbjct: 487 ARRAVQPSVDWMKSSSLDLTASNLWPRPAAAPLSLESNVTDKILSMTKESRTELQSIMWN 546
Query: 534 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSA 593
YVGIVRST L+TA+ I LEA+WE LFEHGW+ T G E CEMRNLFCCAKLV+SSA
Sbjct: 547 YVGIVRSTMRLETAKQNICNLEAKWEECLFEHGWKPTMAGPEICEMRNLFCCAKLVISSA 606
Query: 594 LARHESRGLHYMVDFPHVEENKRLPTIILP-SLVNCTWSSRQLHKLPV 640
L+RHESRGLHY VDFPH+EE+KRLPTII P S VN TWSSRQLHK P+
Sbjct: 607 LSRHESRGLHYTVDFPHLEESKRLPTIIFPSSTVNSTWSSRQLHKQPM 654
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 641 | ||||||
| TAIR|locus:2185480 | 651 | AO "L-aspartate oxidase" [Arab | 0.982 | 0.967 | 0.766 | 2.5e-255 | |
| TIGR_CMR|GSU_1827 | 531 | GSU_1827 "L-aspartate oxidase" | 0.790 | 0.954 | 0.483 | 5.1e-122 | |
| UNIPROTKB|Q9KPA4 | 535 | nadB "L-aspartate oxidase" [Vi | 0.801 | 0.960 | 0.450 | 3e-108 | |
| TIGR_CMR|VC_2469 | 535 | VC_2469 "L-aspartate oxidase" | 0.801 | 0.960 | 0.450 | 3e-108 | |
| TIGR_CMR|CPS_4130 | 532 | CPS_4130 "L-aspartate oxidase" | 0.804 | 0.969 | 0.443 | 6.3e-108 | |
| TIGR_CMR|SO_1341 | 537 | SO_1341 "L-aspartate oxidase" | 0.806 | 0.962 | 0.444 | 1.2e-106 | |
| TIGR_CMR|CBU_0101 | 536 | CBU_0101 "L-aspartate oxidase" | 0.789 | 0.944 | 0.453 | 5.3e-104 | |
| UNIPROTKB|P10902 | 540 | nadB [Escherichia coli K-12 (t | 0.798 | 0.948 | 0.436 | 3.7e-103 | |
| TIGR_CMR|CHY_2373 | 519 | CHY_2373 "L-aspartate oxidase" | 0.438 | 0.541 | 0.501 | 2e-71 | |
| TIGR_CMR|SPO_3244 | 516 | SPO_3244 "L-aspartate oxidase, | 0.616 | 0.765 | 0.398 | 6.8e-71 |
| TAIR|locus:2185480 AO "L-aspartate oxidase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2458 (870.3 bits), Expect = 2.5e-255, P = 2.5e-255
Identities = 499/651 (76%), Positives = 549/651 (84%)
Query: 1 MATGVAA-RTSNFHFGGIRCKGQSCQQASLVSSLTFNGCIQRELSW----F--LRFQRFN 53
MA V+ NF+ G +GQ+ S S+ TF +E SW F L+ +R
Sbjct: 1 MAAHVSTGNIHNFYLAGQVYRGQAF---SWSSASTFMANPFKEPSWSSGVFKALKAERCG 57
Query: 54 -FSH--SPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVI 110
+S SP+SE K +R V V S S KY+DF+VIGSGVAGL YALEVAK GTVAVI
Sbjct: 58 CYSRGISPISETSKPIRAVSVSS-----STKYYDFTVIGSGVAGLRYALEVAKQGTVAVI 112
Query: 111 TKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRE 170
TK EPHESNTNYAQGGVSAVLCP DSVESHM+DT+VAGA+LCD+ETVRVVCTEGP+RIRE
Sbjct: 113 TKDEPHESNTNYAQGGVSAVLCPLDSVESHMRDTMVAGAHLCDEETVRVVCTEGPERIRE 172
Query: 171 LIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230
LIA+GASFD GEDGNLHLAREGGHSH RIVHAADMTGREIERALLEAV++DPNISVF+HH
Sbjct: 173 LIAMGASFDHGEDGNLHLAREGGHSHCRIVHAADMTGREIERALLEAVLNDPNISVFKHH 232
Query: 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGD 290
FAIDLLT+ DG + VCHGVDTLN++T EVVRFISKVTLLASGGAGHIYPSTTNPLVATGD
Sbjct: 233 FAIDLLTSQDGLNTVCHGVDTLNIKTNEVVRFISKVTLLASGGAGHIYPSTTNPLVATGD 292
Query: 291 GMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGM 350
GMAMAHRAQAVISNMEFVQFHPTALADEGLPIK + REN+FLITEAVRGDGGILYNLGM
Sbjct: 293 GMAMAHRAQAVISNMEFVQFHPTALADEGLPIKLQTARENAFLITEAVRGDGGILYNLGM 352
Query: 351 ERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLK 410
ERFMP+YDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP EKIL+HFPNIA+ECLK
Sbjct: 353 ERFMPVYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREKILAHFPNIASECLK 412
Query: 411 YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLE 470
+GLDIT QPIPVVPAAHYMCGGVRAGLQGETNV GL+VAGEVACTGLHGANRLASNSLLE
Sbjct: 413 HGLDITRQPIPVVPAAHYMCGGVRAGLQGETNVLGLFVAGEVACTGLHGANRLASNSLLE 472
Query: 471 ALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKS--LGCNVMHNILRRTKEVRKELQ 528
ALVFARRAVQPS + K T +D+ AS WTR VV + LG V+ I+ TKEVR+ELQ
Sbjct: 473 ALVFARRAVQPSTELMKRTRLDVCASEKWTRPVVATARLLGDEVIAKIIALTKEVRRELQ 532
Query: 529 SIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKL 588
+MW+YVGIVRST L TAE +I ELEA+WET+LFEHGWEQT V LEACEMRNLFCCAKL
Sbjct: 533 EVMWKYVGIVRSTIRLTTAERKIAELEAKWETFLFEHGWEQTVVALEACEMRNLFCCAKL 592
Query: 589 VVSSALARHESRGLHYMVDFPHVEENKRLPTIILPSL-VNCTWSSRQLHKL 638
VVSSALARHESRGLHYM DFP VEE+KR+PTIILPS +WSSR+L +
Sbjct: 593 VVSSALARHESRGLHYMTDFPFVEESKRIPTIILPSSPTTASWSSRRLQNI 643
|
|
| TIGR_CMR|GSU_1827 GSU_1827 "L-aspartate oxidase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 259/536 (48%), Positives = 339/536 (63%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
DF VIGSG+AGL +AL+ A+HGTVA++TK E ES TNYAQGG+++V D+ ++H++D
Sbjct: 6 DFLVIGSGIAGLAFALQAARHGTVAIVTKREVTESATNYAQGGIASVFSQDDTFDAHVED 65
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA 203
T+VAGA +C ++ VR+V EGP IR LI G F R + L REGGHS RI+HA
Sbjct: 66 TLVAGAGICHEDVVRMVVEEGPKVIRNLIEWGVQFTRSGEA-FDLTREGGHSQRRILHAD 124
Query: 204 DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD------GPDAVCHGVDTLNVETQ 257
D+TGREIERAL+ A +PNI ++EHH AIDL+T P+ C G L +E
Sbjct: 125 DVTGREIERALVAAARENPNIRIYEHHIAIDLITEAKVTRKRVAPNR-CLGAHVLGIEDN 183
Query: 258 EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317
V F +K+TLLA+GGAG +Y T NP VATGDG+AMA+RA A I+NMEF+QFHPT L
Sbjct: 184 VVRTFTAKITLLATGGAGKVYLYTCNPDVATGDGVAMAYRAGATIANMEFMQFHPTTL-- 241
Query: 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQL 377
P SFLI+EAVRG+G IL FM Y + +LAPRD+VAR+ID+++
Sbjct: 242 ----YHP---HAKSFLISEAVRGEGAILRRRDGTAFMEKYHKLKDLAPRDIVARAIDNEM 294
Query: 378 KKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGL 437
K E V LDI+HK E + + FPNI CL++GLD+T P+PVVPAAHY+CGGV
Sbjct: 295 KTHGEDCVFLDITHKDPEYVRNRFPNIYQTCLEFGLDMTRDPLPVVPAAHYLCGGVAVDA 354
Query: 438 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASN 497
GET++R LY GE A TGLHGANRLASNSLLEA V+A RA Q +++ + +
Sbjct: 355 NGETDIRYLYAIGEAAFTGLHGANRLASNSLLEAAVYAGRAYQHAVEELRQNHFEFPVIP 414
Query: 498 WWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE 557
W S + M + + E+R+ MW YVGIVRS L+ A RI ++ E
Sbjct: 415 EWDSGTATDS---DEMVVVSQNWDEIRR----FMWNYVGIVRSDKRLERALRRIRLIQEE 467
Query: 558 WETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEE 613
E Y W T V + E+RN+ A+L+V AL R ESRGLHY +++P ++
Sbjct: 468 IEDYY----WNFT-VTSDLIELRNIATVAELIVKCALQRKESRGLHYTINYPERDD 518
|
|
| UNIPROTKB|Q9KPA4 nadB "L-aspartate oxidase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 248/550 (45%), Positives = 336/550 (61%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D VIGSG AGL AL+VA++G V V++K E T YAQGG++AV SDS+ESH+QD
Sbjct: 10 DVLVIGSGAAGLSLALQVAQYGKVIVLSKGPRSEGATFYAQGGIAAVFDESDSIESHVQD 69
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-----LHLAREGGHSHHR 198
T++AGA +CD++TVR + + ++ LI G FD+ ED + HL REGGHSH R
Sbjct: 70 TLIAGAGICDEQTVRFIAEHAKECVQWLIDGGVPFDKEEDSDNDHPRYHLTREGGHSHRR 129
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD-GPDA---VCHGVDTLNV 254
I+HAAD TG ++ +L + + PNI+V E H A+DL+T G DA V V N
Sbjct: 130 ILHAADATGMAMQTSLQDNAHNHPNITVLERHNALDLITEDKIGGDANKVVGAYVWNRNA 189
Query: 255 ETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
E E +R +K +LA+GGA +Y T+NP V++GDG+AMA RA ++N+EF QFHPT
Sbjct: 190 EHVETIR--AKFVVLATGGASKVYQYTSNPDVSSGDGIAMAWRAGCRVANLEFNQFHPTC 247
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 374
L P+ +FL+TEA+RG+G L RFMP +DERAELAPRD+VAR+ID
Sbjct: 248 L------YHPEA---RNFLLTEALRGEGAYLRRPDGSRFMPDFDERAELAPRDIVARAID 298
Query: 375 DQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVR 434
++K+ + LDISHKP + I HFP I + + G+D+T +PIP+VPAAHY CGGV
Sbjct: 299 FEMKRLGADCMYLDISHKPADFIEKHFPTIYSRLMDLGIDMTKEPIPIVPAAHYTCGGVM 358
Query: 435 AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS 494
QG+T+++ LY GEV+ TGLHGANR+ASNSLLE +V+A A Q I + S+ S
Sbjct: 359 VNPQGQTDLKQLYAIGEVSYTGLHGANRMASNSLLECVVYAWSASQDIIAQLPNASMPES 418
Query: 495 ASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDEL 554
W V C+ +L+ EL+ MW Y+GIVR+ L+ A RI L
Sbjct: 419 LPAWDESQVT-----CSDEEVVLQHNWH---ELRLFMWDYMGIVRTNKRLERAMRRIQLL 470
Query: 555 EAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP-HVEE 613
+ E Y + V EMRNL A+L+V A+ R ESRGLHY +D+P + E
Sbjct: 471 QQETHEY-----YSNFRVSNNLLEMRNLLQVAELMVRCAMQRKESRGLHYTLDYPDQLAE 525
Query: 614 NKRLPTIILP 623
+ PTI++P
Sbjct: 526 SG--PTILVP 533
|
|
| TIGR_CMR|VC_2469 VC_2469 "L-aspartate oxidase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 248/550 (45%), Positives = 336/550 (61%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D VIGSG AGL AL+VA++G V V++K E T YAQGG++AV SDS+ESH+QD
Sbjct: 10 DVLVIGSGAAGLSLALQVAQYGKVIVLSKGPRSEGATFYAQGGIAAVFDESDSIESHVQD 69
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-----LHLAREGGHSHHR 198
T++AGA +CD++TVR + + ++ LI G FD+ ED + HL REGGHSH R
Sbjct: 70 TLIAGAGICDEQTVRFIAEHAKECVQWLIDGGVPFDKEEDSDNDHPRYHLTREGGHSHRR 129
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD-GPDA---VCHGVDTLNV 254
I+HAAD TG ++ +L + + PNI+V E H A+DL+T G DA V V N
Sbjct: 130 ILHAADATGMAMQTSLQDNAHNHPNITVLERHNALDLITEDKIGGDANKVVGAYVWNRNA 189
Query: 255 ETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
E E +R +K +LA+GGA +Y T+NP V++GDG+AMA RA ++N+EF QFHPT
Sbjct: 190 EHVETIR--AKFVVLATGGASKVYQYTSNPDVSSGDGIAMAWRAGCRVANLEFNQFHPTC 247
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 374
L P+ +FL+TEA+RG+G L RFMP +DERAELAPRD+VAR+ID
Sbjct: 248 L------YHPEA---RNFLLTEALRGEGAYLRRPDGSRFMPDFDERAELAPRDIVARAID 298
Query: 375 DQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVR 434
++K+ + LDISHKP + I HFP I + + G+D+T +PIP+VPAAHY CGGV
Sbjct: 299 FEMKRLGADCMYLDISHKPADFIEKHFPTIYSRLMDLGIDMTKEPIPIVPAAHYTCGGVM 358
Query: 435 AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS 494
QG+T+++ LY GEV+ TGLHGANR+ASNSLLE +V+A A Q I + S+ S
Sbjct: 359 VNPQGQTDLKQLYAIGEVSYTGLHGANRMASNSLLECVVYAWSASQDIIAQLPNASMPES 418
Query: 495 ASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDEL 554
W V C+ +L+ EL+ MW Y+GIVR+ L+ A RI L
Sbjct: 419 LPAWDESQVT-----CSDEEVVLQHNWH---ELRLFMWDYMGIVRTNKRLERAMRRIQLL 470
Query: 555 EAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP-HVEE 613
+ E Y + V EMRNL A+L+V A+ R ESRGLHY +D+P + E
Sbjct: 471 QQETHEY-----YSNFRVSNNLLEMRNLLQVAELMVRCAMQRKESRGLHYTLDYPDQLAE 525
Query: 614 NKRLPTIILP 623
+ PTI++P
Sbjct: 526 SG--PTILVP 533
|
|
| TIGR_CMR|CPS_4130 CPS_4130 "L-aspartate oxidase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 243/548 (44%), Positives = 327/548 (59%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D +IGSG AGL AL +A++ V +++K +E +T YAQGG++AV +DSV SH++D
Sbjct: 8 DVLIIGSGAAGLTLALHLAQNADVVILSKGPLNEGSTFYAQGGIAAVFDENDSVASHVED 67
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGE----DGNLHLAREGGHSHHRI 199
TIVAGA LCD++TVR + LI G FD+ + + HL REGGHSH RI
Sbjct: 68 TIVAGAGLCDEDTVRFTTENAKSCLEWLIDQGVEFDKEQSSKGESRYHLTREGGHSHRRI 127
Query: 200 VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL---TTLDGPDAVCHGVDTLNVET 256
+H+AD TG+ I+ L + V I +FE AIDL+ +T C G N T
Sbjct: 128 LHSADATGQAIQTTLADQVRQHSRIRIFERFNAIDLICQASTTGNQPKQCIGAYIWNRNT 187
Query: 257 QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316
++V ++ T+LA+GGA +Y T+NP VA+GDG+AMA RA ++NMEF QFHPT L
Sbjct: 188 EKVESIYAQKTILATGGASKVYQYTSNPDVASGDGIAMAWRAGCRVANMEFNQFHPTCL- 246
Query: 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 376
P +FL+TEA+RG+G L RFMP +DERAELAPRD+VAR+ID +
Sbjct: 247 -----FHPSA---GTFLLTEALRGEGAKLRRPDGSRFMPAFDERAELAPRDIVARAIDYE 298
Query: 377 LKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAG 436
+K+ + LDISHKP++ I HFP I + + G+DIT QPIP+VPAAHY CGGV
Sbjct: 299 MKRLGADCMYLDISHKPSDFIKQHFPTIYEKTMSLGIDITKQPIPIVPAAHYTCGGVMVD 358
Query: 437 LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSAS 496
QG+T++ LY GE++ TGLHGANRLASNSLLE LVFAR A + ++ L+
Sbjct: 359 HQGKTDISQLYAIGEMSYTGLHGANRLASNSLLECLVFARAAAIEIGETLVQSNHYLTLP 418
Query: 497 NWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEA 556
+W V + HN EL+ MW YVGIVR+T L+ A R++ L+
Sbjct: 419 HWDDSRVTDSDEEVVIQHNW--------HELRLFMWDYVGIVRTTKRLERALHRVELLQQ 470
Query: 557 EWETYLFEHGWEQTF-VGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 615
E E Y Q F V E+RNL A+L++ A+ R ESRGLHY +D+P +
Sbjct: 471 EIEDYY------QNFKVSNNLLELRNLVQVAELIIRCAMERKESRGLHYTLDYPDLLTTA 524
Query: 616 RLPTIILP 623
+ PTI+ P
Sbjct: 525 K-PTILSP 531
|
|
| TIGR_CMR|SO_1341 SO_1341 "L-aspartate oxidase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 244/549 (44%), Positives = 317/549 (57%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D VIGSG AGL AL +A+ V +++K E +T YAQGG+++V SD++ESH+ D
Sbjct: 10 DILVIGSGAAGLTLALHLAEKANVILLSKGPLSEGSTYYAQGGIASVFDESDTIESHVAD 69
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGE-------DGNLHLAREGGHSH 196
T+VAGA LCD + V ++ LI G +FD+ E D HL REGGHSH
Sbjct: 70 TLVAGAGLCDKDVVTFTAENAKSAMQWLIECGVAFDKEEAAGNNPKDAPYHLTREGGHSH 129
Query: 197 HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT--LDGPDAVCHGVDTLNV 254
RI+HAAD TG+E++ L E + PNI V E + AIDL+TT L+ P G N
Sbjct: 130 RRILHAADATGKEVQTTLQERALDHPNIQVLERYNAIDLITTRKLNRPGNRVLGAYVWNR 189
Query: 255 ETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314
++V +K LA+GG+ +Y T+NP VA+GDG+AMA RA ++NMEF QFHPT
Sbjct: 190 NAEQVETIKAKFVALATGGSSKVYQYTSNPDVASGDGIAMAWRAGCRVANMEFNQFHPTC 249
Query: 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 374
L +FL+TEA+RG+G L RFMP +DERAELAPRD+VAR+ID
Sbjct: 250 LYHADA---------RNFLLTEALRGEGAYLRRPDGSRFMPDFDERAELAPRDIVARAID 300
Query: 375 DQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVR 434
++K+ V LDISHK + ++ HFP I + CL+ G+DIT IPVVPAAHY CGGV
Sbjct: 301 YEMKRLGADCVYLDISHKDADFVMKHFPTIYSRCLELGIDITKDAIPVVPAAHYTCGGVM 360
Query: 435 AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS 494
L G+T++ GLY GEVA TGLHGANRLASNSLLE LVFAR A + +
Sbjct: 361 TDLHGQTDLNGLYAIGEVAYTGLHGANRLASNSLLECLVFARAASEDIESQLHKIPLPGL 420
Query: 495 ASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDEL 554
W V + HN EL+ MW YVGIVRS L+ A R L
Sbjct: 421 IPAWDESKVSNSDEEVVIAHNW--------HELRLFMWDYVGIVRSDKRLERALRRCLML 472
Query: 555 EAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEEN 614
+ E + Y + V E+RNL A+L++ A+ R ESRGLHY +D P ++
Sbjct: 473 QQEIQEY-----YSNFRVSNNLLELRNLVQVAELIIRCAMDRKESRGLHYNIDHPEKLDS 527
Query: 615 KRLPTIILP 623
LPTI+ P
Sbjct: 528 P-LPTILQP 535
|
|
| TIGR_CMR|CBU_0101 CBU_0101 "L-aspartate oxidase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 240/529 (45%), Positives = 311/529 (58%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVL-CPSDSVESHM 141
+D VIGSG AGL AL +A VAV++K + ++ +AQGG++AV+ DSVE H+
Sbjct: 4 YDVLVIGSGAAGLGLALSLASEMRVAVLSKDDLTAGSSPHAQGGIAAVMNAADDSVELHV 63
Query: 142 QDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVH 201
QDT+ AG LCD E VR T+ + L+ G F N HL +EGGHS RI+H
Sbjct: 64 QDTLNAGGGLCDPEAVRATVTQAKSAVEWLVQQGVQFTTDSKNNYHLTQEGGHSRRRILH 123
Query: 202 AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVR 261
AAD TG I + L E V+S PNI F H AIDLL + VC G + + E Q +R
Sbjct: 124 AADKTGAVIVKTLAEQVLSHPNIDCFTDHIAIDLLIE----NNVCKGAEVYDGEQQRSLR 179
Query: 262 FISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 321
F + T+LA+GGA Y T+NP +GDG+AMA RA ++N+EF QFHPT L P
Sbjct: 180 FHATHTVLATGGASFAYLHTSNPNRTSGDGIAMAWRAGCRVANLEFNQFHPTCLYH---P 236
Query: 322 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRN 381
+ N +LITE VRG+GG L +RFMP YD+RAE+APRD+VAR+ID +LKK N
Sbjct: 237 LA------NHYLITEVVRGEGGYLLLPDGKRFMPNYDDRAEMAPRDIVARAIDMELKKNN 290
Query: 382 EKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGET 441
+V LDISH+P + I FP I A CL +G D+T P+PVVPAAHY CGGV LQG+T
Sbjct: 291 WDHVYLDISHRPADFIKKAFPTIYATCLNFGFDMTEGPLPVVPAAHYTCGGVMTDLQGQT 350
Query: 442 NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTR 501
++ LY GEVA TGLHGANR+ASNSLLE LVFA + +I + + I A
Sbjct: 351 DMARLYAIGEVAYTGLHGANRMASNSLLECLVFAASCAR-AIK-RSAAPIPRLAEEAAHP 408
Query: 502 TVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 561
S G R + +++ IMW +VGIVRS L A+ + +L +
Sbjct: 409 FFSLDSAG--KPREDSRTVDDFIHQVRKIMWDHVGIVRSDIRLIKAKNDLQKLLQQINVV 466
Query: 562 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPH 610
+ + E+RN+ A+LVV SAL R ESRGLHY VD+PH
Sbjct: 467 -----FPLQILSKSLIELRNVMTVAQLVVESALMRKESRGLHYNVDYPH 510
|
|
| UNIPROTKB|P10902 nadB [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 241/552 (43%), Positives = 326/552 (59%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 143
D +IGSG AGL AL +A V V++K E +T YAQGG++AV +DS++SH++D
Sbjct: 10 DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVED 69
Query: 144 TIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFD-----RGEDGNLHLAREGGHSHHR 198
T++AGA +CD V V + ++ LI G FD GE+ + HL REGGHSH R
Sbjct: 70 TLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEE-SYHLTREGGHSHRR 128
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT----LDGPDAVCHG-VDTLN 253
I+HAAD TGRE+E L+ ++ PNI V E A+DL+ + L G V V N
Sbjct: 129 ILHAADATGREVETTLVSKALNHPNIRVLERSNAVDLIVSDKIGLPGTRRVVGAWVWNRN 188
Query: 254 VETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 313
ET E +K +LA+GGA +Y TTNP +++GDG+AMA RA ++N+EF QFHPT
Sbjct: 189 KETVETCH--AKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPT 246
Query: 314 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSI 373
AL P+ +FL+TEA+RG+G L RFMP +DER ELAPRD+VAR+I
Sbjct: 247 AL------YHPQA---RNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAI 297
Query: 374 DDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGV 433
D ++K+ + LDISHKP + I HFP I + L G+D+T +P+P+VPAAHY CGGV
Sbjct: 298 DHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCGGV 357
Query: 434 RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDL 493
G T+V GLY GEV+ TGLHGANR+ASNSLLE LV+ A + I + + D+
Sbjct: 358 MVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAE-DITRRMPYAHDI 416
Query: 494 SASNWWTRTVVPK-SLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRID 552
S W + V + HN EL+ MW YVGIVR+T L+ A RI
Sbjct: 417 STLPPWDESRVENPDERVVIQHNW--------HELRLFMWDYVGIVRTTKRLERALRRIT 468
Query: 553 ELEAEWETYLFEHGWEQTF-VGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHV 611
L+ E + Y + H F V E+RNL A+L+V A+ R ESRGLH+ +D+P +
Sbjct: 469 MLQQEIDEY-YAH-----FRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPEL 522
Query: 612 EENKRLPTIILP 623
+ P+I+ P
Sbjct: 523 LTHSG-PSILSP 533
|
|
| TIGR_CMR|CHY_2373 CHY_2373 "L-aspartate oxidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 149/297 (50%), Positives = 193/297 (64%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVL-CPSDSVESHMQ 142
D+ VIGSG+AGL AL A++G V V+TK ++NT+ AQGG++A + DS E H Q
Sbjct: 19 DYLVIGSGIAGLYAALNAARYGEVIVLTKKNLGDTNTDLAQGGIAAAVDTEEDSPELHYQ 78
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DTI AGA LC+ E VRV+ +G +R+ L+ +GA F+R +DG L L EG H RI++
Sbjct: 79 DTIAAGAGLCNPEAVRVLVEDGIERVHHLVELGADFNR-KDGKLALRMEGAHRRRRILYR 137
Query: 203 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF 262
D TG EI+R L AV + NI V E+HFA+DL+T D C G + E + F
Sbjct: 138 GDTTGEEIQRVLSAAVKNHSNIRVMENHFALDLITE----DRECLGALAWD-ENGNLRLF 192
Query: 263 ISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322
+SK T+LA+GGAG ++ TTNP VATGDG+AMA+RA A + +MEF QFHPTAL LP
Sbjct: 193 LSKFTILATGGAGQVFRETTNPDVATGDGIAMAYRAGAGVMDMEFFQFHPTAL---NLPG 249
Query: 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK 379
+ K FLI+EAVRG+G L N E FM Y E A+LAPRDVVAR+I DQ +K
Sbjct: 250 RQK------FLISEAVRGEGARLVNAAGEYFMKNYHELADLAPRDVVARAIWDQAQK 300
|
|
| TIGR_CMR|SPO_3244 SPO_3244 "L-aspartate oxidase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 164/412 (39%), Positives = 223/412 (54%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
+IG+G+A + AL++A H + + H +++ +AQGGV+A + P+D+ E+H +DT+
Sbjct: 11 IIGAGLAAIYAALKLAPHPVLMISPDPLGHGASSAWAQGGVAAAMDPADTPEAHARDTLR 70
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADM 205
AGA E V I +L +G +FDR DG ++RE HS R+V D
Sbjct: 71 AGAGTVLQEVADYVTRAARAHILDLTDLGTAFDRTRDGGYVMSREAAHSAARVVRVKGDQ 130
Query: 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK 265
G EI RAL+ + ++ V E LL VC + + E V +
Sbjct: 131 AGAEIMRALIAELRQTRSVQVLEGAQVTRLLVEAGRVSGVC--LTSAAPEGSAPVTLRAP 188
Query: 266 VTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPK 325
LLA+GGA +Y TTNP G + MA RA A I++ EFVQFHPTA+A P P
Sbjct: 189 AVLLAAGGAAGLYAQTTNPARIRGQALGMAARAGARIADGEFVQFHPTAIATGADPA-P- 246
Query: 326 KTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYV 385
L TEA+RG+G IL + +RFMP AELAPRDVVAR++ Q + N
Sbjct: 247 -------LATEALRGEGAILIDRHGQRFMPALHPDAELAPRDVVARAVYLQTQAGNAP-- 297
Query: 386 LLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRG 445
LD + + FP +A C + G+D S PIPV AAHY GGV A L G+ ++ G
Sbjct: 298 ALDTRAAIGAHLPTLFPAVAQACAEAGIDPLSAPIPVAAAAHYHMGGVAADLDGKCSLPG 357
Query: 446 LYVAGEVACTGLHGANRLASNSLLEALVFAR---RAVQPSIDHKKSTSIDLS 494
L+V GE A TGLHGANRLASN LLEALVFAR R + + + +D+S
Sbjct: 358 LWVCGEAASTGLHGANRLASNGLLEALVFARACARDIARQVRQTVAARVDIS 409
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9KPA4 | NADB_VIBCH | 1, ., 4, ., 3, ., 1, 6 | 0.4462 | 0.8034 | 0.9626 | yes | no |
| Q8XWM7 | NADB1_RALSO | 1, ., 4, ., 3, ., 1, 6 | 0.4706 | 0.8096 | 0.9737 | yes | no |
| Q8ZD80 | NADB_YERPE | 1, ., 4, ., 3, ., 1, 6 | 0.4306 | 0.8049 | 0.9681 | yes | no |
| Q51363 | NADB_PSEAE | 1, ., 4, ., 3, ., 1, 6 | 0.4482 | 0.8096 | 0.9646 | yes | no |
| Q8ZMX9 | NADB_SALTY | 1, ., 4, ., 3, ., 1, 6 | 0.4268 | 0.8174 | 0.9703 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 641 | |||
| PLN02815 | 594 | PLN02815, PLN02815, L-aspartate oxidase | 0.0 | |
| COG0029 | 518 | COG0029, NadB, Aspartate oxidase [Coenzyme metabol | 0.0 | |
| PRK09077 | 536 | PRK09077, PRK09077, L-aspartate oxidase; Provision | 0.0 | |
| TIGR00551 | 488 | TIGR00551, nadB, L-aspartate oxidase | 1e-171 | |
| PRK07804 | 541 | PRK07804, PRK07804, L-aspartate oxidase; Provision | 1e-169 | |
| PRK07395 | 553 | PRK07395, PRK07395, L-aspartate oxidase; Provision | 1e-163 | |
| PRK08071 | 510 | PRK08071, PRK08071, L-aspartate oxidase; Provision | 1e-150 | |
| PRK07512 | 513 | PRK07512, PRK07512, L-aspartate oxidase; Provision | 1e-143 | |
| COG1053 | 562 | COG1053, SdhA, Succinate dehydrogenase/fumarate re | 1e-134 | |
| PRK06263 | 543 | PRK06263, sdhA, succinate dehydrogenase flavoprote | 1e-133 | |
| TIGR01812 | 541 | TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase | 1e-132 | |
| PRK06175 | 433 | PRK06175, PRK06175, L-aspartate oxidase; Provision | 1e-124 | |
| PRK06069 | 577 | PRK06069, sdhA, succinate dehydrogenase flavoprote | 1e-115 | |
| PRK08205 | 583 | PRK08205, sdhA, succinate dehydrogenase flavoprote | 1e-111 | |
| TIGR01816 | 565 | TIGR01816, sdhA_forward, succinate dehydrogenase, | 1e-110 | |
| PRK07057 | 591 | PRK07057, sdhA, succinate dehydrogenase flavoprote | 1e-100 | |
| PTZ00139 | 617 | PTZ00139, PTZ00139, Succinate dehydrogenase [ubiqu | 3e-97 | |
| PRK06452 | 566 | PRK06452, sdhA, succinate dehydrogenase flavoprote | 5e-95 | |
| PRK05945 | 575 | PRK05945, sdhA, succinate dehydrogenase flavoprote | 1e-94 | |
| PRK09231 | 582 | PRK09231, PRK09231, fumarate reductase flavoprotei | 6e-91 | |
| TIGR01176 | 580 | TIGR01176, fum_red_Fp, fumarate reductase, flavopr | 8e-91 | |
| PRK05675 | 570 | PRK05675, sdhA, succinate dehydrogenase flavoprote | 9e-91 | |
| PRK08958 | 588 | PRK08958, sdhA, succinate dehydrogenase flavoprote | 4e-87 | |
| PLN00128 | 635 | PLN00128, PLN00128, Succinate dehydrogenase [ubiqu | 2e-86 | |
| PRK09078 | 598 | PRK09078, sdhA, succinate dehydrogenase flavoprote | 1e-85 | |
| pfam00890 | 401 | pfam00890, FAD_binding_2, FAD binding domain | 3e-85 | |
| PRK07803 | 626 | PRK07803, sdhA, succinate dehydrogenase flavoprote | 7e-85 | |
| PRK08401 | 466 | PRK08401, PRK08401, L-aspartate oxidase; Provision | 3e-73 | |
| PRK08626 | 657 | PRK08626, PRK08626, fumarate reductase flavoprotei | 7e-73 | |
| TIGR01811 | 603 | TIGR01811, sdhA_Bsu, succinate dehydrogenase or fu | 7e-59 | |
| PRK08641 | 589 | PRK08641, sdhA, succinate dehydrogenase flavoprote | 9e-56 | |
| TIGR01813 | 439 | TIGR01813, flavo_cyto_c, flavocytochrome c | 1e-39 | |
| PRK07573 | 640 | PRK07573, sdhA, succinate dehydrogenase flavoprote | 1e-26 | |
| PRK06481 | 506 | PRK06481, PRK06481, fumarate reductase flavoprotei | 2e-26 | |
| pfam02910 | 127 | pfam02910, Succ_DH_flav_C, Fumarate reductase flav | 1e-21 | |
| PTZ00306 | 1167 | PTZ00306, PTZ00306, NADH-dependent fumarate reduct | 1e-18 | |
| PRK13800 | 897 | PRK13800, PRK13800, putative oxidoreductase/HEAT r | 1e-08 | |
| PRK08275 | 554 | PRK08275, PRK08275, putative oxidoreductase; Provi | 1e-08 | |
| PTZ00306 | 1167 | PTZ00306, PTZ00306, NADH-dependent fumarate reduct | 5e-07 | |
| PRK08275 | 554 | PRK08275, PRK08275, putative oxidoreductase; Provi | 4e-05 | |
| PRK06854 | 608 | PRK06854, PRK06854, adenylylsulfate reductase subu | 7e-05 | |
| PRK08274 | 466 | PRK08274, PRK08274, tricarballylate dehydrogenase; | 6e-04 | |
| pfam01266 | 234 | pfam01266, DAO, FAD dependent oxidoreductase | 0.001 | |
| PRK06854 | 608 | PRK06854, PRK06854, adenylylsulfate reductase subu | 0.003 |
| >gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase | Back alignment and domain information |
|---|
Score = 1143 bits (2959), Expect = 0.0
Identities = 460/588 (78%), Positives = 499/588 (84%), Gaps = 3/588 (0%)
Query: 57 SPVSENWKSLRT--VPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAE 114
S ++ K + S L D S KYFDF VIGSG+AGL YALEVA++GTVA+ITK E
Sbjct: 2 SAIAATRKPIGAERASSASRLDDESTKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDE 61
Query: 115 PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAI 174
PHESNTNYAQGGVSAVL PSDSVESHM+DTIVAGA+LCD+ETVRVVCTEGP+R++ELIA+
Sbjct: 62 PHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAM 121
Query: 175 GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234
GASFD GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAV +DPNI+ FEHHFAID
Sbjct: 122 GASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181
Query: 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 294
LLT+ DG VCHG D L+ T EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDG+AM
Sbjct: 182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAM 241
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
AHRAQAV+SNMEFVQFHPTALADEGLPIKP K REN+FLITEAVRGDGGILYNL ERFM
Sbjct: 242 AHRAQAVVSNMEFVQFHPTALADEGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFM 301
Query: 355 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 414
PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP E+ILSHFPNIAAECLK GLD
Sbjct: 302 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREEILSHFPNIAAECLKRGLD 361
Query: 415 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
IT QPIPVVPAAHYMCGGVR GLQGETNV+GLY AGEVACTGLHGANRLASNSLLEALVF
Sbjct: 362 ITKQPIPVVPAAHYMCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVF 421
Query: 475 ARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRY 534
ARRAVQPSIDH D+SA+ W R V P +L +VM IL T VRKELQ IMW Y
Sbjct: 422 ARRAVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWNY 481
Query: 535 VGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
VGIVRST L+TAE +++ELEAEWE LF HGW+ T VGLEACEMRNLFC AKLVVSSAL
Sbjct: 482 VGIVRSTERLETAERKLEELEAEWEAILFRHGWKPTMVGLEACEMRNLFCVAKLVVSSAL 541
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTIILPSLV-NCTWSSRQLHKLPVC 641
AR ESRGLHY D+P + E++R PT+I PS+ TWSSR LH+
Sbjct: 542 ARKESRGLHYTTDYPELVESERKPTVIFPSVPTAGTWSSRSLHRPKRG 589
|
Length = 594 |
| >gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 605 bits (1562), Expect = 0.0
Identities = 244/543 (44%), Positives = 317/543 (58%), Gaps = 43/543 (7%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
+IGSG+AGL AL +A V V+TK ES++ +AQGG++A L DS E H+ DT+
Sbjct: 12 IIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLA 71
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206
AGA LCD+E V + +E P+ I LI +G FDR EDG LHL REGGHS RI+HAAD T
Sbjct: 72 AGAGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADAT 131
Query: 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 266
G+EI ALL+ V + PNI+V E A+DL+ GV LN E+ F +K
Sbjct: 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIE---DGIGVAGVLVLN-RNGELGTFRAKA 187
Query: 267 TLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKK 326
+LA+GG G +Y TTNP +TGDG+AMA RA A ++++EFVQFHPTAL
Sbjct: 188 VVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTAL---------YI 238
Query: 327 TRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVL 386
+ +FLI+EAVRG+G IL N ERFMP Y R ELAPRDVVAR+ID ++K+ V
Sbjct: 239 PQRRAFLISEAVRGEGAILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD-VF 297
Query: 387 LDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGL 446
LDISH P + FP I A CLK G+D T +PIPVVPAAHY GG+ G T++ GL
Sbjct: 298 LDISHIPGDFFERRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGL 357
Query: 447 YVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH---KKSTSIDLSASNWWTRTV 503
Y GEVACTGLHGANRLASNSLLE LVF +RA + + L + + V
Sbjct: 358 YAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLAPAPREAPTLPVRDDYEENV 417
Query: 504 VPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 563
+ H+ R EL+ +MWRYVGIVR+ L+ A R++ L+ E + Y
Sbjct: 418 LLA-------HD--------RHELRRLMWRYVGIVRTAKGLERAIRRLEPLQQENDEYA- 461
Query: 564 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP 623
+ RNL A L+ +AL R ESRG H+ +D+P + ++
Sbjct: 462 --NFRV--------SNRNLALVALLIARAALLRTESRGAHFRLDYPDTLPEAQRRILVTL 511
Query: 624 SLV 626
+
Sbjct: 512 NDA 514
|
Length = 518 |
| >gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 252/548 (45%), Positives = 327/548 (59%), Gaps = 31/548 (5%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
D +IGSG AGL AL +A+H VAV++K E +T YAQGG++AVL +DS+ESH++
Sbjct: 9 CDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVE 68
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN----LHLAREGGHSHHR 198
DT++AGA LCD++ VR + + ++ LI G F E N HL REGGHSH R
Sbjct: 69 DTLIAGAGLCDEDAVRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRR 128
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT--LDGPDAVCHGVDTLNVET 256
I+HAAD TG+ ++ L+E + PNI+V E H AIDL+T+ L P G LN
Sbjct: 129 ILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNK 188
Query: 257 QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316
+ V +K +LA+GGA +Y TTNP +A+GDG+AMA RA ++NMEF QFHPT L
Sbjct: 189 ERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQFHPTCL- 247
Query: 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 376
P + SFLITEA+RG+G L RFMP +DERAELAPRD+VAR+ID +
Sbjct: 248 -----YHP---QARSFLITEALRGEGAYLKLPDGTRFMPDFDERAELAPRDIVARAIDHE 299
Query: 377 LKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAG 436
+K+ V LDISHKP + I HFP I CL+ G+DIT +PIPVVPAAHY CGGV
Sbjct: 300 MKRLGADCVYLDISHKPADFIRQHFPTIYERCLELGIDITKEPIPVVPAAHYTCGGVMVD 359
Query: 437 LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSAS 496
L G T++ GLY GEV+ TGLHGANR+ASNSLLE LV+ R A + + + +
Sbjct: 360 LHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLPKAPMPPTLP 419
Query: 497 NWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEA 556
W V + HN EL+ MW YVGIVR+T L+ A RI L+
Sbjct: 420 AWDESRVTDSDEEVVIQHNW--------HELRLFMWDYVGIVRTTKRLERALHRIRLLQQ 471
Query: 557 EWETYLFEHGWEQTF-VGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 615
E + Y F V E+RNL A+L+V A+ R ESRGLHY +D+P +
Sbjct: 472 EIDEYY------ANFRVSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPEA 525
Query: 616 RLPTIILP 623
PTI+ P
Sbjct: 526 G-PTILSP 532
|
Length = 536 |
| >gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase | Back alignment and domain information |
|---|
Score = 496 bits (1279), Expect = e-171
Identities = 237/527 (44%), Positives = 305/527 (57%), Gaps = 41/527 (7%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
D VIGSG AGL AL +A G V V++KA E N+ YAQGG++AVL +DS++SH++
Sbjct: 3 CDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVE 62
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT+ AGA +CD E V V ++ ++ L+ G FDR E G+ L REGGHS+ RI+HA
Sbjct: 63 DTLAAGAGICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHA 122
Query: 203 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF 262
AD TGRE+ L++ ++ PNI + E A+DLL GV N ET E
Sbjct: 123 ADATGREVITTLVKKALNHPNIRIIEGENALDLLIE----TGRVVGVWVWNRETVETCHA 178
Query: 263 ISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322
+LA+GGAG +Y TTNP ++TGDG+A+A RA + ++EF QFHPTAL
Sbjct: 179 --DAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTAL------Y 230
Query: 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE 382
KP+ FLITEAVRG+G L + RFM + R ELAPRD+VAR+ID ++K+
Sbjct: 231 KPRARY---FLITEAVRGEGAYLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGA 287
Query: 383 KYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETN 442
V LD S E FP I A+CL G+D T +PIPVVPAAHY CGG+ G T
Sbjct: 288 DCVFLDASGI--EAFRQRFPTIYAKCLGAGIDPTREPIPVVPAAHYTCGGISVDDHGRTT 345
Query: 443 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRT 502
V GLY GEVACTGLHGANRLASNSLLE LVF A + I + + D+S S W
Sbjct: 346 VPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAE-DISRRPPYASDISTSPPWDE- 403
Query: 503 VVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL 562
P+S + + EL+S MW Y GIVR T SL+ A R+ L+ E + Y
Sbjct: 404 --PRSENPDDRVVLQHN----MSELRSFMWDYAGIVRLTKSLERALRRLVMLQQEIDEYE 457
Query: 563 FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
+RNL AKL+ SAL R ESRG H+ +D+P
Sbjct: 458 ----------------LRNLVQVAKLITRSALMREESRGAHFRLDYP 488
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]. Length = 488 |
| >gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 492 bits (1270), Expect = e-169
Identities = 240/534 (44%), Positives = 299/534 (55%), Gaps = 48/534 (8%)
Query: 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
D V+GSGVAGL AL + G V V+TKA + +T +AQGG++AVL P DS E+H+
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVA 77
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT+VAGA LCD + VR + EGP +REL+A+GA FD DG L REGGHS RIVHA
Sbjct: 78 DTLVAGAGLCDPDAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHA 137
Query: 203 A-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--ETQE- 258
D TG E++RAL AV +DP + + EH A+DLLT DG AV GV TL+V E
Sbjct: 138 GGDATGAEVQRALDAAVRADP-LDIREHALALDLLT--DGTGAVA-GV-TLHVLGEGSPD 192
Query: 259 ---VVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315
V + +LA+GG G +Y +TTNP +TGDG+A+A RA A +S++EFVQFHPT L
Sbjct: 193 GVGAVH--APAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHPTVL 250
Query: 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD 375
LI+EAVRG+G IL + RFM A+LAPRDVVA++ID
Sbjct: 251 ------FLGPAAGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLADLAPRDVVAKAIDR 304
Query: 376 QLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRA 435
++K + +V LD E FP I A C G+D QPIPV PAAHY CGGV
Sbjct: 305 RMKATGDDHVYLDARG--IEGFARRFPTITASCRAAGIDPVRQPIPVAPAAHYSCGGVVT 362
Query: 436 GLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSA 495
+ G T+V GLY AGEVACTG+HGANRLASNSLLE LV RA +A
Sbjct: 363 DVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGA-----------AAAA 411
Query: 496 SNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELE 555
P++ L R ELQ M R G++RS L A D L
Sbjct: 412 HA--AAAGRPRATPAVGPEPGL-LPALDRAELQRAMTRGAGVLRSAAGLARAA---DRLA 465
Query: 556 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
A + G E NL A+ +V++ALAR ESRG H+ DFP
Sbjct: 466 AGAPA--------RVVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFP 511
|
Length = 541 |
| >gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 477 bits (1230), Expect = e-163
Identities = 217/567 (38%), Positives = 303/567 (53%), Gaps = 56/567 (9%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 140
FD V+GSG AGL AL + H V +ITK S +++AQGG++A + P DS + H
Sbjct: 8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLH 67
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 200
+DT+ AGA LCD E VR + + P+ I L+ +G +FDR +L L E HS R++
Sbjct: 68 YEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEMGVAFDR-HGQHLALTLEAAHSRPRVL 126
Query: 201 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 260
HAAD TGR I L E V+ PNI + A+ L L+ C G+ L +
Sbjct: 127 HAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLW--LEPETGRCQGISLLYQGQITWL 184
Query: 261 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 320
R + +LA+GG G ++ TTNP V+TGDG+A+A RA A + ++EF QFHPTAL G
Sbjct: 185 R--AGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTALTKPGA 242
Query: 321 PIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 380
P FLI+EAVRG+G L + RF Y ELAPRDVV+R+I L+K
Sbjct: 243 P---------RFLISEAVRGEGAHLVDAQGRRFAFDYHPAGELAPRDVVSRAIFSHLQKT 293
Query: 381 NEK----YVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAG 436
+V LD+ P E+I FPNI C K+G+D+ +PIPV PAAHY GGV
Sbjct: 294 ATDPATAHVWLDLRPIPAERIRRRFPNIIRVCQKWGIDVFQEPIPVAPAAHYWMGGVVTD 353
Query: 437 LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR--RAVQPSIDH-----KKST 489
L +T++ GLY GE A TG+HGANRLASNSLLE LVFA ++ I+
Sbjct: 354 LNNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELPIEPPASPDLPPI 413
Query: 490 SIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEW 549
S + AS W N + + +R+EL ++W+ GI R +L+ A
Sbjct: 414 SFIIDASQW---------------KNEQEQIQRIRQELPELVWQSAGICREADTLERAIA 458
Query: 550 RIDELEAEW---------------ETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 594
++++ + + +T F + + L A E RNL A L++ SAL
Sbjct: 459 QVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWA-ETRNLLDIAYLILKSAL 517
Query: 595 ARHESRGLHYMVDFPHVEENKRLPTII 621
R ESRG HY +D+P + ++ T++
Sbjct: 518 FRTESRGGHYRLDYPQTDPAWQVHTLV 544
|
Length = 553 |
| >gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 444 bits (1145), Expect = e-150
Identities = 217/536 (40%), Positives = 292/536 (54%), Gaps = 51/536 (9%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
+IGSG+A L A E+ V +ITK SN++ AQGG++A + DS H +DT+V
Sbjct: 8 IIGSGIAALTVAKELCHEYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLV 67
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADM 205
AG + ++ VR + EGP I+ELI G FD E G LHL +EG H RI+HA D
Sbjct: 68 AGCHHNNERAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDA 127
Query: 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK 265
TG+ + LL+ +V P+++V E IDL+ + C GV T + E + +
Sbjct: 128 TGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE----NGRCIGVLTKDSEGKLKRYYADY 181
Query: 266 VTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPK 325
V +LASGG G +Y T+N TGDG+AMA+RA A + ++EF+QFHPT L G
Sbjct: 182 V-VLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANG------ 234
Query: 326 KTRENSFLITEAVRGDGGILYNLGMERFM----PLYDERAELAPRDVVARSIDDQLKKRN 381
L++EAVRG+G +L N RFM PL D LAPRDVVAR+I ++L
Sbjct: 235 ---RCVGLVSEAVRGEGAVLINEDGRRFMMGIHPLAD----LAPRDVVARAIHEELLSGE 287
Query: 382 EKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGET 441
+ V L+IS + FP I+A C K G+DI ++ IPVVP AH++ GGV+ L GET
Sbjct: 288 K--VYLNISSIQNFE--ERFPTISALCEKNGVDIETKRIPVVPGAHFLMGGVKTNLDGET 343
Query: 442 NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTR 501
++ GLY GEVACTG+HGANRLASNSLLE LVF +RA + I K + + +
Sbjct: 344 SIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAE-HILTKATKPRLNPFAEKEKK 402
Query: 502 TVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTA-EWRIDELEAEWET 560
+V L TKE E+Q M +YVGIVR+ SL A W
Sbjct: 403 FIVLNHL----------PTKE---EIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMIL 449
Query: 561 YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKR 616
E+ E+ ++ AKL+V SAL R ESRG HY D+PH +
Sbjct: 450 DHDALTNEEI-------ELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRNWRGK 498
|
Length = 510 |
| >gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 425 bits (1094), Expect = e-143
Identities = 204/526 (38%), Positives = 267/526 (50%), Gaps = 58/526 (11%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEP--HESNTNYAQGGVSAVLCPSDSVESHMQDT 144
++G G+AGL AL++A V V++ A P +++ +AQGG++A L P DS H DT
Sbjct: 14 IVGGGLAGLMAALKLAPR-PVVVLSPA-PLGEGASSAWAQGGIAAALGPDDSPALHAADT 71
Query: 145 IVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA- 203
+ AGA LCD ++ E P I +L+ +G FDR DG L L E HS RIVH
Sbjct: 72 LAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGG 131
Query: 204 DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI 263
D G I RAL+ AV + P+I+V E A LL D AV GV L V
Sbjct: 132 DGAGAAIMRALIAAVRATPSITVLEGAEARRLLV--DD-GAVA-GV--LAATAGGPVVLP 185
Query: 264 SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 323
++ +LA+GG G +Y TTNP A G G+A+A RA AVI++ EFVQFHPTA+ P
Sbjct: 186 ARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAIDIGRDPAP 245
Query: 324 PKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEK 383
L TEA+RG+G IL N ERFM AELAPRDVVAR++ ++ +
Sbjct: 246 ---------LATEALRGEGAILINEDGERFMADIHPGAELAPRDVVARAVFAEIA--AGR 294
Query: 384 YVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNV 443
LD + FP + A C G+D QPIPV PAAHY GG+ G +++
Sbjct: 295 GAFLDARAALGAHFATRFPTVYAACRSAGIDPARQPIPVAPAAHYHMGGIAVDADGRSSL 354
Query: 444 RGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTV 503
GL+ AGEVA TGLHGANRLASNSLLEA+VFA RA + D++ +
Sbjct: 355 PGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAE-----------DIAGT---PAAA 400
Query: 504 VPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 563
+R IM R+VG++R L+ A + LEA
Sbjct: 401 AAPLSAAAAPALDPADLALLRP----IMSRHVGVLRDADGLRRAIAALLPLEA------- 449
Query: 564 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
G + A L+ +ALAR ESRG H+ DFP
Sbjct: 450 ---------GAGPA--ADPATVALLIAVAALAREESRGAHFRTDFP 484
|
Length = 513 |
| >gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 404 bits (1040), Expect = e-134
Identities = 212/561 (37%), Positives = 287/561 (51%), Gaps = 62/561 (11%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-----CP 133
+ FD VIG G AGL A+E A+ G VA+++KA P +T AQGG++A L
Sbjct: 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVE 63
Query: 134 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGG 193
DS E H DT+ G L D + V E P+ + EL G F R EDG ++ R GG
Sbjct: 64 GDSPELHFYDTVKGGDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGG 123
Query: 194 HSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 253
HS R AAD TG E+ L E ++ I +F+ +F +DLL G GV +
Sbjct: 124 HSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGG---VAGVVARD 180
Query: 254 VETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 313
+ T E+ F +K +LA+GGAG +YP TTN + TGDG+AMA+RA A + +MEFVQFHPT
Sbjct: 181 LRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHPT 240
Query: 314 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---ERAELAPRDVVA 370
L G LITEAVRG+GGIL N ERFM Y + ELAPRDVV+
Sbjct: 241 GLVGSG------------ILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVS 288
Query: 371 RSIDDQLK------KRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVV 423
R+I +++ YV LD+ H E++ P I K+ G+D +PIPV
Sbjct: 289 RAILMEIREGRGVDGPGGDYVYLDLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVR 348
Query: 424 PAAHYMCGGVRA-GLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPS 482
P HY GG+ + ET + GL+ AGE A HGANRL NSLL+ +VF R A + +
Sbjct: 349 PTVHYTMGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAA 408
Query: 483 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR-----TKEVRKELQSIMWRYVGI 537
++ K S AS +LRR ++R+ELQ +M VGI
Sbjct: 409 AEYAKEKSGSPPASA-VEAER-------ERFDALLRRGGDENPAQIREELQEVMGDNVGI 460
Query: 538 VRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGL---------EACEMRNLFCCAKL 588
R+ L+ A +++L+ E + +A E+ N+ A+
Sbjct: 461 FRNEEGLEKA---LEKLKELRERL-----KDIRVTDKSELFNTDLRDALELGNMLDVAEA 512
Query: 589 VVSSALARHESRGLHYMVDFP 609
V +SALAR ESRG HY D+P
Sbjct: 513 VAASALARTESRGAHYREDYP 533
|
Length = 562 |
| >gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 401 bits (1033), Expect = e-133
Identities = 201/532 (37%), Positives = 289/532 (54%), Gaps = 26/532 (4%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESN-TNYAQGGVSAVLCPSDSVESHMQ 142
D +IGSG AG A+E + V +++K +S T A+GG +AVL P DS E H +
Sbjct: 9 DVLIIGSGGAGARAAIEAERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFE 68
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT+ GAYL D + V ++ E P R+++L GA FDR EDG + GG S +R +A
Sbjct: 69 DTMKGGAYLNDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYA 128
Query: 203 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF 262
D TG E+ L+E ++ + I + E AI L+ + G L++ E+
Sbjct: 129 GDRTGHEMMMGLMEYLIKE-RIKILEEVMAIKLIVD---ENREVIGAIFLDLRNGEIFPI 184
Query: 263 ISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322
+K T+LA+GGAG +YP T+NP+ TGDG A+A+RA A + +ME VQFHPT + +
Sbjct: 185 YAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGM------V 238
Query: 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERAELAPRDVVARSIDDQLKK-- 379
P R L+TEAVRG+GGILYN ERFM YD ER EL+ RDVVAR+I ++++
Sbjct: 239 YPYSGR--GILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGR 296
Query: 380 -RNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQ 438
N V LD++H P E I + + L G+DI +P+ V P AH+ GG+R
Sbjct: 297 GTNHGGVYLDVTHLPDEVIEEKLETMLEQFLDVGVDIRKEPMEVAPTAHHFMGGIRINED 356
Query: 439 GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNW 498
ETN+ GL+ GEVA G+HGANRL N+L + VF A + + + ++ + N
Sbjct: 357 CETNIPGLFACGEVA-GGVHGANRLGGNALADTQVFGAIAGKSAAKNAENN--EFKKVNR 413
Query: 499 WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEW 558
+ + N ++ EL+ MW YV IVR+ L+ A I+EL+ +
Sbjct: 414 SVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEINELKEKL 473
Query: 559 ETYLFEHGWEQTFVGL-EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
+ V +A E+ N+ A+LV+ SAL R ESRG HY D+P
Sbjct: 474 KDLKVN-----GIVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYP 520
|
Length = 543 |
| >gnl|CDD|233582 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Score = 398 bits (1024), Expect = e-132
Identities = 196/527 (37%), Positives = 265/527 (50%), Gaps = 51/527 (9%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDDETVRVVCTE 163
AVI+K P S+T AQGG++A L P DS E H DT+ YL D + V +C E
Sbjct: 2 TAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEYMCQE 61
Query: 164 GPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPN 223
P I EL G F R DG + GGHS R +AAD TG + L E +
Sbjct: 62 APKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKL-G 120
Query: 224 ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTN 283
+S F +FA+DL+ D GV +++T E+V F +K +LA+GG G IY +TTN
Sbjct: 121 VSFFNEYFALDLIHD----DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTN 176
Query: 284 PLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGG 343
+ TGDGMAMA RA + +MEFVQFHPT L G+ LITE RG+GG
Sbjct: 177 AHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPSGI------------LITEGCRGEGG 224
Query: 344 ILYNLGMERFMPLYD-ERAELAPRDVVARSIDDQLKK------RNEKYVLLDISHKPTEK 396
L N ERFM Y E+ ELAPRDVV+R++ ++++ YV LD+ H EK
Sbjct: 225 YLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHLGEEK 284
Query: 397 ILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVR--AGLQGETNVRGLYVAGEVA 453
I P I + G+D +PIPV P AHY GG+ + + V+GL+ AGE A
Sbjct: 285 IEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDVICETRSIVKGLFAAGECA 344
Query: 454 CTGLHGANRLASNSLLEALVFARRA--------VQPSIDHKKSTSIDLSASNWWTRTVVP 505
C +HGANRL NSLLE +VF R A + + A +V
Sbjct: 345 CVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVE 404
Query: 506 KSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFE 564
++ G V ++R+EL M VGI R+ L+ A I+EL ++ + +
Sbjct: 405 RNGGERV--------AKIREELGDTMDDNVGIFRTEELLKKAVDEIEELRERYKNVRIND 456
Query: 565 HG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
+ LEA E+ N+ A++V + AL R ESRG H D+P
Sbjct: 457 KSKVFNTDL--LEALELGNMLDLAEVVAAGALNRKESRGAHAREDYP 501
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase [Energy metabolism, Aerobic, Energy metabolism, Anaerobic, Energy metabolism, TCA cycle]. Length = 541 |
| >gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 374 bits (963), Expect = e-124
Identities = 163/406 (40%), Positives = 246/406 (60%), Gaps = 22/406 (5%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVES 139
Y D ++GSGVAGL AL + K + +++K + +E NT AQGG+S D + S
Sbjct: 2 NLYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNECNTYLAQGGISVARNKDD-ITS 60
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI 199
++DT+ AG Y + E V+++ E + I +LI +G +FD+ E L +EG HS +RI
Sbjct: 61 FVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKE-LSYTKEGAHSVNRI 119
Query: 200 VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEV 259
VH D TG+++E+ LL+ V NI++ E+ + +D++ D C G + ++ +
Sbjct: 120 VHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN----DNTCIG--AICLKDNKQ 173
Query: 260 VRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319
+ SKVT+LA+GG G ++ ++TN + TGDG+A+A R I +++++Q HPTA +E
Sbjct: 174 INIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEE- 232
Query: 320 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK 379
FLI+E+VRG+GG L N ERF+ EL PRDVV ++I +++KK
Sbjct: 233 ------TIEGKKFLISESVRGEGGKLLNSKGERFV------DELLPRDVVTKAILEEMKK 280
Query: 380 RNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQG 439
YV LDI+ + + + FP I ECLK G+DIT IPV PA HY GG++ L
Sbjct: 281 TGSNYVYLDITFLDKDFLKNRFPTIYEECLKRGIDITKDAIPVSPAQHYFMGGIKVDLNS 340
Query: 440 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 485
+T+++ LY GEV+CTG+HGANRLASNSLLE LVF++R + I+
Sbjct: 341 KTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAE-KINS 385
|
Length = 433 |
| >gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 355 bits (913), Expect = e-115
Identities = 196/560 (35%), Positives = 276/560 (49%), Gaps = 58/560 (10%)
Query: 82 YFDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCPS--D 135
+D ++GSG+AGL A+ A+ +VAV++K +P S++ A+GG +AVL P D
Sbjct: 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGD 64
Query: 136 SVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS 195
S + H DT+ +L D + V V E P+ IR L G + R DG + GG S
Sbjct: 65 SFDLHAYDTVKGSDFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMS 124
Query: 196 HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE 255
R AAD TG I L + NI ++ HF L+ + V GV ++++
Sbjct: 125 FPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVE----NGVFKGVTAIDLK 180
Query: 256 TQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315
E F +K ++A+GGAG +Y TT TGDG+A+A+RA + +MEFVQFHPT L
Sbjct: 181 RGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHPTGL 240
Query: 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVARSI- 373
G+ LITEA RG+GG L N ERFM Y ++ ELAPRDVV+R+I
Sbjct: 241 VPSGI------------LITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIM 288
Query: 374 DDQLKKRNEK------YVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAA 426
+ ++ R K YV LD+ H EKI P I KY G+D ++PIPV PAA
Sbjct: 289 TEIMEGRGFKHESGLCYVGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAA 348
Query: 427 HYMCGGVRAGLQGET------NVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR---- 476
HY GG+ + G VRGL+ AGE A +HGANRL SNS E LV+ R
Sbjct: 349 HYTMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGE 408
Query: 477 ----RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMW 532
A++ + ++ K G + E+R+EL IM
Sbjct: 409 QAAEYALKRPAPSSPVEKLAEKEEKRIFDKLLKKEGGEP--------SYEIRRELNDIMD 460
Query: 533 RYVGIVRSTTSLQTAEWRIDEL-EAEWETYLFEHG--WEQTFVGLEACEMRNLFCCAKLV 589
+ GI R + L A +I +L E + + + +A E+ + A++V
Sbjct: 461 KNFGIFRDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTDLK--DALELDGMLDLAEVV 518
Query: 590 VSSALARHESRGLHYMVDFP 609
AL R ESRG HY +D+P
Sbjct: 519 AIGALLRTESRGAHYRLDYP 538
|
Length = 577 |
| >gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 346 bits (890), Expect = e-111
Identities = 194/560 (34%), Positives = 282/560 (50%), Gaps = 58/560 (10%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESH 140
+D ++G+G AG+ A+E AV+TK P S+T AQGG+ A L D+ E H
Sbjct: 6 YDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWH 65
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH---- 196
DT+ G YL D + ++ E D + +L +G F+R +G + R GGH+
Sbjct: 66 TFDTVKGGDYLVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGK 125
Query: 197 ---HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 253
R +AAD TG I + L + V + F + +DLL T V GV
Sbjct: 126 APVRRACYAADRTGHMILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYE 184
Query: 254 VETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 313
+ T E+ F +K + A+GG+G +Y +T+N TGDGM + R + +MEF QFHPT
Sbjct: 185 LATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQFHPT 244
Query: 314 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-----AELAPRDV 368
LA GL I LI+EA RG+GGIL N ERFM ER +LAPRD+
Sbjct: 245 GLA--GLGI----------LISEAARGEGGILRNAEGERFM----ERYAPTIKDLAPRDI 288
Query: 369 VARSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPV 422
VARS+ ++++ N+ YV LD++H E + + P+I Y G+D +P+PV
Sbjct: 289 VARSMVLEVREGRGAGPNKDYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPV 348
Query: 423 VPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 476
P AHY GG+ + GE T V GLY AGE AC +HGANRL +NSLL+ VF R
Sbjct: 349 YPTAHYAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGR 408
Query: 477 RAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRT-KE----VRKELQSI 530
RA + ++ + +DL + P+++ + ++L E +R ELQ
Sbjct: 409 RAGIAAAEYARGADFVDLPEN--------PEAMVVEWVEDLLSEHGNERVADIRGELQQS 460
Query: 531 MWRYVGIVRSTTSLQTAEWRIDELEAEWETY-LFEHGWEQTFVGLEACEMRNLFCCAKLV 589
M + R+ +L+ A I L+ ++ + + G LEA E+ L A++
Sbjct: 461 MDNNASVFRTEETLKQALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVT 520
Query: 590 VSSALARHESRGLHYMVDFP 609
V AL R ESRG H D+P
Sbjct: 521 VVGALNRKESRGGHAREDYP 540
|
Length = 583 |
| >gnl|CDD|130875 TIGR01816, sdhA_forward, succinate dehydrogenase, flavoprotein subunit, E | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-110
Identities = 194/539 (35%), Positives = 261/539 (48%), Gaps = 63/539 (11%)
Query: 107 VAVITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEG 164
A +TK P S+T AQGG+SA L D+ HM DT+ +L D + + +C +
Sbjct: 8 TACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQA 67
Query: 165 PDRIRELIAIGASFDRGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLE 216
P+ + EL +G F R EDG ++ GGH+ R AAD TG I L +
Sbjct: 68 PEAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQ 127
Query: 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276
+ + S F +FA+DLL DG C GV +ET E+ RF +K +LA+GG G
Sbjct: 128 QNLKA-DTSFFNEYFALDLLME-DGE---CRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182
Query: 277 IYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITE 336
IY STTN TGDG M RA + +MEFVQFHPT +A G LITE
Sbjct: 183 IYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGC------------LITE 230
Query: 337 AVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKK-----RNEKYVLLDIS 390
RG+GGIL N ERFM Y A +LA RDVV+RS+ ++++ N+ +V LD+
Sbjct: 231 GCRGEGGILINANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLD 290
Query: 391 HKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGE--------- 440
H E + P I+ + G+D PIPV+P HY GG+ G+
Sbjct: 291 HLGPEVLEGRLPGISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGND 350
Query: 441 TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA-------VQPSIDHKKSTSIDL 493
V GLY AGE AC +HGANRL +NSLL+ +VF R A +P D K
Sbjct: 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPGSDVKPMPPNAG 410
Query: 494 SASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDE 553
S + + G V +R ELQ M + G+ R+ LQ +I
Sbjct: 411 EESVMRLDKLRFATGGERV--------AALRLELQRSMQNHAGVFRTGEVLQKGVEKISA 462
Query: 554 LEAEWE-TYLFEHG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
L+ ++ + + W V EA E++NL CA+ SA AR ESRG H DFP
Sbjct: 463 LKERYKNVKINDKSKVWNTDLV--EALELQNLLECAEATAVSAEARKESRGAHAREDFP 519
|
coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, This model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase [Energy metabolism, TCA cycle]. Length = 565 |
| >gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = e-100
Identities = 196/571 (34%), Positives = 284/571 (49%), Gaps = 68/571 (11%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
FD ++G+G +G+ +L++A+ G +VAV++K P S+T AQGG+ A L D+
Sbjct: 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHY 72
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 197
H DTI +L D + + +C E P+ + EL G FDR DG ++ GGH+ +
Sbjct: 73 HFYDTIKGSDWLGDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYG 132
Query: 198 -----RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
R AAD TG + L + V+ F A+DL+ DG GV L
Sbjct: 133 EKPVQRACAAADRTGHALLHTLYQQNVA-AKTQFFVEWMALDLIRDADGD---VLGVTAL 188
Query: 253 NVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 312
+ET +V +K TL A+GGAG I+ ++TN + TGDG+ MA RA + +MEF QFHP
Sbjct: 189 EMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHP 248
Query: 313 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVAR 371
T +A G+ LITE VRG+GGIL N ERFM Y +LAPRD V+R
Sbjct: 249 TGVAGAGV------------LITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSR 296
Query: 372 SIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIPVVPA 425
S+D ++K+ N +VLLD++H E I+ P+I LK+ +D +PIPVVP
Sbjct: 297 SMDQEIKEGRGCGPNGDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPT 356
Query: 426 AHYMCGGVRAGLQG---ETN------VRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 476
HY GG+ + G T+ V G Y GE +C +HGANRL +NSLL+ +VF R
Sbjct: 357 IHYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGR 416
Query: 477 RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR------------TKEVR 524
A +DH K K L + L R ++V
Sbjct: 417 AAGNHIVDHVKKQH-------------EHKPLPADAADFSLARLAKLDKSTSGEYAQDVA 463
Query: 525 KELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHGWEQTFVGLEACEMRNLF 583
++++ M ++ G+ R+ L +I L E +L + +EA E+ NL
Sbjct: 464 NDIRATMQKHAGVFRTQALLDEGVEQILALAERVENIHLKDKSKVFNTARVEALEVANLI 523
Query: 584 CCAKLVVSSALARHESRGLHYMVDFPHVEEN 614
A+ + SA AR ESRG H D+ H ++
Sbjct: 524 EVARATMVSAAARKESRGAHAHSDYEHRDDE 554
|
Length = 591 |
| >gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = 3e-97
Identities = 190/572 (33%), Positives = 278/572 (48%), Gaps = 76/572 (13%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
+D V+G+G AGL AL + + G A I+K P S+T AQGG++A L D
Sbjct: 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRW 89
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 197
H DT+ +L D + ++ +C E P + EL + G F R +DG ++ GG S
Sbjct: 90 HAYDTVKGSDWLGDQDAIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFG 149
Query: 198 ------RIVHAADMTGREIERALLEAVVSDP---NISVFEHHFAIDLLTTLDGPDAVCHG 248
R AAD TG A+L + + + F +FA+DL+ DG C G
Sbjct: 150 KGGQAYRCAAAADRTGH----AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGE---CRG 202
Query: 249 VDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 308
V +++E + RF + T++A+GG G Y S T+ TGDG AM RA + ++EFV
Sbjct: 203 VIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFV 262
Query: 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRD 367
QFHPT + G LITE RG+GGIL N ERFM Y A +LA RD
Sbjct: 263 QFHPTGIYGAGC------------LITEGCRGEGGILRNSEGERFMERYAPTAKDLASRD 310
Query: 368 VVARSIDDQLKKR-----NEKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPI 420
VV+R++ ++ + N+ ++ LD++H P E + P I +E K G+D+T +PI
Sbjct: 311 VVSRAMTIEILEGRGCGPNKDHIYLDLTHLPPETLHERLPGI-SETAKIFAGVDVTKEPI 369
Query: 421 PVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGEVACTGLHGANRLASNSLLE 470
PV+P HY GG+ + + V GL AGE AC +HGANRL +NSLL+
Sbjct: 370 PVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLD 429
Query: 471 ALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG---CNVMHNIL-----RRTKE 522
+VF R A ++ K PK G + I T +
Sbjct: 430 IVVFGRAAANTVMEILKPGRPQPDL---------PKDAGEASIARLDKIRHNKGDISTAQ 480
Query: 523 VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG----LEACE 578
+RK +Q M ++ + R SLQ +I E+ ++++ + +++ V +E E
Sbjct: 481 IRKRMQRTMQKHAAVFRIGESLQEGVEKIKEIYSDFK-DVKIK--DKSLVWNTDLIETLE 537
Query: 579 MRNLFCCAKLVVSSALARHESRGLHYMVDFPH 610
+ NL AK + SA AR ESRG H DFP
Sbjct: 538 LENLLTQAKQTILSAEARKESRGAHARDDFPE 569
|
Length = 617 |
| >gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 302 bits (776), Expect = 5e-95
Identities = 190/564 (33%), Positives = 285/564 (50%), Gaps = 55/564 (9%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC----PSDSV 137
+D VIG G+AGL A E+A G VAVI+K P S++ A+GG++A + P+D+
Sbjct: 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNP 65
Query: 138 ESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH 197
+ DT+ G YL D + ++ + + + L GA F+R DG + + GG ++
Sbjct: 66 DYMTYDTVKGGDYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYP 125
Query: 198 RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ 257
R D TG + L E S N+ + F++DL+T + G+ + ++T
Sbjct: 126 RTRFVGDKTGMALLHTLFERT-SGLNVDFYNEWFSLDLVTD----NKKVVGIVAMQMKTL 180
Query: 258 EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317
F +K +LA+GG G +Y TTN + TGDG +A RA A + + EFVQFHPTAL
Sbjct: 181 TPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTAL-- 238
Query: 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVARSIDDQ 376
+ LI+EA RG+GGIL N+ ERFM Y ++ +LAPRD+V+R+I +
Sbjct: 239 ----------YPSDVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITE 288
Query: 377 LKKRN---EKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPIPVVPAAHYMCG 431
+++ YV LD++H E I +A E K G+D ++PIPV PA HY G
Sbjct: 289 IREGRGFPGGYVGLDLTHLGEEYIKERLA-LAVEAAKSFAGVDAFTEPIPVRPAQHYYMG 347
Query: 432 GVRAGLQGET-NVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR---RAV-------- 479
G+ + G ++ GL+ AGE AC +HGANRL SNSLL+ LVF + R V
Sbjct: 348 GIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKSNP 407
Query: 480 -QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIV 538
P+ +++K + + V G + ++ ++L+ MW YVGI
Sbjct: 408 GNPTSNYEKEAEKVVDDA----YKFVKSESGVHF--------GQILEKLRDTMWDYVGIY 455
Query: 539 RSTTSLQTAEWRIDELEAEWET-YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARH 597
R L A I++L Y+ + A E+RN+ A ++ SAL R
Sbjct: 456 RDEGGLLNAMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERK 515
Query: 598 ESRGLHYMVDFPHVEENKRLPTII 621
ESRG HY D+P ++N L I
Sbjct: 516 ESRGAHYRTDYPDRDDNNWLKHTI 539
|
Length = 566 |
| >gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 302 bits (776), Expect = 1e-94
Identities = 190/573 (33%), Positives = 293/573 (51%), Gaps = 70/573 (12%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLC---PSDS 136
D ++G G+AG ALE+ + VAV+ K P S++ AQGG++A L P DS
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDS 63
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E+H DT+ YL D + V ++ E PD I +L +G F R DG + GGHSH
Sbjct: 64 WEAHAFDTVKGSDYLADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSH 123
Query: 197 HRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 253
+R +AAD TG A+L +V++ +++++ + + L+ D GV +
Sbjct: 124 NRTCYAADKTGH----AILHELVNNLRRYGVTIYDEWYVMRLILE----DNQAKGVVMYH 175
Query: 254 VETQ--EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
+ EVVR +K + A+GG G ++ +T+N +TGDG+AM A + +MEFVQFH
Sbjct: 176 IADGRLEVVR--AKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFH 233
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVA 370
PT L G+ LI+EAVRG+G L N +RFM Y R ELAPRD+ +
Sbjct: 234 PTGLYPVGV------------LISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITS 281
Query: 371 RSIDDQLK---------KRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPI 420
R+I +++ +V LD+ H EKI+S P E + G+D ++P+
Sbjct: 282 RAITLEIRAGRGINPDGSAGGPFVYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPM 341
Query: 421 PVVPAAHYMCGGV------RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
PV P HY GG+ R + V G + AGE AC +HGANRL SNSLLE +V+
Sbjct: 342 PVRPTVHYCMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVY 401
Query: 475 ARR---AVQPSIDHKKSTSID----LSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKEL 527
RR A+ + +K +D L + + ++ +S R ++R++
Sbjct: 402 GRRTGAAIAEYVQGRKLPEVDEQRYLKEAKQRIQALLDQSGTY--------RINQLRQQF 453
Query: 528 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHG--WEQTFVGLEACEMRNLFC 584
Q M + G+ R+ +Q +I +L+ ++E YL + G W + EA E+R+L
Sbjct: 454 QDCMTDHCGVFRTEEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELI--EALELRSLMV 511
Query: 585 CAKLVVSSALARHESRGLHYMVDFPHVEENKRL 617
+++++SAL R ESRG H D+P ++ L
Sbjct: 512 VGEIILTSALNRQESRGAHSREDYPQRDDQNFL 544
|
Length = 575 |
| >gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 6e-91
Identities = 175/568 (30%), Positives = 268/568 (47%), Gaps = 67/568 (11%)
Query: 84 DFSVIGSGVAGLCYALEVAK---HGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 140
D ++IG+G AGL A+ A+ + +A+I+K P S+T A+GG +AV DS + H
Sbjct: 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYH 65
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 200
DT+ G +LC+ + V P + +L G + R DG++++ R GG R
Sbjct: 66 FHDTVAGGDWLCEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTW 125
Query: 201 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 260
AAD TG + L + + P I F+ HF +D+L D G+ +N+ +V
Sbjct: 126 FAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD----DGHVRGLVAMNMMEGTLV 181
Query: 261 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 320
+ + ++A+GGAG +Y TN + TGDGM MA+R + +MEFVQ+HPT L G+
Sbjct: 182 QIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLPGSGI 241
Query: 321 PIKPKKTRENSFLITEAVRGDGGIL-----------YNLGMERFMPLYDER---AELAPR 366
L+TE RG+GGIL Y LG E PL + + EL PR
Sbjct: 242 ------------LMTEGCRGEGGILVNKDGYRYLQDYGLGPE--TPLGEPKNKYMELGPR 287
Query: 367 DVVARSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQP 419
D V+++ + +K N V LD+ H +K+ P I Y G+D +P
Sbjct: 288 DKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEP 347
Query: 420 IPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 479
IPV P AHY GG+ ET ++GL+ GE + GLHGANRL SNSL E +VF R A
Sbjct: 348 IPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAG 407
Query: 480 QPSIDH-KKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR-----RTKEVRKELQSIMWR 533
+ + + + + +A + V + + ++ ++R E+ M
Sbjct: 408 EQAAERAATAGPGNEAALDAQAADVEQR------LKALVNQEGGENWAKIRDEMGLSMEE 461
Query: 534 YVGIVRSTTSLQTAEWRIDELEAEWETY-------LFEHGWEQTFVGLEACEMRNLFCCA 586
GI R+ +Q ++ EL+ ++ +F L E+ A
Sbjct: 462 GCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDL------LYTIELGYGLDVA 515
Query: 587 KLVVSSALARHESRGLHYMVDFPHVEEN 614
+ + SALAR ESRG H +D E +
Sbjct: 516 ECMAHSALARKESRGAHQRLDEGCTERD 543
|
Length = 582 |
| >gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 8e-91
Identities = 182/558 (32%), Positives = 268/558 (48%), Gaps = 47/558 (8%)
Query: 84 DFSVIGSGVAGLCYALEVAK---HGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 140
D +VIG+G AGL A+ A+ H VA+I+K P S+T A+GG +AV DS++ H
Sbjct: 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEH 64
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 200
DT+ G +LC+ + V E P + +L G + R DG +++ R GG R
Sbjct: 65 FHDTVSGGDWLCEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTW 124
Query: 201 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 260
AAD TG + L + ++ P I ++ F DLL D G+ + + +V
Sbjct: 125 FAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD----DGRVCGLVAIEMAEGRLV 180
Query: 261 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 320
++ +LA+GGAG +YP TN + TGDGMAMA R + +MEFVQ+HPT L G+
Sbjct: 181 TILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPGTGI 240
Query: 321 PIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD------------ERAELAPRDV 368
L+TE RG+GGIL N R++ Y + EL PRD
Sbjct: 241 ------------LMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDK 288
Query: 369 VARSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIP 421
V+++ + K N V LD+ H + + P I Y +D +PIP
Sbjct: 289 VSQAFWHEHNKGNTIDTPYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIP 348
Query: 422 VVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 481
V P HY GG+ + ET ++GL+ GE A GLHGANRL SNSL E +VF RRA +
Sbjct: 349 VRPTVHYTMGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEA 408
Query: 482 SID----HKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGI 537
+ + H+KS + A RTV + L + + ++R E+ + M GI
Sbjct: 409 AAERAARHQKSNESAIRAQ---ARTVELR-LERLLSQHGGENWADIRAEMGATMESGCGI 464
Query: 538 VRSTTSLQTAEWRIDELEAEWETY-LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596
R +Q ++ EL+ ++ + +H L E+ A+ +V SAL R
Sbjct: 465 YRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRR 524
Query: 597 HESRGLHYMVDFPHVEEN 614
ESRG H +D E +
Sbjct: 525 KESRGAHQRLDEGCTERD 542
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. Length = 580 |
| >gnl|CDD|180193 PRK05675, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 9e-91
Identities = 190/550 (34%), Positives = 274/550 (49%), Gaps = 63/550 (11%)
Query: 98 ALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCD 153
AL++A+ G AV+TK P S+T AQGG++ + P+D HM DT+ Y+ D
Sbjct: 4 ALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGD 63
Query: 154 DETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH--------RIVHAADM 205
+ + +C+ GP+ + EL +G F R E G ++ GG S R AAD
Sbjct: 64 QDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADR 123
Query: 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK 265
TG + L + + + + +A+DL+ DG AV GV + +ET E V SK
Sbjct: 124 TGHALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDG--AVV-GVIAICIETGETVYIKSK 179
Query: 266 VTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPK 325
T+LA+GGAG IY STTN L+ TGDG+ MA RA + ++E QFHPT +A G+
Sbjct: 180 ATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGV----- 234
Query: 326 KTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARS-IDDQLKKR--- 380
L+TE RG+GG L N ERFM Y A +LA RDVVARS + + L
Sbjct: 235 -------LVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCG 287
Query: 381 -NEKYVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIPVVPAAHYMCGGVRAGLQ 438
N+ +VLL + H E + S P I + +D PIPVVP HYM GGV +
Sbjct: 288 PNKDHVLLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIH 347
Query: 439 G----------ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR-------RAVQP 481
G + + GL+ GEVAC +HGANRL NSLL+ +VF R +A++
Sbjct: 348 GQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKE 407
Query: 482 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRST 541
I+++ ++ D+ A+ + ++ G +V +R+ELQS M Y G+ R+
Sbjct: 408 GIEYRDASESDIDAALARLNKLNERTGGEDV--------AALRRELQSCMQNYFGVFRTG 459
Query: 542 TSLQTAEWRIDELEAEWETYLFEHGWEQTF--VGLEACEMRNLFCCAKLVVSSALARHES 599
+Q ++ +L Q F +EA E++NL A+ +A R ES
Sbjct: 460 EYMQKGIAQLADLRERIANVKINDK-SQAFNTARIEALELQNLLEVAEATAIAAEVRKES 518
Query: 600 RGLHYMVDFP 609
RG H DF
Sbjct: 519 RGAHAREDFE 528
|
Length = 570 |
| >gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 283 bits (725), Expect = 4e-87
Identities = 193/570 (33%), Positives = 283/570 (49%), Gaps = 68/570 (11%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS--DS 136
V+ FD VIG+G AG+ AL++++ G + A+++K P S+T AQGG++ L + D+
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDN 64
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E HM DT+ Y+ D + + +C GP+ I EL +G F R +DG ++ GG S
Sbjct: 65 WEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSK 124
Query: 197 H-------RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
+ R AAD TG + L + + + + ++F +A+DL+ DG AV G
Sbjct: 125 NFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDG--AVV-GC 180
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309
+ +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME Q
Sbjct: 181 TAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQ 240
Query: 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDV 368
FHPT +A G+ L+TE RG+GG L N ERFM Y A +LA RDV
Sbjct: 241 FHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDV 288
Query: 369 VARSIDDQLKK-RNEK-----YVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIP 421
VARSI ++++ R + L + H E + S P I + +D +PIP
Sbjct: 289 VARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIP 348
Query: 422 VVPAAHYMCGGVRAGLQG----------ETNVRGLYVAGEVACTGLHGANRLASNSLLEA 471
V+P HYM GG+ + G + V GL+ GE+AC +HGANRL NSLL+
Sbjct: 349 VIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDL 408
Query: 472 LVFARRA---VQPSIDH----KKSTSIDLSAS----NWWTRTVVPKSLGCNVMHNILRRT 520
+VF R A +Q S+ + ++ D+ AS N W ++ V
Sbjct: 409 VVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNRWNNN---RNGEDPV-------- 457
Query: 521 KEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHGWEQTFVGLEACEM 579
++RK LQ M + R ++ + + + L + E +E E+
Sbjct: 458 -QIRKALQECMQNNFSVFREGDAMAKGLEELKVIRERLKNARLDDTSSEFNTQRIECLEL 516
Query: 580 RNLFCCAKLVVSSALARHESRGLHYMVDFP 609
NL A SA R ESRG H DFP
Sbjct: 517 DNLMETAYATAVSANFRTESRGAHSRFDFP 546
|
Length = 588 |
| >gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Score = 282 bits (724), Expect = 2e-86
Identities = 192/574 (33%), Positives = 275/574 (47%), Gaps = 82/574 (14%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
+D V+G+G AGL A+ +++HG A ITK P S+T AQGG++A L D
Sbjct: 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRW 110
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---- 195
HM DT+ +L D + ++ +C E P + EL G F R EDG ++ GG S
Sbjct: 111 HMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFG 170
Query: 196 ----HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDT 251
+R AAD TG + L + N F +FA+DL+ DG C GV
Sbjct: 171 KGGQAYRCACAADRTGHAMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDG---ACQGVIA 226
Query: 252 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
LN+E + RF + T+LA+GG G Y S T+ TGDG AM RA + ++EFVQFH
Sbjct: 227 LNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFH 286
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVA 370
PT + G LITE RG+GGIL N ERFM Y A +LA RDVV+
Sbjct: 287 PTGIYGAGC------------LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVS 334
Query: 371 RSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVP 424
RS+ ++++ + ++ L ++H P E + P I+ + G+D+T +PIPV+P
Sbjct: 335 RSMTMEIREGRGVGPEKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLP 394
Query: 425 AAHYMCGGVRAGLQGE----------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 474
HY GG+ GE V GL AGE AC +HGANRL +NSLL+ +VF
Sbjct: 395 TVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVF 454
Query: 475 AR-------RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNI--LR------R 519
R +P K +PK G + + LR
Sbjct: 455 GRACANRVAEIAKPGEKQKP----------------LPKDAGEKTIAWLDKLRNANGSLP 498
Query: 520 TKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG----LE 575
T ++R +Q +M + R+ +L+ IDE W+++ +++ + +E
Sbjct: 499 TSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDEA---WDSFHDVKVTDRSLIWNSDLIE 555
Query: 576 ACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
E+ NL A + + SA AR ESRG H DF
Sbjct: 556 TLELENLLINACITMHSAEARKESRGAHAREDFT 589
|
Length = 635 |
| >gnl|CDD|236375 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 1e-85
Identities = 187/583 (32%), Positives = 265/583 (45%), Gaps = 100/583 (17%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
+D V+G+G AGL L +A+ G A ITK P S+T AQGG+SA L D
Sbjct: 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRW 72
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 197
HM DT+ +L D + + +C E P + EL G F R E+G ++ GG + +
Sbjct: 73 HMYDTVKGSDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYG 132
Query: 198 ------RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDT 251
R AAD TG I L + + N F +FA+DL+ VC GV
Sbjct: 133 KGPPAQRTCAAADRTGHAILHTLYQQSLKH-NAEFFIEYFALDLIMD---DGGVCRGVVA 188
Query: 252 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
N++ + RF + + +LA+GG G Y S T+ TGDG M RA + +MEFVQFH
Sbjct: 189 WNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFVQFH 248
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVA 370
PT + G LITE RG+GG L N ERFM Y A +LA RDVV+
Sbjct: 249 PTGIYGAGC------------LITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVS 296
Query: 371 RSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPIPVV 423
R++ ++++ + + ++ L + H E + P I +E K G+D+T +PIPV+
Sbjct: 297 RAMTIEIREGRGVGKKKDHIFLHLDHLDPEVLHERLPGI-SESAKIFAGVDVTKEPIPVL 355
Query: 424 PAAHYMCGGVRAGLQGE----------TNVRGLYVAGEVACTGLHGANRLASNSLLEALV 473
P HY GG+ GE V GL GE AC +HGANRL SNSL++ +V
Sbjct: 356 PTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVV 415
Query: 474 FARRA-------VQPSIDHK--KSTSIDLSASNWWTRTVVPKSLGCNVMHNILR------ 518
F R A ++P H + D + + + LR
Sbjct: 416 FGRAAALRAAEVIKPGAPHPPLPKDACDKALDRF----------------DRLRHANGGT 459
Query: 519 RTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE------------WETYLFEHG 566
T E+R ++Q M + R+ L+ +I E+ A W + L
Sbjct: 460 PTAELRLKMQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDL---- 515
Query: 567 WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
+E E+ NL A + + SA R ESRG H DFP
Sbjct: 516 -------VETLELDNLMAQAVVTMESAENRKESRGAHAREDFP 551
|
Length = 598 |
| >gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 3e-85
Identities = 151/419 (36%), Positives = 190/419 (45%), Gaps = 58/419 (13%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-----SDSVESH 140
VIGSG+AGL ALE A+ G VAV+ K +P T ++ GG+ A+ P DS + H
Sbjct: 4 VIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLH 63
Query: 141 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-LHLAREGGHSHHRI 199
DT+ L D V P+ + L A+G F R + + L GG S
Sbjct: 64 PTDTLKGLDELADHPYVEAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLS-ATW 122
Query: 200 VHAADM---------TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVD 250
D+ TG + LLE + I H A DL+ D GV
Sbjct: 123 RTPHDVADRRRGTLGTGHALLARLLEGALKRG-IDFQPRHPADDLIVE----DGRVTGVV 177
Query: 251 TLNVETQEVVRFISKV-TLLASGGAGH---------IYPSTTNPLVATGDGMAMAHRAQA 300
N VR + LLA+GG G Y TT P TGDG+A+A RA A
Sbjct: 178 VENRRNGREVRIRAIAGVLLATGGFGRNAELLLPAAGYADTTGPPANTGDGIALALRAGA 237
Query: 301 VISN--MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 358
+++ MEFVQFHPT+L I R S L+ EA+RG+GGIL N RFM
Sbjct: 238 ALTDDLMEFVQFHPTSL----PGI-----RLGSGLLIEALRGEGGILVNDDGRRFM---- 284
Query: 359 ERAELAPRDVVARSIDDQLKKRNEK-YVLLDISHK-PTEKILSHFPNIAAEC-LKYGLDI 415
ELA RDVV+R+I +V LD E + + P E +D
Sbjct: 285 --NELASRDVVSRAITRNEIDEGRGAHVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDP 342
Query: 416 TSQPIPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTGLHGANRLASNSL 468
+PIPV PA HY GGVR G + GLY AGEVAC G+HGANRL NSL
Sbjct: 343 YDRPIPVFPAQHYTMGGVRTDENGRVLDADGQPIPGLYAAGEVACGGVHGANRLGGNSL 401
|
This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 |
| >gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 7e-85
Identities = 194/597 (32%), Positives = 281/597 (47%), Gaps = 91/597 (15%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVE 138
+D VIG+G AGL A+E + G VAV+ K+ +++T A+GG +A + P D+ +
Sbjct: 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQ 68
Query: 139 SHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHR 198
H +DT+ G +L + + E PDR+ EL GA FDR +DG + GGH++ R
Sbjct: 69 VHFRDTMRGGKFLNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPR 128
Query: 199 IVHAADMTGREIERALLEAVVS------------DPNISVFEHHFAIDLLTTLDGPDAVC 246
+ H D TG E+ R L + +VS + I VF +LL DG +
Sbjct: 129 LAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLK--DG-GRIA 185
Query: 247 HGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNME 306
G E+ V F + +LA+GG G + T+N TGDG A+A RA A + NME
Sbjct: 186 -GAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLINME 244
Query: 307 FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-------- 358
FVQFHPT + + P + L+TE VRGDGG+L N +RFM Y
Sbjct: 245 FVQFHPTGM------VWPPSVK--GILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQY 296
Query: 359 ----ERA--------------ELAPRDVVARSIDDQLKK-RNEKY--VLLDI-SHKPTEK 396
E A EL PRD VAR+I+ ++K R + V LDI S P E+
Sbjct: 297 AETEEEADRWYKDNDNNRRPPELLPRDEVARAINSEVKAGRGSPHGGVYLDIASRLPAEE 356
Query: 397 ILSHFPNIAAECLKYG-LDITSQPIPVVPAAHYMCGGVRAGLQ-GETNVRGLYVAGEVAC 454
I P++ + + +DIT +P+ V P HY+ GGV G V GL+ AGE A
Sbjct: 357 IKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGGVEVDPDTGAATVPGLFAAGECA- 415
Query: 455 TGLHGANRLASNSLLEALVFARRAVQPSIDHKKS---------TSIDLSASNWWTRTVVP 505
G+HG+NRL NSL + LVF RRA + D+ + ++D +A+
Sbjct: 416 GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVD-AAAREALAPFER 474
Query: 506 KSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE------ 559
+ N + ELQ M VGI+R ++ A ++ EL+
Sbjct: 475 PAGAEN--------PYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEG 526
Query: 560 TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKR 616
+ GW A ++RN+ ++ V +AL R ESRG H D P ++ R
Sbjct: 527 HRQYNPGWHL------ALDLRNMLLVSECVARAALERTESRGGHTRDDHPGMDPEWR 577
|
Length = 626 |
| >gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 3e-73
Identities = 165/539 (30%), Positives = 240/539 (44%), Gaps = 90/539 (16%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
++G G+AGL A+ +AK G I +SN+ AQ G++ + DS+ +H+ DTI
Sbjct: 6 IVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIR 65
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206
AG Y+ D+E V V ++ + L ++G F+ E EGGHS R+ + T
Sbjct: 66 AGKYINDEEVVWNVISKSSEAYDFLTSLGLEFEGNE-------LEGGHSFPRVFTIKNET 118
Query: 207 GREIERAL-LEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS 264
G+ I + L A N I F AI + +GV E+++F
Sbjct: 119 GKHIIKILYKHARELGVNFIRGFAEELAIK--------NGKAYGV----FLDGELLKF-- 164
Query: 265 KVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKP 324
T++A+GG ++ T + G + A A ++EFVQFHPT
Sbjct: 165 DATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIG------- 217
Query: 325 KKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKY 384
+ ++LI+EAVRG G L ERF+ EL RD+VAR+I K + K
Sbjct: 218 ---KRGTYLISEAVRGAGAKLVTGDGERFV------NELETRDIVARAI--YRKMQEGKG 266
Query: 385 VLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVR 444
V LD + E FP I A K G+D + IPV P AHY GG+ T ++
Sbjct: 267 VFLDATG--IEDFKRRFPQIYAFLRKEGIDPSRDLIPVTPIAHYTIGGISVDTFYRTGIK 324
Query: 445 GLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVV 504
LY GE A G HGANRLASNSLLE +V + ++++ RT+
Sbjct: 325 NLYAIGEAASNGFHGANRLASNSLLECIV---------------SGLEVA------RTIS 363
Query: 505 ---PKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 561
PK +V ++ I+W + GIVRS SL+ +++ +EA+
Sbjct: 364 RERPKLREVKEPPYHGYELGDV-DSIREILWNHAGIVRSEESLREGLKKLEGIEAD---- 418
Query: 562 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTI 620
L AK V+ ALAR ESRG HY DFP + + P+
Sbjct: 419 ------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRKEFERPSF 459
|
Length = 466 |
| >gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 7e-73
Identities = 183/588 (31%), Positives = 266/588 (45%), Gaps = 94/588 (15%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS---- 134
+ Y D VIG+G+AGL A+ A+ G V++ S++ AQGG+ A L +
Sbjct: 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGE 62
Query: 135 -DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-------- 185
D+ + H DT+ + CD E R+ P +REL A G + R G
Sbjct: 63 GDNEDVHFADTVKGSDWGCDQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGE 122
Query: 186 ------------LHLARE-GGHSHHRIVHAADMTGREIERALLEAV---VSDPNISVFEH 229
L AR+ GG R + AD TG +L AV + V +
Sbjct: 123 KVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGH----TMLYAVDNEAIKLGVPVHDR 178
Query: 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATG 289
AI L+ DG C+G + T E+ +++K TL+A+GG G IY TTN ++ G
Sbjct: 179 KEAIALIH--DG--KRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEG 234
Query: 290 DGMAMAHRAQ-AVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNL 348
G A+A A + NME VQFHPTA+ G+ L+TE RGDGG+L +
Sbjct: 235 IGAAIALETGVAPLGNMEAVQFHPTAIVPSGI------------LVTEGCRGDGGLLRDK 282
Query: 349 GMERFMPLYD-ERAELAPRDVVARSIDDQLKK------RNEKYVLLDISHKPTEKILSHF 401
RFMP Y+ E+ ELA RDVV+R + + ++K ++ LDI + I ++
Sbjct: 283 DGYRFMPDYEPEKKELASRDVVSRRMTEHIRKGKGVKSPYGPHLWLDIRILGRKHIETNL 342
Query: 402 PNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET-NVRGLYVAGEVACTGLHG 459
+ C + G+D IPV P HY GG+R GE+ ++GL+ AGE AC +HG
Sbjct: 343 REVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGESYGLKGLFSAGEAACWDMHG 402
Query: 460 ANRLASNSLLEALVFARRAVQPSI-DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR 518
NRL NSL E +V A V + D +++ + V K + + ++
Sbjct: 403 FNRLGGNSLAETVV-AGMIVGKYVADFCLGNELEIDTAL--VEKFVKKQQ--DRIDELIA 457
Query: 519 RTK-----EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG 573
E++ E+Q IM VGI R+ L+ A + EL+ L E +G
Sbjct: 458 GEGKENVFEIKNEMQEIMMEKVGIFRNGPELEKA---VKELQE-----LLE---RSKNIG 506
Query: 574 L------------EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
L EA + + A V ALAR ESRG H D+P
Sbjct: 507 LKSKKRGANPELEEALRVPRMLKLALCVAYGALARTESRGAHAREDYP 554
|
Length = 657 |
| >gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 7e-59
Identities = 147/580 (25%), Positives = 243/580 (41%), Gaps = 83/580 (14%)
Query: 87 VIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHM 141
V+G+G+AG A ++A+ G P +++ AQGG++ + DS H
Sbjct: 3 VVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHF 62
Query: 142 QDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVH 201
DT+ G + + V+ + P+ I + A+G F R G L GG R +
Sbjct: 63 DDTVKGGDFRARESPVKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAY 122
Query: 202 AADMTGREIERALLEAV---VSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQE 258
A TG+++ AL A+ ++ + +E +D++ G+ N+ T E
Sbjct: 123 ARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGN---RARGIIARNLVTGE 179
Query: 259 VVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADE 318
+ + +LA+GG G+++ +TN + + A+ A +N EF+Q HPTA+ +
Sbjct: 180 IETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIPVD 239
Query: 319 GLPIKPKKTRENSFLITEAVRGDGGIL--------------------YNLGMERFMPLYD 358
G K R L++E++R DG I Y L ER P +
Sbjct: 240 G--TWQSKLR----LMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFL--ERRYPAF- 290
Query: 359 ERAELAPRDVVARSIDDQ-----LKKRNEKYVLLDISHKPTEKILSH-----FPNIAAEC 408
L PRD+ +R+I E V LD S E++ + N+
Sbjct: 291 --GNLVPRDIASRAIFQVCDAGKGVGPGENAVYLDFSDA-DERLGRKEIDAKYGNLFEMY 347
Query: 409 LKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNS 467
K+ G D P+ + PA HY GG+ TN+ GL+ AGE + HGANRL +NS
Sbjct: 348 EKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQMTNIPGLFAAGECDFSQ-HGANRLGANS 406
Query: 468 LLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKE----- 522
LL A+ A+ +I + +LS+ + +P+ L +E
Sbjct: 407 LLSAIADGYFALPFTIPN--YLGPELSSED------MPEDA--PEFQAALAEEQERFDRL 456
Query: 523 -----------VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE-WETYLFEHGWEQT 570
+ +EL IM G+ R+ L + +I EL W+ +++
Sbjct: 457 LKMRGDENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKES 516
Query: 571 FVGLE-ACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
LE A + + A+L+ AL R+ES G H+ +FP
Sbjct: 517 NQVLEFARRVADYLELAELMCLDALNRNESCGAHFRPEFP 556
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes [Energy metabolism, TCA cycle]. Length = 603 |
| >gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 9e-56
Identities = 161/558 (28%), Positives = 254/558 (45%), Gaps = 62/558 (11%)
Query: 87 VIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQ 142
V+G G+AGL ++ A+ G V + + S++ AQGG++ + DS H
Sbjct: 8 VVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFD 67
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 202
DT+ G +L + V+ +C P I L +G F+R +G L R GG HHR A
Sbjct: 68 DTVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFA 127
Query: 203 ADMTGREIERALLEAV---VSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEV 259
TG+++ AL E V ++ +E + L + + VC G+ ++ T E+
Sbjct: 128 GATTGQQLLYALDEQVRRYEVAGLVTKYEGW---EFLGAVLDDEGVCRGIVAQDLFTMEI 184
Query: 260 VRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319
F + ++A+GG G I+ +TN + TG + ++ A +N EF+Q HPTA+ +
Sbjct: 185 ESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTAIPGD- 243
Query: 320 LPIKPKKTRENSFLITEAVRGDGGILYNLG-------MERFMPLYDERAELAPRDVVARS 372
K R L++E+ RG+GG ++ +E P Y L PRD+ R
Sbjct: 244 -----DKLR----LMSESARGEGGRVWTYKDGKPWYFLEEKYPAY---GNLVPRDIATRE 291
Query: 373 I-----DDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAA 426
I + +L E V LD+SHK +++ I K+ G D P+ + PA
Sbjct: 292 IFDVCVEQKLGINGENMVYLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAV 351
Query: 427 HYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEA----LVFARRAVQPS 482
HY GG+ TN+ GL+ AGE + HGANRL +NSLL A +V AV+
Sbjct: 352 HYSMGGLWVDYDQMTNIPGLFAAGECDYS-YHGANRLGANSLLSAIYGGMVAGPNAVE-Y 409
Query: 483 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRT-KE----VRKELQSIMWRYVGI 537
I ++ D+S+S + + NIL E + KEL M V +
Sbjct: 410 IKGLGKSADDVSSSVFEQALKQEQEK----FDNILSMDGTENAYVLHKELGEWMTDNVTV 465
Query: 538 VRSTTSLQTAEWRIDELEAEWE------TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVS 591
VR L + +I EL ++ T + + Q ++ N+ A+++
Sbjct: 466 VRENDKLLETDEKIQELMERYKRISVNDTSRWSN---QGASFTR--QLWNMLELARVITI 520
Query: 592 SALARHESRGLHYMVDFP 609
AL R+ESRG HY +FP
Sbjct: 521 GALNRNESRGAHYKPEFP 538
|
Length = 589 |
| >gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-39
Identities = 136/469 (28%), Positives = 197/469 (42%), Gaps = 106/469 (22%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGT--VAVITKAEPHESNTNYAQGGVSAVLCP-------S 134
D V+GSG AGL AL K G V ++ K N+ A GG++A
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIE 60
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
DS E ++DT+ G + D + VR++ E D + L G L + GGH
Sbjct: 61 DSPELFIKDTLKGGRGINDPDLVRILAEESADAVDWLQD-GVGARLD-----DLIQLGGH 114
Query: 195 SHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S R +G EI + L + I + DL+ G V +
Sbjct: 115 SVPRAHRPTGGAASGAEIVQKLYKKAK-KEGIDTRLNSKVEDLIQDDQGT------VVGV 167
Query: 253 NVETQEVVRFI--SKVTLLASGGAG-------HIYPS-----TTNPLVATGDGMAMAHRA 298
V+ + +I +K +LA+GG G P+ +TN ATGDG+ MA +
Sbjct: 168 VVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKKLGSTNQPGATGDGLLMAEKI 227
Query: 299 QAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 358
A + +M+++Q HPTA DEG FLI+EAVRG G IL N ERFM
Sbjct: 228 GAALVDMDYIQAHPTASPDEG-----------GFLISEAVRGYGAILVNKTGERFM---- 272
Query: 359 ERAELAPRDVVARSI------------DDQLKKR---NEKYVLLDISHK--PTEKILSHF 401
ELA RD V+ +I DD + K+ + Y L +++K E++ F
Sbjct: 273 --NELATRDTVSDAILAQPGKSAYLIFDDDVYKKAKKVDNYYRLGVAYKGDSLEELAKQF 330
Query: 402 PNIAAECLKYGL-----------------------DITSQPIPVV---PAAHYMCGGVRA 435
I A LK + D++ P + P H+ GGV+
Sbjct: 331 -GIPAAALKKTVKDYNDYVASGKDTPFGRPMDMPVDLSKSPYYAIKVTPGVHHTMGGVKI 389
Query: 436 GLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
+ E + GL+ AGEV G+HGANRL N++ + +VF R A
Sbjct: 390 NTKAEVLDANGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIA 437
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton [Energy metabolism, Electron transport]. Length = 439 |
| >gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 133/560 (23%), Positives = 210/560 (37%), Gaps = 120/560 (21%)
Query: 123 AQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFD 179
AQGG++A DSV DT+ G + + V + + I + +A G F
Sbjct: 78 AQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFA 137
Query: 180 RGEDGNLHLAREGGHSHHRIVHAADMTGREIERAL---LEAVVSDPNISVFEHHFAIDLL 236
R G L GG R +A TG+++ L ++ + ++ +DL+
Sbjct: 138 REYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLV 197
Query: 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAH 296
D G+ N+ T E+ R + +LA+GG G+++ +TN + + + AH
Sbjct: 198 VV----DGRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAH 253
Query: 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL----------- 345
+ A +N F Q HPT + G + K T L++E++R DG I
Sbjct: 254 KKGAYFANPCFTQIHPTCIPVSG-DYQSKLT-----LMSESLRNDGRIWVPKKKGDKRKP 307
Query: 346 ---------YNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKY--------VLLD 388
Y L ER P + L PRDV +R+ ++ + V LD
Sbjct: 308 NDIPEEERDYYL--ERRYPAF---GNLVPRDVASRAAKERC---DAGRGVGPTGLGVYLD 359
Query: 389 ----ISHKPTEKILSHFPNIAAECLKYG------LDIT-----SQPIPVVPAAHYMCGGV 433
I + I +YG IT P+ + PA HY GG+
Sbjct: 360 FADAIKRLGKDVIRE----------RYGNLFDMYERITGENPYETPMRIYPAVHYTMGGL 409
Query: 434 RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALV-------------FARRAVQ 480
+ + GL+V GE + HGANRL +++L++ L A
Sbjct: 410 WVDYNLMSTIPGLFVIGEANFSD-HGANRLGASALMQGLADGYFVLPYTIGNYLADTIGT 468
Query: 481 PSI--DHKK--------STSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSI 530
P + DH + ID + RTV +EL I
Sbjct: 469 PKVSTDHPEFKEAEAEVQDRIDRLLNIKGKRTV-----------------DSFHRELGKI 511
Query: 531 MWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTF-VGLE-ACEMRNLFCCAKL 588
MW Y G+ R+ L+ A +I L E+ + G LE A + + +L
Sbjct: 512 MWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSADELNQELEKAGRVADFLELGEL 571
Query: 589 VVSSALARHESRGLHYMVDF 608
+ AL R ES G H+ +
Sbjct: 572 MCRDALHREESCGGHFREEH 591
|
Length = 640 |
| >gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 2e-26
Identities = 118/468 (25%), Positives = 178/468 (38%), Gaps = 106/468 (22%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP--------HESNTNYAQGGVSAVLCPS 134
+D ++G+G AG+ A+E G VI + P S N ++ +
Sbjct: 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIA 121
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
DS + ++T+ G D +R I L ++G D L GG
Sbjct: 122 DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDN-------LTITGGM 174
Query: 195 SHHRIVHAAD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S R D G + LL+ V I +F + D+ T + D GV +
Sbjct: 175 SEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVN---ADV-TKITEKDGKVTGV-KV 228
Query: 253 NVETQEVVRFISKVTLLASGGAG-------HIYPS-----TTNPLVATGDGMAMAHRAQA 300
+ +E SK ++ +GG G P TTN +TGDG+ M +
Sbjct: 229 KINGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKLGG 288
Query: 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER 360
+M+ +Q HPT + S+LI EAVRG+G IL N +RF
Sbjct: 289 TTVDMDQIQIHPTV------------QQSKSYLIGEAVRGEGAILVNQKGKRFG------ 330
Query: 361 AELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFP------------------ 402
EL RD V+ +I+ YV+ D K K ++ +
Sbjct: 331 NELDTRDKVSAAINKL--PEKYAYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKI 388
Query: 403 NIAAECLKYGLD-----------------------ITSQP---IPVVPAAHYMCGGVRAG 436
N+ AE L LD +++ P I + P HY GGV+
Sbjct: 389 NVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDLSTGPYYAIKIAPGIHYTMGGVKIN 448
Query: 437 LQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
E + + GLY AGEV GLHG NR+ NS+ + ++F R+A
Sbjct: 449 TNTEVLKKDGSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQA 495
|
Length = 506 |
| >gnl|CDD|217281 pfam02910, Succ_DH_flav_C, Fumarate reductase flavoprotein C-term | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 1e-21
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 524 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHG--WEQTFVGLEACEMR 580
RKELQ IM + G+ R+ L+ A +I EL ++ + + + + EA E+
Sbjct: 1 RKELQEIMQEHAGVFRTEEGLEEALEKIKELRERFKNVRVDDKSKVFNTDLI--EALELG 58
Query: 581 NLFCCAKLVVSSALARHESRGLHYMVDFP 609
NL A+ + +SALAR ESRG HY D+P
Sbjct: 59 NLLELAEAIATSALARKESRGAHYREDYP 87
|
This family contains fumarate reductases, succinate dehydrogenases and L-aspartate oxidases. Length = 127 |
| >gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-18
Identities = 86/330 (26%), Positives = 135/330 (40%), Gaps = 58/330 (17%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCPSDSVESHM---- 141
V+G G+AG A+E A G ++ + E N+ A G++ + + + +
Sbjct: 414 VVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGK 473
Query: 142 ---QDTIVAG-AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH 197
+DT ++G CD V+ + + D I L ++G L++ GG S
Sbjct: 474 FFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTV-------LSQLGGASRK 526
Query: 198 RIVHAADMT-------GREIERALLEAVVSD--PNISVFEHHFAIDLLTTLDG-PDAV-- 245
R A D G I R L + + + +++ LL+ PD V
Sbjct: 527 RCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVRE 586
Query: 246 --CHGVDTLNVETQE--VVRFISKVTLLASGG--------------AGHIYP-STTNPLV 286
GV V+ ++ +LA+GG A + TTN
Sbjct: 587 IRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTTNGPW 646
Query: 287 ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILY 346
ATGDG+ +A + A + +M+ VQ HPT L D P K +L EA+RG GG+L
Sbjct: 647 ATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTK-----YLGPEALRGSGGVLL 701
Query: 347 NLGMERFMPLYDERAELAPRDVVARSIDDQ 376
N ERF+ EL R VV+++I Q
Sbjct: 702 NKNGERFV------NELDLRSVVSQAIIAQ 725
|
Length = 1167 |
| >gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 145/579 (25%), Positives = 223/579 (38%), Gaps = 107/579 (18%)
Query: 84 DFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQG--GVS-AVLCPSDSVES 139
D VIG G AG AL A+HG V ++ KA S A G GV+ AV+ E
Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGA-LAMGMDGVNNAVIPGKAEPED 73
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI 199
++ + A + + TV T G ++ L G F++ E G + R H
Sbjct: 74 YVAEITRANDGIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRR----VHRSG 129
Query: 200 VHAADM-TGREIERALLEAVVSDPN---ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE 255
+ M G+++++AL + I + + +LT +G AV G LN
Sbjct: 130 SYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLT--EGGRAV--GAAALNTR 185
Query: 256 TQEVVRFISKVTLLASG--------GAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307
T E V +K +LA+G +G++Y + NP A GDG +MA+ A A +S +E
Sbjct: 186 TGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNA-GDGYSMAYHAGAELSGIEC 244
Query: 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL-YDERAELAPR 366
Q +P + D P N F GG N ERF+ Y +A
Sbjct: 245 FQINPL-IKDYNGPACAYVA--NPF---------GGYQVNAQGERFVDSDYWSGQMMAE- 291
Query: 367 DVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLK---------YGLDITS 417
V R I+ R Y L +SH P E+ LS +I + G D +
Sbjct: 292 --VKREIESA---RGPIY--LKVSHLP-EETLSALESILHTTERPTRGTFHANRGHDYRT 343
Query: 418 QPIPVVPAAHYMCG-----GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 472
I + + +C GV T V GLY AG++AC + N ++ A
Sbjct: 344 HDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLAC--------VPHNYMIGAF 395
Query: 473 VFARRAVQPSIDHKKSTSIDLS---ASNWWTRTVVPKSLGCNVM---HNILRR------- 519
VF DL+ A+ P L + + H ++ R
Sbjct: 396 VFG----------------DLAGAHAAGTLAEVPAPGELPADQLAEAHELIYRPLRHPDG 439
Query: 520 --TKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEAC 577
+V +L+ + YV ++ L A + + AE + G +
Sbjct: 440 PPQPQVEYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAE----IAGMGARTPHELMRCA 495
Query: 578 EMRNLFCCAKLVVSSALARHESR-GL-HYMVDFPHVEEN 614
E+ + CA++ S+L R ESR GL H D P ++
Sbjct: 496 EVSFIRDCAEMAARSSLTRTESRWGLYHDRADLPERDDA 534
|
Length = 897 |
| >gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 37/251 (14%)
Query: 83 FDFSVIGSGVAGLCYALEVAKH----GTVAVITKAEPHESNTNYAQGGVS--------AV 130
D VIG G AG A++ AK V ++ KA S G +S AV
Sbjct: 10 TDILVIGGGTAGPMAAIK-AKERNPALRVLLLEKANVKRS------GAISMGMDGLNNAV 62
Query: 131 LCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR 190
+ + E + ++ +A + D + V + I++L G F++ E G+ + +
Sbjct: 63 IPGHATPEQYTKEITIANDGIVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK 122
Query: 191 EGGHSHHRIVHAADM-TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
HH + M G +I++ L + + + A LLT DG V G
Sbjct: 123 ----VHHMGSYVLPMPEGHDIKKVLYRQL-KRARVLITNRIMATRLLTDADG--RVA-GA 174
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHI-YPST-------TNPLVATGDGMAMAHRAQAV 301
+ T E + +K +L G AG + P++ NP A GDG AMA+ A A
Sbjct: 175 LGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNA-GDGYAMAYHAGAE 233
Query: 302 ISNMEFVQFHP 312
++N+E Q +P
Sbjct: 234 LANLECFQINP 244
|
Length = 554 |
| >gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 38/97 (39%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 422 VVPAAHYMCGGV----RAGLQGETN----------VRGLYVAGEVACTGLHGANRLASNS 467
V P+ HY GG A +Q E N + GL+ AGEV G+HG NRL NS
Sbjct: 825 VTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVT-GGVHGGNRLGGNS 883
Query: 468 LLEALVFAR----RAVQPSIDHKKSTSIDLSASNWWT 500
LLE +VF + RA +I KK LS W T
Sbjct: 884 LLECVVFGKIAGDRAA--TILQKKKYG--LSKDKWTT 916
|
Length = 1167 |
| >gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 43/217 (19%)
Query: 412 GLDITSQPIPVVPAAHYMCGG-----VRAGLQGETNVRGLYVAGEVACTGLHGANRLASN 466
G D Q + + + C G V + ET V GLY AG++A N
Sbjct: 333 GTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETTVPGLYAAGDMASVPH--------N 384
Query: 467 SLLEALVFARRAVQPSIDHKKSTSI------DLSASNWWTRTVVPKSLGCNVMHNILRRT 520
+L A + A + + ++ + + A R + P L R
Sbjct: 385 YMLGAFTYGWFAGENAAEYVAGRDLPEVDAAQVEAER--ARVLAP-----------LHRE 431
Query: 521 -----KEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLE 575
+V +L+ ++ Y+ + T ++ R E+ + E + + LE
Sbjct: 432 DGLPPAQVEYKLRRLVNDYLQPPKVTRKMEIGLQRFAEIREDLE-RIKARDPHELMRALE 490
Query: 576 ACEMRNLFCCAKLVVSSALARHESR-GL-HYMVDFPH 610
+R+ CA++ ++L R ESR GL HY VDFP
Sbjct: 491 VSSIRD---CAEMAARASLFRTESRWGLYHYRVDFPE 524
|
Length = 554 |
| >gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 266
G + + EA +V F DLL D G +V + F +K
Sbjct: 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVD----DNRIAGAVGFSVRENKFYVFKAKA 186
Query: 267 TLLASGGAGHIY-PSTTN--------PLVATGDGMAMAHRAQAVISNMEF 307
++A+GGA IY P + P TG G AM RA A ++ E
Sbjct: 187 VIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTFEN 236
|
Length = 608 |
| >gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP--------HESNTNYAQGGVSAVLCP 133
D VIG G A LC AL + G +V ++ A H N VL
Sbjct: 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVG 64
Query: 134 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR 190
+ E QD + D+ R++ E D + G F G LH+AR
Sbjct: 65 AYPEEEFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVAR 121
|
Length = 466 |
| >gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 20/107 (18%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTI 145
VIG G+ GL A E+A+ G +V ++ + + + G +
Sbjct: 4 VIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLH----------------- 46
Query: 146 VAGAYLCDDETVRVVCTEGPDRIRELIAI-GASFDRGEDGNLHLARE 191
G + + E D RELI G D G L LAR+
Sbjct: 47 -PGLRKERAPLLARLALESRDLWRELIEELGIDCDFRRTGVLVLARD 92
|
This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234 |
| >gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 41/201 (20%)
Query: 440 ETNVRGLYVAGEVACTGLHGAN--RLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASN 497
T V GL+ AG+V G + + +S S E + A+ AV+ +D+K ++
Sbjct: 392 MTTVEGLFAAGDVV-----GGSPHKFSSGSFAEGRIAAKAAVRYILDNKD-EKPEIDDDQ 445
Query: 498 ------------WWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRS--TTS 543
S +V N + +++ + LQ IM Y G + + TT+
Sbjct: 446 IEELKKEIYAPLERYEEFKDYSTDPDVNPNYIS-PEQLEERLQKIMDEYAGGISTNYTTN 504
Query: 544 ---LQTAEWRIDELEAEWETY----LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596
L+ A ++ LE + E L E + E+++ A+ + L R
Sbjct: 505 EKLLEIALELLEMLEEDSEKLAARDLHEL--------MRCWELKHRLLVAEAHIRHLLFR 556
Query: 597 HESR--GLHYMVDFPHV-EEN 614
E+R G + D+P +EN
Sbjct: 557 KETRWPGYYERADYPGKDDEN 577
|
Length = 608 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 641 | |||
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 100.0 | |
| PLN02815 | 594 | L-aspartate oxidase | 100.0 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 100.0 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 100.0 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 100.0 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 100.0 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 100.0 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 100.0 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 100.0 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 100.0 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 100.0 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 100.0 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 100.0 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 100.0 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 100.0 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 100.0 | |
| TIGR01816 | 565 | sdhA_forward succinate dehydrogenase, flavoprotein | 100.0 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 100.0 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 100.0 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 100.0 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 100.0 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 100.0 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 100.0 | |
| KOG2403 | 642 | consensus Succinate dehydrogenase, flavoprotein su | 100.0 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 100.0 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 100.0 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 100.0 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 100.0 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 100.0 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 100.0 | |
| PRK07121 | 492 | hypothetical protein; Validated | 100.0 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 100.0 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 100.0 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 100.0 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 100.0 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 100.0 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 100.0 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 100.0 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 100.0 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 100.0 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 100.0 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 100.0 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 100.0 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.95 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.93 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 99.92 | |
| PF02910 | 129 | Succ_DH_flav_C: Fumarate reductase flavoprotein C- | 99.91 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 99.9 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 99.79 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.75 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 99.72 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 99.67 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.67 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 99.67 | |
| PLN02546 | 558 | glutathione reductase | 99.67 | |
| PLN02507 | 499 | glutathione reductase | 99.66 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.64 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 99.63 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.63 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.62 | |
| PLN02661 | 357 | Putative thiazole synthesis | 99.62 | |
| PRK06116 | 450 | glutathione reductase; Validated | 99.61 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.59 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 99.58 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.58 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.57 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.57 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.57 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.57 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.57 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.56 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.56 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.54 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.54 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.52 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.52 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.51 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.5 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.5 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.5 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.49 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 99.49 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 99.49 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.48 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 99.48 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 99.47 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.47 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.47 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.46 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.46 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.46 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.45 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 99.45 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.45 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 99.44 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.42 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.41 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 99.39 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.38 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 99.37 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.35 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.35 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.35 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 99.33 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 99.31 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.31 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 99.27 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 99.26 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 99.25 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.23 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.2 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 99.16 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 99.16 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 99.16 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.15 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 99.15 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 99.14 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 99.13 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.12 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.12 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 99.11 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 99.11 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 99.11 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 99.11 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 99.11 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 99.1 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.1 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 99.09 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 99.09 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 99.09 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.08 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.07 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.07 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.06 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.05 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 99.05 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.05 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 99.04 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 99.04 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.04 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.04 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 99.03 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.03 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 99.03 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 99.03 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 99.03 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.02 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.99 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.99 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 98.99 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.98 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.98 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 98.98 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.97 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.96 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.96 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.95 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.95 | |
| PLN02985 | 514 | squalene monooxygenase | 98.94 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 98.93 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.93 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.9 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.9 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.89 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 98.89 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.89 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.89 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.88 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.87 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.86 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.85 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 98.85 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.85 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 98.84 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.84 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.84 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.83 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.82 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.82 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.81 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.8 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 98.8 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.8 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.79 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.78 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.78 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.78 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.78 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.77 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.77 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.76 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.73 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.72 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.72 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 98.71 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 98.71 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.71 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.7 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.7 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 98.69 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.69 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.67 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.67 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.67 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 98.66 | |
| PLN02785 | 587 | Protein HOTHEAD | 98.65 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 98.6 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.6 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 98.6 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 98.59 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.59 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.58 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.58 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.58 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.57 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 98.57 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.56 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 98.53 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.52 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.51 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.5 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 98.49 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 98.47 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.46 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.43 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.42 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.42 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.42 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.41 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 98.4 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.38 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.37 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.35 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 98.32 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.28 | |
| PLN02612 | 567 | phytoene desaturase | 98.26 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.23 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 98.22 | |
| TIGR03377 | 516 | glycerol3P_GlpA glycerol-3-phosphate dehydrogenase | 98.21 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 98.2 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.19 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.17 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 98.16 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.15 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 98.11 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 98.11 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 98.1 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.1 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.06 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 97.97 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.92 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.88 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 97.86 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.85 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.85 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.84 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 97.82 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.77 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 97.74 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.71 | |
| TIGR03197 | 381 | MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri | 97.67 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 97.62 | |
| TIGR02352 | 337 | thiamin_ThiO glycine oxidase ThiO. This family con | 97.62 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 97.61 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.57 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.55 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 97.52 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 97.51 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.51 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.48 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.46 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.43 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 97.43 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.43 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.42 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 97.42 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 97.41 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 97.41 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.39 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.37 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 97.34 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 97.34 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.33 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.33 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.32 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 97.31 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.31 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.28 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.27 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.26 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 97.22 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.19 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 97.16 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.16 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.15 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.14 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.14 | |
| PLN02676 | 487 | polyamine oxidase | 97.11 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 97.1 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.06 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 97.05 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 97.03 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.02 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 96.97 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 96.95 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 96.95 | |
| PLN02568 | 539 | polyamine oxidase | 96.92 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 96.9 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 96.89 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 96.88 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 96.82 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 96.82 | |
| PLN02507 | 499 | glutathione reductase | 96.8 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 96.79 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 96.79 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 96.79 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 96.78 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 96.76 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 96.74 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 96.74 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 96.74 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 96.72 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 96.71 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 96.71 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 96.68 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 96.68 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.68 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 96.67 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 96.63 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 96.59 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 96.57 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 96.56 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 96.55 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 96.55 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 96.47 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 96.43 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 96.42 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 96.42 | |
| PLN02546 | 558 | glutathione reductase | 96.38 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 96.37 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 96.37 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 96.34 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 96.33 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 96.29 | |
| PLN02976 | 1713 | amine oxidase | 96.27 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 96.26 | |
| PLN03000 | 881 | amine oxidase | 96.25 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 96.08 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 96.07 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 95.93 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 95.9 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 95.83 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 95.65 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 95.6 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.29 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 95.25 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 95.01 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 94.86 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 94.86 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 94.79 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 94.41 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 94.04 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 93.96 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 93.92 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 93.86 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 93.79 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 93.62 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 93.41 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 93.27 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 92.61 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 92.07 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 91.55 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.57 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.4 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 89.31 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 89.09 | |
| KOG4405 | 547 | consensus GDP dissociation inhibitor [Signal trans | 89.08 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 89.06 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 88.75 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 88.69 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 88.55 | |
| COG5044 | 434 | MRS6 RAB proteins geranylgeranyltransferase compon | 88.2 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 88.15 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 88.06 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 87.72 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 87.47 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 87.44 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 87.44 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 86.28 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 86.2 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 85.9 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 85.78 | |
| KOG1439 | 440 | consensus RAB proteins geranylgeranyltransferase c | 85.51 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 85.43 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 85.34 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 85.33 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 85.07 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 84.84 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 84.84 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.5 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 84.48 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 84.25 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 83.39 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 83.28 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 83.28 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 83.22 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 83.1 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 83.07 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 83.01 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 82.96 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 82.83 | |
| PRK08223 | 287 | hypothetical protein; Validated | 82.47 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 82.25 | |
| KOG3923 | 342 | consensus D-aspartate oxidase [Amino acid transpor | 82.04 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 81.88 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 81.75 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 81.09 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 81.01 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 80.86 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 80.59 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 80.57 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 80.49 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 80.29 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 80.22 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 80.05 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 80.02 |
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-109 Score=845.36 Aligned_cols=505 Identities=48% Similarity=0.721 Sum_probs=451.2
Q ss_pred cEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTE 163 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~ 163 (641)
||+|||+|+|||++|+.|++.-+|+||.|+....++|.|+||||.+...++|+++.|+.|++.+|.++||++.++.++.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~~ 88 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVSE 88 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHh
Confidence 99999999999999999998779999999999889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006532 164 GPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 243 (641)
Q Consensus 164 ~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 243 (641)
++.+++||.++|++|+++.+|.+.+..+|+|+.+|++|..+.+|+.++..|.++++++++|++++++.+.+|+++++.
T Consensus 89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-- 166 (518)
T COG0029 89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-- 166 (518)
T ss_pred HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc--
Confidence 999999999999999999999999999999999999999999999999999999998899999999999999998542
Q ss_pred ceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCC
Q 006532 244 AVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 323 (641)
Q Consensus 244 ~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~ 323 (641)
.+.|+.+.+..+ +...|+|+.|||||||.+++|..++||..++|||++||+++|+.+.||||+|||||.+..++.
T Consensus 167 -~~~Gv~~~~~~~-~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l~~~~~--- 241 (518)
T COG0029 167 -GVAGVLVLNRNG-ELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTALYIPQR--- 241 (518)
T ss_pred -eEeEEEEecCCC-eEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeeccceecCCCC---
Confidence 455999986433 678999999999999999999999999999999999999999999999999999999876532
Q ss_pred CCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHhhChh
Q 006532 324 PKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPN 403 (641)
Q Consensus 324 p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~~~ 403 (641)
..+|++|++||+|++|+|.+|+|||..|+|.+||+|||+|+++|+.||++++.. ||||+++.+.+.+.++||+
T Consensus 242 ------~~~LiSEAVRGEGA~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~-V~LD~s~~~~~~~~~rFP~ 314 (518)
T COG0029 242 ------RAFLISEAVRGEGAILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD-VFLDISHIPGDFFERRFPT 314 (518)
T ss_pred ------ccceeehhhhcCccEEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCe-EEEeccCCCchhhhhhCcH
Confidence 268999999999999999999999999999999999999999999999997644 9999999998889999999
Q ss_pred HHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHH
Q 006532 404 IAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSI 483 (641)
Q Consensus 404 ~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa 483 (641)
+++.|.+.|+||.++||||.|++||+||||.||.++||+||||||+|||+|+|+||||||+||||.||+|||++|++.++
T Consensus 315 I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~ 394 (518)
T COG0029 315 IYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIA 394 (518)
T ss_pred HHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 006532 484 DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 563 (641)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~ 563 (641)
...............+. .. .+ ......-+++||++||+|+||+|+.++|++++.+|+.++++....
T Consensus 395 ~~~~~~~~~~~~~~~~~-~~----------~~-~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~~~~~~l~~~~~~~~~~-- 460 (518)
T COG0029 395 GRLAPAPREAPTLPVRD-DY----------EE-NVLLAHDRHELRRLMWRYVGIVRTAKGLERAIRRLEPLQQENDEY-- 460 (518)
T ss_pred cccccCccCCCCCCccc-cc----------cc-ccccccCHHHHHHHHHhhcceEechHHHHHHHHHHHhhhhhhhhc--
Confidence 76432221000000000 00 00 011122357899999999999999999999999999998775542
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecCCC
Q 006532 564 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILPSL 625 (641)
Q Consensus 564 ~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~ 625 (641)
.+.+.. -+|++++|++|+.|||+|+||||+|||.|||.+.+++...+++.++.
T Consensus 461 -----~~~~~~----~~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~~~~~~~~~~~~~~~ 513 (518)
T COG0029 461 -----ANFRVS----NRNLALVALLIARAALLRTESRGAHFRLDYPDTLPEAQRRILVTLND 513 (518)
T ss_pred -----cccccc----ccCHHHHHHHHHHHHHhccccccceecccCCCcCccccCceEEeccc
Confidence 011111 28999999999999999999999999999999999988888776543
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-100 Score=841.32 Aligned_cols=560 Identities=81% Similarity=1.236 Sum_probs=480.0
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
..+.++||||||+|.|||+||+.|++.|+|+||||....+|+|.+++||+++...+.|+++.|++|+++.+.++++++++
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv 104 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETV 104 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhCCCEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHH
Confidence 44567999999999999999999999999999999999899999999999988888999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
+.+++++++.++||+++|++|++..+|.+....+++|+++|+++..+.+|..++..|.+.+++..||+|++++.+++|++
T Consensus 105 ~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~ 184 (594)
T PLN02815 105 RVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLT 184 (594)
T ss_pred HHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeee
Confidence 99999999999999999999998888888888899999999999888899999999999987756999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 317 (641)
+++|...+|+|+++.+..+|+.+.|.||+|||||||++++|+.+++++.+||||+.||+++||.+.||||+||||+.+..
T Consensus 185 ~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefvQfhPt~~~~ 264 (594)
T PLN02815 185 SQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQFHPTALAD 264 (594)
T ss_pred ecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCceeEEeeeeecC
Confidence 64431113999999887788888999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHH
Q 006532 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKI 397 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~ 397 (641)
.+.+..|.......+++++.++++|++++|.+|+|||++|++..++.|||+++++|..++.+++..++|+|.++.+.+.+
T Consensus 265 ~~~~~~~~~~~~~~~l~~ea~rg~G~ilvN~~GeRF~~~y~~~~ela~rd~va~ai~~e~~~~~~~~v~lD~~~~~~~~~ 344 (594)
T PLN02815 265 EGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREEI 344 (594)
T ss_pred CCccccccccccccceeehhhccCCcEEECCCCCCCccccCcccccCChHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHH
Confidence 44322232222235788999999999999999999999999988999999999999999977655689999999998888
Q ss_pred HhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHH
Q 006532 398 LSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR 477 (641)
Q Consensus 398 ~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~ 477 (641)
.+++|++.+.+.+.|+|+.++|++|.|.+||+||||.||.++||+|||||||||++|+|+||+|||+||||++|+|||++
T Consensus 345 ~~~~p~i~~~~~~~GiD~~k~pi~v~P~~hyt~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~ 424 (594)
T PLN02815 345 LSHFPNIAAECLKRGLDITKQPIPVVPAAHYMCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARR 424 (594)
T ss_pred HHHCHHHHHHHHHhCcCCCCCceeeechhcEeCCCeeECCCCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHH
Q 006532 478 AVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE 557 (641)
Q Consensus 478 Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~ 557 (641)
||+.+++++.....+............+..............+.+++.+||++||+|+||+|++++|+++|++|++|+++
T Consensus 425 Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~ 504 (594)
T PLN02815 425 AVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWNYVGIVRSTERLETAERKLEELEAE 504 (594)
T ss_pred HHHHHHHHhhcccccccccccccccccccchhhhhhhhhccchHHHHHHHHHHHHhcCCEEEcHHHHHHHHHHHHHHHHH
Confidence 99999887643211110000000000000000000001111356788999999999999999999999999999999988
Q ss_pred HHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecC-CCccccccccccc
Q 006532 558 WETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP-SLVNCTWSSRQLH 636 (641)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~-~~~~~~~~~~~~~ 636 (641)
+........++.+.++++++|++||+++|+++++|||+|+||||+|||+|||++|++|.+++++++ -+---+|+++.||
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~el~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (594)
T PLN02815 505 WEAILFRHGWKPTMVGLEACEMRNLFCVAKLVVSSALARKESRGLHYTTDYPELVESERKPTVIFPSVPTAGTWSSRSLH 584 (594)
T ss_pred HHHhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHhCCCCcceeecCCCCccChhHhcCEEEeeccCcccccCccccc
Confidence 776443334444557789999999999999999999999999999999999999999777777765 4445799999999
Q ss_pred c
Q 006532 637 K 637 (641)
Q Consensus 637 ~ 637 (641)
.
T Consensus 585 ~ 585 (594)
T PLN02815 585 R 585 (594)
T ss_pred c
Confidence 6
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-94 Score=792.51 Aligned_cols=529 Identities=40% Similarity=0.630 Sum_probs=449.8
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
..+.++||||||+|.|||+||+.|++ | +|+||||....+|+|.+++||+++...+.|+++.|+.|+++.+.+++|+++
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~l 83 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEA 83 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 45668999999999999999999975 8 999999999988999999999998888899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
++.+++++++.++||+++|++|++. ++.+....+++|+.+|.++..+.+|..++..|.+.+.++.||+|++++.+++|+
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~-~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li 162 (553)
T PRK07395 84 VRFLVEQAPEAIASLVEMGVAFDRH-GQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLW 162 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeecC-CCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhe
Confidence 9999999999999999999999875 455556677899999999988889999999999988765699999999999999
Q ss_pred ecC-CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceee
Q 006532 237 TTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315 (641)
Q Consensus 237 ~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~ 315 (641)
+++ +| +|+||++.+ +|+...|+||.|||||||++++|..+++++.++|||+.||+++||.+.+|||+||||+.+
T Consensus 163 ~~~~~g---~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~~q~hpt~~ 237 (553)
T PRK07395 163 LEPETG---RCQGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTAL 237 (553)
T ss_pred ecCCCC---EEEEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcceeEEeeee
Confidence 864 36 899998864 677778999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC----CeEEEeCCC
Q 006532 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE----KYVLLDISH 391 (641)
Q Consensus 316 ~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~----~~v~lD~~~ 391 (641)
..++. ..+++++.++++|+++||.+|+|||.+|+|..|+.+||+++++|++++.+++. ..||+|+++
T Consensus 238 ~~~~~---------~~~l~~e~~rg~g~ilvn~~G~RF~~~y~~~~El~~rd~v~~ai~~e~~~~~~~~~~~~v~ld~~~ 308 (553)
T PRK07395 238 TKPGA---------PRFLISEAVRGEGAHLVDAQGRRFAFDYHPAGELAPRDVVSRAIFSHLQKTATDPATAHVWLDLRP 308 (553)
T ss_pred cCCCC---------CceeeehhccCCcEEEECCCCCCCccccCcccccccHHHHHHHHHHHHHhcCCCCCCceEEEeccc
Confidence 54321 14678899999999999999999999999989999999999999999977542 379999999
Q ss_pred CChhHHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHH
Q 006532 392 KPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEA 471 (641)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a 471 (641)
.+.+.+.++||++.+++.+.|+|+.++|++|.|.+||+||||+||.++||+||||||||||+|+|+||+|||+||||+++
T Consensus 309 ~~~~~~~~~~p~i~~~~~~~giD~~~~~i~v~P~~h~~~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~ 388 (553)
T PRK07395 309 IPAERIRRRFPNIIRVCQKWGIDVFQEPIPVAPAAHYWMGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLASNSLLEC 388 (553)
T ss_pred cchHHHHHhhHHHHHHHHHcCCCcCCCEeEEecceeecCCCeeECCCCcccCCCEEECccccccCCCcccchHHHHHHHH
Confidence 99888899999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 006532 472 LVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551 (641)
Q Consensus 472 ~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l 551 (641)
+|||++||+.+++.......... ..... +. ..........+.+++++||++||+++||+|++++|++++++|
T Consensus 389 lvfG~~a~~~~~~~~~~~~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l 460 (553)
T PRK07395 389 LVFAAQLAQLELPIEPPASPDLP-PISFI----ID---ASQWKNEQEQIQRIRQELPELVWQSAGICREADTLERAIAQV 460 (553)
T ss_pred HHHHHHHHHHHHhhcccCCCccc-chhhH----HH---HhhhhccCCCHHHHHHHHHHHHHhcccEEEcHHHHHHHHHHH
Confidence 99999999988754211100000 00000 00 000001112367888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCccc--------------ccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCC
Q 006532 552 DELEAEWETYLFEHGWEQ--------------TFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRL 617 (641)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~ 617 (641)
++|++++.++........ +.++.+++|++||+++|+++++|||.|+||||+|||+|||++|++|.+
T Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~~al~R~ESRG~H~R~D~p~~~~~~~~ 540 (553)
T PRK07395 461 EQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRLDYPQTDPAWQV 540 (553)
T ss_pred HHHHHHHhhccccccccccccccccccccccchhhHHHHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccChhhhc
Confidence 999887765322110000 012566789999999999999999999999999999999999886555
Q ss_pred CeeecCCCccccccccc
Q 006532 618 PTIILPSLVNCTWSSRQ 634 (641)
Q Consensus 618 ~~~~~~~~~~~~~~~~~ 634 (641)
+++++ +++|...|
T Consensus 541 ~~~~~----~~~~~~~~ 553 (553)
T PRK07395 541 HTLVQ----GERWWQSP 553 (553)
T ss_pred eEEEE----cCEEecCC
Confidence 55444 66776544
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-94 Score=796.10 Aligned_cols=521 Identities=33% Similarity=0.496 Sum_probs=455.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+++..++.|+++.|+.|+++.+.+++|++++
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 468999999999999999999987 6 9999999999899999999999888888999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
+.+++++++.++||+++|++|+++++|.+....+++|+++|+++..+.+|..++..|.+.+.+..+|++++++.+++|++
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 161 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV 161 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence 99999999999999999999999989988888889999999999988899999999999887656899999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 317 (641)
+ ++ +|+||++.+..+|+...|+|+.|||||||++++|+.++++..+||||+.||+++||.+.||||+||||+.+..
T Consensus 162 ~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~hPt~~~~ 237 (580)
T TIGR01176 162 D-DG---RVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPG 237 (580)
T ss_pred e-CC---EEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcceEEEccccCC
Confidence 6 56 8999999887788888999999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccc---------cc---cccCchhHHHHHHHHHHHhcC----
Q 006532 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------ER---AELAPRDVVARSIDDQLKKRN---- 381 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~---------~~---~~~~~r~~~~~~i~~~~~~~~---- 381 (641)
. .+++++.++++|++++|.+|+|||++|+ |. .++.|||+++++|+.++.+++
T Consensus 238 ~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~~ 305 (580)
T TIGR01176 238 T------------GILMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTIDT 305 (580)
T ss_pred C------------ceEEeecccCCceEEECCCCCCcccccccccccccccccchhhhcchhHHHHHHHHHHHHhcCCCCC
Confidence 1 4678899999999999999999999985 32 588999999999999998764
Q ss_pred --CCeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCC
Q 006532 382 --EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLH 458 (641)
Q Consensus 382 --~~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~ 458 (641)
+..||+|+++.+.+.+.+++|.+.+++.+ .|+|+.+++|+|.|.+||++|||+||.+++|+|||||||||++|+|+|
T Consensus 306 ~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~gid~~~~~i~v~p~~h~~~GGi~~d~~~~t~i~GLyAaGe~a~~G~h 385 (580)
T TIGR01176 306 PYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDINCETRIKGLFAVGECASVGLH 385 (580)
T ss_pred CCCCEEEEEcCCCCHHHHHHHhhHHHHHHHHHcCCCCCCCeEEEehHHhccCCCeeECcCcccccCCeEeeecccccCcC
Confidence 24599999999988899999999999988 599999999999999999999999999999999999999999888999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchh-----hhhchHHHHHHHHHHHHh
Q 006532 459 GANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWR 533 (641)
Q Consensus 459 Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~ 533 (641)
|+|||+||||++|+|||++||++|++|+.......... .... ... ...++.. ....+.+++++||++||+
T Consensus 386 Ganrl~g~sl~~~~v~G~~ag~~aa~~~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 460 (580)
T TIGR01176 386 GANRLGSNSLAELVVFGRRAGEAAAERAARHQKSNESA--IRAQ-ART--VELRLERLLSQHGGENWADIRAEMGATMES 460 (580)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHhhccccccCccc--hhhh-HHH--HHHHHHHHhhccCcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999874421100000 0000 000 0000000 112467889999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCC--CC
Q 006532 534 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF--PH 610 (641)
Q Consensus 534 ~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~--P~ 610 (641)
|+||+|++++|+++|.+|++|++++..+.... ....++++++++|++|||++|+++++|||+|+||||+|||.|| |+
T Consensus 461 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P~ 540 (580)
T TIGR01176 461 GCGIYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDEGCTE 540 (580)
T ss_pred cccEEECHHHHHHHHHHHHHHHHHHHHhccCccccccchhHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 99999999999999999999998887653222 2223578899999999999999999999999999999999999 99
Q ss_pred CccCCCCCeeec
Q 006532 611 VEENKRLPTIIL 622 (641)
Q Consensus 611 ~d~~~~~~~~~~ 622 (641)
++|++|.++++.
T Consensus 541 ~~d~~~~~~~~~ 552 (580)
T TIGR01176 541 RDDVHFLKHTLA 552 (580)
T ss_pred cCchhhcceEEE
Confidence 988777777653
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-93 Score=798.15 Aligned_cols=537 Identities=35% Similarity=0.518 Sum_probs=456.3
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
.+.++||||||||+|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|++|+++.+.+++|++
T Consensus 47 ~~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~ 126 (635)
T PLN00128 47 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 126 (635)
T ss_pred eeeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHH
Confidence 345799999999999999999999999 999999999889999999999987765 57899999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEE
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
+++.+++++++.++||+++|++|+++.+|.+....+++|+ .+|+++..+.+|..++..|.+.+.+ .||+|+
T Consensus 127 lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~ 205 (635)
T PLN00128 127 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMK-HNTQFF 205 (635)
T ss_pred HHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHh-CCCEEE
Confidence 9999999999999999999999999888887777778876 4588888888999999999999887 599999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccc
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+++.+++|+.++++ +|.||++.+..+|+...|.||+|||||||++++|..++++..+||||++||+++||.+.||||
T Consensus 206 ~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~mef 282 (635)
T PLN00128 206 VEYFALDLIMDSDG---ACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEF 282 (635)
T ss_pred EeeEEEEEEEcCCC---EEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCcc
Confidence 99999999986456 899999988778988899999999999999999999999999999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC----
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---- 382 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~---- 382 (641)
+||||+.+... .+++++.++++|++++|.+|+|||++|++. .++.+||+++++|..++.++++
T Consensus 283 vqfhPt~~~~~------------~~l~~ea~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~ 350 (635)
T PLN00128 283 VQFHPTGIYGA------------GCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPE 350 (635)
T ss_pred eEEecccccCC------------CeEEeeeccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCC
Confidence 99999877531 467888999999999999999999999876 5899999999999999876532
Q ss_pred -CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC----------cccCCeeecc
Q 006532 383 -KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAG 450 (641)
Q Consensus 383 -~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~----------T~ipGLyAaG 450 (641)
..+|+|+++++.+.+.+++|.+.+.+.. .|+|+.++|++|.|.+||+||||.||.++| |+||||||||
T Consensus 351 ~~~v~ld~~~l~~e~l~~~~~~~~~~~~~~~G~D~~~~pi~v~P~~hyt~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaG 430 (635)
T PLN00128 351 KDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAG 430 (635)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceEeeccceEecCCcccCCCCeEecccCcccCCccCceEeee
Confidence 3599999999999999999999888876 699999999999999999999999999888 5899999999
Q ss_pred cccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCcccc-ccch--hhhhchHHHHHHH
Q 006532 451 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGC-NVMH--NILRRTKEVRKEL 527 (641)
Q Consensus 451 e~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l 527 (641)
||+|+|+||+|||+||+|++|+|||++||++|+++++..... .... ... .+..... ..+. .....+.+++++|
T Consensus 431 E~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~~~~~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L 506 (635)
T PLN00128 431 EAACASVHGANRLGANSLLDIVVFGRACANRVAEIAKPGEKQ-KPLP--KDA-GEKTIAWLDKLRNANGSLPTSKIRLNM 506 (635)
T ss_pred ccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhcccccc-cccc--hhh-HHHHHHHHHHhhcccCCCChHHHHHHH
Confidence 999889999999999999999999999999999876432100 0000 000 0000000 0000 0113477889999
Q ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccccccc
Q 006532 528 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMV 606 (641)
Q Consensus 528 ~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~ 606 (641)
|++||+++||+|++++|++++++|++|++++..+...+ ....++++++++|++||+++|+++++|||+|+||||+|||+
T Consensus 507 q~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~~~~aal~R~ESRG~H~R~ 586 (635)
T PLN00128 507 QRVMQNNAAVFRTQETLEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHARE 586 (635)
T ss_pred HHHHhCceeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccC
Confidence 99999999999999999999999999998876542211 11235678899999999999999999999999999999999
Q ss_pred CCCCCccCCCCCeeec-CCCcccccccccc
Q 006532 607 DFPHVEENKRLPTIIL-PSLVNCTWSSRQL 635 (641)
Q Consensus 607 D~P~~d~~~~~~~~~~-~~~~~~~~~~~~~ 635 (641)
|||++||++|+++++. .++.+....+.|+
T Consensus 587 D~P~~~d~~w~~~~~~~~~~~~~~~~~~~~ 616 (635)
T PLN00128 587 DFTKRDDENWMKHTLGYWEEGKVRLDYRPV 616 (635)
T ss_pred CCCCCCccccccEEEEEecCCcceEEeccc
Confidence 9999998888887753 2333333333443
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-93 Score=792.33 Aligned_cols=523 Identities=35% Similarity=0.557 Sum_probs=452.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc----CCCCCHHHHHHHHHHhccCCCCH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL----CPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~----~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
..++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++.. ++.|+++.|+.|+++.+.+++++
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 35799999999999999999999999 99999999888899999999998644 36799999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
++++.+++++++.++||+++|++|+++++|.+....+++|+++|.++..+.+|..++..|.+.+.+ .||++++++.+++
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~~~~ 161 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSG-LNVDFYNEWFSLD 161 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHh-CCCEEEeCcEEEE
Confidence 999999999999999999999999998888877778899999999988888999999999998887 4999999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccccccccee
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~ 314 (641)
|+++ +| +|+||++.+..+|+...|+||+|||||||++.+|+.+++++.+||||+.||+++||.+.+|||+||||+.
T Consensus 162 Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~pt~ 237 (566)
T PRK06452 162 LVTD-NK---KVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTA 237 (566)
T ss_pred EEEE-CC---EEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcceEEeeeE
Confidence 9986 66 8999999887778888999999999999999999999999999999999999999999999999999987
Q ss_pred ecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC---CeEEEeCC
Q 006532 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---KYVLLDIS 390 (641)
Q Consensus 315 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~---~~v~lD~~ 390 (641)
+... .+++++.++++|+++||.+|+|||++|+|. .++.+||++++++..++.++++ .++|+|.+
T Consensus 238 ~~~~------------~~l~~e~~rg~g~ilvN~~G~RF~~e~~~~~~~l~~rd~v~~ai~~e~~~g~g~~~~~v~lD~~ 305 (566)
T PRK06452 238 LYPS------------DVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGFPGGYVGLDLT 305 (566)
T ss_pred ECCC------------CeEEEEeeecCCCEEECCCCCCCccccCccccccCCccHHHHHHHHHHHhCCCCCCCeEEEEcc
Confidence 6421 357788899999999999999999999876 6899999999999999987543 47999999
Q ss_pred CCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcc-cCCeeecccccCCCCCCCCccchhhh
Q 006532 391 HKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETN-VRGLYVAGEVACTGLHGANRLASNSL 468 (641)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~-ipGLyAaGe~a~~g~~Ga~rl~g~sl 468 (641)
+.+.+.+.++||.+.+.+.+ .|+|+.+++|+|.|.+||+||||+||.+++|+ ||||||||||+|+|+||+|||+||||
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl 385 (566)
T PRK06452 306 HLGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSL 385 (566)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecccCEecCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHH
Confidence 99888888899998888888 69999999999999999999999999999996 99999999999779999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccc-c-ccch-hhhhchHHHHHHHHHHHHhcCccccCHHHHH
Q 006532 469 LEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG-C-NVMH-NILRRTKEVRKELQSIMWRYVGIVRSTTSLQ 545 (641)
Q Consensus 469 ~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~ 545 (641)
++|+|||++||++|+++++.... ..... .... .+.... . .... .....+.+++++||++||+|+||+|++++|+
T Consensus 386 ~~~~v~G~~Ag~~aa~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~ 462 (566)
T PRK06452 386 LDTLVFGQVTGRTVVQFLKSNPG-NPTSN-YEKE-AEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLL 462 (566)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CCccc-hhhh-HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhhccccHHHHH
Confidence 99999999999999998753211 00000 0000 000000 0 0000 0112467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 546 TAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 546 ~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
+||++|++|++++.++...+ ....++++++++|++||+++|+++++|||+|+||||+|||.|||++||++|++++++
T Consensus 463 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 540 (566)
T PRK06452 463 NAMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRTDYPDRDDNNWLKHTIA 540 (566)
T ss_pred HHHHHHHHHHHHHHhhccCCcccccChhhHHHHHHHhHHHHHHHHHHHHHhCCCCcceeccCCCCCCCchhhccEEEE
Confidence 99999999998877653221 112356788999999999999999999999999999999999999998878877763
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-93 Score=796.74 Aligned_cols=521 Identities=32% Similarity=0.480 Sum_probs=450.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC-----CCCCHHHHHHHHHHhccCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-----PSDSVESHMQDTIVAGAYLCD 153 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~-----~~d~~~~~~~d~~~~g~~~~~ 153 (641)
+.++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+.+..+ ..|+++.|+.|+++.+.+.||
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D 82 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD 82 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence 46799999999999999999999999 999999999988889999999876643 578999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCccccCCCCC---------------------cccccCCCccccceeeccCCcHHHHHH
Q 006532 154 DETVRVVCTEGPDRIRELIAIGASFDRGEDGN---------------------LHLAREGGHSHHRIVHAADMTGREIER 212 (641)
Q Consensus 154 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~---------------------~~~~~~gg~~~~r~~~~~~~~g~~~~~ 212 (641)
++.++.+++++++.++||+++|++|.+..+|. +....+++++.+|+++..+.+|..+..
T Consensus 83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~ 162 (657)
T PRK08626 83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY 162 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence 99999999999999999999999998765442 223456888999999988889999999
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchh
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 292 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~ 292 (641)
.|.+.+.+ .||+|++++.+++|+.+ +| +|.|+++.+..+|+.+.|.||+|||||||++++|..++++..+||||+
T Consensus 163 ~L~~~~~~-~gv~i~~~~~~~~Li~~-~g---~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~ 237 (657)
T PRK08626 163 AVDNEAIK-LGVPVHDRKEAIALIHD-GK---RCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGA 237 (657)
T ss_pred HHHHHHHh-CCCEEEeeEEEEEEEEE-CC---EEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHH
Confidence 99988887 59999999999999986 56 899999988778988899999999999999999999999999999999
Q ss_pred HHHHhcCC-eeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHH
Q 006532 293 AMAHRAQA-VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVA 370 (641)
Q Consensus 293 ~~a~~aGa-~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~ 370 (641)
+||+++|+ .+.||||+||||+.+... .+++++.++++|++++|.+|+|||++|+|. .|+++||+++
T Consensus 238 ~mA~~aGaa~l~~mE~vqfhPt~~~~~------------g~l~~e~~rg~G~ilvn~~G~RF~~~y~p~~~Ela~rd~vs 305 (657)
T PRK08626 238 AIALETGVAPLGNMEAVQFHPTAIVPS------------GILVTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVS 305 (657)
T ss_pred HHHHHcCCccccCccceEEeccEECCC------------CeEEEeeccCCCEEEECCCCCCCCcccCcccccccchhHHH
Confidence 99999996 799999999999887532 467889999999999999999999999874 5899999999
Q ss_pred HHHHHHHHhcCC------CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCc-c
Q 006532 371 RSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET-N 442 (641)
Q Consensus 371 ~~i~~~~~~~~~------~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T-~ 442 (641)
++|.+++.++++ ..||+|+++.+.+.+.+++|++.+++.. .|+||.+++++|.|..||+||||+||.+++| +
T Consensus 306 rai~~~~~~g~g~~~~~~~~v~lD~~~~~~~~i~~~~~~i~e~~~~~~giD~~~~~i~v~P~~hytmGGi~vd~~~~t~~ 385 (657)
T PRK08626 306 RRMTEHIRKGKGVKSPYGPHLWLDIRILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGESYG 385 (657)
T ss_pred HHHHHHHHhcCCCCCCCCCEEEEECCCCCHHHHHHHHhHHHHHHHHHcCCCCcCceEEEEecccEecCCceECCCCCCcc
Confidence 999999987532 3599999999888888899999999987 6999999999999999999999999999999 6
Q ss_pred cCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccch-----hhh
Q 006532 443 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NIL 517 (641)
Q Consensus 443 ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 517 (641)
||||||||||+|+|+||+|||+||||++|+|||++||++|++|++....+..... .. ..... ....+. +..
T Consensus 386 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~ 461 (657)
T PRK08626 386 LKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGNELEIDTAL-VE-KFVKK--QQDRIDELIAGEGK 461 (657)
T ss_pred cCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhccCCccccch-hh-hHHHH--HHHHHHHHhhcCCC
Confidence 9999999999988999999999999999999999999999998754321100000 00 00000 000000 011
Q ss_pred hchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 006532 518 RRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596 (641)
Q Consensus 518 ~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R 596 (641)
.++.+++++||++||+++||+|++++|++|+++|++|++++.++.... ....++++++++|++|||++|+++++|||+|
T Consensus 462 ~~~~~i~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~~~~a~e~~~~l~~a~~i~~aAl~R 541 (657)
T PRK08626 462 ENVFEIKNEMQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPRMLKLALCVAYGALAR 541 (657)
T ss_pred CCHHHHHHHHHHHHhcccCEEecHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 356789999999999999999999999999999999998887653221 1224678899999999999999999999999
Q ss_pred ccCcccccccCCCCCccCCCCCeee
Q 006532 597 HESRGLHYMVDFPHVEENKRLPTII 621 (641)
Q Consensus 597 ~ESRG~h~R~D~P~~d~~~~~~~~~ 621 (641)
+||||+|||+|||++||++|+++++
T Consensus 542 ~ESRG~H~R~DyP~~~d~~~~~~~~ 566 (657)
T PRK08626 542 TESRGAHAREDYPKRNDRDWLNRTL 566 (657)
T ss_pred CCCccceecCcCcccCchhhceEEE
Confidence 9999999999999999988888775
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-92 Score=786.21 Aligned_cols=523 Identities=35% Similarity=0.525 Sum_probs=448.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++..+ +.|+++.|++|+++.+.++++++++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 4689999999999999999999999 999999998888999999999987654 6799999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc-------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS-------HHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~-------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
+.+++++++.++||+++|++|++.++|.+....+++|+ .+|+++..+.+|..++..|.+++.+ .||++++++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLK-NHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhh-cCCEEEeCc
Confidence 99999999999999999999999888877766677775 4789998888999999999998876 599999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccc
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQF 310 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~ 310 (641)
.+++|+++++| +|+||++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||
T Consensus 165 ~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~ 241 (588)
T PRK08958 165 YALDLVKNQDG---AVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQF 241 (588)
T ss_pred EEEEEEECCCC---EEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcceEe
Confidence 99999986566 899999988778988899999999999999999998999999999999999999999999999999
Q ss_pred cceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC------C
Q 006532 311 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE------K 383 (641)
Q Consensus 311 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~------~ 383 (641)
||+.+... .+++++.++++|+++||.+|+|||++|+|. .++.+||++++++..++.++.+ .
T Consensus 242 ~Pt~~~~~------------~~l~~e~~rg~g~ilvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~ 309 (588)
T PRK08958 242 HPTGIAGA------------GVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGP 309 (588)
T ss_pred ecCcccCC------------ceEEeeccccCceEEECCCCCChhhhhCccccccCChhHHHHHHHHHHHhcCCCcCCCCC
Confidence 99876421 467788899999999999999999999886 5899999999999999876532 2
Q ss_pred eEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC----------cccCCeeecccc
Q 006532 384 YVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGEV 452 (641)
Q Consensus 384 ~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~----------T~ipGLyAaGe~ 452 (641)
.+|+|+++++.+.+.+++|.+.+.++. .++|+.++|++|.|.+||++|||.||.+++ |+|||||||||+
T Consensus 310 ~v~ld~~~l~~~~l~~~~~~~~~~~~~~~~~d~~~~~i~v~p~~h~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~ 389 (588)
T PRK08958 310 HAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEI 389 (588)
T ss_pred eEEEEcccCCHHHHHHHcccHHHHHHHhcCCCcCCCcceeehhhcEeCCCeeECCCceeeccccccCCCccCCeEecccc
Confidence 489999999988888999999888877 489999999999999999999999999988 579999999999
Q ss_pred cCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCCccccccchhhhhchHHHHHHHHHH
Q 006532 453 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSI 530 (641)
Q Consensus 453 a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 530 (641)
+|+|+||+||++||||++|+|||++||++|+++++.... ++... ........ ............+.+++++||++
T Consensus 390 a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 466 (588)
T PRK08958 390 ACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLAEQGALRDASES-DIEASLAR--LNRWNNNRNGEDPVQIRKALQEC 466 (588)
T ss_pred cccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhccCCcccCCHH-HHHHHHHH--HhhhcccCCCCCHHHHHHHHHHH
Confidence 977999999999999999999999999999998743210 01000 00000000 00000000113467789999999
Q ss_pred HHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCC
Q 006532 531 MWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609 (641)
Q Consensus 531 m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P 609 (641)
||+|+||+|++++|++||++|++|++++.++...+. ...+.++++++|++|||++|+++++|||+|+||||+|||+|||
T Consensus 467 m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~aal~R~ESRG~H~R~D~P 546 (588)
T PRK08958 467 MQNNFSVFREGDAMAKGLEELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDFP 546 (588)
T ss_pred HhCCEEEEECHHHHHHHHHHHHHHHHHHHhcccCccccccchhhHHHHHHHhHHHHHHHHHHHHHhCCCCcccccCCCCC
Confidence 999999999999999999999999988876432211 1224467889999999999999999999999999999999999
Q ss_pred CCccCCCCCeeec
Q 006532 610 HVEENKRLPTIIL 622 (641)
Q Consensus 610 ~~d~~~~~~~~~~ 622 (641)
++|+++|++++++
T Consensus 547 ~~~d~~~~~~~~~ 559 (588)
T PRK08958 547 DRDDENWLCHSLY 559 (588)
T ss_pred CCCchhhceEEEE
Confidence 9998878877654
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-92 Score=788.90 Aligned_cols=523 Identities=34% Similarity=0.522 Sum_probs=451.0
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
.+.++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.+++|++
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~ 105 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQD 105 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 345799999999999999999999999 999999999988999999999987654 57999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEE
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
+++.+++++++.++||+++|++|+++.+|.+....+++|+ .+|+++..+.+|..++..|.+.+.+ .||+|+
T Consensus 106 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~ 184 (617)
T PTZ00139 106 AIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK-YDCNFF 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh-CCCEEE
Confidence 9999999999999999999999999888876665667764 4788888888999999999999987 599999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccc
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+++.+++|+.+++| +|+||++.+..+|+.+.|+||+|||||||++++|..++++..+||||+.||+++||.+.||||
T Consensus 185 ~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~mef 261 (617)
T PTZ00139 185 IEYFALDLIMDEDG---ECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEF 261 (617)
T ss_pred eceEEEEEEECCCC---EEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCce
Confidence 99999999985466 899999988778998899999999999999999999999999999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC----
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---- 382 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~---- 382 (641)
+||||+.+... .+++++.++++|++++|.+|+|||++|++. .++.+|+++++++..++.++.+
T Consensus 262 ~q~~pt~~~~~------------~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~ 329 (617)
T PTZ00139 262 VQFHPTGIYGA------------GCLITEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEILEGRGCGPN 329 (617)
T ss_pred EEeccccccCC------------CcEEEeeccCCCcEEECCCCCCcccccCccccccccchHHHHHHHHHHHhcCCCCCC
Confidence 99999876532 357888899999999999999999999887 5899999999999999876532
Q ss_pred -CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCc----------ccCCeeecc
Q 006532 383 -KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAG 450 (641)
Q Consensus 383 -~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T----------~ipGLyAaG 450 (641)
.++|+|.++++++.+.+++|.+.+.+.. .|+|+.++++||.|..||++|||.||.++|| +||||||||
T Consensus 330 ~~~v~lD~~~~~~~~l~~~~~~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaG 409 (617)
T PTZ00139 330 KDHIYLDLTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAG 409 (617)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEecccceecCCeEEcCCceeeccccccCCCccCCceecc
Confidence 4699999999999999999998888876 6999999999999999999999999999886 799999999
Q ss_pred cccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccc-cccch--hhhhchHHHHHHH
Q 006532 451 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG-CNVMH--NILRRTKEVRKEL 527 (641)
Q Consensus 451 e~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l 527 (641)
|++|+|+||+|||+||+|++|+|||++||++|+++.+....... .. .. ....... ...+. +....+.+++++|
T Consensus 410 E~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~~~~~~~~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 485 (617)
T PTZ00139 410 EAACASVHGANRLGANSLLDIVVFGRAAANTVMEILKPGRPQPD-LP--KD-AGEASIARLDKIRHNKGDISTAQIRKRM 485 (617)
T ss_pred cccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhhcccCCCcc-cc--hh-hhHHHHHHHHHHhcccCCcChHHHHHHH
Confidence 99988999999999999999999999999999988643210000 00 00 0000000 00000 0112477889999
Q ss_pred HHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccccccc
Q 006532 528 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMV 606 (641)
Q Consensus 528 ~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~ 606 (641)
|++||+|+||+|++++|++|+++|++|++++..+...+ ....++++++++|++|||++|+++++|||+|+||||+|||.
T Consensus 486 q~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~ 565 (617)
T PTZ00139 486 QRTMQKHAAVFRIGESLQEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAKQTILSAEARKESRGAHARD 565 (617)
T ss_pred HHHHhhhceeEECHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhccCcchhhccC
Confidence 99999999999999999999999999998876543211 12245788999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCeee
Q 006532 607 DFPHVEENKRLPTII 621 (641)
Q Consensus 607 D~P~~d~~~~~~~~~ 621 (641)
|||++||++|+++++
T Consensus 566 D~P~~~d~~~~~~~~ 580 (617)
T PTZ00139 566 DFPERDDKNWMKHTL 580 (617)
T ss_pred cCCcCCchhhceEEE
Confidence 999999877777775
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-92 Score=784.45 Aligned_cols=522 Identities=32% Similarity=0.488 Sum_probs=454.3
Q ss_pred cccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
+.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+++...+.|+++.|+.|+++.+.+++++++
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 4579999999999999999999987 5 899999999889999999999988878889999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
++.+++++++.++||+++|++|+++++|.+....+++|+++|.++..+.+|..+...|.+.+.+..+|++++++.+++|+
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 99999999999999999999999988888877788999999999988889999999999888775689999999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeec
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~ 316 (641)
.+ ++ +|.||++.+..+|+...|+||.|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+.
T Consensus 162 ~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt~~~ 237 (582)
T PRK09231 162 VD-DG---HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLP 237 (582)
T ss_pred Ee-CC---EEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccceeeecceeC
Confidence 86 56 899999988778888899999999999999999988889999999999999999999999999999998874
Q ss_pred CCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccc---------cc---cccCchhHHHHHHHHHHHhcC---
Q 006532 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------ER---AELAPRDVVARSIDDQLKKRN--- 381 (641)
Q Consensus 317 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~---------~~---~~~~~r~~~~~~i~~~~~~~~--- 381 (641)
.. .+++++.++++|++++|.+|+|||++|+ |. .++.+||+++++++.++..+.
T Consensus 238 ~~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~ 305 (582)
T PRK09231 238 GS------------GILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS 305 (582)
T ss_pred CC------------CceeeecccCCCeEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCcc
Confidence 31 4678888999999999999999999884 33 489999999999999987653
Q ss_pred ---CCeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCC
Q 006532 382 ---EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGL 457 (641)
Q Consensus 382 ---~~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~ 457 (641)
+..||+|+++.+.+.+.+++|++.+++++ .|+|+.++++++.|..|+++|||+||.+++|+||||||||||+|+|+
T Consensus 306 ~~~g~~v~ld~~~~~~~~~~~~~~~i~e~~~~~~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~ 385 (582)
T PRK09231 306 TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGL 385 (582)
T ss_pred CCCCCEEEEECCcCCHHHHHHHhhHHHHHHHHHcCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEeccccccccc
Confidence 23699999999988888899999999998 69999999999999999999999999999999999999999987799
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccch-----hhhhchHHHHHHHHHHHH
Q 006532 458 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NILRRTKEVRKELQSIMW 532 (641)
Q Consensus 458 ~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~m~ 532 (641)
||+||++||||++|+|||++||++|++|++....... ..... .... ...++. +....+.+++++||++||
T Consensus 386 hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~--~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 460 (582)
T PRK09231 386 HGANRLGSNSLAELVVFGRVAGEQAAERAATAGPGNE--AALDA-QAAD--VEQRLKALVNQEGGENWAKIRDEMGLSME 460 (582)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCccc--cchhh-HHHH--HHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754321100 00000 0000 000000 011347789999999999
Q ss_pred hcCccccCHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccC--CC
Q 006532 533 RYVGIVRSTTSLQTAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD--FP 609 (641)
Q Consensus 533 ~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D--~P 609 (641)
+++||+|++++|+++|.+|++|++++..+... .....++++++++|++|||++|+++++|||+|+||||+|||.| ||
T Consensus 461 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P 540 (582)
T PRK09231 461 EGCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSALARKESRGAHQRLDEGCT 540 (582)
T ss_pred hcCcEEECHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccchhcccccCCC
Confidence 99999999999999999999999887664221 1222457889999999999999999999999999999999999 99
Q ss_pred CCccCCCCCeeec
Q 006532 610 HVEENKRLPTIIL 622 (641)
Q Consensus 610 ~~d~~~~~~~~~~ 622 (641)
++|+++|.++++.
T Consensus 541 ~~~d~~~~~~~~~ 553 (582)
T PRK09231 541 ERDDVNFLKHTLA 553 (582)
T ss_pred ccChhhhceEEEE
Confidence 9988878877753
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-92 Score=786.16 Aligned_cols=554 Identities=24% Similarity=0.346 Sum_probs=456.1
Q ss_pred ccCCCCChhHhHhhhcccCccccCCCCccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC-CCccccccCceee
Q 006532 52 FNFSHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGGVSA 129 (641)
Q Consensus 52 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~-~g~s~~a~ggi~~ 129 (641)
.++|.+|..+.|....+.. .......+.++||||||||.|||+||+.|++.| +|+||||.... +|++.+++||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a 84 (640)
T PRK07573 7 AKIPEGPIEEKWDRYKFHL--KLVNPANKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINA 84 (640)
T ss_pred CCCCCCcchhhhhhccccc--cccCCccccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHh
Confidence 5688999999998776665 222344456899999999999999999999999 99999986554 4678889999876
Q ss_pred ccC---CCCCHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCc
Q 006532 130 VLC---PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206 (641)
Q Consensus 130 ~~~---~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~ 206 (641)
... +.|+++.|+.|+++.+.+++++++++.+++++++.++||+++|++|.++.++.+....+++|+++|.++..+.+
T Consensus 85 ~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~t 164 (640)
T PRK07573 85 AKNYQNDGDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQT 164 (640)
T ss_pred HhhccccCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCC
Confidence 543 57999999999999999999999999999999999999999999999877777777778999999999988888
Q ss_pred HHHHH----HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCC
Q 006532 207 GREIE----RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT 282 (641)
Q Consensus 207 g~~~~----~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~ 282 (641)
|..++ ..|.+.+++ .||+|++++.+++|+.+ ++ +|+||++.+..+|+...|.||+|||||||++++|..++
T Consensus 165 G~~i~~~l~~~L~~~~~~-~gV~i~~~t~v~~Li~d-~g---~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tt 239 (640)
T PRK07573 165 GQQLLLGAYQALSRQIAA-GTVKMYTRTEMLDLVVV-DG---RARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLST 239 (640)
T ss_pred chhHHHHHHHHHHHHHHh-cCCEEEeceEEEEEEEe-CC---EEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCCC
Confidence 87776 445556665 59999999999999986 56 89999998766788888999999999999999999899
Q ss_pred CcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCC------------
Q 006532 283 NPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGM------------ 350 (641)
Q Consensus 283 ~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G------------ 350 (641)
++..+||||+.||+++||.+.||||+||||+.+...+.. . ...++++++++++|+++||.+|
T Consensus 240 ~~~~~tGdGi~mA~~aGA~l~~me~vq~hPt~~~~~g~~----~--~~~~li~ea~rg~G~ilvn~~g~~~~~~~~~~~~ 313 (640)
T PRK07573 240 NAMGSNATAIWRAHKKGAYFANPCFTQIHPTCIPVSGDY----Q--SKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPEE 313 (640)
T ss_pred CCCCcCcHHHHHHHHcCCCccCccceeeccccccCCCcc----c--ccceEEeccccCCceEEEcCcccccccccccccc
Confidence 999999999999999999999999999999977543210 0 0146889999999999999984
Q ss_pred Cc--ccccccc-ccccCchhHHHHHHHHHHHhcCC-----CeEEEeCCC----CChhHHHhhChhHHHHHHH-cCCCCCC
Q 006532 351 ER--FMPLYDE-RAELAPRDVVARSIDDQLKKRNE-----KYVLLDISH----KPTEKILSHFPNIAAECLK-YGLDITS 417 (641)
Q Consensus 351 ~r--f~~~~~~-~~~~~~r~~~~~~i~~~~~~~~~-----~~v~lD~~~----~~~~~~~~~~~~~~~~~~~-~G~d~~~ 417 (641)
+| ||.+|.+ .++++|||+++++|+.|++++++ .+||||+++ .+.+.+.++||.+.+.+.+ .|+||.+
T Consensus 314 ~~~~f~~~~~~~~~el~~rd~v~rai~~e~~~grg~~~~~~~v~ld~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~d~~~ 393 (640)
T PRK07573 314 ERDYYLERRYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLFDMYERITGENPYE 393 (640)
T ss_pred hhhhchhhhCccccCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEeCchhhhhcCHHHHHHhChHHHHHHHHhcCCCccc
Confidence 56 9987665 47999999999999999988643 369999985 5667789999999999987 5999999
Q ss_pred CCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH-HHHhhhcc-cc-ccc
Q 006532 418 QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP-SIDHKKST-SI-DLS 494 (641)
Q Consensus 418 ~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~-aa~~~~~~-~~-~~~ 494 (641)
++|||.|++||+||||+||.+++|+||||||||||+ +|+||+|||+||||++|+|||++||+. |++|++.. .. ...
T Consensus 394 ~~i~v~p~~hy~~GGi~vd~~~~T~i~GLyAaGE~~-~g~HGanRL~~nsL~e~lv~G~~ag~~~a~~~~~~~~~~~~~~ 472 (640)
T PRK07573 394 TPMRIYPAVHYTMGGLWVDYNLMSTIPGLFVIGEAN-FSDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKVS 472 (640)
T ss_pred CeeeeecccceecCCEEECCCCccccCCEEECcccc-ccCCCcccccchhHHHHHHHHHHHhHHHHHHHHHhhcccccCC
Confidence 999999999999999999999999999999999995 799999999999999999999999988 66766432 10 000
Q ss_pred c-cccccccccCCccccccchh---h--hhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhc--cC
Q 006532 495 A-SNWWTRTVVPKSLGCNVMHN---I--LRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFE--HG 566 (641)
Q Consensus 495 ~-~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~--~~ 566 (641)
. ...... ... ....++.. . ..++.+++++||++||+|+||+|++++|++|+++|++|++++.+.... ..
T Consensus 473 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~ 549 (640)
T PRK07573 473 TDHPEFKE-AEA--EVQDRIDRLLNIKGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSA 549 (640)
T ss_pred ccccchhh-HHH--HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCccEEeCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 0 000000 000 00000000 0 124678899999999999999999999999999999998876542211 11
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCC------CCccCCCCCeeec
Q 006532 567 WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP------HVEENKRLPTIIL 622 (641)
Q Consensus 567 ~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P------~~d~~~~~~~~~~ 622 (641)
...++++++++|++||+++|+++++|||.|+||||+|||.||| ++||++|++++++
T Consensus 550 ~~~~~~~~~~~el~n~l~~A~~i~~aAl~R~ESRG~H~R~D~P~~~~~~~~~d~~~~~~~~~ 611 (640)
T PRK07573 550 DELNQELEKAGRVADFLELGELMCRDALHREESCGGHFREEHQTEDGEALRDDENFAYVAAW 611 (640)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCccCCCCccccccChhhhceEEEE
Confidence 1236778899999999999999999999999999999999999 6777667766654
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-91 Score=779.87 Aligned_cols=525 Identities=29% Similarity=0.421 Sum_probs=445.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC---CCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~---~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.+||||||||+|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.++++++++
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 469999999999999999999999 999999999988999999999987765 6799999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcC---CCcEEEcceEEEE
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAID 234 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~---~gv~i~~~~~v~~ 234 (641)
+.+++++++.++||+++|++|++..+|.+....+++|+++|+++..+.+|..++..|.+.+.+. .+|++++++.+++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~ 162 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG 162 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence 9999999999999999999999888888877888999999999888889999999998887653 2389999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccccccccee
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~ 314 (641)
|+++++| +|+||++.+..+++.+.|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.
T Consensus 163 Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef~q~hPt~ 239 (589)
T PRK08641 163 AVLDDEG---VCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTA 239 (589)
T ss_pred EEECCCC---EEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCccEEEeeee
Confidence 9986566 8999999987778888899999999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCCCCCCCCCCccceeeccccCCCcEE-EeCCCCc--cccc-cccccccCchhHHHHHHHHHHHh-c----CCCeE
Q 006532 315 LADEGLPIKPKKTRENSFLITEAVRGDGGIL-YNLGMER--FMPL-YDERAELAPRDVVARSIDDQLKK-R----NEKYV 385 (641)
Q Consensus 315 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~-vn~~G~r--f~~~-~~~~~~~~~r~~~~~~i~~~~~~-~----~~~~v 385 (641)
+...+ ..+++++.++++|+.+ +|.+|+| ||++ |++.+++.|||++++++..++.. + +...+
T Consensus 240 ~~~~~----------~~~l~~e~~rg~G~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~v~~ai~~~~~~~~~g~~g~~~v 309 (589)
T PRK08641 240 IPGDD----------KLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGINGENMV 309 (589)
T ss_pred ecCCC----------cceEeeeeeccCCcEEEECCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCCCCceE
Confidence 75321 1357899999999865 5799999 6664 54557899999999999997733 2 12469
Q ss_pred EEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccc
Q 006532 386 LLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLA 464 (641)
Q Consensus 386 ~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~ 464 (641)
|+|+++.+.+.+.++||.+.+.+.. .|+|+.++||+|.|.+||+||||+||.+++|+|||||||||++ +|+||+|||+
T Consensus 310 ~ld~~~~~~e~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~t~I~GLyAaGE~~-~g~hGanrlg 388 (589)
T PRK08641 310 YLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQMTNIPGLFAAGECD-YSYHGANRLG 388 (589)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceeeehHHheeCCCeEECCCCCeECCCEEECcccc-cCCCCCCccc
Confidence 9999999999999999998888887 5999999999999999999999999999999999999999997 6999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhccccccccccccc-ccccCCccccccchh-----hhhchHHHHHHHHHHHHhcCccc
Q 006532 465 SNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWT-RTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWRYVGIV 538 (641)
Q Consensus 465 g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~~~g~~ 538 (641)
||||++|+|||++||++|++|++............. ...... ....+.. ....+.+++++||++||+|+||+
T Consensus 389 gnsl~~~lv~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~ 466 (589)
T PRK08641 389 ANSLLSAIYGGMVAGPNAVEYIKGLGKSADDVSSSVFEQALKQ--EQEKFDNILSMDGTENAYVLHKELGEWMTDNVTVV 466 (589)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccccCCcchhhHHHHH--HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999998754211000000000 000000 0000000 01235678889999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCC
Q 006532 539 RSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRL 617 (641)
Q Consensus 539 R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~ 617 (641)
|++++|++||++|++|++++.++...+ ....+.++.+++|++|||++|+++++|||+|+||||+|||+|||++|+++|+
T Consensus 467 R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~~~~ 546 (589)
T PRK08641 467 RENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPERNDENWL 546 (589)
T ss_pred ECHHHHHHHHHHHHHHHHHHHhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCccCchhhh
Confidence 999999999999999998876643211 1123457788899999999999999999999999999999999999988788
Q ss_pred Ceeec
Q 006532 618 PTIIL 622 (641)
Q Consensus 618 ~~~~~ 622 (641)
+++++
T Consensus 547 ~~~~~ 551 (589)
T PRK08641 547 KTTMA 551 (589)
T ss_pred ceEEE
Confidence 77753
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-91 Score=777.95 Aligned_cols=526 Identities=37% Similarity=0.575 Sum_probs=450.1
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
..+.++||||||||.|||+||+.|++.| +|+||||....+|++.+++||+++..+ +.|+++.|+.|+++.+.+++++
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~ 87 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQ 87 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCH
Confidence 3456799999999999999999999999 999999999888999999999987665 5789999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccc-------cceeeccCCcHHHHHHHHHHHHHcCCCcEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~-------~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
++++.+++++++.++||+++|++|++..+|.+....+++|+. +|.++..+.+|..++..|.+.+.+ .|++++
T Consensus 88 ~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~-~gi~i~ 166 (591)
T PRK07057 88 DAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVA-AKTQFF 166 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHh-cCCEEE
Confidence 999999999999999999999999988888877777788754 688888888999999999998877 599999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccc
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+++.+++|+.+++| +|.||++.+..+|+...|+||+|||||||++++|..++++..++|||+.||+++||.+.||||
T Consensus 167 ~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~ 243 (591)
T PRK07057 167 VEWMALDLIRDADG---DVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEF 243 (591)
T ss_pred eCcEEEEEEEcCCC---eEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCccc
Confidence 99999999986556 899999988778888889999999999999999999999999999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC----
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE---- 382 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~~~~r~~~~~~i~~~~~~~~~---- 382 (641)
+||||+.+... .+++++.++++|+++||.+|+|||++|++ ..++.+||++++++..++.++.+
T Consensus 244 ~q~~pt~~~~~------------~~l~~e~~rg~g~ilvn~~GeRF~~~~~~~~~el~~rd~v~~ai~~e~~~g~g~~~~ 311 (591)
T PRK07057 244 WQFHPTGVAGA------------GVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPN 311 (591)
T ss_pred ccccCCccCCC------------ceEEeecccCCceEEECCCCCCchhhcCccccccccHHHHHHHHHHHHHhcCCcCCC
Confidence 99999865421 46788889999999999999999999987 46899999999999999876432
Q ss_pred -CeEEEeCCCCChhHHHhhChhHHHHHHHc-CCCCCCCCeeEeeeeccccCceEeCCCCCc---------ccCCeeeccc
Q 006532 383 -KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET---------NVRGLYVAGE 451 (641)
Q Consensus 383 -~~v~lD~~~~~~~~~~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T---------~ipGLyAaGe 451 (641)
.++|+|.++.+.+.+..++|++.+++.+. ++|+.++|+|+.|..||++|||.||.++|| +|||||||||
T Consensus 312 ~~~v~lD~~~~~~~~~~~~~~~i~e~~~~~~~~d~~~~pi~v~p~~h~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE 391 (591)
T PRK07057 312 GDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGE 391 (591)
T ss_pred CCEEEEeCCCCCHHHHHHHccHHHHHHHHhcCCCCCCCCeeeehhHheeCCCeeECCCCcEeccccCCCCeeCCeEeCcc
Confidence 46999999998888888999999999887 699999999999999999999999999998 7999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc--ccccccccccccccCCccccccchhhhhchHHHHHHHHH
Q 006532 452 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS--IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQS 529 (641)
Q Consensus 452 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 529 (641)
++|+|+||+|||+||||++|+|||++||++|+++++... ..+... ...... ..............+.+++++||+
T Consensus 392 ~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 468 (591)
T PRK07057 392 CSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKKQHEHKPLPAD-AADFSL--ARLAKLDKSTSGEYAQDVANDIRA 468 (591)
T ss_pred ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCcchhhh-hhHHHH--HHHhhhhccccccCHHHHHHHHHH
Confidence 998899999999999999999999999999998864321 011000 000000 000000000011247788999999
Q ss_pred HHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCc-ccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCC
Q 006532 530 IMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGW-EQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF 608 (641)
Q Consensus 530 ~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~ 608 (641)
+||+|+||+|++++|++||++|++|++++..+...+.. ..+.++++++|++|||++|+++++|||+|+||||+|||+||
T Consensus 469 ~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~ 548 (591)
T PRK07057 469 TMQKHAGVFRTQALLDEGVEQILALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDY 548 (591)
T ss_pred HHHhcCCeEECHHHHHHHHHHHHHHHHHHHHhccCCccchhchhhHHHHHHHhHHHHHHHHHHHHHhCCCCccccCCCCC
Confidence 99999999999999999999999999887664321111 12335688999999999999999999999999999999999
Q ss_pred CCCccCCCCCeeec
Q 006532 609 PHVEENKRLPTIIL 622 (641)
Q Consensus 609 P~~d~~~~~~~~~~ 622 (641)
|++++++|.+++++
T Consensus 549 P~~~d~~~~~~~~~ 562 (591)
T PRK07057 549 EHRDDENWLKHTLW 562 (591)
T ss_pred CCCCchhhcceEEE
Confidence 99988877777654
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-91 Score=779.76 Aligned_cols=521 Identities=34% Similarity=0.511 Sum_probs=450.2
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
+.++||||||||+|||+||+.|++.| +|+||||....+|++.+++||+++... +.|+++.|+.|+++.+.+++++++
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 45799999999999999999999999 999999999888999999999987655 579999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEEc
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFE 228 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~ 228 (641)
++.+++++++.++||+++|++|+++.+|.+....+++|+ ++|+++..+.+|..++..|.+.+.+ .||+|++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLK-HNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhh-cCCEEEE
Confidence 999999999999999999999999888887777778874 5788888888999999999999887 5999999
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccc
Q 006532 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 308 (641)
Q Consensus 229 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~ 308 (641)
++.+++|+++++| +|+||++.+..+|+.+.|.|++|||||||++++|..++++..+||||+.||+++||.+.||||+
T Consensus 169 ~~~v~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me~~ 245 (598)
T PRK09078 169 EYFALDLIMDDGG---VCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFV 245 (598)
T ss_pred eEEEEEEEEcCCC---EEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCchh
Confidence 9999999987446 8999999887788888999999999999999999888999999999999999999999999999
Q ss_pred cccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----
Q 006532 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE----- 382 (641)
Q Consensus 309 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~----- 382 (641)
||||+.+... .+++++.++++|+++||.+|+|||++|++. +++.+||++++++..++.++.+
T Consensus 246 q~~pt~~~~~------------~~l~~e~~rg~G~ilvN~~GeRF~~ey~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 313 (598)
T PRK09078 246 QFHPTGIYGA------------GCLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKK 313 (598)
T ss_pred eecccccCCC------------ceEEeecccCCceEEECCCCCCCchhcCccccccccchHHHHHHHHHHHhcCCCCCCC
Confidence 9999876421 457788899999999999999999999886 5899999999999999876532
Q ss_pred CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC----------cccCCeeeccc
Q 006532 383 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGE 451 (641)
Q Consensus 383 ~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~----------T~ipGLyAaGe 451 (641)
..+|+|+++++.+.+.+++|.+.+.+.. .|+|+.++|++|.|..||++|||.||.++| |+|||||||||
T Consensus 314 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~pi~v~p~~h~t~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE 393 (598)
T PRK09078 314 DHIFLHLDHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGE 393 (598)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcEEeecccEEcCCCcccCCCceeecccccccCCccCceeeccc
Confidence 4599999999999999999999888877 699999999999999999999999999987 48999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchh-----hhhchHHHHHH
Q 006532 452 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKE 526 (641)
Q Consensus 452 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 526 (641)
|+|+|+||+|||+||+|++|+|||++||++|+++++....... .. .. .... ....+.. ....+.+++++
T Consensus 394 ~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~-~~--~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 467 (598)
T PRK09078 394 AACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIKPGAPHPP-LP--KD-ACDK--ALDRFDRLRHANGGTPTAELRLK 467 (598)
T ss_pred ccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhhccCCCcc-cc--hh-hHHH--HHHHHHHhhhccCCCCHHHHHHH
Confidence 9988999999999999999999999999999988643211000 00 00 0000 0000000 01246788899
Q ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccc
Q 006532 527 LQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYM 605 (641)
Q Consensus 527 l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R 605 (641)
||++||+++||+|++++|++|+++|++|++++.++...+ ....++++++++|++||+++|+++++|||+|+||||+|||
T Consensus 468 l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R 547 (598)
T PRK09078 468 MQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAR 547 (598)
T ss_pred HHHHHhCCeeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccchhcc
Confidence 999999999999999999999999999998876542111 1123567889999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCeeec
Q 006532 606 VDFPHVEENKRLPTIIL 622 (641)
Q Consensus 606 ~D~P~~d~~~~~~~~~~ 622 (641)
.|||++|+++|+++++.
T Consensus 548 ~D~P~~~d~~~~~~~~~ 564 (598)
T PRK09078 548 EDFPDRDDENWMKHTLA 564 (598)
T ss_pred CCCCccCccccccEEEE
Confidence 99999988778777753
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-90 Score=767.67 Aligned_cols=519 Identities=47% Similarity=0.742 Sum_probs=444.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
+.++||||||+|.|||+||+.|++..+|+||||....+|+|.+++||+++..++.|+++.|+.|+++.+.+++++++++.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 46799999999999999999998744999999999888999999999998888889999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCccccCCC--C--CcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006532 160 VCTEGPDRIRELIAIGASFDRGED--G--NLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDL 235 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~--g--~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l 235 (641)
+++++++.++||+++|++|++..+ | .+....+++|+.+|+++..+.+|..+...|.+.+.+..||+|++++.+++|
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 999999999999999999987654 3 466677899999999999899999999999998877669999999999999
Q ss_pred EecC-----CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccc
Q 006532 236 LTTL-----DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQF 310 (641)
Q Consensus 236 ~~~~-----~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~ 310 (641)
+.++ ++ +|+||.+.+..+|+...|+|+.|||||||++++|..+++++.+||||+.||+++||.+.||||+||
T Consensus 166 i~~~~~~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~ 242 (536)
T PRK09077 166 ITSDKLGLPGR---RVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQF 242 (536)
T ss_pred eecccccCCCC---EEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcCccceeE
Confidence 9763 25 899999988777888889999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCC
Q 006532 311 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDIS 390 (641)
Q Consensus 311 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~ 390 (641)
||+.+..++ ...+++++.++++|+++||.+|+|||++|++..+++|||+++++|..++++.+..++|+|++
T Consensus 243 ~pt~~~~~~---------~~~~l~~e~~rg~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~g~~~v~ld~~ 313 (536)
T PRK09077 243 HPTCLYHPQ---------ARSFLITEALRGEGAYLKLPDGTRFMPDFDERAELAPRDIVARAIDHEMKRLGADCVYLDIS 313 (536)
T ss_pred ecceecCCC---------CCceeecHHHcCCCCEEECCCCCCcccccCcccccCchhHHHHHHHHHHHhcCCCeEEEECC
Confidence 999874321 11567889999999999999999999999998899999999999999998755568999999
Q ss_pred CCChhHHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHH
Q 006532 391 HKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLE 470 (641)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~ 470 (641)
+.+.+.+.+++|++++.+.+.|+|+.++|++|.|..||++|||+||.+++|+|||||||||++|+|+||+|||+||||++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~pi~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~ 393 (536)
T PRK09077 314 HKPADFIRQHFPTIYERCLELGIDITKEPIPVVPAAHYTCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLE 393 (536)
T ss_pred CCcHHHHHHHChHHHHHHHHhCcCCCCCceeeeeeeeEecCCeeECCCCccccCCEEecccccccccCCCccchhhhHHH
Confidence 99888888899999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHH
Q 006532 471 ALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWR 550 (641)
Q Consensus 471 a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~ 550 (641)
|+|||++||++|+++......+.. ........... . ..+ ..+...+++||++||+++||+|++++|++++++
T Consensus 394 ~~vfG~~Ag~~aa~~~~~~~~~~~-~~~~~~~~~~~----~-~~~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~ 465 (536)
T PRK09077 394 CLVYGRSAAEDILSRLPKAPMPPT-LPAWDESRVTD----S-DEE--VVIQHNWHELRLFMWDYVGIVRTTKRLERALHR 465 (536)
T ss_pred HHHHHHHHHHHHHHhhcccCcccc-cchhhhhhhhc----c-ccc--cchhHHHHHHHHHHHhCCCEEECHHHHHHHHHH
Confidence 999999999999887532110000 00000000000 0 000 113345579999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecC
Q 006532 551 IDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP 623 (641)
Q Consensus 551 l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~ 623 (641)
|++|++++..... .+ ....+++|++|||++|+++++|||.|+||||+|||.|||++|+++.++.+..+
T Consensus 466 l~~l~~~~~~~~~--~~---~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~ 533 (536)
T PRK09077 466 IRLLQQEIDEYYA--NF---RVSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPEAGPTILSPP 533 (536)
T ss_pred HHHHHHHHHHHhh--hc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCcccccccCceEeecC
Confidence 9999877643211 01 11135689999999999999999999999999999999999988544333334
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-90 Score=771.32 Aligned_cols=522 Identities=36% Similarity=0.557 Sum_probs=448.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
.++||||||||+|||+||+.|++..+|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.+++++++++
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~ 83 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE 83 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence 4689999999999999999998644999999999888889999999987665 57899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccc-------cceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceE
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHF 231 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~-------~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~ 231 (641)
.+++++++.++||+++|++|++..+|.+....+++|+. +|.++..+.+|..++..|.+.+++ .||++++++.
T Consensus 84 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gv~i~~~~~ 162 (583)
T PRK08205 84 IMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVK-HGVEFFNEFY 162 (583)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHh-cCCEEEeCCE
Confidence 99999999999999999999988888877777888854 788888888999999999998887 5999999999
Q ss_pred EEEEEecCC---CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccc
Q 006532 232 AIDLLTTLD---GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 308 (641)
Q Consensus 232 v~~l~~~~~---g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~ 308 (641)
|++|+++++ | +|+|+++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.+|||+
T Consensus 163 v~~Li~~~~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~ 239 (583)
T PRK08205 163 VLDLLLTETPSGP---VAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFH 239 (583)
T ss_pred EEEEEecCCccCC---cEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCccce
Confidence 999998643 6 8999999877788888899999999999999999989999999999999999999999999999
Q ss_pred cccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC-----
Q 006532 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE----- 382 (641)
Q Consensus 309 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~~~~r~~~~~~i~~~~~~~~~----- 382 (641)
||||+.+... .+++++.++++|++++|.+|+|||++|++ ..++.+|+++++++..++.++.+
T Consensus 240 q~~Pt~~~~~------------~~l~~e~~rg~g~ilvn~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 307 (583)
T PRK08205 240 QFHPTGLAGL------------GILISEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNK 307 (583)
T ss_pred EEecceecCC------------ceEeeecccCCceEEECCCCCCCccccCccccccccHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999876431 46788889999999999999999999987 46899999999999999876432
Q ss_pred CeEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC------cccCCeeecccccCC
Q 006532 383 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACT 455 (641)
Q Consensus 383 ~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~ 455 (641)
.++|+|.++.+.+.+..++|.+.+.++. .|+||.++++++.|..||++|||.||.+++ |+|||||||||++|+
T Consensus 308 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~ 387 (583)
T PRK08205 308 DYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACV 387 (583)
T ss_pred CEEEEecccCChHHHHHHcchHHHHHHHHcCCCcCCCceEEEeeeeEECCCeeECCCceEecCCCCCcCCeeeccccccC
Confidence 4699999999999999999999888887 799999999999999999999999999998 689999999999978
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc-cccccccc-ccccccCCccccccchhhhhchHHHHHHHHHHHHh
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNW-WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWR 533 (641)
Q Consensus 456 g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 533 (641)
|+||+|||+||+|++|+|||++||++|+++++... .+...... ...... ..... ......+.+++++||++||+
T Consensus 388 g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~lq~~m~~ 463 (583)
T PRK08205 388 SVHGANRLGTNSLLDINVFGRRAGIAAAEYARGADFVDLPENPEAMVVEWV-EDLLS---EHGNERVADIRGELQQSMDN 463 (583)
T ss_pred CCCCCcCCchhhHHHHHHHHHHHHHHHHHHhhccCccCCchhhHHHHHHHH-Hhhhc---cCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875321 11110000 000000 00000 00013467789999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCc
Q 006532 534 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVE 612 (641)
Q Consensus 534 ~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d 612 (641)
++||+|++++|++||++|++|++++.++...+ ....++++++++|++|||++|+++++|||.|+||||+|||.|||++|
T Consensus 464 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~p~~~ 543 (583)
T PRK08205 464 NASVFRTEETLKQALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPNRD 543 (583)
T ss_pred cCCEEECHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhCcCCcccccCCCCCCcC
Confidence 99999999999999999999998876643221 12345788999999999999999999999999999999999999999
Q ss_pred cCCCCCeeec
Q 006532 613 ENKRLPTIIL 622 (641)
Q Consensus 613 ~~~~~~~~~~ 622 (641)
+++|++++++
T Consensus 544 d~~~~~~~~~ 553 (583)
T PRK08205 544 DVNYMKHTMA 553 (583)
T ss_pred ccccceEEEE
Confidence 8888887764
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-90 Score=774.22 Aligned_cols=543 Identities=34% Similarity=0.466 Sum_probs=455.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC---CCCCHHHHHHHHHHhccCCCCHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~---~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
+.++||||||+|+|||+||+.|++.| +|+||||....+|+|.+++||+++..+ +.|+++.|+.|+++.+.++++++
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 45799999999999999999999999 999999999888899999999987754 46899999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCC-------C-----
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDP-------N----- 223 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~-------g----- 223 (641)
+++.+++++++.++||+++|++|++..+|.+....+++|+++|+++..+.+|..++..|.+.+.+.. |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 9999999999999999999999998888888878889999999999888899999999999887632 5
Q ss_pred cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeee
Q 006532 224 ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVIS 303 (641)
Q Consensus 224 v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~ 303 (641)
|++++++.|++|+.+ ++ +|.|+.+.+..+|+.+.|.|++|||||||++++|+.++++..++|||+.||+++||.+.
T Consensus 166 v~i~~~~~v~~L~~~-~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~ 241 (626)
T PRK07803 166 IKVFAECTITELLKD-GG---RIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLI 241 (626)
T ss_pred eEEEeCCEEEEEEEE-CC---EEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCCcEe
Confidence 999999999999986 56 89999988877888888999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-----------------------
Q 006532 304 NMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER----------------------- 360 (641)
Q Consensus 304 ~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~----------------------- 360 (641)
+|||+||||+.+..+. . ...++++++++++|++++|.+|+|||++|.+.
T Consensus 242 ~me~~q~~Pt~~~~~~-----~---~~~~li~e~~rg~g~ilvN~~G~RF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (626)
T PRK07803 242 NMEFVQFHPTGMVWPP-----S---VKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAETEEEADRWYKDNDNN 313 (626)
T ss_pred CCcceeecccccccCC-----C---cCceEEeeeccCCceEEECCCCCCccccccchhhhhhccccccchhhhhhccccc
Confidence 9999999998764221 0 12578899999999999999999999988754
Q ss_pred ---cccCchhHHHHHHHHHHHhcCC---CeEEEeC-CCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCc
Q 006532 361 ---AELAPRDVVARSIDDQLKKRNE---KYVLLDI-SHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGG 432 (641)
Q Consensus 361 ---~~~~~r~~~~~~i~~~~~~~~~---~~v~lD~-~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GG 432 (641)
.++.|||++++++..++.++.+ +.+|+|+ ++++++.+.+++|.++..+.+ .|+|+.++||++.|.+||++||
T Consensus 314 ~~~~~l~prd~v~~ai~~e~~~g~g~~~~~v~ldla~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~P~~h~~~GG 393 (626)
T PRK07803 314 RRPPELLPRDEVARAINSEVKAGRGSPHGGVYLDIASRLPAEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGG 393 (626)
T ss_pred ccccccccHHHHHHHHHHHHHhcCCCCCCcEEEEccccCCHHHHHHHhHHHHHHHHHHcCCCCCCCceeeeeecceecCC
Confidence 5788999999999999987642 3499999 789988999999997777766 6999999999999999999999
Q ss_pred eEeCCCC-CcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccccccc-ccccccccccCCcccc
Q 006532 433 VRAGLQG-ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS-ASNWWTRTVVPKSLGC 510 (641)
Q Consensus 433 I~vD~~~-~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 510 (641)
|+||.++ +|+||||||||||+ +|+||+|||+||||++|+|||++||++|+++++....... ......... . .. .
T Consensus 394 i~vd~~~~~t~IpGLYAaGE~a-gg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~-~-~~-~ 469 (626)
T PRK07803 394 VEVDPDTGAATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDAAA-R-EA-L 469 (626)
T ss_pred EEEcCCCCeeecCCeeEccccc-cccCcCccccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCChHHHHHHH-H-HH-H
Confidence 9999986 59999999999997 6999999999999999999999999999998753211000 000000000 0 00 0
Q ss_pred ccchhh--hhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHH
Q 006532 511 NVMHNI--LRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKL 588 (641)
Q Consensus 511 ~~~~~~--~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~ 588 (641)
...... ...+.+++++||++||+++||+|++++|++||.+|++|++++.++........+.++.+++|++|||++|++
T Consensus 470 ~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~ 549 (626)
T PRK07803 470 APFERPAGAENPYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEGHRQYNPGWHLALDLRNMLLVSEC 549 (626)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHhhceEEecHHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHhHHHHHHH
Confidence 000000 134677899999999999999999999999999999999887664322111123345688999999999999
Q ss_pred HHHHHHhcccCcccccccCCCCCccCCCCCeeecC---CCccccccccccccC
Q 006532 589 VVSSALARHESRGLHYMVDFPHVEENKRLPTIILP---SLVNCTWSSRQLHKL 638 (641)
Q Consensus 589 ~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~ 638 (641)
+++|||+|+||||+|||.|||++|++|++++++.. ++.+....+.|+..+
T Consensus 550 ~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 602 (626)
T PRK07803 550 VARAALERTESRGGHTRDDHPGMDPEWRRINLVCRADPVGGHVTVTRQPQPPM 602 (626)
T ss_pred HHHHHHhCCCCcccEeCCCCCccChhhhceEEEEecCCCCCceEEEEccCCCc
Confidence 99999999999999999999999977665555443 334666566655544
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-90 Score=772.03 Aligned_cols=526 Identities=37% Similarity=0.543 Sum_probs=452.3
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC----CeEEEEecCCCCCccccccCceeeccCC--CCCHHHHHHHHHHhccCCC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLC 152 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G----~V~llek~~~~~g~s~~a~ggi~~~~~~--~d~~~~~~~d~~~~g~~~~ 152 (641)
...++||||||||+|||+||+.|++.| +|+||||....+|++.+++||+++...+ .|+++.|+.|+++.+.+++
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 345799999999999999999999985 8999999999889999999999877654 6999999999999999999
Q ss_pred CHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 153 DDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
++++++.+++++++.++||+++|++|+++++|.+....+++|+++|+.+..+.+|..++..|.+.+.+..||++++++.+
T Consensus 82 d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v 161 (577)
T PRK06069 82 DQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFV 161 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEE
Confidence 99999999999999999999999999998889887788899999999999898999999999998876469999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccc
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 312 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p 312 (641)
++|+.+ ++ +|+||++.+..+|+...|+|+.|||||||++++|..++++..++|||+.||+++||.+.||||+||||
T Consensus 162 ~~Li~~-~g---~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~~q~~p 237 (577)
T PRK06069 162 TSLIVE-NG---VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHP 237 (577)
T ss_pred EEEEEE-CC---EEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCcceeEee
Confidence 999986 56 89999998877888778999999999999999999888888999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-------Ce
Q 006532 313 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-------KY 384 (641)
Q Consensus 313 ~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~-------~~ 384 (641)
+.+... .+++++.++++|+++||.+|+|||++|+|. .++.+|+++++++.+++.++++ .+
T Consensus 238 t~~~~~------------g~l~~e~~~g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~g~~~ 305 (577)
T PRK06069 238 TGLVPS------------GILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRGFKHESGLCY 305 (577)
T ss_pred eeeCCC------------CcEEEeeccCCCeEEECCCCCCcccccCccccccCCccHHHHHHHHHHHhcCCccCCCCceE
Confidence 877532 357788899999999999999999999874 6899999999999999876532 35
Q ss_pred EEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcc------cCCeeecccccCCCC
Q 006532 385 VLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETN------VRGLYVAGEVACTGL 457 (641)
Q Consensus 385 v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~------ipGLyAaGe~a~~g~ 457 (641)
+|+|.++.+.+.+.+++|++.+++.+ .|+|+.+++++|.|..||++|||+||.++||+ |||||||||++|+|+
T Consensus 306 v~ld~~~~~~~~~~~~~~~i~~~~~~~~g~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~ 385 (577)
T PRK06069 306 VGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSV 385 (577)
T ss_pred EEEecccCCHHHHHHHhhHHHHHHHHHcCCCCCCCceeeeeccceeCCCceECCCCcCcCCCCCEeCCeEeccccccccc
Confidence 99999999888888999999999988 79999999999999999999999999999998 999999999997799
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhccc-ccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCc
Q 006532 458 HGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVG 536 (641)
Q Consensus 458 ~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 536 (641)
||+||++||||++|+|||++||++|++++++.. ................ ............+.+++++||++||+|+|
T Consensus 386 hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 464 (577)
T PRK06069 386 HGANRLGSNSTAECLVWGRIAGEQAAEYALKRPAPSSPVEKLAEKEEKRI-FDKLLKKEGGEPSYEIRRELNDIMDKNFG 464 (577)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhhhhHHHHHH-HhhhhhccCCCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999875421 1110000000000000 00000000112467888999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCC
Q 006532 537 IVRSTTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 615 (641)
Q Consensus 537 ~~R~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~ 615 (641)
|+|++++|++||++|++|++++.++...+. ...++++++++|++||+++|+++++|||.|+||||+|||+|||++|+++
T Consensus 465 i~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~ 544 (577)
T PRK06069 465 IFRDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPKRDDEN 544 (577)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCCccCchh
Confidence 999999999999999999988766432111 1235788999999999999999999999999999999999999998877
Q ss_pred CCCeee
Q 006532 616 RLPTII 621 (641)
Q Consensus 616 ~~~~~~ 621 (641)
|.++++
T Consensus 545 ~~~~~~ 550 (577)
T PRK06069 545 WLKHTL 550 (577)
T ss_pred hhceEE
Confidence 777654
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-90 Score=771.18 Aligned_cols=524 Identities=27% Similarity=0.371 Sum_probs=442.4
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCceeeccC---CCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~-~~~g~s~~a~ggi~~~~~---~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
|||||+|+|||+||+.|++.| +|+||||.. ..+|++.+++||+++..+ ..|+++.|+.|+++.+.+++++++++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 80 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKR 80 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 799999999999999999999 999999998 556788889998876543 578999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcC---CCcEEEcceEEEEEE
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAIDLL 236 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~---~gv~i~~~~~v~~l~ 236 (641)
+++++++.++||+++|++|.++.+|.+....+++|+++|+++..+.+|..++..|.+.+++. .||++++++.+++|+
T Consensus 81 l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li 160 (603)
T TIGR01811 81 LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDII 160 (603)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEE
Confidence 99999999999999999999888887777778999999999888888999988887766542 489999999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeec
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~ 316 (641)
++++| +|+||++.+..+|+...|.||.|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+.
T Consensus 161 ~dd~g---rV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~vq~~Pt~~~ 237 (603)
T TIGR01811 161 VVDGN---RARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIP 237 (603)
T ss_pred EcCCC---EEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcceEEEeeeec
Confidence 87556 899999988667887889999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCccceeeccccCCCcEEEeC------------CCCc--cccc-cccccccCchhHHHHHHHHHHHhcC
Q 006532 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNL------------GMER--FMPL-YDERAELAPRDVVARSIDDQLKKRN 381 (641)
Q Consensus 317 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~------------~G~r--f~~~-~~~~~~~~~r~~~~~~i~~~~~~~~ 381 (641)
..|... ...++++++++++|++++|. +|+| ||.+ |++.++++|||+++++|+.++++++
T Consensus 238 ~~g~~~------~~~~li~ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~vs~ai~~~~~~g~ 311 (603)
T TIGR01811 238 VDGTWQ------SKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAIFQVCDAGK 311 (603)
T ss_pred CCCccc------ccceEeeeeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHHHHHHHHHHHHhcC
Confidence 432100 01367899999999999999 9999 8864 5567899999999999999998753
Q ss_pred -----CCeEEEeCCCCCh----hHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeeccc
Q 006532 382 -----EKYVLLDISHKPT----EKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGE 451 (641)
Q Consensus 382 -----~~~v~lD~~~~~~----~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe 451 (641)
+.+||||+++.+. +.+.++||.+.+.+.+ .|+|+.++||||.|++||+||||+||.+++|+|||||||||
T Consensus 312 g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~H~~~gG~~~d~~~~t~i~gL~a~Ge 391 (603)
T TIGR01811 312 GVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQMTNIPGLFAAGE 391 (603)
T ss_pred CcCCCCCeEEEEcCCCcccccHHHHHHHhHHHHHHHHHhcCCCccCCeeeeecccceeCCCeeECCCCcccCCCEEECcc
Confidence 2469999999987 7789999999999988 69999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc---ccccc-ccccccccCCccccccchhh-----hhchHH
Q 006532 452 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI---DLSAS-NWWTRTVVPKSLGCNVMHNI-----LRRTKE 522 (641)
Q Consensus 452 ~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 522 (641)
|+ +|+||+|||+||||++|+|||++||++|++|++.... +.... ..... .... ...++..+ ...+.+
T Consensus 392 ~~-~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~ 467 (603)
T TIGR01811 392 CD-FSQHGANRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQA-ALAE--EQERFDRLLKMRGDENPYY 467 (603)
T ss_pred cc-cCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhh-HHHH--HHHHHHHHhhccCCCCHHH
Confidence 97 6999999999999999999999999999998643210 00000 00000 0000 00000000 124678
Q ss_pred HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhh-cc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 006532 523 VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF-EH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR 600 (641)
Q Consensus 523 ~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~-~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR 600 (641)
++++||++||+++||+|++++|++||++|++|++++.+.+. .+ ....+.++++++|++|||++|+++++|||+|+|||
T Consensus 468 ~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESR 547 (603)
T TIGR01811 468 LHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELAELMCLDALNRNESC 547 (603)
T ss_pred HHHHHHHHHHcCeeEEECHHHHHHHHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 89999999999999999999999999999999988754221 11 11234577889999999999999999999999999
Q ss_pred ccccccCCC------CCccCCCCCeee
Q 006532 601 GLHYMVDFP------HVEENKRLPTII 621 (641)
Q Consensus 601 G~h~R~D~P------~~d~~~~~~~~~ 621 (641)
|+|||+||| ++||++|+++++
T Consensus 548 G~H~R~D~P~~~~~~~~~d~~~~~~~~ 574 (603)
T TIGR01811 548 GAHFRPEFPTPDGEAERNDEEFLKVTA 574 (603)
T ss_pred cccccccCCCccccccCChhhhheeEE
Confidence 999999999 777777777765
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-90 Score=768.75 Aligned_cols=522 Identities=34% Similarity=0.556 Sum_probs=446.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCceeecc---CCCCCHHHHHHHHHHhccCCCCH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~ggi~~~~---~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+.+.. .+.|+++.|+.|+++.+.+++++
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999986 5 89999999888888889999987665 35689999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
++++.+++++++.++||+++|++|++.++|.+....+++|+++|.++..+.+|..++..|.+.+++ .||++++++.|++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~t~v~~ 160 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRR-YGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhh-CCCEEEeCcEEEE
Confidence 999999999999999999999999998888877778899999999999999999999999999987 5999999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccccccccee
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 314 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~ 314 (641)
|+.+ ++ +|.|+++.+..+|+...|+|++|||||||++++|..++++..++|||+.||+++|+.+.+|||+||||+.
T Consensus 161 L~~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~qf~pt~ 236 (575)
T PRK05945 161 LILE-DN---QAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHPTG 236 (575)
T ss_pred EEEE-CC---EEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcceEEeeee
Confidence 9986 66 8999998877788877899999999999999999988999999999999999999999999999999987
Q ss_pred ecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC---------Ce
Q 006532 315 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---------KY 384 (641)
Q Consensus 315 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~---------~~ 384 (641)
+... .+++++.++++|+++||.+|+|||++|+|. .++.+||++++++.+++.++++ ..
T Consensus 237 ~~~~------------~~l~~~~~rg~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~~~~~g~g~~~~~~~~~~~ 304 (575)
T PRK05945 237 LYPV------------GVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINPDGSAGGPF 304 (575)
T ss_pred ecCC------------CeEEeeecccCceEEECCCCCCcccccCccccccCchhHHHHHHHHHHHhcCCCCCcccCCCCE
Confidence 6421 457788889999999999999999999885 5899999999999999876432 35
Q ss_pred EEEeCCCCChhHHHhhChhHHHHH-HHcCCCCCCCCeeEeeeeccccCceEeCCCCCc------ccCCeeecccccCCCC
Q 006532 385 VLLDISHKPTEKILSHFPNIAAEC-LKYGLDITSQPIPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTGL 457 (641)
Q Consensus 385 v~lD~~~~~~~~~~~~~~~~~~~~-~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T------~ipGLyAaGe~a~~g~ 457 (641)
+|+|+++.+.+.+.+++|.+.+.+ ...|+|+.+++++|.|..|+++|||+||.+++| +|||||||||++|+|+
T Consensus 305 v~ld~~~~~~~~~~~~~~~~~~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~ 384 (575)
T PRK05945 305 VYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSV 384 (575)
T ss_pred EEEECCCCCHHHHHHHhHHHHHHHHHHhCcCCCCceEEeeccceecCCCeeECCCceeccCCCCccCCeEeeeccccccc
Confidence 999999998887888888655444 458999999999999999999999999999986 7999999999998899
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc-cccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCc
Q 006532 458 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSI-DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVG 536 (641)
Q Consensus 458 ~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 536 (641)
||+|||+||+|++|+|||++||++|+++++.... +.+......... ..............+.+++++||++||+|+|
T Consensus 385 hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 462 (575)
T PRK05945 385 HGANRLGSNSLLECVVYGRRTGAAIAEYVQGRKLPEVDEQRYLKEAK--QRIQALLDQSGTYRINQLRQQFQDCMTDHCG 462 (575)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHH--HHHhhhhccccccChHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999999998753211 110000000000 0000000000112467889999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCC
Q 006532 537 IVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 615 (641)
Q Consensus 537 ~~R~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~ 615 (641)
|+|++++|++|+++|++|++++.++...+ ....++++++++|++|||++|+++++|||+|+||||+|||.|||++|+++
T Consensus 463 i~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~ 542 (575)
T PRK05945 463 VFRTEEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRGAHSREDYPQRDDQN 542 (575)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHhccccccccccChhHHHHHHHHhHHHHHHHHHHHHHhCCCcccccccCCCCcCCchh
Confidence 99999999999999999998877643221 12235788999999999999999999999999999999999999999887
Q ss_pred CCCeee
Q 006532 616 RLPTII 621 (641)
Q Consensus 616 ~~~~~~ 621 (641)
|+++++
T Consensus 543 ~~~~~~ 548 (575)
T PRK05945 543 FLKHTL 548 (575)
T ss_pred hhceEE
Confidence 887765
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-89 Score=752.23 Aligned_cols=507 Identities=45% Similarity=0.653 Sum_probs=440.8
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
.++.++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++..++.|+++.|+.|+++.+.+++++++
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~ 91 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDA 91 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 4567899999999999999999999999 999999999888999999999998888899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeec-cCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDL 235 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~-~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l 235 (641)
++.+++++++.++||+++|++|+++.+|.+....+++|+.+|+++. .+.+|..+...|.+.+++ .+|++++++.|++|
T Consensus 92 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~-~gV~i~~~~~v~~L 170 (541)
T PRK07804 92 VRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRA-DPLDIREHALALDL 170 (541)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHh-CCCEEEECeEeeee
Confidence 9999999999999999999999998889888888899999998887 367899999999999987 48999999999999
Q ss_pred EecCCCCCceEEEEEEEecC---CCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccc
Q 006532 236 LTTLDGPDAVCHGVDTLNVE---TQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 312 (641)
Q Consensus 236 ~~~~~g~~~~v~Gv~~~~~~---~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p 312 (641)
++++++ +|+|+.+.+.. ++....|+||.||+||||++.+|..+++++.+||||+.||+++|+.+.+|||+||||
T Consensus 171 i~~~~g---~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~q~~p 247 (541)
T PRK07804 171 LTDGTG---AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHP 247 (541)
T ss_pred EEcCCC---eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcceeEec
Confidence 987556 89999887431 233467999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 006532 313 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHK 392 (641)
Q Consensus 313 ~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~ 392 (641)
+.+..... .....+++++.++++|++++|.+|+|||++|++..|+.|||++++++..++.+.+..++|+|.++
T Consensus 248 t~~~~~~~------~~~~~~l~~~~~r~~g~~lvn~~G~RF~~~~~~~~E~a~rd~v~~ai~~~~~~~g~~~v~lD~~~- 320 (541)
T PRK07804 248 TVLFLGPA------AGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLADLAPRDVVAKAIDRRMKATGDDHVYLDARG- 320 (541)
T ss_pred ceecCCcc------cccccceechhhcCCceEEECCCCCCCccccCcccccCcHHHHHHHHHHHHHhcCCCEEEEeCcc-
Confidence 87753210 01114678888999999999999999999999988999999999999999976555689999984
Q ss_pred ChhHHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHH
Q 006532 393 PTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 472 (641)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~ 472 (641)
.+.+..++|++.+++++.|+|+.+++++|.|..|+++|||+||++++|+|||||||||++|+|+||+||++|+++.+++
T Consensus 321 -~~~~~~~~p~i~~~~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~ 399 (541)
T PRK07804 321 -IEGFARRFPTITASCRAAGIDPVRQPIPVAPAAHYSCGGVVTDVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGL 399 (541)
T ss_pred -HHHHHHHhhHHHHHHHHhCcCCcCCeEEEEHHHhhcCCCEEECCCCcccCCCeEEcccccccccCCCcccHHHHHHHHH
Confidence 4677789999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Q 006532 473 VFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRID 552 (641)
Q Consensus 473 v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~ 552 (641)
+||++||++|+++.+.... ... .. .+. ......+.+++++||++||+++||+|++++|++||++|+
T Consensus 400 v~G~~ag~~aa~~~~~~~~--~~~--~~---~~~-------~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~ 465 (541)
T PRK07804 400 VVGERAGAAAAAHAAAAGR--PRA--TP---AVG-------PEPGLLPALDRAELQRAMTRGAGVLRSAAGLARAADRLA 465 (541)
T ss_pred HHHHHHHHHHHHhhcccCc--ccc--ch---hhc-------ccccCchHHHHHHHHHHHHhcCCeEEcHHHHHHHHHHHH
Confidence 9999999999887532211 000 00 000 011134677889999999999999999999999999998
Q ss_pred HHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 553 ELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 553 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
++.... .+++...+|++|||++|+++++|||.|+||||+|||+|||++|++ |.+++++
T Consensus 466 ~~~~~~-----------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~-~~~~~~~ 523 (541)
T PRK07804 466 AGAPAR-----------VVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFPDTDDE-WARSIVV 523 (541)
T ss_pred HHHhhc-----------ccchhHHHHHHhHHHHHHHHHHHHHhcCCCcccccCCCCCccChh-hhceEEE
Confidence 864211 123467789999999999999999999999999999999999984 5565553
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-88 Score=744.55 Aligned_cols=489 Identities=41% Similarity=0.576 Sum_probs=429.9
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC-CCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~-~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
.+.++||||||+|.|||+||+.|+ + +|+||||... .+|+|.+++||+++..++.|+++.|++|+++.+.+++++++
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~ 83 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAV 83 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 356799999999999999999997 6 9999999987 56788899999988888889999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeec-cCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDL 235 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~-~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l 235 (641)
++.+++++++.++||+++|++|++.++|.+....+++|+.+|+++. .+.+|..++..|.+.+.+..||++++++.+++|
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~L 163 (513)
T PRK07512 84 AALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRL 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhe
Confidence 9999999999999999999999988888877778899999999987 467899999999998876459999999999999
Q ss_pred EecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceee
Q 006532 236 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315 (641)
Q Consensus 236 ~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~ 315 (641)
+.+ ++ +|+|+.+.+ +++...|+||.|||||||++++|..+++++.+||||+.||+++||.+.+|||+||||+.+
T Consensus 164 i~~-~g---~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~Pt~~ 237 (513)
T PRK07512 164 LVD-DG---AVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAI 237 (513)
T ss_pred eec-CC---EEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEEEeeee
Confidence 876 56 899998875 344567999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChh
Q 006532 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE 395 (641)
Q Consensus 316 ~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~ 395 (641)
...+. ..+++++.++++|+++||.+|+|||++|++..++.||+++++++.+++.++ ..+|+|.++.+.+
T Consensus 238 ~~~~~---------~~~l~~~~~rg~g~~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~~~g--~~v~ld~~~~~~~ 306 (513)
T PRK07512 238 DIGRD---------PAPLATEALRGEGAILINEDGERFMADIHPGAELAPRDVVARAVFAEIAAG--RGAFLDARAALGA 306 (513)
T ss_pred cCCCC---------CcceeehhhhCCceEEECCCCCChhhhcCCccccCcHHHHHHHHHHHHhcC--CEEEEeccccchH
Confidence 54211 145788889999999999999999999999889999999999999998764 4689999988877
Q ss_pred HHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHH
Q 006532 396 KILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFA 475 (641)
Q Consensus 396 ~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G 475 (641)
.+.+++|++.+++.+.|+|+.+++++|.|..|+++|||+||.+++|+||||||||||+|+|+||+||++||||++|+|||
T Consensus 307 ~~~~~~~~i~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G 386 (513)
T PRK07512 307 HFATRFPTVYAACRSAGIDPARQPIPVAPAAHYHMGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFA 386 (513)
T ss_pred HHHHHhhHHHHHHHHhCcCCCCCceEEecccCEEcCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHH
Q 006532 476 RRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELE 555 (641)
Q Consensus 476 ~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~ 555 (641)
++||++|+++...... +..+.. . . ..+.+..++||++||+|+||+|++++|+++|.+|++|+
T Consensus 387 ~~ag~~aa~~~~~~~~----------~~~~~~--~----~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~ 448 (513)
T PRK07512 387 ARAAEDIAGTPAAAAA----------PLSAAA--A----P--ALDPADLALLRPIMSRHVGVLRDADGLRRAIAALLPLE 448 (513)
T ss_pred HHHHHHHHHHhhcccc----------cccccc--c----c--cccHHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHH
Confidence 9999999887532210 000000 0 0 11234557899999999999999999999999999997
Q ss_pred HHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecC
Q 006532 556 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP 623 (641)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~~ 623 (641)
++.. +++||+++|+++++|||.|+||||+|||+|||++|++ |++++++.
T Consensus 449 ~~~~------------------~~~~~~~~a~~~~~aal~R~ESRG~H~R~D~p~~~~~-~~~~~~~~ 497 (513)
T PRK07512 449 AGAG------------------PAADPATVALLIAVAALAREESRGAHFRTDFPLTAPA-ARRTRLTL 497 (513)
T ss_pred HHHH------------------HHHhHHHHHHHHHHHHHhCCCCccceeCCcCCccchh-hcceEEEe
Confidence 6421 3579999999999999999999999999999999988 55555443
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-88 Score=747.41 Aligned_cols=519 Identities=38% Similarity=0.589 Sum_probs=445.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC-CCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~-~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
+.++||||||+|.|||+||+.| +.| +|+||||... .+|++.+++|++++..++.|+++.|+.|+++.+.+++|++++
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 4679999999999999999999 899 9999999875 467788899999888888899999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
+.+++++++.++||+++|++|.++++|.+....+++|+++|.++..+.+|..+...|.+.+++ .||++++++.+++|++
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIK-ERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhc-CCCEEEeCeEeeeeEE
Confidence 999999999999999999999988888777777899999999998888899999999998887 6999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 317 (641)
++++ +|+|+++.+..+|+.+.|+||.|||||||++.+|+.+++++.+||||+.||+++||.+.+|||+||||+.+..
T Consensus 163 ~~~~---~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~~q~~p~~~~~ 239 (543)
T PRK06263 163 DENR---EVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGMVY 239 (543)
T ss_pred eCCc---EEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccceeEecceecc
Confidence 7443 6999998876678888899999999999999999999999999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC---CeEEEeCCCCC
Q 006532 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE---KYVLLDISHKP 393 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-~~~~~~r~~~~~~i~~~~~~~~~---~~v~lD~~~~~ 393 (641)
+.. ...+++++.++++|+++||.+|+||+++|++ ..++.+|+++++++.+++..+++ ..+|+|.++++
T Consensus 240 ~~~--------~~~~~~~~~~~~~g~~lvn~~G~RF~~~y~~~~~e~~~~~~~~~ai~~~~~~g~g~~~~~~~ld~~~~~ 311 (543)
T PRK06263 240 PYS--------GRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGTNHGGVYLDVTHLP 311 (543)
T ss_pred CCC--------CCceEEeeeecCCccEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCceEEEECCCCC
Confidence 210 1145677888889999999999999999998 46899999999999999876442 24999999999
Q ss_pred hhHHHhhChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHH
Q 006532 394 TEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALV 473 (641)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v 473 (641)
.+.+.+.+|.+++.+.+.|+|+.++|+++.|..|+++|||+||+++||+|||||||||++ +|+||+||++||+|++|+|
T Consensus 312 ~~~l~~~~~~~~~~~~~~G~D~~~~pi~v~p~~~~t~GGi~vd~~~~t~IpGLyAaGE~~-gg~hG~~rlgG~sl~~a~v 390 (543)
T PRK06263 312 DEVIEEKLETMLEQFLDVGVDIRKEPMEVAPTAHHFMGGIRINEDCETNIPGLFACGEVA-GGVHGANRLGGNALADTQV 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCEEEeccccEecCCEEECCCCcccCCCeEeccccc-cCCCCCCccchhhhhhhHH
Confidence 888888898877777778999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCCccccccc--hhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 006532 474 FARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVM--HNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551 (641)
Q Consensus 474 ~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l 551 (641)
||++||++|+++++..... .......... .... ..+ ......+.+++++||++||+++|++|++++|++||++|
T Consensus 391 ~Gr~Ag~~aa~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l 466 (543)
T PRK06263 391 FGAIAGKSAAKNAENNEFK-KVNRSVEEDI--ARIK-SEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEI 466 (543)
T ss_pred HHHHHHHHHHHHhhhcCCC-cchhhhhhhH--HHHH-HHhhhcccCCCHHHHHHHHHHHHHhhCcEEEcHHHHHHHHHHH
Confidence 9999999999987532210 0000000000 0000 000 01123578899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeee
Q 006532 552 DELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 621 (641)
Q Consensus 552 ~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~ 621 (641)
++|++++..+. ..+.+++++++|++||+++|+++++|||+|+||||+|||.|||++|| +|.++++
T Consensus 467 ~~l~~~~~~~~----~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~-~~~~~~~ 531 (543)
T PRK06263 467 NELKEKLKDLK----VNGIVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYPETND-EWFGNII 531 (543)
T ss_pred HHHHHHHHhcc----cccchhhHHHHHHHHHHHHHHHHHHHHHhCCCCcceeccCCCCccCh-hhcCeEE
Confidence 99998876543 23457889999999999999999999999999999999999999998 4566554
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-87 Score=750.86 Aligned_cols=522 Identities=40% Similarity=0.580 Sum_probs=446.8
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC---CCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~---~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
||||||+|+|||+||+.|++.| +|+||||....+|++.+++||+++... +.|+++.++.|+++.+.+++++++++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999 999999999888888889999887653 568999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
+++++++.++||+++|++|.+.++|.+....+++|+.+|..+..+.+|..+...|.+.+++. ||++++++.+++|+.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~- 158 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKL-GVSFFNEYFALDLIHD- 158 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHc-CCEEEeccEEEEEEEe-
Confidence 99999999999999999999888887776778999999999888889999999999988874 9999999999999986
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 319 (641)
+| +|+||++.+..+|+...|+||.|||||||++.+|..+++++.++|||+.|++++||.+.+|||+||||+.+...
T Consensus 159 ~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~q~~p~~~~~~- 234 (566)
T TIGR01812 159 DG---RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPS- 234 (566)
T ss_pred CC---EEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcceEEeeeeeCCC-
Confidence 56 89999998777787778999999999999999999889999999999999999999999999999999876421
Q ss_pred CCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC------CeEEEeCCCC
Q 006532 320 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE------KYVLLDISHK 392 (641)
Q Consensus 320 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~------~~v~lD~~~~ 392 (641)
.+++++.++++|+++||.+|+|||++|++. .++.+|+++++++.+++.++.+ .++|+|+++.
T Consensus 235 -----------~~~~~e~~~~~g~~lvn~~G~RF~~~~~~~~~e~~~r~~~~~ai~~~~~~~~g~~~~~~~~v~~d~~~~ 303 (566)
T TIGR01812 235 -----------GILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHL 303 (566)
T ss_pred -----------CcEEeccccCCceEEECCCCCCCCcccCccccccCchhHHHHHHHHHHHhcCCCCCCCCCEEEEECCCC
Confidence 356788889999999999999999999874 6899999999999999876432 4699999999
Q ss_pred ChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC----cccCCeeecccccCCCCCCCCccchhh
Q 006532 393 PTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----TNVRGLYVAGEVACTGLHGANRLASNS 467 (641)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~----T~ipGLyAaGe~a~~g~~Ga~rl~g~s 467 (641)
+.+.+.+++|++.+++.+ .|+|+.++++++.|..|+++|||+||.++| |+|||||||||++|+|+||+|||+||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~s 383 (566)
T TIGR01812 304 GEEKIEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNS 383 (566)
T ss_pred CHHHHHHHchHHHHHHHHHcCCCCCCCceeeehhhcccCCCeEECcCcccccCcccCCeeecccccccCcCcccccchhh
Confidence 888888899999999998 599999999999999999999999999999 999999999999988999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHH
Q 006532 468 LLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTA 547 (641)
Q Consensus 468 l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~a 547 (641)
|++|+|||++||++|+++++....+...........................+.+++++||++||+++||+|++++|+++
T Consensus 384 l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~~a 463 (566)
T TIGR01812 384 LLELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKA 463 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHhccceecHHHHHHH
Confidence 99999999999999999875421110000000000000000000000011346778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 548 EWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 548 l~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
+.+|++|++++..+... .....+++++.++|++||+++|+++++|||+|+||||+|||.|||++|+++|.++++.
T Consensus 464 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~ 539 (566)
T TIGR01812 464 VDEIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDDENWLKHTLA 539 (566)
T ss_pred HHHHHHHHHHHHhhcccCcccccCHhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCCcCcccccceEEE
Confidence 99999998877654211 1122357788999999999999999999999999999999999999998878877653
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-87 Score=746.68 Aligned_cols=509 Identities=36% Similarity=0.533 Sum_probs=437.9
Q ss_pred HHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc---CCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHH
Q 006532 95 LCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRE 170 (641)
Q Consensus 95 l~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~---~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~i~~ 170 (641)
|+||+.|++.| +|+||||....+|+|.+++|||++.. .+.|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999998999999999998776 467999999999999999999999999999999999999
Q ss_pred HHHcCCccccCCCCCcccccCCCccc--------cceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006532 171 LIAIGASFDRGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 242 (641)
Q Consensus 171 l~~~Gv~~~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 242 (641)
|++||++|+++++|.+....+++|+. +|+++..+.+|..++..|.+.+.+ .||++++++.+++|+.+++|
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~~~g- 158 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLK-NGTTFLNEWYAVDLVKNQDG- 158 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhc-cCCEEEECcEEEEEEEcCCC-
Confidence 99999999998899888777888864 599999899999999999999887 59999999999999986566
Q ss_pred CceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCC
Q 006532 243 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322 (641)
Q Consensus 243 ~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~ 322 (641)
+|+||++.+..+|+.+.|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.+...
T Consensus 159 --~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~~q~~Pt~~~~~---- 232 (570)
T PRK05675 159 --AVVGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGA---- 232 (570)
T ss_pred --eEEEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccceeeecceeCCC----
Confidence 89999998888899999999999999999999999999999999999999999999999999999999877431
Q ss_pred CCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----CeEEEeCCCCChhH
Q 006532 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPTEK 396 (641)
Q Consensus 323 ~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~-----~~v~lD~~~~~~~~ 396 (641)
.+++++.++++|++++|.+|+|||++|++. .++.+||+++++|..++..+.+ ..+|+|.++++.+.
T Consensus 233 --------~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~~~~~~v~ld~~~l~~~~ 304 (570)
T PRK05675 233 --------GVLVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEV 304 (570)
T ss_pred --------ceEeeccccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCccCCCCEEEEEcCCCCHHH
Confidence 467888899999999999999999999876 5899999999999999876532 35999999999888
Q ss_pred HHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCCc----------ccCCeeecccccCCCCCCCCccch
Q 006532 397 ILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGEVACTGLHGANRLAS 465 (641)
Q Consensus 397 ~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T----------~ipGLyAaGe~a~~g~~Ga~rl~g 465 (641)
+..++|.+.+.++. .|+||.++|++|.|..||+||||.||.+++| +|||||||||++|+|+||+|||+|
T Consensus 305 l~~~~~~~~~~~~~~~~~d~~~~~i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlgg 384 (570)
T PRK05675 305 LHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGG 384 (570)
T ss_pred HHHhccHHHHHHHHhcCCCcCCCceEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCcccccc
Confidence 89999998888877 4899999999999999999999999999986 799999999999889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHH
Q 006532 466 NSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTS 543 (641)
Q Consensus 466 ~sl~~a~v~G~~Ag~~aa~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~ 543 (641)
|||++|+|||++||++|+++++.... +..... ..... .........+....+.+++++||++||+|+||+|++++
T Consensus 385 nsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~ 461 (570)
T PRK05675 385 NSLLDLVVFGRAAGLHLEKALKEGIEYRDASESD-IDAAL--ARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEY 461 (570)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccccCChHH-HHHHH--HHHHHHhccCCCCCHHHHHHHHHHHHHhhCCceecHHH
Confidence 99999999999999999988643210 100000 00000 00000000001134677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 544 LQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 544 L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
|++||.+|++|++++.++...+. ...+..+++++|++|||++|+++++|||.|+||||+|||+|||+++|++|+++++.
T Consensus 462 L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 541 (570)
T PRK05675 462 MQKGIAQLADLRERIANVKINDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDDENWLCHTLY 541 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCCCCCChhhhcceEEE
Confidence 99999999999988876532211 12234578899999999999999999999999999999999999988777777653
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-87 Score=734.41 Aligned_cols=496 Identities=43% Similarity=0.665 Sum_probs=427.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
++||||||+|.|||+||+.|++ | +|+||||....+|+|.+++||++....+.|+++.|+.|+++.+.+++|+++++.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 6899999999999999999987 8 9999999999899999999999888878899999999999999999999999999
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeecc-CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~-~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
++++++.++||.++|++|+++.+|.+.+..+++|+.+|+++.. +.+|..+...|.+.+. .||++++++.+++|+.+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~- 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE- 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec-
Confidence 9999999999999999999888888777788999999998874 7789999999998875 39999999999999976
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 319 (641)
++ +|.|+.+.+ .+|+...|+||.|||||||++.+|+.+++++.+||||+.||+++|+.+.+|||+||||+.+...+
T Consensus 159 ~g---~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~~q~~pt~~~~~~ 234 (510)
T PRK08071 159 NG---RCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANG 234 (510)
T ss_pred CC---EEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcceeEeeeEecCCC
Confidence 56 899999877 46777789999999999999999999999999999999999999999999999999998775432
Q ss_pred CCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHh
Q 006532 320 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILS 399 (641)
Q Consensus 320 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~ 399 (641)
.+ ..++++.++++|++++|.+|+|||++|++..++.|||++++++..++.++ ..+|+|+++.+ .+.+
T Consensus 235 ~~---------~~li~e~~rg~g~~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~~~~--~~v~ld~~~~~--~~~~ 301 (510)
T PRK08071 235 RC---------VGLVSEAVRGEGAVLINEDGRRFMMGIHPLADLAPRDVVARAIHEELLSG--EKVYLNISSIQ--NFEE 301 (510)
T ss_pred cc---------ceeechhhcCCceEEECCCCCCCccccCccccCCCHHHHHHHHHHHHHcC--CeEEEeccchH--HHHH
Confidence 11 23678888999999999999999999999889999999999999998764 47999998865 4677
Q ss_pred hChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHH
Q 006532 400 HFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 479 (641)
Q Consensus 400 ~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag 479 (641)
++|++.+++++.|+|+.++++||.|..|+++|||+||.+++|+|||||||||++|+|+||+||++||||++|+|||++||
T Consensus 302 ~~~~i~~~~~~~gid~~~~~i~v~p~~h~~~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag 381 (510)
T PRK08071 302 RFPTISALCEKNGVDIETKRIPVVPGAHFLMGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAA 381 (510)
T ss_pred HhhHHHHHHHHhCcCCCCCceeEehhheEEcCCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHH
Q 006532 480 QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE 559 (641)
Q Consensus 480 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~ 559 (641)
++|+.+..... +.... +.. . ......+...+++||++||+++||+|++++|++|+.+|++|+.+..
T Consensus 382 ~~aa~~~~~~~-~~~~~--------~~~--~---~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~ 447 (510)
T PRK08071 382 EHILTKATKPR-LNPFA--------EKE--K---KFIVLNHLPTKEEIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNM 447 (510)
T ss_pred HHHHhhccCCc-ccchh--------hhh--h---hhccccchHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhh
Confidence 99887642210 00000 000 0 0000111233579999999999999999999999999999963321
Q ss_pred HhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeee
Q 006532 560 TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 621 (641)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~ 621 (641)
... . .......+|++|||++|+++++|||+|+||||+|||+|||++ + |.++++
T Consensus 448 --~~~--~--~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~--~-~~~~~~ 500 (510)
T PRK08071 448 --ILD--H--DALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHR--N-WRGKEI 500 (510)
T ss_pred --hcc--c--cccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCcc--c-cCceEE
Confidence 100 0 111246789999999999999999999999999999999998 3 555554
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-86 Score=727.13 Aligned_cols=487 Identities=47% Similarity=0.718 Sum_probs=427.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
++||||||+|+|||+||+.|++.|.|+||||....+|+|.+++||+++...+.|+++.|+.|+++.+.+++|+++++.++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 81 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV 81 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCCEEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 58999999999999999999998899999999888899999999999888888999999999999999999999999999
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+++++.++||+++|++|.+..+|.+.+..+++|+++|+++..+.+|..+...|.+.+++..||++++++.|++|+.+ ++
T Consensus 82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g 160 (488)
T TIGR00551 82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE-TG 160 (488)
T ss_pred HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CC
Confidence 99999999999999999988888888888899999999998888999999999999987469999999999999986 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 321 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~ 321 (641)
+|.|+.+.+. ++...|+|+.||+||||++++|..++++..++|||+.||+++|+.+.+|||+||||+.+...+.
T Consensus 161 ---~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~~q~~pt~~~~~~~- 234 (488)
T TIGR00551 161 ---RVVGVWVWNR--ETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTALYKPRA- 234 (488)
T ss_pred ---EEEEEEEEEC--CcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcceEEEeeEecCCCC-
Confidence 7999988763 4456799999999999999999999999999999999999999999999999999987754321
Q ss_pred CCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHhhC
Q 006532 322 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHF 401 (641)
Q Consensus 322 ~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~ 401 (641)
..+++++.++++|++++|.+|+||+++|++..++.|||++++++.+++.+++..++|+|.++.+ .+.+++
T Consensus 235 --------~~~l~~~~~~g~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~~~~~v~ld~~~~~--~~~~~~ 304 (488)
T TIGR00551 235 --------RYFLITEAVRGEGAYLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGADCVFLDASGIE--AFRQRF 304 (488)
T ss_pred --------cceeeehhhcCCceEEECCCCCChhhccCcccccCchHHHHHHHHHHHHhcCCCeEEecCcchH--HHHHHc
Confidence 1357888889999999999999999999998999999999999999998765457999999865 477899
Q ss_pred hhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH
Q 006532 402 PNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 481 (641)
Q Consensus 402 ~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~ 481 (641)
|++.+++.+.|+|+.++|++|.|..|+++|||+||.++||+|||||||||++|+|+||+||++||||++|+|||++||++
T Consensus 305 ~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~ 384 (488)
T TIGR00551 305 PTIYAKCLGAGIDPTREPIPVVPAAHYTCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAED 384 (488)
T ss_pred chHHHHHHHhCCCCCCCceecccccEEecCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHh
Q 006532 482 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 561 (641)
Q Consensus 482 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~ 561 (641)
|+++....... ............ .. .. ...+.+++++||++||+++||+|++++|++|+++|++|++++..
T Consensus 385 aa~~~~~~~~~-~~~~~~~~~~~~---~~---~~-~~~~~~~~~~l~~~m~~~~gi~r~~~~l~~al~~~~~l~~~~~~- 455 (488)
T TIGR00551 385 ISRRPPYASDI-STSPPWDEPRSE---NP---DD-RVVLQHNMSELRSFMWDYAGIVRLTKSLERALRRLVMLQQEIDE- 455 (488)
T ss_pred HHhhccccCcc-chhhhhhhhhhc---cc---cc-ccchHHHHHHHHHHHhheeeEEEcHHHHHHHHHHHHHHHHHHHH-
Confidence 98875321110 000000000000 00 00 12356778899999999999999999999999999999876532
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCC
Q 006532 562 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609 (641)
Q Consensus 562 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P 609 (641)
++++||+++|+++++|||.|+||||+|||+|||
T Consensus 456 ---------------~~~~~~~~~a~~~~~~al~R~ESrG~H~R~D~p 488 (488)
T TIGR00551 456 ---------------YELRNLVQVAKLITRSALMREESRGAHFRLDYP 488 (488)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhCCCCccceecCCCC
Confidence 247999999999999999999999999999998
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-85 Score=727.12 Aligned_cols=502 Identities=38% Similarity=0.568 Sum_probs=432.0
Q ss_pred HHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCCHHHHHHHHHHhccCCCCHHHHHHHHHHhHHHHHHHHHcCCc
Q 006532 101 VAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGAS 177 (641)
Q Consensus 101 aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~ 177 (641)
|++.| +|+||||....+|+|.+++|||++... ++|+++.|+.|+++.+.+++|+++++.+++++++.++||+++|++
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~ 80 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP 80 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45778 999999999999999999999988776 579999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEE
Q 006532 178 FDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249 (641)
Q Consensus 178 ~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv 249 (641)
|++.++|.+....+++|+ ++|+++..+.+|..++..|.+.+.+ .||+|++++.+++|+++ +| +|+||
T Consensus 81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~-~g---~v~Ga 155 (565)
T TIGR01816 81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLK-ADTSFFNEYFALDLLME-DG---ECRGV 155 (565)
T ss_pred cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHh-CCCEEEeccEEEEEEee-CC---EEEEE
Confidence 998888877766677774 4789998888999999999999987 59999999999999986 67 89999
Q ss_pred EEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCC
Q 006532 250 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRE 329 (641)
Q Consensus 250 ~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~ 329 (641)
++.+..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+...
T Consensus 156 ~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~----------- 224 (565)
T TIGR01816 156 IAYCLETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGA----------- 224 (565)
T ss_pred EEEEcCCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcceEEccCcccCC-----------
Confidence 998877899889999999999999999999999999999999999999999999999999999876421
Q ss_pred ccceeeccccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----CeEEEeCCCCChhHHHhhChh
Q 006532 330 NSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPTEKILSHFPN 403 (641)
Q Consensus 330 ~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~-----~~v~lD~~~~~~~~~~~~~~~ 403 (641)
.+++++.++++|+++||.+|+||+++|++. .++.+|++++++|..++.++++ .++|+|+++.+.+.+.+++|.
T Consensus 225 -~~l~~e~~r~~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~ 303 (565)
T TIGR01816 225 -GCLITEGCRGEGGILINANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEGRLPG 303 (565)
T ss_pred -ceEEeccccCCceEEECCCCCCCccccCccccccCchhHHHHHHHHHHHhcCCCCCCCCeEEEEccCCCHHHHHHHhhh
Confidence 457788899999999999999999999876 5899999999999999876542 479999999999999999999
Q ss_pred HHHHHHH-cCCCCCCCCeeEeeeeccccCceEeCCCCC---------cccCCeeecccccCCCCCCCCccchhhhHHHHH
Q 006532 404 IAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE---------TNVRGLYVAGEVACTGLHGANRLASNSLLEALV 473 (641)
Q Consensus 404 ~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~---------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v 473 (641)
+.+.+.. .|+|+.++|+++.|.+|+++|||.||.++| |+||||||||||+|+|+||+||++||+|++|+|
T Consensus 304 ~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~v 383 (565)
T TIGR01816 304 ISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVV 383 (565)
T ss_pred HHHHHHHHcCCCCCCCcEEeeeeeeeecCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHH
Confidence 9998887 699999999999999999999999999998 689999999999988999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccc--cccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 006532 474 FARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551 (641)
Q Consensus 474 ~G~~Ag~~aa~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l 551 (641)
||++||++|+++++.... +..... ....... .......+....+.+++++||++||+++||+|++++|++|+.+|
T Consensus 384 fGr~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l 460 (565)
T TIGR01816 384 FGRAAGLSAAEYAKPGSDVKPMPPNA-GEESVMR--LDKLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKI 460 (565)
T ss_pred HHHHHHHHHHHhhcccccccccccch-hHHHHHH--HHHHhhccCCCCHHHHHHHHHHHhhCCeeEEECHHHHHHHHHHH
Confidence 999999999998653210 000000 0000000 00000000112467888999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006532 552 DELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 552 ~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 622 (641)
++|++++..+...+ ....++++++++|++|||++|+++++|||+|+||||+|||+|||++||++|+++++.
T Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 532 (565)
T TIGR01816 461 SALKERYKNVKINDKSKVWNTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDDENWLKHTLS 532 (565)
T ss_pred HHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCCccccccEEEE
Confidence 99998876643211 123357889999999999999999999999999999999999999998888887764
|
coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase. |
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-86 Score=722.29 Aligned_cols=535 Identities=39% Similarity=0.553 Sum_probs=467.4
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCC-----CCCHHHHHHHHHHhccCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-----SDSVESHMQDTIVAGAYLCD 153 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~-----~d~~~~~~~d~~~~g~~~~~ 153 (641)
..+|||||||||.|||+||+.+++.| +|+||||....+|+|..++||+++.... .|+++.|+.|+++.+++++|
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 45799999999999999999999999 9999999999999999999999988752 25899999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEE
Q 006532 154 DETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAI 233 (641)
Q Consensus 154 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~ 233 (641)
++.+..+++.+++.+.+|++||++|.+..+|.++.+++++++.+|.++..+.+|..++..|.+++.+..+++++++..++
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999985578999999999
Q ss_pred EEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccce
Q 006532 234 DLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 313 (641)
Q Consensus 234 ~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~ 313 (641)
+|++++++ .|.|++..+..+|+.+.++||+||+||||++.+|+.+++....||||+.|++++|+.+.||||+||||+
T Consensus 164 ~l~~~~~~---~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~~Q~hpt 240 (562)
T COG1053 164 DLLVDDGG---GVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHPT 240 (562)
T ss_pred hheecCCC---cEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCccccccc
Confidence 99988554 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccc--cc-ccccCchhHHHHHHHHHHHhcCC------Ce
Q 006532 314 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY--DE-RAELAPRDVVARSIDDQLKKRNE------KY 384 (641)
Q Consensus 314 ~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~--~~-~~~~~~r~~~~~~i~~~~~~~~~------~~ 384 (641)
.+... ..+++|+.|++||+++|.+|+|||+.| .+ ..++.|||++++++..++.++++ .+
T Consensus 241 ~~~~~------------g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~ 308 (562)
T COG1053 241 GLVGS------------GILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDY 308 (562)
T ss_pred eecCC------------ceEEeeecccCCCeEecCCcceeeccccccccccccCCcchHHHHHHHHHhcCCCcccCCCce
Confidence 98752 578999999999999999999999984 43 36899999999999999998764 47
Q ss_pred EEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCCeeEeeeeccccCceEeC-CCCCcccCCeeecccccCCCCCCCCc
Q 006532 385 VLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAG-LQGETNVRGLYVAGEVACTGLHGANR 462 (641)
Q Consensus 385 v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGI~vD-~~~~T~ipGLyAaGe~a~~g~~Ga~r 462 (641)
+++|++|++.+.+.+++|.+.+.+.. .|+|+.++|++|.|+.||+||||++| .++.|.||||||||||+|+..||+||
T Consensus 309 v~ldl~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGanr 388 (562)
T COG1053 309 VYLDLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANR 388 (562)
T ss_pred EEEEhhhcChHHHHhcCchHHHHHHhhcCCCcccceeEecccceeccCCEeecccccccCCCCeEECceecccccCCccc
Confidence 99999999888888999988777665 68999999999999999999999999 57789999999999999877789999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCccccccch-hhhhchHHHHHHHHHHHHhcCccccCH
Q 006532 463 LASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-NILRRTKEVRKELQSIMWRYVGIVRST 541 (641)
Q Consensus 463 l~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~m~~~~g~~R~~ 541 (641)
|++|||++++|||++||..+++|++......+...... ......+... ....++.+++++||++|+++++|+|++
T Consensus 389 lG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R~~ 464 (562)
T COG1053 389 LGGNSLLDLVVFGRIAGEAAAEYAKEKSGSPPASAVEA----ERERFDALLRRGGDENPAQIREELQEVMGDNVGIFRNE 464 (562)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhccCCCchhHHHH----HHHHHHHHHhccCCCCHHHHHHHHHHHhhCCceeccCH
Confidence 99999999999999999999999876543211100000 0000000000 112468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCee
Q 006532 542 TSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTI 620 (641)
Q Consensus 542 ~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~~ 620 (641)
+.|++++++|.+|++++.++...+ ....+.++.+++|+.|||.+|++++.+||.|+||||+|||+|||++||++|++++
T Consensus 465 ~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~rdD~~w~kht 544 (562)
T COG1053 465 EGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPERDDENWLKHT 544 (562)
T ss_pred HHHHHHHHHHHHHHHHhhcceecchhHhhhhhhHHHHhHHHHHHHHHHHHHHHhcCcccccccCCccCCccchHHHHHHH
Confidence 999999999999999998733221 1223447788999999999999999999999999999999999999999999987
Q ss_pred ec-CCCccccccccc
Q 006532 621 IL-PSLVNCTWSSRQ 634 (641)
Q Consensus 621 ~~-~~~~~~~~~~~~ 634 (641)
+. .+. ++.....|
T Consensus 545 ~~~~~~-~~~~~~~~ 558 (562)
T COG1053 545 LASYDK-KPRLEYEP 558 (562)
T ss_pred HHhcCC-ccceeeee
Confidence 74 333 44443333
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=660.56 Aligned_cols=456 Identities=35% Similarity=0.528 Sum_probs=392.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
.||||||+|+|||+||+.|++.| +|+||||.. ..+++.+++||++....+.|+++.|+.|+++.+.++++++.++.++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~-~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI-KKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC-CCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 69999999999999999999999 999999986 4567788899998877778999999999999999999999999999
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+++++.++||+++|++|+.. ...++|+++|..+..+.+|..+...|.+.+++ .|++++++ .+++|+.+ ++
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~-------~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~-~v~~l~~~-~g 150 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGN-------ELEGGHSFPRVFTIKNETGKHIIKILYKHARE-LGVNFIRG-FAEELAIK-NG 150 (466)
T ss_pred HHHHHHHHHHHHcCCCcccC-------CCcCCccCCeEEECCCCchHHHHHHHHHHHHh-cCCEEEEe-EeEEEEee-CC
Confidence 99999999999999999753 13467888998888888899999999999987 59999976 79999875 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 321 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~ 321 (641)
+|.|+.+ +++ .++|+.|||||||++++|..+++++.++|||+.+++++||.+.+|||+||||+.+....
T Consensus 151 ---~v~Gv~~----~g~--~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me~~q~~p~~~~~~~-- 219 (466)
T PRK08401 151 ---KAYGVFL----DGE--LLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIGKR-- 219 (466)
T ss_pred ---EEEEEEE----CCE--EEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCceeeEEecccccCCC--
Confidence 7888875 243 58999999999999999998899999999999999999999999999999998764311
Q ss_pred CCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHhhC
Q 006532 322 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHF 401 (641)
Q Consensus 322 ~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~ 401 (641)
..+++++.++++|+++||.+|+||++ |+.+|+++++++..++.++ .++|+|.++++ .+.+++
T Consensus 220 --------~~~l~~e~~r~~g~ilvN~~G~RF~~------E~~~rd~v~~ai~~~~~~~--~~v~ld~~~~~--~~~~~~ 281 (466)
T PRK08401 220 --------GTYLISEAVRGAGAKLVTGDGERFVN------ELETRDIVARAIYRKMQEG--KGVFLDATGIE--DFKRRF 281 (466)
T ss_pred --------CCeEEeeecccCceEEECCCCCChhc------ccccHHHHHHHHHHHHhcC--CEEEEeCcCHH--HHHHHh
Confidence 14678888999999999999999996 5778999999999998764 47999998763 566789
Q ss_pred hhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHH
Q 006532 402 PNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 481 (641)
Q Consensus 402 ~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~ 481 (641)
|.+++.+.+.|+|+.++++++.|..||++|||+||.++||+|||||||||++|+|+||+|||+||||++++|||++||++
T Consensus 282 ~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~ 361 (466)
T PRK08401 282 PQIYAFLRKEGIDPSRDLIPVTPIAHYTIGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVART 361 (466)
T ss_pred HHHHHHHHHcCCCcCCcccccccceeecCCCEEECCCCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHh
Q 006532 482 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 561 (641)
Q Consensus 482 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~ 561 (641)
|++.... .... . ..+ ... ..+..+ ++||++||+++||+|++++|+++|.+|++|+++
T Consensus 362 aa~~~~~----~~~~---~--~~~-------~~~--~~~~~~-~~l~~~m~~~~gi~r~~~~l~~~~~~~~~l~~~---- 418 (466)
T PRK08401 362 ISRERPK----LREV---K--EPP-------YHG--YELGDV-DSIREILWNHAGIVRSEESLREGLKKLEGIEAD---- 418 (466)
T ss_pred HhhhCcC----cccc---c--hhh-------hhc--cccccH-HHHHHHHhccceEEECHHHHHHHHHHHHHHHhc----
Confidence 8764110 0000 0 000 000 012223 569999999999999999999999999988531
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCe
Q 006532 562 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPT 619 (641)
Q Consensus 562 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~d~~~~~~~ 619 (641)
.+|+++|+++++|||.|+||||+|||+|||++|++|.++.
T Consensus 419 ------------------~~~~~~a~~~~~~al~R~esrG~h~r~D~p~~~~~~~~~~ 458 (466)
T PRK08401 419 ------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRKEFERPS 458 (466)
T ss_pred ------------------cCHHHHHHHHHHHHHhcCCCccceecCCCCccChhhhccc
Confidence 2578899999999999999999999999999988776665
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-78 Score=664.29 Aligned_cols=515 Identities=21% Similarity=0.243 Sum_probs=389.5
Q ss_pred cEEEECccHHHHHHHHHHH----hcC-CeEEEEecCCCCCccccccC--ceeeccC---CCCCHHHHHHHHHHhccCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVA----KHG-TVAVITKAEPHESNTNYAQG--GVSAVLC---PSDSVESHMQDTIVAGAYLCD 153 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa----~~G-~V~llek~~~~~g~s~~a~g--gi~~~~~---~~d~~~~~~~d~~~~g~~~~~ 153 (641)
||||||||.|||+||+.|+ +.| +|+||||....++++ +++| +++.... ..|+++.++++++..+.+++|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 679 999999998765544 6777 4554443 258999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHcCCccccCC-CCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 154 DETVRVVCTEGPDRIRELIAIGASFDRGE-DGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 154 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~-~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
+++++.+++++++.++||.++|++|++.. +|.+. ..+... ....|..+.+.+...+.+ .++++++++.+
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~--~~g~~~-------~~~gG~~~~r~l~~~l~~-~~~~i~~~~~v 149 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYV--REGRWQ-------IMIHGESYKPIVAEAAKN-ALGDIFERIFI 149 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccc--cCCCcc-------cCcCchhHHHHHHHHHHh-CCCeEEcccEE
Confidence 99999999999999999999999998753 55322 221100 011245566666666665 47899999999
Q ss_pred EEEEecCC--CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCC---------CcccCccchhHHHHhcCCe
Q 006532 233 IDLLTTLD--GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT---------NPLVATGDGMAMAHRAQAV 301 (641)
Q Consensus 233 ~~l~~~~~--g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~---------~~~~~~Gdg~~~a~~aGa~ 301 (641)
++|+++++ | +|+||++.+..+|+.+.|.||+|||||||++++|..++ +++.+||||+.||+++||.
T Consensus 150 ~~Ll~d~~~~G---rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~aGA~ 226 (614)
T TIGR02061 150 VKLLLDKNTPN---RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQAGAE 226 (614)
T ss_pred EEEEecCCCCC---eEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHHcCCC
Confidence 99998643 5 89999998877888889999999999999999887432 3788999999999999999
Q ss_pred eeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccc-------cccC----chhHHH
Q 006532 302 ISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-------AELA----PRDVVA 370 (641)
Q Consensus 302 l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~-------~~~~----~r~~~~ 370 (641)
+.+||| ||||+.+..+..+ ....++++| ++++|.+|+|||.+|+|. ++++ |||+++
T Consensus 227 l~dme~-qf~pt~~~~~~~~------~~~~~l~~e------a~l~n~~Gerf~~~~~~~~~~~~~r~~~~~~~~~rd~va 293 (614)
T TIGR02061 227 MTQMEN-RFVPARFKDGYGP------VGAWFLLFK------AKATNGKGEEYCATNRAMLKPYEGRGYAKPHVIPTCLRN 293 (614)
T ss_pred ccCCcc-ceecceeccccCC------CCceEEEee------eEEECCCCCChhhccchhhhhcccccccccCCCcHHHHH
Confidence 999998 9999988643211 111457776 799999999999877653 2333 478999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCC---------------hhHHHhhChhHHHHHH---HcCCCCCCCCeeEeeeeccccC-
Q 006532 371 RSIDDQLKKRNEKYVLLDISHKP---------------TEKILSHFPNIAAECL---KYGLDITSQPIPVVPAAHYMCG- 431 (641)
Q Consensus 371 ~~i~~~~~~~~~~~v~lD~~~~~---------------~~~~~~~~~~~~~~~~---~~G~d~~~~~i~v~p~~~~~~G- 431 (641)
++|+.|+++++ ++||||+++.+ .+.+...+|.....+. ..|+||.++||||.|++||+||
T Consensus 294 rai~~e~~~g~-g~vyLD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~~~ipV~PaaHy~mGg 372 (614)
T TIGR02061 294 HMMLREMREGR-GPIYMDTKEALQDPFATDKKQQKHLEEEAWEDFLDMTVGQANLWAATNVDPEERGSEIMPTEPYLMGS 372 (614)
T ss_pred HHHHHHHHcCC-CCEEeeccccchhhhhhcccccccccHHHHHHhccccHHHHHHHHHcCCCCcCCCcccccccCeecCC
Confidence 99999999864 56999988544 4445556664444333 2599999999999999999999
Q ss_pred -----ceEeC-----------------CCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006532 432 -----GVRAG-----------------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 432 -----GI~vD-----------------~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
||+|| .+++|+||||||||||+|+|+| |++||||+++.++|..|++.+.....
T Consensus 373 ~~~~~Gi~vd~~~~~~~~~~~~~~~~~~~~~T~i~gLyA~Ge~~~~~~h---~l~~nsl~eg~~ag~~a~~~~~~~~~-- 447 (614)
T TIGR02061 373 HSGCCGIWVSGPEDWVPEEYKVRAAKVYNRMTTVEGLFTCGDGVGASPH---KFSSGSFTEGRIAAKAAVRWILDHKD-- 447 (614)
T ss_pred cccccceeecccccccccccccccccccCCccccCCEEeceecccCcch---hhHHhHHHHHHHHHHHHHHHHHhCCC--
Confidence 99998 9999999999999999988998 58999999866666665554322110
Q ss_pred ccccccc--cccc-ccccCCcc-c---c---c-cchhhhhchHHHHHHHHHHHHhcCccc-----cCHHHHHHHHHHHHH
Q 006532 490 SIDLSAS--NWWT-RTVVPKSL-G---C---N-VMHNILRRTKEVRKELQSIMWRYVGIV-----RSTTSLQTAEWRIDE 553 (641)
Q Consensus 490 ~~~~~~~--~~~~-~~~~~~~~-~---~---~-~~~~~~~~~~~~~~~l~~~m~~~~g~~-----R~~~~L~~al~~l~~ 553 (641)
..+.... .... +...+... . . . ........+.+++++||++||+|+||+ |++++|++||++|++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~Gi~~~~~~R~~~~L~~al~~l~~ 527 (614)
T TIGR02061 448 FKPEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDEYGGGVTTYYMTNEALLDTGLKLMAM 527 (614)
T ss_pred CCCCChhHHHHHHHHhhhhHHHHHhhhccccCCCcCccCCCHHHHHHHHHHHHHhhcCccccccccCHHHHHHHHHHHHH
Confidence 0100000 0000 00000000 0 0 0 000000135678899999999999999 999999999999999
Q ss_pred HHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCc--ccccccCCCCCccCCCCCeee-cC--CCccc
Q 006532 554 LEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTII-LP--SLVNC 628 (641)
Q Consensus 554 l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR--G~h~R~D~P~~d~~~~~~~~~-~~--~~~~~ 628 (641)
|++++..+. ..+.+++++++|++|||++|+++++|||+|+||| |+|||+|||++|+++|+++++ +. ++.+.
T Consensus 528 l~~~~~~~~----~~~~~~~~~a~el~n~l~~a~~i~~aal~R~ESR~~G~H~R~DyP~~~d~~w~~~~~~~~~~~~g~~ 603 (614)
T TIGR02061 528 LEEDLEKLA----ARDLHELLRAWELYHRLWTVEAHMQHILFRKETRWPGYYYRADFLGLDDENWKCFVNSKYDPATGET 603 (614)
T ss_pred HHHHHhccc----CCChHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCCccccCCCCCCCchhhhceEEEEEcCCCCce
Confidence 988776532 2345788999999999999999999999999999 999999999998877777765 32 22344
Q ss_pred ccccccc
Q 006532 629 TWSSRQL 635 (641)
Q Consensus 629 ~~~~~~~ 635 (641)
+..+.|+
T Consensus 604 ~~~~~~~ 610 (614)
T TIGR02061 604 TIEKKPY 610 (614)
T ss_pred EEEeecc
Confidence 4444443
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-77 Score=662.32 Aligned_cols=500 Identities=23% Similarity=0.294 Sum_probs=390.8
Q ss_pred cccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCcc-ccccCceeeccCC-CCCHHHHHHHHHHhccCCCCH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNT-NYAQGGVSAVLCP-SDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s-~~a~ggi~~~~~~-~d~~~~~~~d~~~~g~~~~~~ 154 (641)
+.++||||||||.|||+||+.|++. | +|+||||....++++ ..+.+|++....+ .|+++.|+.|+++.+.+++++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 4679999999999999999999987 6 999999998754433 3455666654433 589999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
++++.+++++++.++||+++|++|.+..+|.+.... .|...+. ...+.+|..+...|.+.+++ .||+|++++.+++
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~--~~~~~~~-~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~v~~ 162 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK--VHHMGSY-VLPMPEGHDIKKVLYRQLKR-ARVLITNRIMATR 162 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeec--ccccCcc-cccCCChHHHHHHHHHHHHH-CCCEEEcceEEEE
Confidence 999999999999999999999999887666543221 1111110 01234688899999999987 5999999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC------CCC-CCCcccCccchhHHHHhcCCeeecccc
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------YPS-TTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~~~-~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
|++++++ +|.||++.+..+|+...|+||.|||||||++++ |.. +.+++.+||||+.||+++||.+.+|||
T Consensus 163 Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~ 239 (554)
T PRK08275 163 LLTDADG---RVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLEC 239 (554)
T ss_pred EEEcCCC---eEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCceE
Confidence 9986456 899999887777887889999999999999986 322 335568999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEE
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLL 387 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~l 387 (641)
+||||+.....+ +. ..++++ +.|++++|.+|+|||++|++. ..++++|+.++++++ ++||+
T Consensus 240 ~q~~p~~~~~~~----~~-----~~~~~~---~~g~~lvn~~G~RF~~~~~~~------~~~~~ai~~e~~~g~-g~v~l 300 (554)
T PRK08275 240 FQINPLIKDYNG----PA-----CAYVTG---PLGGYTANAKGERFIECDYWS------GQMMWEFYQELQSGN-GPVFL 300 (554)
T ss_pred EEEeceeecCCC----Cc-----cceecc---ccCcEEeCCCCCccccccCCc------hHHHHHHHHHHHcCC-CcEEE
Confidence 999997653221 10 112221 468899999999999987653 358999999998765 57999
Q ss_pred eCCCCChhHHHhhC---------hhHHHHHHHcCCCCCCCCeeEeeeec-----cccCceEeCCCCCcccCCeeeccccc
Q 006532 388 DISHKPTEKILSHF---------PNIAAECLKYGLDITSQPIPVVPAAH-----YMCGGVRAGLQGETNVRGLYVAGEVA 453 (641)
Q Consensus 388 D~~~~~~~~~~~~~---------~~~~~~~~~~G~d~~~~~i~v~p~~~-----~~~GGI~vD~~~~T~ipGLyAaGe~a 453 (641)
|+++++.+.+. ++ |++...+...|+||.++|+||.|.+| |+||||+||.+++|+|||||||||++
T Consensus 301 d~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~g~D~~~~~i~v~p~~~~~~g~~~~Ggi~~d~~~~t~i~gl~a~Ge~~ 379 (554)
T PRK08275 301 KLDHLAEETIQ-TIETILHTNERPSRGRFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETTVPGLYAAGDMA 379 (554)
T ss_pred ECCCCCHHHHH-HHHhhhhhcccchHHHHHHHcCCCcccCcccccCCCceeecccccCcEEECCCCccCCCCEEECcccC
Confidence 99999876543 23 33344556789999999999999877 45679999999999999999999987
Q ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccccc-ccccccccccccCCccccccchhhhhchHHHHHHHHHHHH
Q 006532 454 CTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSID-LSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMW 532 (641)
Q Consensus 454 ~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 532 (641)
|++ +|++.+|++||++||++|++|++..... .+.. ...... ...... ........+.+++++||++||
T Consensus 380 ~~~--------~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~~lq~~m~ 448 (554)
T PRK08275 380 SVP--------HNYMLGAFTYGWFAGENAAEYVAGRDLPEVDAA-QVEAER-ARVLAP-LHREDGLPPAQVEYKLRRLVN 448 (554)
T ss_pred Cch--------hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHH-HHHHHH-HHHhcc-ccccCCCCHHHHHHHHHHHHH
Confidence 433 5899999999999999999987543211 1000 000000 000000 000111357789999999999
Q ss_pred hcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc--ccccCCCC
Q 006532 533 RYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL--HYMVDFPH 610 (641)
Q Consensus 533 ~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~--h~R~D~P~ 610 (641)
+|+||+|++++|++||++|++|++++.++. ..+.+++++++|++|||++|+++++|||+|+||||+ |||+|||+
T Consensus 449 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~----~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG~~~H~R~DyP~ 524 (554)
T PRK08275 449 DYLQPPKVTRKMEIGLQRFAEIREDLERIK----ARDPHELMRALEVSSIRDCAEMAARASLFRTESRWGLYHYRVDFPE 524 (554)
T ss_pred hhcCccccHHHHHHHHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCC
Confidence 999999999999999999999998876532 334578899999999999999999999999999999 99999999
Q ss_pred CccCCCCCeee
Q 006532 611 VEENKRLPTII 621 (641)
Q Consensus 611 ~d~~~~~~~~~ 621 (641)
+|+++|+++++
T Consensus 525 ~~~~~~~~~~~ 535 (554)
T PRK08275 525 RNDAEWFCHTH 535 (554)
T ss_pred CChhhhceeeE
Confidence 99987777655
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-76 Score=657.35 Aligned_cols=517 Identities=20% Similarity=0.216 Sum_probs=399.4
Q ss_pred cccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccC--ceeeccCCCCCHHHHHHHHHHhccCCCCH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQG--GVSAVLCPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~g--gi~~~~~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
+.++||||||||+|||+||+.|++. | +|+||||....++++ +++| +++...+..|+++.|+.++++.+.+++++
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~ 87 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRE 87 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCH
Confidence 4579999999999999999999998 9 999999998755443 4444 35555566789999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
++++.+++++++.++||+++|++|.+..+|.+.. .+ + .+. ...|..+...|.+.+++..||++++++.|++
T Consensus 88 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~--~g-~--~~~----~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~ 158 (608)
T PRK06854 88 DLVYDIARHVDSVVHLFEEWGLPIWKDENGKYVR--RG-R--WQI----MINGESYKPIVAEAAKKALGDNVLNRVFITD 158 (608)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCeeeecCCCCccc--cC-C--ccC----CCChHHHHHHHHHHHHhcCCCEEEeCCEEEE
Confidence 9999999999999999999999998776665432 11 1 111 1357778888888887754599999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCC---------CcccCccchhHHHHhcCCeeecc
Q 006532 235 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT---------NPLVATGDGMAMAHRAQAVISNM 305 (641)
Q Consensus 235 l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~---------~~~~~~Gdg~~~a~~aGa~l~~~ 305 (641)
|+++ ++ +|+||++.+..+++...|+|+.|||||||++.+|..++ +++.+||||+.||+++||.+.||
T Consensus 159 Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~m 234 (608)
T PRK06854 159 LLVD-DN---RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTF 234 (608)
T ss_pred EEEe-CC---EEEEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCC
Confidence 9976 55 89999887767787778999999999999998876533 36789999999999999999999
Q ss_pred ccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccccc---------ccCchhHHHHHHHHH
Q 006532 306 EFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA---------ELAPRDVVARSIDDQ 376 (641)
Q Consensus 306 e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~---------~~~~r~~~~~~i~~~ 376 (641)
|| ||||+.+..... |. ..+ .+++|++++|.+|+|||++|+|.. +++|||+++++|+.+
T Consensus 235 e~-qf~p~~~~~~~~---~~-----~~~----~~~~ga~lvn~~GeRFm~~y~p~~~~~~~~~~~~~~~rd~varai~~e 301 (608)
T PRK06854 235 EN-RFIPLRFKDGYG---PV-----GAW----FLLFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEE 301 (608)
T ss_pred cc-eEeccccCCCCC---Cc-----ccc----eeecCceeeCCCCcccccCCchhhhccccccccCCCChhHHHHHHHHH
Confidence 99 999997643111 11 111 246799999999999999998742 467899999999999
Q ss_pred HHhcCCCeEEEeCCCCC------hhHHHhh---ChhHHHHHHHcCCCCCCCCeeEeeeeccccCc------eEeC-----
Q 006532 377 LKKRNEKYVLLDISHKP------TEKILSH---FPNIAAECLKYGLDITSQPIPVVPAAHYMCGG------VRAG----- 436 (641)
Q Consensus 377 ~~~~~~~~v~lD~~~~~------~~~~~~~---~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GG------I~vD----- 436 (641)
+++++ ++||||+++.+ .+.+.+. +|++...+...|+||.++||||.|++||+||| |.||
T Consensus 302 ~~~g~-g~v~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giD~~~~~ipV~P~~Hy~mGG~~~~~Gi~vd~~~~~ 380 (608)
T PRK06854 302 NKAGR-GPIYMDTEEALQDKHLESELWEDFLDMTPGQALLWAAQNIEPEEENSEIMGTEPYIVGSHSGASGYWVSGPEDW 380 (608)
T ss_pred HhcCC-CCeEEEcccccccchhHHHHHHHHhccCHHHHHHHHHcCCCcccCceeeeccCCeeecCCCCceEEEecCcccc
Confidence 98764 56999998875 2223333 36666666678999999999999999999997 8999
Q ss_pred --------CCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc---cccccc--ccc-ccc
Q 006532 437 --------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS---IDLSAS--NWW-TRT 502 (641)
Q Consensus 437 --------~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~---~~~~~~--~~~-~~~ 502 (641)
.+++|+||||||||||+|++.| +++++++. +|++||+.++++++... .+.+.. ... ...
T Consensus 381 ~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~---~l~~~s~~----~g~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (608)
T PRK06854 381 VPEEYKWGYNRMTTVEGLFAAGDVVGGSPH---KFSSGSFA----EGRIAAKAAVRYILDNKDEKPEIDDDQIEELKKEI 453 (608)
T ss_pred cccccccccccccCCCCEEEeeecCCCCcc---hhHHHHHH----HHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999865544 56666554 67788888877765421 111100 000 000
Q ss_pred ccCCc-cc-------cccchhhhhchHHHHHHHHHHHHhcCccc-----cCHHHHHHHHHHHHHHHHHHHHhhhccCccc
Q 006532 503 VVPKS-LG-------CNVMHNILRRTKEVRKELQSIMWRYVGIV-----RSTTSLQTAEWRIDELEAEWETYLFEHGWEQ 569 (641)
Q Consensus 503 ~~~~~-~~-------~~~~~~~~~~~~~~~~~l~~~m~~~~g~~-----R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~ 569 (641)
..+.. .. .........++.+++.+||++||+|+||+ |++++|++||++|++|++++.... ..+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~~~~~~R~~~~L~~al~~l~~l~~~~~~~~----~~~ 529 (608)
T PRK06854 454 YAPLERYEEFKDYSTDPDVNPNYISPEQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKLA----ARD 529 (608)
T ss_pred HhHHhhhhcccccccccccCCCCCCHHHHHHHHHHHHHHhCCCcchhhhhcHHHHHHHHHHHHHHHHHHHhcc----CCC
Confidence 00000 00 00000111246788899999999999998 999999999999999998876531 223
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcccCc--ccccccCCCCCccCCCCCeeec---CCCcccccccccc
Q 006532 570 TFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTIIL---PSLVNCTWSSRQL 635 (641)
Q Consensus 570 ~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR--G~h~R~D~P~~d~~~~~~~~~~---~~~~~~~~~~~~~ 635 (641)
.+++++++|++|||++|+++++|||+||||| |+|||+|||++|+++|++++++ .++.+.+.++.|.
T Consensus 530 ~~~~~~~~el~~~l~~a~~i~~aAl~R~ESR~~G~H~R~DyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (608)
T PRK06854 530 LHELMRCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADYPGKDDENWKCFVNSRYDPGTGEWTIRKLPY 600 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCcCCCCChhhhcEEEEEEEcCCCCcEEEEEecc
Confidence 5778899999999999999999999999999 9999999999998777777663 2556666665554
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-76 Score=688.06 Aligned_cols=498 Identities=24% Similarity=0.298 Sum_probs=389.7
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC-CCccccccCceeecc-CCCCCHHHHHHHHHHhccCCCCH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGGVSAVL-CPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~-~g~s~~a~ggi~~~~-~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
..+.++||||||||.|||+||+.|++.| +|+||||.... +|++....+|++... ...|+++.|+.|+++.+.+++++
T Consensus 9 ~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~ 88 (897)
T PRK13800 9 ALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQ 88 (897)
T ss_pred cceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCH
Confidence 3456799999999999999999999999 99999999863 334444455664332 33689999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccce-ee-ccCCcHHHHHHHHHHHHHcC---CCcEEEcc
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI-VH-AADMTGREIERALLEAVVSD---PNISVFEH 229 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~-~~-~~~~~g~~~~~~l~~~~~~~---~gv~i~~~ 229 (641)
+.++.+++++++.++||+++|++|+++.+|.+...... +. .+ ..+.+|..+...|.+.+.+. .+|+++++
T Consensus 89 ~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~-----~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~ 163 (897)
T PRK13800 89 RTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVH-----RSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENR 163 (897)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeec-----cCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEec
Confidence 99999999999999999999999998877765433211 11 11 13457888888888877653 37999999
Q ss_pred eEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC------C--CCCCCcccCccchhHHHHhcCCe
Q 006532 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y--PSTTNPLVATGDGMAMAHRAQAV 301 (641)
Q Consensus 230 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~--~~~~~~~~~~Gdg~~~a~~aGa~ 301 (641)
+.+++|+++ +| +|+|+++++..+|+.+.|+||+|||||||++++ | ..+++ +.+||||++||+++||.
T Consensus 164 ~~~~~Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~-~~~tGDG~amA~raGA~ 238 (897)
T PRK13800 164 LMPVRVLTE-GG---RAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYEN-PTNAGDGYSMAYHAGAE 238 (897)
T ss_pred eeeEEEEee-CC---EEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCC-CCcccHHHHHHHHcCCc
Confidence 999999986 66 899999998888999999999999999999987 3 22334 48999999999999999
Q ss_pred eeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccc-cccccccCchhHHHHHHHHHHHhc
Q 006532 302 ISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL-YDERAELAPRDVVARSIDDQLKKR 380 (641)
Q Consensus 302 l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~-~~~~~~~~~r~~~~~~i~~~~~~~ 380 (641)
+.||||+||||+.....| .++++.++++|++++|.+|+|||++ |.+ + .+...+..++.++
T Consensus 239 l~~me~vqfhPt~~~~~g------------~~~~~~~~~~G~~lvN~~GeRFm~~~~~~------~-~i~~~i~~ei~~g 299 (897)
T PRK13800 239 LSGIECFQINPLIKDYNG------------PACAYVANPFGGYQVNAQGERFVDSDYWS------G-QMMAEVKREIESA 299 (897)
T ss_pred ccCceeEEeeccccCCCC------------chhheeecccCcEEECCCCCccccCcccc------h-hHHHHHHHHHhcC
Confidence 999999999997664222 1233446678999999999999974 422 2 2344666777665
Q ss_pred CCCeEEEeCCCCChhHHHhhChhHHHH---------HHHcCCCCCCCCeeEee-----eeccccCceEeCCCCCcccCCe
Q 006532 381 NEKYVLLDISHKPTEKILSHFPNIAAE---------CLKYGLDITSQPIPVVP-----AAHYMCGGVRAGLQGETNVRGL 446 (641)
Q Consensus 381 ~~~~v~lD~~~~~~~~~~~~~~~~~~~---------~~~~G~d~~~~~i~v~p-----~~~~~~GGI~vD~~~~T~ipGL 446 (641)
+ ++||||++|++.+.+. +||.+.+. +...|+||.++++++.| ..|++||||+||.+++|+||||
T Consensus 300 ~-g~vyLD~~~l~~e~~~-~l~~~~~~~~~p~~~~~~~~~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GL 377 (897)
T PRK13800 300 R-GPIYLKVSHLPEETLS-ALESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGL 377 (897)
T ss_pred C-CCEEEECCCCCHHHHH-HHHHhhhhcccchHHHHHHhcCCCcccccceecccccccccCCCcceEEecCCCcccCCCe
Confidence 4 6799999999977665 67665543 34479999999999754 5577889999999999999999
Q ss_pred eecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCCccccccc-hhhhhchHHH
Q 006532 447 YVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVM-HNILRRTKEV 523 (641)
Q Consensus 447 yAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 523 (641)
||||||+|+ ++|++.+|+|||++||++|++|+.+... +.... ...... . ... ..+ ......+.++
T Consensus 378 fAaGE~a~~--------~~nsl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~-~~~~~~-~-~~~-~~~~~~~~~~~~~~ 445 (897)
T PRK13800 378 YAAGDLACV--------PHNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPAD-QLAEAH-E-LIY-RPLRHPDGPPQPQV 445 (897)
T ss_pred EechhccCc--------chhhhhhHHHhHHHHHHHHHHHHhccCCCCCCCHH-HHHHHH-H-HHh-chhhccCCCChHHH
Confidence 999999863 2589999999999999999998754211 01000 000000 0 000 000 0001234578
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc-
Q 006532 524 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL- 602 (641)
Q Consensus 524 ~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~- 602 (641)
+++||++||+|+||+|++++|++||++|++|++++..+. ..+++++++++|++|||++|+++++|||+|+||||+
T Consensus 446 ~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~----~~~~~~l~~~~e~~n~l~~a~~i~~aAl~R~ESRG~~ 521 (897)
T PRK13800 446 EYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGMG----ARTPHELMRCAEVSFIRDCAEMAARSSLTRTESRWGL 521 (897)
T ss_pred HHHHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence 999999999999999999999999999999998876532 234688899999999999999999999999999999
Q ss_pred -ccccCCCCCccCCCCCeeec
Q 006532 603 -HYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 603 -h~R~D~P~~d~~~~~~~~~~ 622 (641)
|||+|||++||++|++++++
T Consensus 522 ~H~R~DyP~~~d~~w~~~~~~ 542 (897)
T PRK13800 522 YHDRADLPERDDASWGYHLNL 542 (897)
T ss_pred ccccCCCCCCChHhhhhheee
Confidence 99999999999888777654
|
|
| >KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-76 Score=603.76 Aligned_cols=538 Identities=38% Similarity=0.559 Sum_probs=465.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCC--CCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~--~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
..||-+|||+|.||+.+|+.+++.| +++++.|..+..+.+..++||+++.+.+ .|+++.|+.|+++.+.++++++.+
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i 133 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAI 133 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhh
Confidence 4599999999999999999999999 9999999999899999999999998876 489999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcc--------ccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcc
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFEH 229 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~ 229 (641)
..+..+.+.++-.++.+|.+|.+.++|++++..+++++ ..|+++..+.+|..+...|+.+..+. +..++-.
T Consensus 134 ~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~-~~~~f~~ 212 (642)
T KOG2403|consen 134 HYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRH-NTSFFVE 212 (642)
T ss_pred hHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhcc-chhhHHH
Confidence 99999999999999999999999999999999998887 67888899999999999999988875 7777777
Q ss_pred eEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeecccccc
Q 006532 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309 (641)
Q Consensus 230 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q 309 (641)
...++++... + .+.|+++.+..++....++++.+|+||||.++.|...+++...||||.+|+.++|+.+.+|||+|
T Consensus 213 yfa~dll~~~-g---~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efvq 288 (642)
T KOG2403|consen 213 YFALDLLMSQ-G---ECVGVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFVQ 288 (642)
T ss_pred HHHHHHHHhc-c---CceEEEEEEeecccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcccceee
Confidence 7778888764 5 57889888888999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcccccccccc-ccCchhHHHHHHHHHHHhcC-----CC
Q 006532 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKKRN-----EK 383 (641)
Q Consensus 310 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~-~~~~r~~~~~~i~~~~~~~~-----~~ 383 (641)
|||+.+.+.| .+++|..+++||+++|..|+|||..|.+.. ++++||++++++..++.+++ .+
T Consensus 289 fhpt~i~g~G------------cliteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd 356 (642)
T KOG2403|consen 289 FHPTGIYGAG------------CLITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKD 356 (642)
T ss_pred eeeecccccc------------eeeeecccccccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCC
Confidence 9999987653 578999999999999999999999999875 89999999999999988743 36
Q ss_pred eEEEeCCCCChhHHHhhChhHHH-HHHHcCCCCCCCCeeEeeeeccccCceEeCCCC----------CcccCCeeecccc
Q 006532 384 YVLLDISHKPTEKILSHFPNIAA-ECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQG----------ETNVRGLYVAGEV 452 (641)
Q Consensus 384 ~v~lD~~~~~~~~~~~~~~~~~~-~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~----------~T~ipGLyAaGe~ 452 (641)
.+|+++.+.+++.++.++|.+.+ .+...|+|.+++|+||.|..||.||||.++.++ .+.|||||||||+
T Consensus 357 ~~~l~l~h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~d~vvpGL~a~GEa 436 (642)
T KOG2403|consen 357 HVYLQLSHLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQDQVVPGLYACGEA 436 (642)
T ss_pred ccchhhccCChhhhcccCCCcchhhhhHhhcCccccccccCCCcccccCccccCCccceeeeccccccccccceeehhHH
Confidence 79999999999999999998866 456679999999999999999999999988877 4689999999999
Q ss_pred cCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc-ccccccccccccccCCccccccchhhhhchHHHHHHHHHHH
Q 006532 453 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIM 531 (641)
Q Consensus 453 a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m 531 (641)
+|.++||+||||.|||++.+|||+..|.+++...+... .++-....+.+.... ...-+..+......++|.+||+.|
T Consensus 437 ac~svHGANRLgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~~~g~~sv~~--ld~lr~~~gsi~TselRl~MQksM 514 (642)
T KOG2403|consen 437 ACASVHGANRLGANSLLDLVVFGRACALSIAEELRPGDKVPPLASNAGEESVAN--LDKLRFADGSIRTSELRLEMQKTM 514 (642)
T ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccchHHH--HHhhhcccCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999887653221 100000000000000 000000111245789999999999
Q ss_pred HhcCccccCHHHHHHHHHHHHHHHHHHHHhh-hccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCC
Q 006532 532 WRYVGIVRSTTSLQTAEWRIDELEAEWETYL-FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPH 610 (641)
Q Consensus 532 ~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~ 610 (641)
|++++|+|....|+++..+|.+|..+++.+. .+.+...+.++.+.+||+||+.+|...+.+|..||||||+|+|+|||.
T Consensus 515 qnhaaVFR~g~~LqEG~~kIskl~~~~k~lktfDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkESRGAHAReDy~~ 594 (642)
T KOG2403|consen 515 QKHAAVFRVGSVLQEGCRKISKLYGDFKDLKTFDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKESRGAHAREDFPV 594 (642)
T ss_pred hhcceEEEechHHHHHHHHHHHHHhHHhhhccccccceechhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccccc
Confidence 9999999999999999999999999999876 555633478899999999999999999999999999999999999999
Q ss_pred CccCCCCCeee--cC-CCcccccccccccc
Q 006532 611 VEENKRLPTII--LP-SLVNCTWSSRQLHK 637 (641)
Q Consensus 611 ~d~~~~~~~~~--~~-~~~~~~~~~~~~~~ 637 (641)
++|++|+++++ ++ +..+++|.-+|++.
T Consensus 595 R~DehWrKHTlsy~~~~tg~Vtl~YRpVid 624 (642)
T KOG2403|consen 595 RIDEHWRKHTLSYWDVGTGKVTLEYRPVID 624 (642)
T ss_pred chhhhhccceeeeecCCCceEEEEEeeccc
Confidence 99996666554 33 55579999988764
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=552.88 Aligned_cols=428 Identities=39% Similarity=0.662 Sum_probs=364.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.++||||||+|.|||+||+.|+ .| +|+||||....+|+|.+++||++... ..++++.++.|+++.+.+.+++++++.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~-~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR-NKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC-CCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4689999999999999999985 68 99999999999999999999998554 467899999999999999999999999
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
+++++++.++||+++|++|....+ .+.+..+++|+..|+++..+.+|..++..|.+.++++.||+|++++.+++|+.+
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~-~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~- 158 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEK-ELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN- 158 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCC-ceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec-
Confidence 999999999999999999987643 344456788999999998888999999999988876569999999999999976
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 319 (641)
++ +|.||++.+ +++.+.|+||.|||||||++++|..++++..++|||+.|++++|+.+.+|+|+|+||+.+...+
T Consensus 159 ~~---~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~~~~~~~ 233 (433)
T PRK06175 159 DN---TCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEET 233 (433)
T ss_pred CC---EEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEeceEeccCC
Confidence 55 799988754 4555679999999999999999998889999999999999999999999999999999776422
Q ss_pred CCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChhHHHh
Q 006532 320 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILS 399 (641)
Q Consensus 320 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~ 399 (641)
.. ...+++++.++++|+++||.+|+||++ |+.||+++++++.+++.+.+..++|+|.++.+.+.+..
T Consensus 234 ~~-------~~~~l~~~~~~~~g~ilVN~~G~RF~~------E~~~~~~~~~ai~~~~~~~~~~~v~~D~~~~~~~~~~~ 300 (433)
T PRK06175 234 IE-------GKKFLISESVRGEGGKLLNSKGERFVD------ELLPRDVVTKAILEEMKKTGSNYVYLDITFLDKDFLKN 300 (433)
T ss_pred CC-------CcceEeehhhcCCceEEECCCCCChhh------ccccHHHHHHHHHHHHHhcCCCeEEEecccCcHHHHHH
Confidence 10 114778888899999999999999997 56789999999999987765568999999999888888
Q ss_pred hChhHHHHHHHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHH
Q 006532 400 HFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 479 (641)
Q Consensus 400 ~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag 479 (641)
++|+++..+.+.|+|+.++++++.|+.||++|||+||.++||+|||||||||++|+|+||+||++||||++|+|||++||
T Consensus 301 ~~~~~yn~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag 380 (433)
T PRK06175 301 RFPTIYEECLKRGIDITKDAIPVSPAQHYFMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGA 380 (433)
T ss_pred HHHHHHHHHHHhCcCCCCCcEEEEcceeeecCCEEECCCccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccCCccccccchhhhhchHHHHHHHHHHHHhcCccccCHHHHHHHHH
Q 006532 480 QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEW 549 (641)
Q Consensus 480 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~R~~~~L~~al~ 549 (641)
++|+..+...... . ...+ ........+.++++++|+.. |.|..+.|++++.
T Consensus 381 ~~a~~~~~~~~~~-------~-~~~~---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 431 (433)
T PRK06175 381 EKINSEIDNIKLN-------I-TKVY---------TLKHDVEYYSLLNKKIIIKE--IEKLRGDLKDELV 431 (433)
T ss_pred HHHHHhhhccccc-------c-cccc---------ccccchhHHHHHHHHHHHHH--HHhhHHHHHHHhh
Confidence 9987644221100 0 0000 00012334456677787776 8888888877664
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=389.36 Aligned_cols=373 Identities=31% Similarity=0.421 Sum_probs=295.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhccCCCCHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
.|+|||+|.|||+|+..+-..| .|+|+||....+|+|..+..||+... ...|+|+.++.|++..++....|+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 6999999999999999999998 99999999999999999999998654 347999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHH-cCCccccCCCCCcccccCCCccccceeecc--CCcHHHHHHHHHHHHHcC-----CCcEEE
Q 006532 156 TVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAA--DMTGREIERALLEAVVSD-----PNISVF 227 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~--~~~g~~~~~~l~~~~~~~-----~gv~i~ 227 (641)
+++.++.++..+++||.. .+++++ .+...|||+.+|..... ...|.+++.+|..++++. .-++|.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld-------~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~ 163 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLD-------LLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKIL 163 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchH-------HHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhh
Confidence 999999999999999985 677665 34567899999976532 346788888888776652 258899
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC-------C------CCCCCcccCccchhHH
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------Y------PSTTNPLVATGDGMAM 294 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~------~~~~~~~~~~Gdg~~~ 294 (641)
.++.|++|+.+ +| +|.||+..|. +|+...+.++.||+|||||+.. | ..++|-...||||+.|
T Consensus 164 ~nskvv~il~n-~g---kVsgVeymd~-sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~ 238 (477)
T KOG2404|consen 164 LNSKVVDILRN-NG---KVSGVEYMDA-SGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKM 238 (477)
T ss_pred hcceeeeeecC-CC---eEEEEEEEcC-CCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHH
Confidence 99999999954 67 8999999874 6788889999999999999851 2 1577888999999999
Q ss_pred HHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHH
Q 006532 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 374 (641)
Q Consensus 295 a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~ 374 (641)
....|+.++||+.+|.||+.+.++.++..-+ .||..|++||.|++++|..|+||.+ |+..||.+.-.|.
T Consensus 239 l~klga~liDmd~vqvhptgfidpndr~~~w-----KfLAAEalRG~GaiLl~s~GrRF~n------ELg~RDyvTgei~ 307 (477)
T KOG2404|consen 239 LMKLGASLIDMDQVQVHPTGFIDPNDRTALW-----KFLAAEALRGLGAILLNSTGRRFGN------ELGTRDYVTGEIQ 307 (477)
T ss_pred HHHhCccccccceeEecccCccCCCCchhHH-----HHHHHHHhccCceEEEeccchhhhc------ccccchhhhHhHH
Confidence 9999999999999999999998765432211 5788999999999999999999998 6778888887776
Q ss_pred HHHHhcCCCeEEEeCCCCChhHH------------HhhChhHHHHHHHcCCC---------------------CC-----
Q 006532 375 DQLKKRNEKYVLLDISHKPTEKI------------LSHFPNIAAECLKYGLD---------------------IT----- 416 (641)
Q Consensus 375 ~~~~~~~~~~v~lD~~~~~~~~~------------~~~~~~~~~~~~~~G~d---------------------~~----- 416 (641)
+-..-.....+++=+.....+.+ .+++ ...+++...+++ |.
T Consensus 308 kl~~P~ednrallVmnea~~e~~~n~inFY~~K~l~kK~-~~~el~s~ln~t~sel~ttl~eY~~~~~g~~~D~fgrk~f 386 (477)
T KOG2404|consen 308 KLKCPIEDNRALLVMNEANYEAFGNNINFYMFKKLFKKY-ESAELASALNITESELKTTLEEYSKSFTGKSEDPFGRKVF 386 (477)
T ss_pred hhcCCcccceeEEEecHhHHHHHhhhhhhHhHHHHHHHh-hHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCCCcCCCccc
Confidence 52111011234443332211111 1111 122333333322 11
Q ss_pred -------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006532 417 -------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480 (641)
Q Consensus 417 -------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 480 (641)
+++ -+|.|..||+|||++||+..| ..|.|||||||++ ||+||+|||+|+||.+|+||||.||+
T Consensus 387 ~~s~is~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~ng~vi~GlfAAGEvs-GGvHGaNRLgGsSLLeCVVFGr~Ag~ 465 (477)
T KOG2404|consen 387 PVSDISPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDKNGKVIVGLFAAGEVS-GGVHGANRLGGSSLLECVVFGRTAGK 465 (477)
T ss_pred cCCCCCccceeEEEEEeeeEEEeccceEechhhhhhccCCcEeeeeeEcceec-cccccccccCcccceeeeeecccchh
Confidence 112 268899999999999998877 3688999999998 89999999999999999999999987
Q ss_pred H
Q 006532 481 P 481 (641)
Q Consensus 481 ~ 481 (641)
.
T Consensus 466 ~ 466 (477)
T KOG2404|consen 466 A 466 (477)
T ss_pred h
Confidence 3
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-49 Score=431.47 Aligned_cols=375 Identities=30% Similarity=0.444 Sum_probs=292.8
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhccC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~ 150 (641)
++.++||||||+|+||++||+.|++.| +|+||||....+|++.++.|+++... +..++++.++.++++.+.+
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 137 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG 137 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCC
Confidence 446899999999999999999999999 99999999988888888888876543 2367889999999999999
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccC--CcHHHHHHHHHHHHHcCCCcEEEc
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFE 228 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g~~~~~~l~~~~~~~~gv~i~~ 228 (641)
..++++++.+++++.+.++||+++|++|... ...++++.+|..++.+ ..+..++..|.+.+++ .|+++++
T Consensus 138 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~-------~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~-~gv~i~~ 209 (506)
T PRK06481 138 TNDKALLRYFVDNSASAIDWLDSMGIKLDNL-------TITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQE-RKIPLFV 209 (506)
T ss_pred CCCHHHHHHHHhccHHHHHHHHHcCceEeec-------ccCCCCCCCceeccCCCCCChHHHHHHHHHHHHH-cCCeEEe
Confidence 9999999999999999999999999998642 1223444455444332 3467788999998887 5999999
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC------C------CCCCCcccCccchhHHHH
Q 006532 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y------PSTTNPLVATGDGMAMAH 296 (641)
Q Consensus 229 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~------~------~~~~~~~~~~Gdg~~~a~ 296 (641)
++.|++|+.+ ++ +|.|+.+.. .+++...|+|+.||+||||++.. | ..+.+++.++|||+.|++
T Consensus 210 ~t~v~~l~~~-~g---~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~ 284 (506)
T PRK06481 210 NADVTKITEK-DG---KVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIE 284 (506)
T ss_pred CCeeEEEEec-CC---EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCChHHHHHHH
Confidence 9999999875 56 899998754 34566689999999999999874 1 124567789999999999
Q ss_pred hcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHH
Q 006532 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 376 (641)
Q Consensus 297 ~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~ 376 (641)
++||.+.+|+++|+||+..... .+++.+.+++.++++||.+|+||+++ ..+++.+++++..+
T Consensus 285 ~aGA~~~~~~~~~~~p~~~~~~------------~~~~~~~~~~~~~i~Vn~~G~RF~nE------~~~~~~~~~~~~~~ 346 (506)
T PRK06481 285 KLGGTTVDMDQIQIHPTVQQSK------------SYLIGEAVRGEGAILVNQKGKRFGNE------LDTRDKVSAAINKL 346 (506)
T ss_pred HcCCCccCchhhhhCCCccCCC------------cceehhhccCCceEEECCCCCCCCCC------CccHHHHHHHHHhC
Confidence 9999999999999998754321 33445556678899999999999984 45667777766654
Q ss_pred HHhcCCCeEEEeCCCCC----hhHHH-----hhChhHHHHHHHcCCC--------------------------------C
Q 006532 377 LKKRNEKYVLLDISHKP----TEKIL-----SHFPNIAAECLKYGLD--------------------------------I 415 (641)
Q Consensus 377 ~~~~~~~~v~lD~~~~~----~~~~~-----~~~~~~~~~~~~~G~d--------------------------------~ 415 (641)
. ++..++++|....+ .+... .+.+++.+++++.|+| +
T Consensus 347 ~--~~~~~~i~D~~~~~~~~~~~~~~~~g~~~kadTleeLA~~~gid~~~L~~tv~~yN~~~~~g~D~~fgr~~~~~~~i 424 (506)
T PRK06481 347 P--EKYAYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKINVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDL 424 (506)
T ss_pred c--CCcEEEEECHHHHhhhhhhHHHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCC
Confidence 3 22346677754211 00000 1223444444333332 2
Q ss_pred CCCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 416 TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 416 ~~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.+.| +++.|..|+|+|||+||+++| ++|||||||||++ +|+||.||++|+++++|++|||+||++|++++
T Consensus 425 ~~~PfYai~~~p~~~~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~-gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 425 STGPYYAIKIAPGIHYTMGGVKINTNTEVLKKDGSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred cCCCEEEEEEecceeecccCeEECCCceEEcCCCCEeCCeeeceecc-ccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 2345 789999999999999999998 6999999999998 79999999999999999999999999999886
Q ss_pred h
Q 006532 487 K 487 (641)
Q Consensus 487 ~ 487 (641)
+
T Consensus 504 ~ 504 (506)
T PRK06481 504 K 504 (506)
T ss_pred h
Confidence 4
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=445.85 Aligned_cols=393 Identities=30% Similarity=0.427 Sum_probs=301.7
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC-------CCCCHHHHHHHHHHhc-c
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAG-A 149 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~-------~~d~~~~~~~d~~~~g-~ 149 (641)
.+.++||||||+|.||++||++|++.| +|+||||....+|++.+++|+++.... ..|+++.+..+++..+ .
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~ 485 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Confidence 456899999999999999999999999 999999999888998888888876542 3578888888887765 5
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCC-------cHHHHHHHHHHHHHcC-
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM-------TGREIERALLEAVVSD- 221 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~-------~g~~~~~~l~~~~~~~- 221 (641)
+.+++++++.+++++++.++||+++|++|... ...++++++|..+..+. .|..+...|.+.+++.
T Consensus 486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~-------~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVL-------SQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCCceee-------eccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999999642 23456677776654321 2566778887777642
Q ss_pred -CCcEEEcceEEEEEEecCC----C-CCceEEEEEEEec--CCCeEEEEEcCEEEEcCCCCCcCC----------C----
Q 006532 222 -PNISVFEHHFAIDLLTTLD----G-PDAVCHGVDTLNV--ETQEVVRFISKVTLLASGGAGHIY----------P---- 279 (641)
Q Consensus 222 -~gv~i~~~~~v~~l~~~~~----g-~~~~v~Gv~~~~~--~~g~~~~i~Ak~VVlAtGg~~~~~----------~---- 279 (641)
.||+|++++++++|+++++ | ...+|+||++.+. .+|+.+.|+||+||||||||+++. +
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~ 638 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSG 638 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHHhCccccC
Confidence 4999999999999998642 1 1127999999764 267788999999999999999753 1
Q ss_pred -CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccc
Q 006532 280 -STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 358 (641)
Q Consensus 280 -~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~ 358 (641)
.+++++.++|||+.||+++||.+.+|+++|+||+.+..+..+..+ ..++..+.+++.++++||.+|+||++
T Consensus 639 ~~~~~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~g~ilVN~~GkRF~n--- 710 (1167)
T PTZ00306 639 FPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNR-----TKYLGPEALRGSGGVLLNKNGERFVN--- 710 (1167)
T ss_pred CCCCCCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCc-----ccceeeehhcCCceEEECCCCCCccc---
Confidence 244667899999999999999999999999999865432211111 13445556677789999999999997
Q ss_pred cccccCchhHHHHHHHHHHHhc----CC--CeEEEeCCCCCh---h---------HHHhhChhHHHHHHHcCCCC-----
Q 006532 359 ERAELAPRDVVARSIDDQLKKR----NE--KYVLLDISHKPT---E---------KILSHFPNIAAECLKYGLDI----- 415 (641)
Q Consensus 359 ~~~~~~~r~~~~~~i~~~~~~~----~~--~~v~lD~~~~~~---~---------~~~~~~~~~~~~~~~~G~d~----- 415 (641)
|+.+++.+++++..+.... +. .++.+|...... . .+..+.+++.+++.+.|+|+
T Consensus 711 ---E~~~~~~~~~ai~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~g~~~kADTleELA~~~gid~~~L~a 787 (1167)
T PTZ00306 711 ---ELDLRSVVSQAIIAQGNEYPGSGGSKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVENLHR 787 (1167)
T ss_pred ---ccCcHHHHHHHHHhhcccccccccCceEEEEEchHHHhhhhhhhhhhhhhhcCeEEEeCCHHHHHHHhCCCHHHHHH
Confidence 4567788888888765421 11 233344321100 0 01123567777777776664
Q ss_pred ----------------------------CCCC---eeEeeeeccccCceEeCCCCC--------------cccCCeeecc
Q 006532 416 ----------------------------TSQP---IPVVPAAHYMCGGVRAGLQGE--------------TNVRGLYVAG 450 (641)
Q Consensus 416 ----------------------------~~~~---i~v~p~~~~~~GGI~vD~~~~--------------T~ipGLyAaG 450 (641)
.+.| +++.|..++|+||+.||.++| ++||||||||
T Consensus 788 TV~rYN~~~~~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~~~~~~~~~pIpGLYAAG 867 (1167)
T PTZ00306 788 TLETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAG 867 (1167)
T ss_pred HHHHHHHHHhcCCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCccccccCCceeCceEecc
Confidence 1233 478899999999999998766 3799999999
Q ss_pred cccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhccc
Q 006532 451 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS 490 (641)
Q Consensus 451 e~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~~ 490 (641)
|++ +|+||.+|++|+++++|++||++||++|+++++...
T Consensus 868 e~~-gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~ 906 (1167)
T PTZ00306 868 EVT-GGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred eec-cccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 998 799999999999999999999999999999886654
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=397.99 Aligned_cols=365 Identities=37% Similarity=0.538 Sum_probs=286.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC-------CCCCHHHHHHHHHHhccCCCCHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~-------~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
||||||+|+|||+||+.|+++| +|+||||....+|++.++.|++..... ..|+++.++.+++..+.+..+++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999 999999999888888888887776542 24779999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCcccc-ceee-ccCC------cHHHHHHHHHHHHHcCCCcEEE
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-RIVH-AADM------TGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~-r~~~-~~~~------~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
+++.+++++.+.++||+++|++|..+.++.+.....+.+... +.+. ..+. .+..+...|.+.+++. |++|+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-gv~i~ 159 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEA-GVDIR 159 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHT-TEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhc-Ceeee
Confidence 999999999999999999999999877776666666766666 5554 3343 7899999999999984 89999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc----------CCCCCCCcccCccchhHHHHh
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH----------IYPSTTNPLVATGDGMAMAHR 297 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~----------~~~~~~~~~~~~Gdg~~~a~~ 297 (641)
.++++++|+++ ++ +|+||++.+..+|+.+.|+|++|||||||+++ .+..+.+++.++|||+.|+++
T Consensus 160 ~~~~~~~Li~e-~g---~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~ma~~ 235 (417)
T PF00890_consen 160 FNTRVTDLITE-DG---RVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAMALR 235 (417)
T ss_dssp ESEEEEEEEEE-TT---EEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHHHHH
T ss_pred ccceeeeEEEe-CC---ceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhhhhc
Confidence 99999999997 66 89999999888899999999999999999997 445667788999999999999
Q ss_pred cCCeeec--cccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHH-
Q 006532 298 AQAVISN--MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID- 374 (641)
Q Consensus 298 aGa~l~~--~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~- 374 (641)
+||.+.+ |++.+++|..+.....+ . ..++...+...++++||.+|+||++ |..+++.+..++.
T Consensus 236 aGa~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~g~i~vn~~G~Rf~~------e~~~~~~~~~~~~~ 301 (417)
T PF00890_consen 236 AGAALSNDPMEFIQWGPPSVPGIRDP---S-----GILITEALPGPGGIWVNADGERFMN------EDASYDDVAQAILQ 301 (417)
T ss_dssp TTCCEESTTTTCEEEEEEEETSTCCT---T-----TSBHHTHHHHTT-EEEETTSSBTHG------GGS-HHHHHHHHH-
T ss_pred cCccccCccchhhccCCccccccccc---c-----cchhhhhhccceeEEEcCCCcCccc------ccccccHHHHHHHH
Confidence 9999999 99999999887632211 0 1223344566789999999999996 4456777888887
Q ss_pred HHHHhcCC-CeEEEeCCC-CChhHHHhhChhHHHHHHHcCCC--------CCCCC-------eeEeeeeccccCceEeCC
Q 006532 375 DQLKKRNE-KYVLLDISH-KPTEKILSHFPNIAAECLKYGLD--------ITSQP-------IPVVPAAHYMCGGVRAGL 437 (641)
Q Consensus 375 ~~~~~~~~-~~v~lD~~~-~~~~~~~~~~~~~~~~~~~~G~d--------~~~~~-------i~v~p~~~~~~GGI~vD~ 437 (641)
.++..... ..+|+++++ ++.+.+.+.+..+.+.+.. |.| +.+.+ +++.|..++++|||+||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~~L~~tv~~yn~~~~~-g~d~~f~~~~~~~~~~~~~pfya~~~~~~~~~t~GGl~vd~ 380 (417)
T PF00890_consen 302 REIREPRGDAYVYLIFDGGIDPEGLAATVERYNEECEA-GVDEDFGRGIDPLKRPIPGPFYAVEVTPGIHYTMGGLKVDE 380 (417)
T ss_dssp HHHHTTTSECBEEEEETTTSHHHHHHHHCHHHHHHHHH-TSTTTTS-STTTTTSEEESSEEEEEEEEEEEEES-EEEBET
T ss_pred HhhhcccCCcceEEeeccccChhhhhhhhhHHHHhhhc-ccccccccccccccCcccccccccccccccceeeEEeeeCc
Confidence 44544433 467898887 8888888888777666654 333 33333 348899999999999999
Q ss_pred CCCc------ccCCeeecccccCCCCCCCCccchhhh
Q 006532 438 QGET------NVRGLYVAGEVACTGLHGANRLASNSL 468 (641)
Q Consensus 438 ~~~T------~ipGLyAaGe~a~~g~~Ga~rl~g~sl 468 (641)
++|+ +|||||||||++|+++||+++++|++|
T Consensus 381 ~~~vl~~~g~pIpGLyAaGe~~gg~~~g~~~~gG~~l 417 (417)
T PF00890_consen 381 DAQVLDADGQPIPGLYAAGEAAGGGVHGAYRGGGNGL 417 (417)
T ss_dssp TSEEETTTCEEEEEEEE-SCCEEESSSTTS--TTHHH
T ss_pred CcCccCCCCCEeCCEEEEEcccccccCCccCCcccCC
Confidence 9997 999999999999789999999999986
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=401.90 Aligned_cols=366 Identities=36% Similarity=0.513 Sum_probs=281.5
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCccccccCceeeccC-------CCCCHHHHHHHHHHhccCCCCH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s~~a~ggi~~~~~-------~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
||||||+|+||++||+.|+++| +|+||||....+|+|.++.|+++.... ..++++.++.++++.+.+.+++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999998 899999999888888888888875542 3578899999999988899999
Q ss_pred HHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccC--CcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
++++.+++++.+.++|++ +++.+.... ....+++..+|..++.+ ..+..+...|.+.+++ .|++++++++|
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~-~gv~i~~~~~v 153 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDD-----LIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKK-EGIDTRLNSKV 153 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeecc-----ccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHH-cCCEEEeCCEe
Confidence 999999999999999999 666664321 11234455555544433 4577899999999987 59999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc------CC-C-----CCCCcccCccchhHHHHhcCC
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH------IY-P-----STTNPLVATGDGMAMAHRAQA 300 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~------~~-~-----~~~~~~~~~Gdg~~~a~~aGa 300 (641)
++|+.++++ +|.|+++.+ .+++...+.+|.||+|||+++. .| | .+.+++.++|||+.|++++||
T Consensus 154 ~~l~~~~~g---~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa 229 (439)
T TIGR01813 154 EDLIQDDQG---TVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGA 229 (439)
T ss_pred eEeEECCCC---cEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCC
Confidence 999987556 799998865 4566667899999999999997 23 2 345677899999999999999
Q ss_pred eeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhc
Q 006532 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 380 (641)
Q Consensus 301 ~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~ 380 (641)
.+.+|+++|+||......+ .++..+.++..++++||.+|+||+++ ..+++.+++++..+...
T Consensus 230 ~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~vn~~G~RF~~E------~~~~~~~~~~~~~~~~~- 291 (439)
T TIGR01813 230 ALVDMDYIQAHPTASPDEG-----------GFLISEAVRGYGAILVNKTGERFMNE------LATRDTVSDAILAQPGK- 291 (439)
T ss_pred CccCCchhheecccccCCc-----------ceeehhhcccCcEEEECCCCCCcccc------CCcHHHHHHHHHhCCCC-
Confidence 9999999999987553211 23334445567789999999999984 45666677776655421
Q ss_pred CCCeEEEeCCCCCh----hHH-----HhhChhHHHHHHHcCC--------------------CC------------CCCC
Q 006532 381 NEKYVLLDISHKPT----EKI-----LSHFPNIAAECLKYGL--------------------DI------------TSQP 419 (641)
Q Consensus 381 ~~~~v~lD~~~~~~----~~~-----~~~~~~~~~~~~~~G~--------------------d~------------~~~~ 419 (641)
..++++|...... +.. ..+.+++.+++.+.|+ |+ .+.|
T Consensus 292 -~~~~i~d~~~~~~~~~~~~~~~~g~~~~adtleeLa~~~g~~~~~l~~tv~~yN~~~~~g~D~~f~r~~~~~~~i~~~P 370 (439)
T TIGR01813 292 -SAYLIFDDDVYKKAEMVDNYYRLGVAYKGDSLEELAKQFGIPAAALKKTVKDYNEYVASGKDTPFGRPMDMPDDLSKSP 370 (439)
T ss_pred -ceEEEECHHHHHhhhhHHHHHhcCcEEEeCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCCC
Confidence 2345566321110 000 0122344444444333 32 2456
Q ss_pred ---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006532 420 ---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480 (641)
Q Consensus 420 ---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 480 (641)
+++.|..++|+|||+||+++| ++|||||||||++ +|+||.+|++|+++++|++||++||+
T Consensus 371 fya~~~~~~~~~t~GGl~~d~~~~vl~~~g~~IpGLyAaG~~~-gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 371 YYAIKVTPGVHHTMGGVKINTKAEVLDAQGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred EEEEEEEcCccccccCeEECCCCeEECCCCCEecccEEeeecc-cccCCCCCCchhhhhhhhhhhHhhcC
Confidence 789999999999999999999 5899999999998 79999999999999999999999984
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=400.42 Aligned_cols=373 Identities=24% Similarity=0.269 Sum_probs=276.3
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeec--------cCCCCCHHHHHHHHHHhc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAV--------LCPSDSVESHMQDTIVAG 148 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~--------~~~~d~~~~~~~d~~~~g 148 (641)
.++.++||||||+|.|||+||++|++.| +|+||||....+|++.++.|.+... .+..|+++.++.++.+.+
T Consensus 16 ~~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~ 95 (492)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAV 95 (492)
T ss_pred ccCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHh
Confidence 3456899999999999999999999999 9999999998888887765444322 134688999998888888
Q ss_pred cCCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCccc--------ccCC----------Cccccceeecc---CC-c
Q 006532 149 AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHL--------AREG----------GHSHHRIVHAA---DM-T 206 (641)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~--------~~~g----------g~~~~r~~~~~---~~-~ 206 (641)
.+.+++++++.+++++++.++||+++|++|.....+.+.. ...+ .+..+|..... .. .
T Consensus 96 ~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (492)
T PRK07121 96 GPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGG 175 (492)
T ss_pred CCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCc
Confidence 8899999999999999999999999999997542221100 0000 01112222211 11 4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCcC------C-
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y- 278 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~- 278 (641)
+..+...|.+.+++ .|++|+++++|++|+++++| +|.||++.+ +++...|+| |.|||||||++.. |
T Consensus 176 g~~~~~~L~~~~~~-~gv~i~~~~~v~~l~~~~~g---~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~~~~ 249 (492)
T PRK07121 176 GAMLMDPLAKRAAA-LGVQIRYDTRATRLIVDDDG---RVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVARYA 249 (492)
T ss_pred hHHHHHHHHHHHHh-CCCEEEeCCEEEEEEECCCC---CEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHHHhC
Confidence 77899999998887 59999999999999987556 799998853 466678999 9999999999862 1
Q ss_pred C-----CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCcc
Q 006532 279 P-----STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERF 353 (641)
Q Consensus 279 ~-----~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf 353 (641)
+ .+.+++.++|||+.||+++||.+.+|+++|+++.... | .. + .++++||.+|+||
T Consensus 250 p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~-------~------~~-----~--~~~i~Vn~~G~RF 309 (492)
T PRK07121 250 PAYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYP-------P------SA-----L--LRGILVNARGQRF 309 (492)
T ss_pred CcccCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccC-------C------CC-----c--CCeEEECCCCCEe
Confidence 1 3445678999999999999999999999987543211 1 00 0 2579999999999
Q ss_pred ccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCCCCChh------H------HHhhChhHHHHHHHcCCCCC-----
Q 006532 354 MPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE------K------ILSHFPNIAAECLKYGLDIT----- 416 (641)
Q Consensus 354 ~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~~~~~~------~------~~~~~~~~~~~~~~~G~d~~----- 416 (641)
+++. .+++.++.++..+. ++..++++|....... . ...+.+++.+++++.|+|+.
T Consensus 310 ~nE~------~~~~~~~~~~~~~~--~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~kadtleeLA~~~gid~~~l~~t 381 (492)
T PRK07121 310 VNED------TYGARIGQFILEQP--GGTAYLIVDEALFEEARAQLRPQIDGRTPGAWKAETVEELARKLGIPPGGLQAT 381 (492)
T ss_pred ecCC------CcHHHHHHHHHhcc--CCcEEEEEeHHHHhhhccccccccccccCcccccCCHHHHHHHhCCCHHHHHHH
Confidence 9853 34555666654432 2234566665422100 0 01134567777776666532
Q ss_pred -----------------C----------CC---eeEee----eeccccCceEeCCC-CC------cccCCeeecccccCC
Q 006532 417 -----------------S----------QP---IPVVP----AAHYMCGGVRAGLQ-GE------TNVRGLYVAGEVACT 455 (641)
Q Consensus 417 -----------------~----------~~---i~v~p----~~~~~~GGI~vD~~-~~------T~ipGLyAaGe~a~~ 455 (641)
+ .| +++.| ..++|+||++||++ +| ++|||||||||++ +
T Consensus 382 v~~yN~~~~~G~D~~f~r~~~~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~-g 460 (492)
T PRK07121 382 VDAYNRAAAGGEDPPFHKQPEWLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCA-S 460 (492)
T ss_pred HHHHHHHhhcCCCcccCCCcccccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECCCCCCcCceEeccccc-c
Confidence 1 12 34555 89999999999999 98 4799999999997 7
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSIDH 485 (641)
Q Consensus 456 g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~ 485 (641)
|+||.+|++|+++++|++|||+||++|++.
T Consensus 461 g~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 461 GIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred cCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 999999999999999999999999998764
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=389.27 Aligned_cols=379 Identities=22% Similarity=0.251 Sum_probs=274.8
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC-ceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG-GVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g-gi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
++.++||||||+| |||+||++|++.| +|+||||....+|++.++.| ++.... +..++++..+.++.....
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 82 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVG 82 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhc
Confidence 3458999999999 9999999999999 99999999887888877665 453321 124667776666666666
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHH-cCCccccCC----CCCcccccCCCc--cccc------------eee---------
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGE----DGNLHLAREGGH--SHHR------------IVH--------- 201 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~----~g~~~~~~~gg~--~~~r------------~~~--------- 201 (641)
...++++++.+++++.+.++||++ .|++|.... .+.......+++ ..++ .++
T Consensus 83 ~~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (513)
T PRK12837 83 DRTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLG 162 (513)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhc
Confidence 678999999999999999999987 599986421 110000000110 0000 000
Q ss_pred -c-cC--CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcC-EEEEcCCCCCc
Q 006532 202 -A-AD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK-VTLLASGGAGH 276 (641)
Q Consensus 202 -~-~~--~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~ 276 (641)
. .. ..|..++..|.+.+.++.|++|++++.+++|+.+ ++ +|+||++.. +|+.+.|+|+ .|||||||+++
T Consensus 163 ~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g---~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~ 236 (513)
T PRK12837 163 APPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVE-DG---RVVGAVVER--GGERRRVRARRGVLLAAGGFEQ 236 (513)
T ss_pred cCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CC---EEEEEEEEE--CCcEEEEEeCceEEEeCCCccC
Confidence 0 00 1356788888887776569999999999999986 66 899998753 5777889995 89999999987
Q ss_pred C------CC------CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcE
Q 006532 277 I------YP------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGI 344 (641)
Q Consensus 277 ~------~~------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~ 344 (641)
+ |. .+.+++.+||||+.||+++||.+.+|++.|++|......+. . ...+...+++
T Consensus 237 n~~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~----------~---~~~~~~~~~i 303 (513)
T PRK12837 237 NDDMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGR----------S---AFALWFTGGI 303 (513)
T ss_pred CHHHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCc----------c---eeccccCceE
Confidence 5 42 45677889999999999999999999999999865432110 0 1112335789
Q ss_pred EEeCCCCccccccccccccCchhHHHHHHHHHHHhcC---CCeEEEeCCCC-------------ChhH-HH----hhChh
Q 006532 345 LYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRN---EKYVLLDISHK-------------PTEK-IL----SHFPN 403 (641)
Q Consensus 345 ~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~---~~~v~lD~~~~-------------~~~~-~~----~~~~~ 403 (641)
+||.+|+||++ |..+++.+++++..+...+. ..++.+|.... ..+. +. .+.++
T Consensus 304 ~Vn~~GkRF~n------E~~~~~~~~~a~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kaDT 377 (513)
T PRK12837 304 FVDQHGERFVN------ESAPYDRLGRAVIAEMDSGGMTLPFWMIYDDREGEVPPVKATNVSMVETAQYVAAGLWRTADT 377 (513)
T ss_pred EECCCCCCccc------CCCcHhHHHHHHHhhcccCCCCcceEEEECchhhhccCccccCCCCcCcHHHhhcCCeeecCC
Confidence 99999999997 45678888888887764332 13455665310 0011 11 13456
Q ss_pred HHHHHHHcCCCCC----------------------C---------------------CC---eeEeeeeccccCceEeCC
Q 006532 404 IAAECLKYGLDIT----------------------S---------------------QP---IPVVPAAHYMCGGVRAGL 437 (641)
Q Consensus 404 ~~~~~~~~G~d~~----------------------~---------------------~~---i~v~p~~~~~~GGI~vD~ 437 (641)
+.+++++.|+|+. + .| +++.|..++|+||++||+
T Consensus 378 leELA~k~gid~~~L~~Tv~~yN~~~~~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~~T~GGl~in~ 457 (513)
T PRK12837 378 LEELAAKIGVPADALTATVARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDT 457 (513)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCccCCCCcchhhccccCCcccceecccCCeEEEEeccccceeCCCceECC
Confidence 7777666665421 1 12 466778899999999999
Q ss_pred CCC------cccCCeeecccccCCCCCCCCccc-hhhhHHHHHHHHHHHHHHHH
Q 006532 438 QGE------TNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 438 ~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl~~a~v~G~~Ag~~aa~ 484 (641)
++| ++|||||||||++ +|++|.+|++ |+++++|++||++||++|+.
T Consensus 458 ~~qVl~~~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 458 AARVLDTDGRPIPGLYAAGNTM-AAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CceEECCCCCEeCCceeccccc-ccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 998 5899999999998 7999988885 89999999999999999864
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=390.51 Aligned_cols=383 Identities=19% Similarity=0.263 Sum_probs=274.4
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
..+.+|||||||+| +|++||+.+++.| +|+||||....+|++.++.|+++... +..|+++..+.++.....
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~~ 90 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVVG 90 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHhC
Confidence 45668999999999 8999999999999 99999999888898888877776432 236899999999998888
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHH-cCCccccCCC-CCcccccCCCccccceeec-------------------------
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHLAREGGHSHHRIVHA------------------------- 202 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~~------------------------- 202 (641)
+..++++++.+++++++.++||++ .|+.|..... ..++....+++...|.+++
T Consensus 91 ~~~~~~li~~~~~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 170 (564)
T PRK12845 91 GSAPAERSAAFLDNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVMEVSIP 170 (564)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCcccccccc
Confidence 889999999999999999999998 6777642211 0111111111110000000
Q ss_pred -----------------------------------------cCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 203 -----------------------------------------ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 203 -----------------------------------------~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
....|..++..|.+.+++ .||+|+.++++++|+.+ +|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~-~Gv~i~~~t~v~~Li~~-~g 248 (564)
T PRK12845 171 MPVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLR-AGIPIWTETSLVRLTDD-GG 248 (564)
T ss_pred ccccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHH-CCCEEEecCEeeEEEec-CC
Confidence 012366788889888887 59999999999999975 56
Q ss_pred CCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCcC------C-C------CCCCcccCccchhHHHHhcCCeeecccc
Q 006532 242 PDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y-P------STTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~-~------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+|+||++.+ +|+.+.|.| |.||||||||+++ | + .+.+++.+||||+.|++++||.+.+|++
T Consensus 249 ---~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n~em~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~ 323 (564)
T PRK12845 249 ---RVTGAVVDH--RGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAIGLMDQ 323 (564)
T ss_pred ---EEEEEEEEE--CCcEEEEEcCCEEEEecCCccccHHHHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCccCCcc
Confidence 899998754 455666777 7999999999985 3 2 2567789999999999999999999999
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh---cCCCe
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK---RNEKY 384 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~---~~~~~ 384 (641)
.|+||+.....+.. | .+++.+. ...|+++||.+|+||+++. .++..+.+++..+... +...+
T Consensus 324 ~~~~p~~~~~~~~~--~------~~~~~~~-~~~g~i~VN~~G~RF~nE~------~~~~~~~~~~~~~~~~~~~~~~~~ 388 (564)
T PRK12845 324 AWWFPAVAPLPGGA--P------AVMLAER-SLPGSLIVDQTGRRFVNEA------TDYMSFGQRVLERERAGDPVESMW 388 (564)
T ss_pred ceEecccccCCCCC--c------ccchhhh-ccCceEEECCCCCEecCCC------CchhHHHHHHHhhhccCCCCceEE
Confidence 99999765322110 1 1222221 1257899999999999853 2344455555433211 11134
Q ss_pred EEEeCCCCC--------------hhHHH-----hhChhHHHHHHHcCCC--------------------CC--C------
Q 006532 385 VLLDISHKP--------------TEKIL-----SHFPNIAAECLKYGLD--------------------IT--S------ 417 (641)
Q Consensus 385 v~lD~~~~~--------------~~~~~-----~~~~~~~~~~~~~G~d--------------------~~--~------ 417 (641)
+.+|..... ..... .+..++.+++++.|+| ++ +
T Consensus 389 ~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~G~D~dFgr~~~~~~ 468 (564)
T PRK12845 389 IVFDQQYRNSYVFAAELFPRMPIPQAWYDAGIAHRADSLADLARKIGVPVDTFVATMRRFNEMAAAGVDSDFGRGRSAYD 468 (564)
T ss_pred EEECchhhhhcccccccCCCCcccHhHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCchhh
Confidence 445543110 01111 1334555555555443 11 1
Q ss_pred -------------------CC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-hhhh
Q 006532 418 -------------------QP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSL 468 (641)
Q Consensus 418 -------------------~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl 468 (641)
.| +++.|..++|+||++||+++| ++||||||||+++ +|++|.+|++ |+++
T Consensus 469 ~~~gd~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~id~~~qVLd~dg~pI~GLYAaG~~~-gg~~g~~Y~g~G~~l 547 (564)
T PRK12845 469 RYYGDPTVTPNPNLRPLDKGPFYAVKMVLSDLGTCGGLRADERARVLREDGSVIDGLYAIGNTA-ANAFGATYPGAGATI 547 (564)
T ss_pred hhcCCCcCCCCcccCccccCCEEEEEeccccceecCCeeECCCceEECCCCCCCCCeeEeeeec-cccccCCCCCcchhh
Confidence 12 567788999999999999998 5899999999998 7999999997 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006532 469 LEALVFARRAVQPSID 484 (641)
Q Consensus 469 ~~a~v~G~~Ag~~aa~ 484 (641)
++|++||++||++|++
T Consensus 548 g~a~~fGriAg~~aa~ 563 (564)
T PRK12845 548 GQGLVYGYIAAQDAAA 563 (564)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999864
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=385.10 Aligned_cols=378 Identities=22% Similarity=0.255 Sum_probs=268.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC--CCCccccccCceeeccC-------CCCCHHHHHHHHHHhccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~--~~g~s~~a~ggi~~~~~-------~~d~~~~~~~d~~~~g~~ 150 (641)
.++||||||+|+||++||+.|++.| +|+||||... .+|++.++.| +..... ..++++.++.++++.+.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence 4689999999999999999999999 9999999874 5677766655 543322 235778899999998888
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
..++++++.+++++.+.++|+.++|++|.....+..... ..+..+.. .+..+...|.+.+++ .|+++++++
T Consensus 82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~------~~~~~~~g--~g~~l~~~l~~~~~~-~gv~i~~~t 152 (466)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVA------RTNAFFWG--GGKALVNALYRSAER-LGVEIRYDA 152 (466)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccC------CCCeeecC--CHHHHHHHHHHHHHH-CCCEEEcCC
Confidence 999999999999999999999999999976544432210 11111111 267788899988887 599999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC-------CCC------CCCcccCccchhHHHHh
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------YPS------TTNPLVATGDGMAMAHR 297 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~~~------~~~~~~~~Gdg~~~a~~ 297 (641)
+|++|+.+ ++ +|+|+++.+ .+++...|+|+.|||||||++.. ++. +.+++.++|||+.|+++
T Consensus 153 ~v~~l~~~-~g---~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~ 227 (466)
T PRK08274 153 PVTALELD-DG---RFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLD 227 (466)
T ss_pred EEEEEEec-CC---eEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHHHHHH
Confidence 99999986 56 799998743 45666689999999999999863 221 24567899999999999
Q ss_pred cCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCch--hHHHHHHHH
Q 006532 298 AQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPR--DVVARSIDD 375 (641)
Q Consensus 298 aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r--~~~~~~i~~ 375 (641)
+||.+.+ ++.|+||+.+.... |.. .... ........++++||.+|+||+++... +.++ ......+..
T Consensus 228 ~Ga~~~~-~~~~~~~~~~~~~~----~~~--~~~~-~~~~~~~~~~i~vn~~G~RF~nE~~~---~~~~~~~~~~~~~~~ 296 (466)
T PRK08274 228 AGADRIG-DPSQCHAVAIDARA----PLY--DGGI-CTRIDCVPLGIVVNRDGERFYDEGED---FWPKRYAIWGRLVAQ 296 (466)
T ss_pred cCCCccC-CccceeeEeecCCC----Ccc--CCcc-eeeecccceEEEEcCCCcEEEecCCc---cccchHHHHHHHHHc
Confidence 9999876 56788887653211 100 0011 11112234579999999999986421 1111 122222222
Q ss_pred HHHhcCCCeEEEeCCCCCh---hHH-HhhChhHHHHHHHcCCCC----------------------------------CC
Q 006532 376 QLKKRNEKYVLLDISHKPT---EKI-LSHFPNIAAECLKYGLDI----------------------------------TS 417 (641)
Q Consensus 376 ~~~~~~~~~v~lD~~~~~~---~~~-~~~~~~~~~~~~~~G~d~----------------------------------~~ 417 (641)
+ .....++++|...... ... ..+..++.+++++.|+|+ .+
T Consensus 297 ~--~~~~~~~i~d~~~~~~~~~~~~~~~~adtleeLA~~~gi~~~~l~~tv~~yN~~~~~g~~~~~~~d~~~~~~~~~~~ 374 (466)
T PRK08274 297 Q--PGQIAYQIFDAKAIGRFMPPVFPPIQADTLEELAEKLGLDPAAFLRTVAAFNAAVRPGPFDPTVLDDCGTEGLTPPK 374 (466)
T ss_pred C--CCceEEEEeCchhHhhcCcccCCccccCCHHHHHHHhCcCHHHHHHHHHHHHHhccccCCCcccccccccccCCCCc
Confidence 1 1112345556432210 000 012234444444444332 11
Q ss_pred ----CC--------eeEeeeeccccCceEeCCCCCc------ccCCeeecccccCCC-CCCCCccchhhhHHHHHHHHHH
Q 006532 418 ----QP--------IPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTG-LHGANRLASNSLLEALVFARRA 478 (641)
Q Consensus 418 ----~~--------i~v~p~~~~~~GGI~vD~~~~T------~ipGLyAaGe~a~~g-~~Ga~rl~g~sl~~a~v~G~~A 478 (641)
.| +++.|..|+|+||++||+++|+ +|||||||||++ +| +||+||++|+++++|+|||++|
T Consensus 375 ~~~~~~i~~~Pfya~~~~p~~~~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~-gg~~~g~~y~~g~~l~~~~~~G~ia 453 (466)
T PRK08274 375 SHWARPIDTPPFYAYPVRPGITFTYLGLKVDEDARVRFADGRPSPNLFAAGEMM-AGNVLGKGYPAGVGLTIGAVFGRIA 453 (466)
T ss_pred ccccCccCCCCeEEEEeccceeeecccEEECCCceEECCCCCCCCCceeccccc-ccccccCCCccccchhhhhhhHHHH
Confidence 12 3889999999999999999996 899999999998 57 9999999999999999999999
Q ss_pred HHHHHHhhh
Q 006532 479 VQPSIDHKK 487 (641)
Q Consensus 479 g~~aa~~~~ 487 (641)
|++|+++++
T Consensus 454 g~~aa~~~~ 462 (466)
T PRK08274 454 GEEAARHAQ 462 (466)
T ss_pred HHHHHHHhh
Confidence 999998864
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=387.40 Aligned_cols=384 Identities=22% Similarity=0.289 Sum_probs=270.8
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhc--
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAG-- 148 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g-- 148 (641)
++.++||||||+|.||++||+.|++.| +|+||||....+|++..++|+++... +..|+++.++.+.....
T Consensus 3 ~d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 82 (557)
T PRK12844 3 WDETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGD 82 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcc
Confidence 345799999999999999999999999 99999999888888888887765432 22455555443333222
Q ss_pred -cCCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCC-CCcccccCCCccccceeecc-----------------------
Q 006532 149 -AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGED-GNLHLAREGGHSHHRIVHAA----------------------- 203 (641)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~~~----------------------- 203 (641)
....++++++.+++++++.++||+++|++|...+. ..++....++++..|.++..
T Consensus 83 ~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (557)
T PRK12844 83 QGPASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPG 162 (557)
T ss_pred cccCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccc
Confidence 22378899999999999999999999999975321 11222223334333332211
Q ss_pred -----------------------------------------CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006532 204 -----------------------------------------DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 242 (641)
Q Consensus 204 -----------------------------------------~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 242 (641)
...|..++..|.+.+++ .|++|+.++.|++|+.+ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~-~gv~i~~~~~v~~Li~~-~g- 239 (557)
T PRK12844 163 TVVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALA-AGVPLWTNTPLTELIVE-DG- 239 (557)
T ss_pred ccccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEe-CC-
Confidence 11367788888888887 59999999999999986 56
Q ss_pred CceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCcC------CCC-------CCCcccCccchhHHHHhcCCeeeccccc
Q 006532 243 DAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------YPS-------TTNPLVATGDGMAMAHRAQAVISNMEFV 308 (641)
Q Consensus 243 ~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------~~~-------~~~~~~~~Gdg~~~a~~aGa~l~~~e~~ 308 (641)
+|+||++.. +|+.+.|+| +.|||||||+++. |.. +.+++.++|||+.|++++||.+.+|++.
T Consensus 240 --~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~m~~~ 315 (557)
T PRK12844 240 --RVVGVVVVR--DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEA 315 (557)
T ss_pred --EEEEEEEEE--CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCccccccc
Confidence 899998863 577778999 5899999999983 321 3456789999999999999999999999
Q ss_pred cccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEe
Q 006532 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLD 388 (641)
Q Consensus 309 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD 388 (641)
|++|+.+...+.+. ..+........++++||.+|+||+++.. ++..+..++..+. +...++.+|
T Consensus 316 ~~~p~~~~~~~~~~--------~~~~~~~~~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~--~~~~~~I~D 379 (557)
T PRK12844 316 WWVPGAPLPNGGPR--------PYMHNSERSKPGSIIVDRAGRRFVNEAG------SYMEVGRAMYAQD--AVPAWMIMD 379 (557)
T ss_pred cccCccccCCCCcc--------cccccccccCCcEEEECCCCCccccCCC------cHHHHHHHHHhCC--CceEEEEEC
Confidence 99998664332110 1111111234678999999999998543 3444444444321 111234445
Q ss_pred CCCCC------------hhHHH-----hhChhHHHHHHHcCCC--------------------CC---------------
Q 006532 389 ISHKP------------TEKIL-----SHFPNIAAECLKYGLD--------------------IT--------------- 416 (641)
Q Consensus 389 ~~~~~------------~~~~~-----~~~~~~~~~~~~~G~d--------------------~~--------------- 416 (641)
..... .+... .+..++.+++++.|+| ++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~atv~~yN~~~~~G~D~dFgr~~~~~~~~~~~~ 459 (557)
T PRK12844 380 SRYRKRYLFGTIPPGPTPQEWLDSGYMKRADTIEELAGKTGIDPAGLAATVERFNGFAATGTDPDFHRGESAYDRYYGDP 459 (557)
T ss_pred chHHhhcCccccCCccChHHHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCccCCCcchhhccccCC
Confidence 32110 00110 1234455554444433 11
Q ss_pred ------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-hhhhHHHHHH
Q 006532 417 ------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVF 474 (641)
Q Consensus 417 ------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~sl~~a~v~ 474 (641)
+.| +++.|..+.|+||++||+++| .+||||||||+++ +|++|.+|++ |+++++|++|
T Consensus 460 ~~~~~~~l~pi~~~PfYA~~~~~~~~~T~GGl~in~~~qVld~~g~pIpGLYAAG~~~-gg~~g~~Y~~~G~~l~~a~~~ 538 (557)
T PRK12844 460 TNKPNPSLGPLDKPPFYAVRMVPGDVGTSGGLLTDEHARVLREDGSVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVF 538 (557)
T ss_pred cCCCCcccCcCCCCCeEEEEEeccccEECCCccCCCCceEECCCCCCccceeeccccc-cccccCCCCcCccchHHHHHH
Confidence 122 467778899999999999998 4899999999997 7999999997 9999999999
Q ss_pred HHHHHHHHHHhh
Q 006532 475 ARRAVQPSIDHK 486 (641)
Q Consensus 475 G~~Ag~~aa~~~ 486 (641)
||+||++|+++.
T Consensus 539 GriAg~~aa~~~ 550 (557)
T PRK12844 539 GYIAALHAAGAR 550 (557)
T ss_pred HHHHHHHHHhcc
Confidence 999999998865
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=380.24 Aligned_cols=388 Identities=18% Similarity=0.216 Sum_probs=270.0
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
.++.++||||||+|+|||+||+.|++.| +|+||||....+|+|.+++|+++... +..++++.++.++...+.
T Consensus 7 ~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i~~~~~~~q~~~G~~d~~~~~~~~~~~~~~ 86 (584)
T PRK12835 7 NFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYVPDPEDVRRYLKQITG 86 (584)
T ss_pred CccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCccccCChhhhhcCCCCCHHHHHHHHHHHhc
Confidence 4566899999999999999999999999 99999999988898999988886543 236889999999888888
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHHcC--CccccCCCC-CcccccCCCccccceee-------------------------
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIAIG--ASFDRGEDG-NLHLAREGGHSHHRIVH------------------------- 201 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~~G--v~~~~~~~g-~~~~~~~gg~~~~r~~~------------------------- 201 (641)
+.+++++++.+++++++.++||++++ +.|...... .+.....+.....|.++
T Consensus 87 ~~~d~~~v~~~~~~s~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 166 (584)
T PRK12835 87 GLVSAARLRAYVDAAPQMMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGEDEQHLLPPLALAPK 166 (584)
T ss_pred ccCCHHHHHHHHHHhHHHHHHHHHhCCcceeeecCCCCccCCCCCCCCCCCCccCCCCCChhhhchhHHhcccccccccc
Confidence 89999999999999999999999876 444321100 00000000000000000
Q ss_pred ----------------------------------------ccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 202 ----------------------------------------AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 202 ----------------------------------------~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.....|..++..|.+.+++ .|++|+.++.+++|+++++|
T Consensus 167 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~gv~i~~~~~~~~Li~d~~g 245 (584)
T PRK12835 167 GIWFTPKDLRLFYMVRQTWAGKAVLLKLIWRMVRARVFGRRMAAIGQSLVARLRLALKD-AGVPLWLDSPMTELITDPDG 245 (584)
T ss_pred cccccHHHHHHHHhhccCcchHHHHHHHHHHHHHhhhccCccccccHHHHHHHHHHHHh-CCceEEeCCEEEEEEECCCC
Confidence 0012355566677777766 69999999999999997667
Q ss_pred CCceEEEEEEEecCCCeEEEEEcC-EEEEcCCCCCcC-------CC------CCCCcccCccchhHHHHhcCCeeecccc
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISK-VTLLASGGAGHI-------YP------STTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~~-------~~------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~ 307 (641)
+|+||++.. +++.+.|+|+ .||||||||++. .+ .+.+++.++|||+.|++++||.+.+|+.
T Consensus 246 ---~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~~~~~~~ 320 (584)
T PRK12835 246 ---AVVGAVVER--EGRTLRIGARRGVILATGGFDHDMDWRKEYLPELERKDWSFGNPANTGDGIRAGEKVGAATDLLDE 320 (584)
T ss_pred ---cEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHHHHHHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCCcccCcc
Confidence 899998853 5667789996 799999999972 22 2345678999999999999999999988
Q ss_pred ccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh--cC-CCe
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK--RN-EKY 384 (641)
Q Consensus 308 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~--~~-~~~ 384 (641)
.+++|......+.. .+++.+... .++++||.+|+||+++.. ++..++.++...... .. ..+
T Consensus 321 ~~~~~~~~~~~~~~---------~~~~~~~~~-~~~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~~~~~~~~~~~ 384 (584)
T PRK12835 321 AWWFPAICWPDGRM---------QFMLNERMM-PAQFIVNGAGKRFINEAA------PYMDFVHAMIAGQRSGVGHIPCW 384 (584)
T ss_pred ceecceeecCCCce---------eeeeeccCC-CceEEECCCCCcCcCCcC------chhhHHHHHHhhccCCCCCcceE
Confidence 77766644322110 111222111 357999999999998643 333333433322110 00 123
Q ss_pred EEEeCCCC-------------------------ChhHHH----hhChhHHHHHHHcCCC--------------------C
Q 006532 385 VLLDISHK-------------------------PTEKIL----SHFPNIAAECLKYGLD--------------------I 415 (641)
Q Consensus 385 v~lD~~~~-------------------------~~~~~~----~~~~~~~~~~~~~G~d--------------------~ 415 (641)
+.+|.... ....+. .+.+++.+++++.|+| .
T Consensus 385 ~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kAdTleeLA~~~gida~~L~aTV~~yN~~~~~G~D~ 464 (584)
T PRK12835 385 LVTDIRSFSRYVFGGHLPIPKIPFAPVPTGRKFPQAWLESGVVKKADTWDELAAKIGVPAENLRATAERFNGLARKGHDD 464 (584)
T ss_pred EEEChHHHhhcCcccccCCCccccccccccccCcHHHHhCCCeeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcCc
Confidence 44443210 000000 1223455554444433 1
Q ss_pred --CC------------------------CC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCC
Q 006532 416 --TS------------------------QP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGA 460 (641)
Q Consensus 416 --~~------------------------~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga 460 (641)
.+ .| +++.|..+.|+||++||+++| ++|||||||||++ +|++|.
T Consensus 465 dFgr~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~-Gg~~g~ 543 (584)
T PRK12835 465 DFNRGDSAYDNYYGDPTLPNPNLDPLGKPPYYAFRIELGDLGTSGGLRTDEHARVLREDDSVIPGLYAVGNTS-ASVMGR 543 (584)
T ss_pred ccCCCCcchhcccCCCCCCCccccccccCCeEEEEecccccccCcCccCCCCceEECCCCCCccceeeeeecc-cccccC
Confidence 11 12 466788899999999999998 5999999999997 799999
Q ss_pred Cccc-hhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 461 NRLA-SNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 461 ~rl~-g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
+|++ |+++++|++|||+||++|++.++.
T Consensus 544 ~Y~g~G~slg~a~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 544 SYAGAGATIGPAMTFGYVAARHAAAVVAA 572 (584)
T ss_pred CCCcCccchHHHHHHHHHHHHHHHHhhhh
Confidence 9987 789999999999999999987643
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=375.11 Aligned_cols=381 Identities=22% Similarity=0.276 Sum_probs=260.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC--CCCCccccccCceeeccCC-------CCCHHHHHHHHHHhccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGAY 150 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~--~~~g~s~~a~ggi~~~~~~-------~d~~~~~~~d~~~~g~~ 150 (641)
.++||||||+|.|||+||+.|++.| +|+||||.. ..+|++.+++|+++..... .|+++.++.++++.+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~ 82 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF 82 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence 5799999999999999999999999 999999999 6788888888888765432 68999999999998887
Q ss_pred CCCHH-----HHHHHHHH-hHHHHHHHHHcCCccccCC----CCCcccccCC--CccccceeeccCCcHHHHHHHHHHHH
Q 006532 151 LCDDE-----TVRVVCTE-GPDRIRELIAIGASFDRGE----DGNLHLAREG--GHSHHRIVHAADMTGREIERALLEAV 218 (641)
Q Consensus 151 ~~~~~-----~~~~~~~~-~~~~i~~l~~~Gv~~~~~~----~g~~~~~~~g--g~~~~r~~~~~~~~g~~~~~~l~~~~ 218 (641)
..++. +++.++++ +++.++||+++|++|.... ++.. ..+ +++.+| .|..+.+|..++..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~---~~~~~~~~~~r-~~~~~~~G~~~~~~l~~~~ 158 (549)
T PRK12834 83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGG---DAGGHGNSVPR-FHITWGTGPGVVEPFERRV 158 (549)
T ss_pred CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCc---ccCCcccccCc-eecCCCCcHHHHHHHHHHH
Confidence 76665 35677775 7999999999999997532 1211 122 235566 4544556778888887776
Q ss_pred H---cCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCC-------------CeEEEEEcCEEEEcCCCCCcC-----
Q 006532 219 V---SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVET-------------QEVVRFISKVTLLASGGAGHI----- 277 (641)
Q Consensus 219 ~---~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~-------------g~~~~i~Ak~VVlAtGg~~~~----- 277 (641)
+ +..+|+|++++++++|+++ ++ +|+||++.+..+ ++.+.|+||.||||||||+.+
T Consensus 159 ~~~~~~~gv~i~~~t~~~~Li~~-~g---~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em~~ 234 (549)
T PRK12834 159 REAAARGLVRFRFRHRVDELVVT-DG---AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHELVR 234 (549)
T ss_pred HHHHHhCCceEEecCEeeEEEEe-CC---EEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHHHH
Confidence 4 2346999999999999986 66 899999753211 235688999999999999986
Q ss_pred --CC----------CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEE
Q 006532 278 --YP----------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL 345 (641)
Q Consensus 278 --~~----------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~ 345 (641)
++ .+.++..+||||+.||+++||.+.+|+.++.+|..+...+ +..+.. ... .....++++
T Consensus 235 ~~~p~~~~~~~~~~~~~~~~~~tGdGi~ma~~aGA~l~~~~~~~~~~~~~~~~~-~~~~~~----~~~---~~~~~~~i~ 306 (549)
T PRK12834 235 RNWPERLGTPPKDMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWD-PIWPNH----GIR---ILPGPSSLW 306 (549)
T ss_pred HhCccccCCCccccccCCCCCCCcHHHHHHHHcCCcEeCcccccccccccCCCC-CcCccc----cce---eccCCCEEE
Confidence 23 1345556899999999999999999998776654432211 000000 010 112245799
Q ss_pred EeCCCCccccccccccccCchhHHH--HHHHHHHHhcCCCeEEEeCCC--------------------------------
Q 006532 346 YNLGMERFMPLYDERAELAPRDVVA--RSIDDQLKKRNEKYVLLDISH-------------------------------- 391 (641)
Q Consensus 346 vn~~G~rf~~~~~~~~~~~~r~~~~--~~i~~~~~~~~~~~v~lD~~~-------------------------------- 391 (641)
||.+|+||+++..+. ++... .++.++ .....+..+|...
T Consensus 307 Vn~~GkRF~nE~~~~-----~~~~~~~~~~~~~--~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (549)
T PRK12834 307 FDATGNRLPAPLFPG-----FDTLGTLKHILKT--GYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWKLLLRRRGKGA 379 (549)
T ss_pred ECCCCCCCCCCcccc-----ccHHHHHHHHhcc--CCccEEEEeCHHHHHHhhccCccccCcccccchhhhhhhhhcCCC
Confidence 999999999874210 00000 111000 0000011111100
Q ss_pred -CChhHHH------hhChhHHHHHHHcC-----------------------------CCC--------------------
Q 006532 392 -KPTEKIL------SHFPNIAAECLKYG-----------------------------LDI-------------------- 415 (641)
Q Consensus 392 -~~~~~~~------~~~~~~~~~~~~~G-----------------------------~d~-------------------- 415 (641)
...+.+. .+..++.+++.+.| .|+
T Consensus 380 ~~~~~~~~~~g~~~~kAdTleELA~k~g~~~~~~~id~~~L~~tv~~yN~~~~~~fg~d~~~~~~~~~~~~~~~~~~~~~ 459 (549)
T PRK12834 380 PGPVEAFKDHGEDFVVADDLEELVAGMNALTGEPLLDYAHLRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVA 459 (549)
T ss_pred CccHHHHHhcCCcEEEeCCHHHHHHHhcccccccCCCHHHHHHHHHHHhhhhcCccccchhhhhhhhhhhhcccchhccc
Confidence 0000000 01122222222222 221
Q ss_pred --------CCCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccC---CCCCCCCccchhhhHHHHHHH
Q 006532 416 --------TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVAC---TGLHGANRLASNSLLEALVFA 475 (641)
Q Consensus 416 --------~~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~---~g~~Ga~rl~g~sl~~a~v~G 475 (641)
.+.| +++.|..+.|+||++||+++| ++|||||||||+++ +|++|.++++|+++++|++||
T Consensus 460 ~~~~~~~~~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~G 539 (549)
T PRK12834 460 KPHRLLDPAAGPLIAVRLHILTRKTLGGLETDLDSRVLGADGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSG 539 (549)
T ss_pred CCccccCCCCCCEEEEEEeccccEEccCEeECCCCceeCCCCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHH
Confidence 1233 577888999999999999998 58999999999983 378888899999999999999
Q ss_pred HHHHHHHHH
Q 006532 476 RRAVQPSID 484 (641)
Q Consensus 476 ~~Ag~~aa~ 484 (641)
|+||++|++
T Consensus 540 riAg~~aa~ 548 (549)
T PRK12834 540 RAAGRAAAR 548 (549)
T ss_pred HHHHHHHhh
Confidence 999999864
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=362.21 Aligned_cols=388 Identities=21% Similarity=0.222 Sum_probs=261.9
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
..+.++||+|||+|.+|++||+.|++.| +|+||||....+|++.++.|+++... +..++.+..+.++.....
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 83 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLG 83 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhC
Confidence 3456899999999999999999999999 99999999888888888777765432 225777777777777777
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHH-cCCccccCCC-CCcccccCCCccccceee--------------------------
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHLAREGGHSHHRIVH-------------------------- 201 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~~~~gg~~~~r~~~-------------------------- 201 (641)
..+++++++.+++++++.++||++ .+++|..... ..++....++....|.++
T Consensus 84 ~~~~~~~~~~~~~~s~e~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 163 (572)
T PRK12839 84 ENYDADKVDALLDGAPEMVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSF 163 (572)
T ss_pred CCCCHHHHHHHHHhCHHHHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCcccccc
Confidence 889999999999999999999998 5677631100 000000000000000000
Q ss_pred -----------------------------------------cc---CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 202 -----------------------------------------AA---DMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 202 -----------------------------------------~~---~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.. ...|..++..|.+.+.+ .|++|+.++.+++|+.
T Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~-~Gv~i~~~t~v~~Li~ 242 (572)
T PRK12839 164 LGMGIMAGPDLQAFLHATQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADD-LGVDLRVSTSATSLTT 242 (572)
T ss_pred cccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEE
Confidence 00 01366788889888887 5999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc-------CCCCC--------CCcccCccchhHHHHhcCCee
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH-------IYPST--------TNPLVATGDGMAMAHRAQAVI 302 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~-------~~~~~--------~~~~~~~Gdg~~~a~~aGa~l 302 (641)
+++| +|+||++.+ .+++...+.+|.||||||||++ +++.+ .+++.++|||+.|++++||.+
T Consensus 243 ~~~g---~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~l 318 (572)
T PRK12839 243 DKNG---RVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAESVGARL 318 (572)
T ss_pred CCCC---cEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCHHHHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCCcc
Confidence 6566 899998865 3565444556999999999998 45532 356789999999999999999
Q ss_pred eccc--cccccceeecCCCCCCCCCCCCCccceeecccc-CCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh
Q 006532 303 SNME--FVQFHPTALADEGLPIKPKKTRENSFLITEAVR-GDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK 379 (641)
Q Consensus 303 ~~~e--~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~-~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~ 379 (641)
.++. ..+++|..+...... . . ..+.....+ ..+.++||.+|+||+++.. ++..++.++..+...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~---~---~-~~~~~~~~~~~~g~i~VN~~GkRF~nE~~------~~~~~~~~~~~~~~~ 385 (572)
T PRK12839 319 DRDLASPAAWCPVSLVPYRNG---K---V-GTFPHIMDRGKPGSIGVLATGKRFVNEAN------GYYDYTLAMVKAAPE 385 (572)
T ss_pred ccCCcccccccceecccCCCC---c---c-ccccccccccCCceEEECCCCCcCCCCCC------ccccHHHHHHHhccC
Confidence 8743 334555543221100 0 0 000000011 2568999999999998632 233344444433211
Q ss_pred cC--CCeEEEeCCCC-------------ChhH-H----HhhChhHHHHHHHcCCC--------------------CC--C
Q 006532 380 RN--EKYVLLDISHK-------------PTEK-I----LSHFPNIAAECLKYGLD--------------------IT--S 417 (641)
Q Consensus 380 ~~--~~~v~lD~~~~-------------~~~~-~----~~~~~~~~~~~~~~G~d--------------------~~--~ 417 (641)
+. ..++.+|.... .... + ..+.+++.+++++.|+| ++ +
T Consensus 386 ~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~G~D~dFgr 465 (572)
T PRK12839 386 GEPVCSWLIADSRFVRKYPLGMAKPLPVPLTPYLRSGYLTRGRTIEELAEKCGIDPAGLEATVAEFNENARDGEDPEFGR 465 (572)
T ss_pred CCCccEEEEeChHHHhhccccccCCCCCccHhHhhcCcEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCcCcCC
Confidence 11 12444553210 0001 0 01234455554444433 11 1
Q ss_pred -------------------------CC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCc-
Q 006532 418 -------------------------QP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR- 462 (641)
Q Consensus 418 -------------------------~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~r- 462 (641)
.| +++.|..++|+||++||+++| ++|||||||||++ +|++|.++
T Consensus 466 ~~~~~~~~~gd~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~pIpGLYAAG~~~-gg~~g~~Y~ 544 (572)
T PRK12839 466 GTTPFNRGSGDPDNGPNPSLAPLEKGPFYAVKVVPGSFGTFAGLVADGKSRVLRDDDTPIDGLYAAGNDQ-ASVMGGHYP 544 (572)
T ss_pred CcchhhcccCCcccCCCcccccCCCCCeEEEEEeccccccCCCccCCCCceEECCCCCCcCCceeccccc-cccccCCCC
Confidence 12 567788999999999999998 5899999999997 78888655
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 006532 463 LASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 463 l~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
++|++++.|++||++||++|++
T Consensus 545 ~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 545 SGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CcccchhHHHHHHHHHHHHHHh
Confidence 6799999999999999999875
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=352.90 Aligned_cols=372 Identities=20% Similarity=0.204 Sum_probs=258.8
Q ss_pred EECccHHHHHHHHHHHhcC-CeEEEEecCC--CCCccccccCceeecc-------CCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 87 VIGgG~AGl~AA~~aa~~G-~V~llek~~~--~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
|||+|.||++||+.|++.| +|+||||... .+|++... +++.... ...++++.++.++++.+.+.+++++
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHG-RNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccc-cchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 7999999999999999999 9999999875 34444332 2221111 1236778899999998889999999
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
++.+++++++.++||+++|++|.....+.+.. ..+.++. ...+..++..|.+.+++ .|++|+++++|++|+
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~-------~~~~~~~-~~~g~~l~~~L~~~a~~-~Gv~i~~~~~v~~l~ 150 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPY-------SRRTAFL-RGGGKALTNALYSSAER-LGVEIRYGIAVDRIP 150 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCccc-------cCceeee-cCCHHHHHHHHHHHHHH-cCCEEEeCCEEEEEE
Confidence 99999999999999999999997543332211 0111222 23577899999999987 599999999999999
Q ss_pred ecC-CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC-------CCC------CCCcccCccchhHHHHhcCCee
Q 006532 237 TTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------YPS------TTNPLVATGDGMAMAHRAQAVI 302 (641)
Q Consensus 237 ~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~-------~~~------~~~~~~~~Gdg~~~a~~aGa~l 302 (641)
.++ ++ +|+|+... .++ ..|+||.|||||||++.. ++. +.+.+.++|||+.|++++||.+
T Consensus 151 ~~~~~g---~v~gv~~~--~~~--~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~Ga~~ 223 (432)
T TIGR02485 151 PEAFDG---AHDGPLTT--VGT--HRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEGAQA 223 (432)
T ss_pred ecCCCC---eEEEEEEc--CCc--EEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcCccc
Confidence 763 45 78888762 122 478999999999999873 111 2245678999999999999998
Q ss_pred eccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC
Q 006532 303 SNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE 382 (641)
Q Consensus 303 ~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~ 382 (641)
.++. .++|+..... .. |... ...........++++||.+|+||+++..+.. ...+..+...+..+ .+..
T Consensus 224 ~~~~-~~~~~~~~~~-~~---~~~~---~~~~~~~~~~~~~i~vn~~G~RF~~E~~~~~-~~~~~~~~~~~~~~--~~~~ 292 (432)
T TIGR02485 224 IGDP-TDGHVVAVDA-RA---PFHD---GGIVTRIDGMQLGIVVGRDGRRFADEGAIRG-PERYAVWGRQLASR--PGQR 292 (432)
T ss_pred cCCC-CcceeEeecC-CC---CcCC---CceeeeecccccEEEECCCCCEeeecCCccc-cchHHHHHHHHHhC--CCCe
Confidence 7664 4556554321 10 1000 1112222223567999999999998532210 00111222222221 1112
Q ss_pred CeEEEeCCCCCh---hH-HHhhChhHHHHHHHcCCCCC---------------------CCC---eeEeeeeccccCceE
Q 006532 383 KYVLLDISHKPT---EK-ILSHFPNIAAECLKYGLDIT---------------------SQP---IPVVPAAHYMCGGVR 434 (641)
Q Consensus 383 ~~v~lD~~~~~~---~~-~~~~~~~~~~~~~~~G~d~~---------------------~~~---i~v~p~~~~~~GGI~ 434 (641)
.++++|....+. .. ...+..++.+++++.|+|+. +.| +++.|..|+|+||++
T Consensus 293 ~~~i~D~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~g~~~i~~~PfYa~~~~p~~~~T~GGl~ 372 (432)
T TIGR02485 293 AYILLDADAAKRLPPMACPPLSADTLEELAGLLGIDPGGLAETLDRPNAAPRTGARMILVVPFHAYPMIPGITFTRYGLV 372 (432)
T ss_pred EEEEecchhhhhcccccCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeecccceeccceE
Confidence 356677643210 00 00134566677777777643 233 788999999999999
Q ss_pred eCCCCC------cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 435 AGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 435 vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
||+++| .+|||||||||++++++||.+|++|+++++|++|||+||++|++++
T Consensus 373 id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 373 VDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred ECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 999998 4899999999997668999999999999999999999999998764
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=356.60 Aligned_cols=381 Identities=23% Similarity=0.304 Sum_probs=261.3
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhccC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~ 150 (641)
++.++||||||+|++|++||+.|++.| +|+||||....+|++.++.|+++... +..++.+....+.......
T Consensus 4 ~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 83 (557)
T PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDTPEAARTYLHSIVGD 83 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 455799999999999999999999999 99999999888888888777765432 2245666666666666666
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHc-CCccccCC-CCCcccccCCCccccceee---------------------------
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAI-GASFDRGE-DGNLHLAREGGHSHHRIVH--------------------------- 201 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~-Gv~~~~~~-~g~~~~~~~gg~~~~r~~~--------------------------- 201 (641)
..+++.++.+.++.++.++|+.+. +..+.... .+.+.....++....+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~ 163 (557)
T PRK07843 84 VVPPERIDAYLDRGPEMLSFVLAHSPLKLCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLNM 163 (557)
T ss_pred hcCHHhhhhHHhcChHHHHHHHhcCCceEEecCCCCCcCCCCCCCCCCCceecCCCCChhhhhhHHHHhccccccccccc
Confidence 678889999999999999998874 54332211 0111000000000000000
Q ss_pred --------------------------------------ccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006532 202 --------------------------------------AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 243 (641)
Q Consensus 202 --------------------------------------~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 243 (641)
.....+..+...|.+.+++ .|+++++++.+++|+.+ ++
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~-~gv~v~~~t~v~~l~~~-~g-- 239 (557)
T PRK07843 164 VVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQR-AGVPVLLNTPLTDLYVE-DG-- 239 (557)
T ss_pred cccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHc-CCCEEEeCCEEEEEEEe-CC--
Confidence 0001245567778777877 59999999999999986 56
Q ss_pred ceEEEEEEEecCCCeEEEEEcC-EEEEcCCCCCc------CCC-------CCCCcccCccchhHHHHhcCCeeecccccc
Q 006532 244 AVCHGVDTLNVETQEVVRFISK-VTLLASGGAGH------IYP-------STTNPLVATGDGMAMAHRAQAVISNMEFVQ 309 (641)
Q Consensus 244 ~~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGg~~~------~~~-------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q 309 (641)
+|+||++.. +++...|+|+ .|||||||+.. .|. .+.++..++|||+.|++++||.+.+|++.|
T Consensus 240 -~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~~m~~~~ 316 (557)
T PRK07843 240 -RVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAALDLMDDAW 316 (557)
T ss_pred -EEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHHHHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCCccCchhhc
Confidence 899998853 5667789996 79999999997 231 245677899999999999999999999999
Q ss_pred ccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHH----HHHh-c--CC
Q 006532 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD----QLKK-R--NE 382 (641)
Q Consensus 310 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~----~~~~-~--~~ 382 (641)
++|+.....+ + .+++.+. ..+++++||.+|+||++++ .+++.++.++.. +... + ..
T Consensus 317 ~~p~~~~~~~----~------~~~~~~~-~~~g~i~VN~~G~RF~nE~------~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (557)
T PRK07843 317 WGPTIPLPGG----P------WFALSER-NLPGSIIVNMSGKRFMNES------APYVEAVHHMYGGEYGQGPGPGENIP 379 (557)
T ss_pred cCCccccCCC----c------chhhhhh-ccCCeEEECCCCCcccCCC------CcHHHHHHHHHhhccccccCCCCCce
Confidence 9987532111 1 1222221 1257899999999999854 344445555441 1100 0 01
Q ss_pred CeEEEeCCCC--------------ChhHH----HhhChhHHHHHHHcCCCC--------------------C--------
Q 006532 383 KYVLLDISHK--------------PTEKI----LSHFPNIAAECLKYGLDI--------------------T-------- 416 (641)
Q Consensus 383 ~~v~lD~~~~--------------~~~~~----~~~~~~~~~~~~~~G~d~--------------------~-------- 416 (641)
.++.+|.... +.+.+ ..+.+++.+++++.|+|+ +
T Consensus 380 ~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~aTV~~yN~~~~~G~D~~Fgr~~~~~ 459 (557)
T PRK07843 380 AWLVFDQRYRDRYLFAGLQPRQPIPSRWLESGVIVKADTLAELAAKIGVPADALTATVQRFNGFARSGVDEDFHRGESAY 459 (557)
T ss_pred EEEEECchHHhhcCcCcCCCCCCCcHHHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCcccCCCCccc
Confidence 2344553211 00001 013345555555554432 1
Q ss_pred -------------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-hhh
Q 006532 417 -------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNS 467 (641)
Q Consensus 417 -------------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g~s 467 (641)
+.| +++.|..+.|+||++||+++| .+|||||||||++ +|++|.+|++ |++
T Consensus 460 ~~~~~~~~~~~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~ 538 (557)
T PRK07843 460 DRYYGDPTNKPNPNLGELSHAPFYAAKMVPGDLGTKGGLRTDVRGRVLRDDGSVIEGLYAAGNVS-APVMGHTYAGPGAT 538 (557)
T ss_pred ccccCCCCCCCCcccccccCCCeEEEEEecccceeCCCceECCCceEECCCCCCcCCceeccccc-cccccCCcCccccc
Confidence 112 567788999999999999998 4899999999998 7899999987 889
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006532 468 LLEALVFARRAVQPSID 484 (641)
Q Consensus 468 l~~a~v~G~~Ag~~aa~ 484 (641)
+++|++|||+||++|++
T Consensus 539 ~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 539 IGPAMTFGYLAALDIAA 555 (557)
T ss_pred hhhHHHHHHHHHHHHhh
Confidence 99999999999999875
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=354.32 Aligned_cols=391 Identities=20% Similarity=0.203 Sum_probs=265.2
Q ss_pred CCccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhc
Q 006532 77 DGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAG 148 (641)
Q Consensus 77 ~~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g 148 (641)
..++.++||||||+|++|++||+.|+++| +|+||||....+|++..++|+++... +..|+++.++.++....
T Consensus 11 ~~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~~~ 90 (578)
T PRK12843 11 ERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDALV 90 (578)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHHhh
Confidence 34566899999999999999999999999 99999999988888888888776432 23688888877777666
Q ss_pred cCCCCHHHHHHHHHHhHHHHHHHHH-cCCccccC---CC-----------CCcc-----------------------ccc
Q 006532 149 AYLCDDETVRVVCTEGPDRIRELIA-IGASFDRG---ED-----------GNLH-----------------------LAR 190 (641)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~---~~-----------g~~~-----------------------~~~ 190 (641)
....++++++.+++++++.++||++ .|+.|... .+ +... ...
T Consensus 91 ~~~~d~~lv~~~~~~s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (578)
T PRK12843 91 GDRSPEELRDAFLASGPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIPEFTV 170 (578)
T ss_pred CCCCcHHHHHHHHhccHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhccccccccc
Confidence 6668999999999999999999996 78888421 11 0000 001
Q ss_pred CCCccccce------------------------------eec-cC--CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 191 EGGHSHHRI------------------------------VHA-AD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 191 ~gg~~~~r~------------------------------~~~-~~--~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.++++..+. .+. .. ..|..++..|.+.+++ .|++++.++.+++|+.
T Consensus 171 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~-~Gv~i~~~t~v~~Li~ 249 (578)
T PRK12843 171 LGGMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRA-RGVRILTQTDVESLET 249 (578)
T ss_pred cccccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHh-CCCEEEeCCEEEEEEe
Confidence 122221110 000 00 1367788899999987 5999999999999997
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCcC------------CCCCCCcccCccchhHHHHhcCCeeec
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------------YPSTTNPLVATGDGMAMAHRAQAVISN 304 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~~------------~~~~~~~~~~~Gdg~~~a~~aGa~l~~ 304 (641)
+ ++ +|+||.+.+ +++.+.|.| +.|||||||++++ +..++++..++|||+.|++++||.+.+
T Consensus 250 ~-~g---~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~~ 323 (578)
T PRK12843 250 D-HG---RVIGATVVQ--GGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYGR 323 (578)
T ss_pred e-CC---EEEEEEEec--CCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCccc
Confidence 6 56 899998753 566678887 7999999999985 344667788999999999999999876
Q ss_pred cccc--cccceeecCCCCCCCCCCCCCccceeeccccC-CCcEEEeCCCCccccccccccccCchhHHHHHHHHHHH-hc
Q 006532 305 MEFV--QFHPTALADEGLPIKPKKTRENSFLITEAVRG-DGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLK-KR 380 (641)
Q Consensus 305 ~e~~--q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~-~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~-~~ 380 (641)
|... .+.|......... .. ..+......++ .++++||.+|+||+++. .+++.++.++..... ..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~g~I~VN~~GkRF~nE~------~~~~~~~~~~~~~~~~~~ 391 (578)
T PRK12843 324 GLLSNAFWAPVSVRRRADG--ST----AVFPHFYLDRGKPGTIAVNQQGRRFVNES------TSYHLFGTAMFAAGKTSP 391 (578)
T ss_pred cCcccceecccccccCCCC--cc----ccccchhhhccCCCeEEECCCCCccccCC------ccHHHHHHHHHhhccCCC
Confidence 5321 1233221110000 00 00000000122 46899999999999853 344444544433211 01
Q ss_pred -CCCeEEEeCCCCC-------------hhHH-----HhhChhHHHHHHHcCCC--------------------CC-----
Q 006532 381 -NEKYVLLDISHKP-------------TEKI-----LSHFPNIAAECLKYGLD--------------------IT----- 416 (641)
Q Consensus 381 -~~~~v~lD~~~~~-------------~~~~-----~~~~~~~~~~~~~~G~d--------------------~~----- 416 (641)
...++.+|..... .+.. ..+..++.+++++.|+| ++
T Consensus 392 ~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dFgr~~ 471 (578)
T PRK12843 392 GIPAYLITDAEFLRKYGLGMVRPGGRGLAPFLRDGYLTVASTLDELAPKLGIDPAALAATVQRHNQYARTGIDPDFGRGA 471 (578)
T ss_pred CccEEEEEChHHHhhcCcccCCCCCcCcHhHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence 1123444432110 0000 01223444454444433 11
Q ss_pred ----------------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-
Q 006532 417 ----------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA- 464 (641)
Q Consensus 417 ----------------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~- 464 (641)
+.| +++.|..+.|+||++||+++| +.||||||||+++ +|++|.++++
T Consensus 472 ~~~~~~~~~~~~~~~~~l~pi~~~PfYA~~~~p~~~~T~GGl~in~~~qVld~dg~pIpGLYAaG~~~-gg~~g~~y~~~ 550 (578)
T PRK12843 472 TAYQRMNGDAMIGPNPNLGPIETAPFYAVRLYPGDIGAATGLVTDASARVLNADGQPISGLYACGNDM-ASIMGGTYPGP 550 (578)
T ss_pred chhhcccCCcccCCCCcccccCCCCeEEEEecCCccccCCCccCCCCceEECCCCCCcCCceeccccc-cccccCCCCCc
Confidence 112 567788899999999999998 5899999999998 7999988865
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhh
Q 006532 465 SNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 465 g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
|+++++|++|||+||++|+++++
T Consensus 551 G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 551 GITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred ccchHHHHHHHHHHHHHHHHhhh
Confidence 78999999999999999988753
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=352.94 Aligned_cols=389 Identities=21% Similarity=0.233 Sum_probs=256.1
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhccCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYL 151 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~~~ 151 (641)
+.++||||||+|+||++||+.|+++| +|+||||....+|++.++.|.++... +..++++.++.++.+...+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 86 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREAARTYLKHETGAF 86 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHHHHHHHHHhcCCC
Confidence 45799999999999999999999999 99999999988888888766544321 23578888877777776778
Q ss_pred CCHHHHHHHHHHhHHHHHHHHH-cCCccccCCCCCcccccCCCccccceee-----------------------------
Q 006532 152 CDDETVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVH----------------------------- 201 (641)
Q Consensus 152 ~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~----------------------------- 201 (641)
.++++++.+++++.+.++||++ .|+.|.......+.....++....|.++
T Consensus 87 ~~~~~~~~~~~~~~~~i~wl~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~ 166 (574)
T PRK12842 87 FDAAAVEAFLDNGPEMVEFFERETEVKFVPTLYPDYHPDAPGGVDIGRSILAAPYDIRGLGKDMARLRPPLKTITFIGMM 166 (574)
T ss_pred CCHHHHHHHHhccHHHHHHHHhCCCCceeeCCCCCCCCCCCCccCCCccccCCCCChhhhhhhHHhhcCCccccccccee
Confidence 8999999999999999999986 5888853211111000011110000000
Q ss_pred --------------------------------------ccC---CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 202 --------------------------------------AAD---MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 202 --------------------------------------~~~---~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
... ..|..+...|.+.+++ .|++|+.++.|++|+.+ +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~-~Gv~i~~~~~v~~l~~~-~ 244 (574)
T PRK12842 167 FNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD-LGIPILTGTPARELLTE-G 244 (574)
T ss_pred cccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEee-C
Confidence 000 1356677888888877 59999999999999986 5
Q ss_pred CCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCC-------cCCCC--------CCCcccCccchhHHHHhcCCeeec
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAG-------HIYPS--------TTNPLVATGDGMAMAHRAQAVISN 304 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~-------~~~~~--------~~~~~~~~Gdg~~~a~~aGa~l~~ 304 (641)
+ +|+||++.+. ++ ...+.| +.||||||+++ .+|+. ++++..++|||+.|++++||.+.+
T Consensus 245 g---~V~GV~~~~~-~~-~~~i~a~k~VVlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~l~~ 319 (574)
T PRK12842 245 G---RVVGARVIDA-GG-ERRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGGAVDI 319 (574)
T ss_pred C---EEEEEEEEcC-Cc-eEEEEeCCEEEEcCCCccchHHHHHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCCCccc
Confidence 6 8999988752 33 456788 58999999999 44543 456778999999999999999864
Q ss_pred cc--cccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh--c
Q 006532 305 ME--FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK--R 380 (641)
Q Consensus 305 ~e--~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~--~ 380 (641)
+. ...++|........ . +.. . ...+. .....+.++||.+|+||+++.. +++.++.++...... +
T Consensus 320 ~~~~~~~~~~~~~~~~~~-~-~~~-~-~~~~~--~~~~~g~i~Vn~~G~RF~nE~~------~~~~~~~~~~~~~~~~~~ 387 (574)
T PRK12842 320 RFPDAAAWMPVSKVPLGG-G-RTG-V-FPHLL--DRYKPGVIGVLRNGKRFTNESN------SYHDVGAAMIRACEGQKE 387 (574)
T ss_pred CCcccccccccccccCCC-C-ccc-c-ccccc--cccCCceEEECCCCCCccCCCC------cHhHHHHHHHHhcccCCC
Confidence 31 11122221100000 0 000 0 00000 0112467999999999998643 233333333322111 1
Q ss_pred CCCeEEEeCCCC-------------ChhHHH-----hhChhHHHHHHHcCCC--------------------CC------
Q 006532 381 NEKYVLLDISHK-------------PTEKIL-----SHFPNIAAECLKYGLD--------------------IT------ 416 (641)
Q Consensus 381 ~~~~v~lD~~~~-------------~~~~~~-----~~~~~~~~~~~~~G~d--------------------~~------ 416 (641)
...++.+|.... ..+... .+..++.+++++.|+| ++
T Consensus 388 ~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~~Fgr~~~ 467 (574)
T PRK12842 388 TAMWLICDRATLRKYGLGYAKPAPMPVGPLLRNGYLIKGDTLAELAGKAGIDAAGLEATVRRYNEGAVKGIDPAFGRGST 467 (574)
T ss_pred ccEEEEEcHHHHhhcCcccCCCCCCChHHHHhcCcEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence 112344442100 000000 0123444444433332 11
Q ss_pred ---------------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCccc-h
Q 006532 417 ---------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-S 465 (641)
Q Consensus 417 ---------------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~rl~-g 465 (641)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.++.+ |
T Consensus 468 ~~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~y~~~G 546 (574)
T PRK12842 468 SFNRYLGDPDHKPNPCVAPIGSGPFYAVKVIMGDLGTFDGLRTDVTGEVLDADGTPIAGLYAVGNDR-ASIMGGNYPGAG 546 (574)
T ss_pred hhhhhcCCcccCCCcccccCCCCCEEEEEecccccccCCCcCCCCCceEECCCCCCcCCceeccccc-ccCccCCCCCCc
Confidence 122 567788999999999999998 5899999999998 7999999887 9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc
Q 006532 466 NSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 466 ~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
+++++|++||++||++|++.++.
T Consensus 547 ~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 547 ITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred ccHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999987643
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=342.82 Aligned_cols=389 Identities=21% Similarity=0.252 Sum_probs=257.5
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeecc-------CCCCCHHHHHHHHHHhcc
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~-------~~~d~~~~~~~d~~~~g~ 149 (641)
.++.++||||||+|++|++||+.++++| +|+||||....+|++..+.|.++... +..++.+..+.++.....
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 87 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHELG 87 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHhC
Confidence 3566899999999999999999999999 99999999887888777766555332 234677777766666666
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHH-cCCccccCCC-CCccc----ccCCCccc---------------------cce---
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHL----AREGGHSH---------------------HRI--- 199 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~-g~~~~----~~~gg~~~---------------------~r~--- 199 (641)
+..++++++.+++++.+.++||++ .|++|..... ..+.. ...++++. ++.
T Consensus 88 ~~~~~~l~~~~~~~s~~~~~wl~~~~gv~~~~~~~~~d~~~~~~~~~~ggr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 167 (581)
T PRK06134 88 ARYDAARIDAFLEAGPHMVAFFERHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRELGALLERLRKPLRETSFM 167 (581)
T ss_pred cCCCHHHHHHHHhccHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCeeccCCCChhhhhHHHHHhcccccccccc
Confidence 778999999999999999999987 4788742110 00000 00001000 000
Q ss_pred --------------------------------------eec---cCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 200 --------------------------------------VHA---ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 200 --------------------------------------~~~---~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+. ....|..++..|.+.+++ .|++|+++++|++|+.+
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~-~Gv~i~~~t~v~~l~~~ 246 (581)
T PRK06134 168 GMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAED-LGVRIWESAPARELLRE 246 (581)
T ss_pred ccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEe
Confidence 000 012356678889888887 59999999999999986
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCc-------CCCC--------CCCcccCccchhHHHHhcCCee
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGH-------IYPS--------TTNPLVATGDGMAMAHRAQAVI 302 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~-------~~~~--------~~~~~~~~Gdg~~~a~~aGa~l 302 (641)
++ +|+||++.+ +++...|+| |.||||||+++. +++. +.++..++|||+.|++++||.+
T Consensus 247 -~g---~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~ 320 (581)
T PRK06134 247 -DG---RVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAGGVV 320 (581)
T ss_pred -CC---EEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhCCCc
Confidence 56 899998764 344567899 999999999986 3442 3456789999999999999998
Q ss_pred ec-c-ccccccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh-
Q 006532 303 SN-M-EFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK- 379 (641)
Q Consensus 303 ~~-~-e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~- 379 (641)
.. + .+.+++|+.+...... .. .....++. ....+.++||.+|+||+++.. ++..+..++......
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g--~~--~~~~~~~~--~~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~~~~ 388 (581)
T PRK06134 321 ATDLASPVAWAPVSLVPHADG--SV--GHFPHIIE--RGKPGLIGVLANGKRFVNEAD------SYHDYVAAMFAATPPG 388 (581)
T ss_pred cCCCCcccccccccccCCCCC--cc--cccccccc--cCCCCeEEECCCCCcccCCCc------chhhHHHHHHHhcCCC
Confidence 63 3 3567787654321100 00 00001111 112568999999999998532 222233333332111
Q ss_pred cC-CCeEEEeCCCC-------------ChhHHH-----hhChhHHHHHHHcCCC--------------------CC----
Q 006532 380 RN-EKYVLLDISHK-------------PTEKIL-----SHFPNIAAECLKYGLD--------------------IT---- 416 (641)
Q Consensus 380 ~~-~~~v~lD~~~~-------------~~~~~~-----~~~~~~~~~~~~~G~d--------------------~~---- 416 (641)
.+ ..++.+|.... +.+... .+..++.+++++.|+| ++
T Consensus 389 ~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dFgr~ 468 (581)
T PRK06134 389 QPVRSWLICDHRFLRRYGLGHIRPAPLPLGPYVRSGYLKRGASLEELARACGIDPDGLEATVARYNRHARNGQDPDFGRG 468 (581)
T ss_pred CCccEEEEECHHHHhhcCccccCCCCCChHHHhhCCCEEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 11 12344443210 000000 1223444444443332 11
Q ss_pred ------------------------CCC---eeEeeeeccccCceEeCCCCC------cccCCeeecccccCCCCCCCCc-
Q 006532 417 ------------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR- 462 (641)
Q Consensus 417 ------------------------~~~---i~v~p~~~~~~GGI~vD~~~~------T~ipGLyAaGe~a~~g~~Ga~r- 462 (641)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.++
T Consensus 469 ~~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~y~ 547 (581)
T PRK06134 469 STPYNRKQGDPAHGGPNPCVAPIEHGPFYAVKVLPGCLGTFAGLKTDADARVLDQAGQPIPGLYAAGNDM-ASVMGGFYP 547 (581)
T ss_pred CchhhcccCCcccCCCCcccCcCCCCCeEEEEeeccccccCCCccCCCCCceECCCCCCcCcceeccccc-cccccCCcC
Confidence 122 567788999999999999998 5899999999998 67777654
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhh
Q 006532 463 LASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 463 l~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.+|+++++|++|||+||++|++..
T Consensus 548 ~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 548 SGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CcchhHHHHHHHHHHHHHHHhhcC
Confidence 578999999999999999998754
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=231.05 Aligned_cols=346 Identities=21% Similarity=0.258 Sum_probs=220.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH-
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR- 158 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~- 158 (641)
..+||+|||||+|||+||+.|++.| +|+|+|+++..+-.-..++||-|++.+... +..++...- .+...++
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~p------~~~~fl~s 74 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRNP------GNGHFLKS 74 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhCC------CcchHHHH
Confidence 3589999999999999999999999 999999999877666777888888777666 666654321 1112222
Q ss_pred HHHHHh-HHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 159 VVCTEG-PDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 159 ~~~~~~-~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.+.+.. .+.++|.+.+|+++.....|++. +.....+.++++|..++++ .||+++.++.|.++..
T Consensus 75 al~~ft~~d~i~~~e~~Gi~~~e~~~Gr~F--------------p~sdkA~~Iv~~ll~~~~~-~gV~i~~~~~v~~v~~ 139 (408)
T COG2081 75 ALARFTPEDFIDWVEGLGIALKEEDLGRMF--------------PDSDKASPIVDALLKELEA-LGVTIRTRSRVSSVEK 139 (408)
T ss_pred HHHhCCHHHHHHHHHhcCCeeEEccCceec--------------CCccchHHHHHHHHHHHHH-cCcEEEecceEEeEEe
Confidence 233333 35678999999999877776543 2334577899999999998 5999999999999988
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~ 317 (641)
++++ . .+++.+|+ +|+|+.+||||||-+ ||.+ +.||+|+..|...|..+... .|+.+.-
T Consensus 140 ~~~~-------f-~l~t~~g~--~i~~d~lilAtGG~S--~P~l----Gstg~gy~iA~~~G~~I~~~-----rpalvpf 198 (408)
T COG2081 140 DDSG-------F-RLDTSSGE--TVKCDSLILATGGKS--WPKL----GSTGFGYPIARQFGHTITPL-----RPALVPF 198 (408)
T ss_pred cCce-------E-EEEcCCCC--EEEccEEEEecCCcC--CCCC----CCCchhhHHHHHcCCccccC-----ccccCCc
Confidence 6322 2 23445675 799999999999988 7776 78999999999999988654 3332210
Q ss_pred CCCCCCCCCCCCccceeeccccC---CC--cEEEeCCCCcccccc--ccccccCch-hHHHHHHHHHHHhcCCCeEEEeC
Q 006532 318 EGLPIKPKKTRENSFLITEAVRG---DG--GILYNLGMERFMPLY--DERAELAPR-DVVARSIDDQLKKRNEKYVLLDI 389 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~l~~e~~~~---~g--~~~vn~~G~rf~~~~--~~~~~~~~r-~~~~~~i~~~~~~~~~~~v~lD~ 389 (641)
.-. +| ++ +.+.+ .. ..+.+.+|..|-.+. -..+--.|- -.+|..... ..+.++..+.+|+
T Consensus 199 t~~--~~-------~~--~~l~gls~~~v~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~~-~~~~~~~~i~iDl 266 (408)
T COG2081 199 TLD--ES-------FL--ERLAGLSLKSVPLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWRL-LEKKGGATLSIDL 266 (408)
T ss_pred cCC--HH-------HH--HHhcCCcccceEEEEecCCCceeecceEEEecCCcHHHHHHHHHHHHH-hccCCCceEEEec
Confidence 000 00 00 11111 01 112222222222110 000111111 112333332 3333446788887
Q ss_pred CC-CChhHHHhh-----------------Ch-hH-HHHHHHcCCCCCCC-----------------CeeEee-------e
Q 006532 390 SH-KPTEKILSH-----------------FP-NI-AAECLKYGLDITSQ-----------------PIPVVP-------A 425 (641)
Q Consensus 390 ~~-~~~~~~~~~-----------------~~-~~-~~~~~~~G~d~~~~-----------------~i~v~p-------~ 425 (641)
.. .+.+++... +| .+ .-+++..|+ +++. .+++.| .
T Consensus 267 lP~~~~~~l~~~l~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~ 345 (408)
T COG2081 267 LPDVDAEELLRELRRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYRE 345 (408)
T ss_pred CCCCCHHHHHHHHHhhChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccce
Confidence 63 344433211 11 11 122344566 3210 122332 3
Q ss_pred eccccCceEeC---CC-CC-cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 426 AHYMCGGVRAG---LQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 426 ~~~~~GGI~vD---~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
+..|.|||.++ .+ ++ ..+||||.|||+. .++| ++||.++.+|+++|+.||+.++++.
T Consensus 346 A~VT~GGV~~~eid~kTmesk~vPGLyf~GEvl--Dv~g--~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 346 AEVTAGGVDTKEIDSKTMESKKVPGLYFAGEVL--DVTG--WTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred eEEecCceehhhcCHHHHHhhcCCCcEEEEEEE--Eecc--CCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 56789999854 44 33 4799999999997 7776 6789999999999999999988764
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=237.77 Aligned_cols=340 Identities=22% Similarity=0.268 Sum_probs=183.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
|||+|||||+|||+||+.|++.| +|+|+||+...+-....+++|-|+..+...++..+.... ..++..++...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~------~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGY------GRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-------TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhc------ccchHHHHHHH
Confidence 79999999999999999999999 999999998765433444556666555333333322111 11122222111
Q ss_pred -H-HhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 162 -T-EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 162 -~-~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
. ...+.+.+++++|+++...++|+++ +.......++..|...+++ .||+|+++++|.+|..++
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~~~~~~gr~f--------------P~s~~a~~Vv~~L~~~l~~-~gv~i~~~~~V~~i~~~~ 139 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPTKIEEDGRVF--------------PKSDKASSVVDALLEELKR-LGVEIHFNTRVKSIEKKE 139 (409)
T ss_dssp HHS-HHHHHHHHHHTT--EEE-STTEEE--------------ETT--HHHHHHHHHHHHHH-HT-EEE-S--EEEEEEET
T ss_pred hcCCHHHHHHHHHhcCCeEEEcCCCEEC--------------CCCCcHHHHHHHHHHHHHH-cCCEEEeCCEeeeeeecC
Confidence 1 2245688999999998766666543 2334567899999999988 599999999999999874
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g 319 (641)
+ .+..+.. .+++ .+.|+.|||||||.+ ||.+ +.+|+|+.+|.+.|..++.. .|..+.-.
T Consensus 140 ~----~~f~v~~---~~~~--~~~a~~vILAtGG~S--~p~~----GS~G~gy~~a~~lGh~i~~~-----~PaL~~l~- 198 (409)
T PF03486_consen 140 D----GVFGVKT---KNGG--EYEADAVILATGGKS--YPKT----GSDGSGYRIAKKLGHTITPP-----YPALVPLK- 198 (409)
T ss_dssp T----EEEEEEE---TTTE--EEEESEEEE----SS--SGGG----T-SSHHHHHHHHTT--EEEE-----EEES--EE-
T ss_pred C----ceeEeec---cCcc--cccCCEEEEecCCCC--cccc----CCCcHHHHHHHHCCCcEecC-----CCccCCee-
Confidence 3 4555554 2333 799999999999988 7765 78999999999999988653 34322100
Q ss_pred CCCCCCCCCCccc--eeeccccCCCcE-EEeCCCCccccccccccccC--------c-hhHHHHHHHHHHHhcCCCeEEE
Q 006532 320 LPIKPKKTRENSF--LITEAVRGDGGI-LYNLGMERFMPLYDERAELA--------P-RDVVARSIDDQLKKRNEKYVLL 387 (641)
Q Consensus 320 ~~~~p~~~~~~~~--l~~e~~~~~g~~-~vn~~G~rf~~~~~~~~~~~--------~-r~~~~~~i~~~~~~~~~~~v~l 387 (641)
..+... .-...++-.... ++ ++..-..+ .+|+. | --.+|+.+...+.+.....+.+
T Consensus 199 -------~~~~~~~~~~l~Gv~~~~~~~~~--~~~~~~~~---~GellfT~~GiSGp~il~lS~~~~~~l~~~~~~~i~i 266 (409)
T PF03486_consen 199 -------CDEPWLFFKELSGVRLKAVISLL--DGKKKASE---TGELLFTHYGISGPAILQLSRFIARALNKKKKVEISI 266 (409)
T ss_dssp ---------HHHHHTGGGTT-EEEEEEEEE---ECTCEEE---EEEEEE-SSEEESHHHHHHTTTHHHHHH--TTEEEEE
T ss_pred -------ecchhhhhhhhCCCceeeEEEEe--ccCCccce---eeeEEEECCccchHHHHHHHHHHHHHHHhcCCceEEE
Confidence 000000 000001101111 11 11111111 11111 1 0123444444455555567888
Q ss_pred eCCC-CChhHHHhh--------------------Chh--HHHHHHHcCC-CCCCC-------------------CeeEee
Q 006532 388 DISH-KPTEKILSH--------------------FPN--IAAECLKYGL-DITSQ-------------------PIPVVP 424 (641)
Q Consensus 388 D~~~-~~~~~~~~~--------------------~~~--~~~~~~~~G~-d~~~~-------------------~i~v~p 424 (641)
|+-. .+.+++.+. +|. ...+++..++ ++++. ++++..
T Consensus 267 d~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g 346 (409)
T PF03486_consen 267 DFLPDLSEEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTG 346 (409)
T ss_dssp ESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESE
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecc
Confidence 9863 343333221 121 1234566788 66431 123332
Q ss_pred -----eeccccCceE---eCCC-CC-cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006532 425 -----AAHYMCGGVR---AGLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480 (641)
Q Consensus 425 -----~~~~~~GGI~---vD~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 480 (641)
.+..|.|||. ||.+ ++ ..+||||+|||+. .++| .+||.+|.+|+.+|++||+
T Consensus 347 ~~~~~~A~VT~GGV~~~eid~~TmeSk~~~gLyf~GEvL--DvdG--~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 347 TGGFDKAQVTAGGVDLKEIDPKTMESKLVPGLYFAGEVL--DVDG--PCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp E--TTT-SEEEEEE-GGGB-TTT-BBSSSTTEEE-GGGB--SEEE---TTTHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCcCHHHCCHhhhcccCCCCeEEEEEEE--Eecc--CcCchhHhHHHHHHHHhhC
Confidence 2667899998 4554 44 4699999999997 7776 5789999999999999986
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=203.23 Aligned_cols=259 Identities=21% Similarity=0.236 Sum_probs=175.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC--CCCCccccccCceeeccCC-------CCCHHHHHHHHHHhcc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGA 149 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~--~~~g~s~~a~ggi~~~~~~-------~d~~~~~~~d~~~~g~ 149 (641)
..++||+|||+|.|||.||.++++.| +|+|+|... ..+|...|+-||+..+.+| .|+.+...+|++....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~ 82 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAA 82 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhcccc
Confidence 34689999999999999999999999 999999865 3578888999998776554 4666666777765443
Q ss_pred CC-----CCHHHHHHHHHHh-HHHHHHHHHcCCccccC----CCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHH
Q 006532 150 YL-----CDDETVRVVCTEG-PDRIRELIAIGASFDRG----EDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVV 219 (641)
Q Consensus 150 ~~-----~~~~~~~~~~~~~-~~~i~~l~~~Gv~~~~~----~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~ 219 (641)
+- ....+.+.+.+.+ .+.-.||.+.|+.+... +.|... ...-|.+.+|... .-.+|..++..+.+.++
T Consensus 83 FDRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~-A~ghGNSVPRFHi-TWGTGPgvl~pFvr~~r 160 (552)
T COG3573 83 FDRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSD-AQGHGNSVPRFHI-TWGTGPGVLEPFVRRLR 160 (552)
T ss_pred cCCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcc-cCCCCCCCcceEE-eecCCcchhhHHHHHHH
Confidence 32 2233444444433 45668999999887531 222111 1223456677543 33455555555444443
Q ss_pred c---CCCcEEEcceEEEEEEecCCCCCceEEEEEEEec--------------CCCeEEEEEcCEEEEcCCCCCcC-----
Q 006532 220 S---DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAGHI----- 277 (641)
Q Consensus 220 ~---~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~g~~~~i~Ak~VVlAtGg~~~~----- 277 (641)
+ ..-|++.+.++|..|... ++ +|+||...-. ..|+ +.+.|.+||+++||.++.
T Consensus 161 e~~~~~~v~f~~RHrV~~l~~t-~g---rvtGv~GdVLeps~v~RG~~SSR~~~Gd-Fef~A~aviv~SGGIGGnhelVR 235 (552)
T COG3573 161 EAQRRGRVTFRFRHRVDGLTTT-GG---RVTGVRGDVLEPSDVERGQPSSREVVGD-FEFSASAVIVASGGIGGNHELVR 235 (552)
T ss_pred HHHhCCceEEEeeeeccceEee-CC---eEeeecccccCCCccccCCCccceeecc-eEEeeeeEEEecCCcCCCHHHHH
Confidence 3 468999999999999987 56 8888864211 1232 579999999999999873
Q ss_pred --CC-----------CCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccceeeccccCCCcE
Q 006532 278 --YP-----------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGI 344 (641)
Q Consensus 278 --~~-----------~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~ 344 (641)
|| .+..|....|-.+.++..+|+.++|.+-+..+-..+.+. .|++|.+ .. ..+.|+...
T Consensus 236 rnWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHYtEGirNw-dPiWp~H----gI---RIlPGPSSl 307 (552)
T COG3573 236 RNWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHYTEGIRNW-DPIWPNH----GI---RILPGPSSL 307 (552)
T ss_pred hcCchhhcCCChHHHhcCCcccccchhHHHHHHhCCceeccccceehhhccccC-CCcCccc----ce---eeccCCcce
Confidence 44 123345577888899999999999998776555555443 3556643 22 234567788
Q ss_pred EEeCCCCcc
Q 006532 345 LYNLGMERF 353 (641)
Q Consensus 345 ~vn~~G~rf 353 (641)
+++..|+|+
T Consensus 308 WlDa~G~RL 316 (552)
T COG3573 308 WLDAAGKRL 316 (552)
T ss_pred eECCCCCcC
Confidence 999999985
|
|
| >PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-25 Score=195.00 Aligned_cols=99 Identities=40% Similarity=0.657 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 006532 524 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL 602 (641)
Q Consensus 524 ~~~l~~~m~~~~g~~R~~~~L~~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~ 602 (641)
+++||++||+++||+|++++|++|+++|++|++++.++.+. .....++++.+++|++||+++|++++.|||.|+||||+
T Consensus 1 r~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~ 80 (129)
T PF02910_consen 1 REELQEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAKAALARKESRGA 80 (129)
T ss_dssp HHHHHHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHHHHHHS-SEBTT
T ss_pred CHHHHHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCccc
Confidence 57899999999999999999999999999999988643322 22345788899999999999999999999999999999
Q ss_pred ccccCCCCCccCCCCCeeec
Q 006532 603 HYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 603 h~R~D~P~~d~~~~~~~~~~ 622 (641)
|||.|||++||++|.+++++
T Consensus 81 H~R~D~P~~~d~~~~~~~~~ 100 (129)
T PF02910_consen 81 HYREDYPERDDENWLKHIIV 100 (129)
T ss_dssp BEBTTSSSCETTTCSEEEEE
T ss_pred chhccccccccccccEEEEE
Confidence 99999999988877777654
|
3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A .... |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=207.88 Aligned_cols=339 Identities=21% Similarity=0.262 Sum_probs=202.4
Q ss_pred EEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHH--
Q 006532 86 SVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT-- 162 (641)
Q Consensus 86 lVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~-- 162 (641)
+|||||+||++||+.|++.| +|+|+||....++....+++|.+...+..+. ..++... ..++..++....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~-~~~~~~~------~~~~~~~~~~l~~~ 73 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPT-PEFVAYY------PRNGKFLRSALSRF 73 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcc-hhHHHhc------CCCcHHHHHHHHhC
Confidence 59999999999999999999 9999999987766655566666655443322 2222111 112232222221
Q ss_pred HhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006532 163 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 242 (641)
Q Consensus 163 ~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 242 (641)
...+.++|+.++|+++.....|.+. +.......+...|.+.+++ .|++++.++.|+++..+ ++
T Consensus 74 ~~~d~~~~~~~~Gv~~~~~~~g~~~--------------p~~~~a~~v~~~L~~~l~~-~gv~i~~~~~V~~i~~~-~~- 136 (400)
T TIGR00275 74 SNKDLIDFFESLGLELKVEEDGRVF--------------PCSDSAADVLDALLNELKE-LGVEILTNSKVKSIKKD-DN- 136 (400)
T ss_pred CHHHHHHHHHHcCCeeEEecCCEeE--------------CCCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEec-CC-
Confidence 2456778999999988754444321 1223456788889988887 59999999999999764 33
Q ss_pred CceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCC
Q 006532 243 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 322 (641)
Q Consensus 243 ~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~ 322 (641)
...+.. +++ .+.|+.||+|||+++ |+.. +++|+|+.++.++|+.+.. .+|..+.-.-.
T Consensus 137 ---~~~v~~----~~~--~i~ad~VIlAtG~~s--~p~~----gs~G~g~~la~~lG~~i~~-----~~P~l~~l~~~-- 194 (400)
T TIGR00275 137 ---GFGVET----SGG--EYEADKVILATGGLS--YPQL----GSTGDGYEIAESLGHTIVP-----PVPALVPLTLD-- 194 (400)
T ss_pred ---eEEEEE----CCc--EEEcCEEEECCCCcc--cCCC----CCCcHHHHHHHHCCCCEec-----ccceEeEEEeC--
Confidence 223332 233 589999999999987 5543 7899999999999998763 34443321000
Q ss_pred CCCCCCCccceeeccccCCCcEEEeCCCCcccccccc-----ccccCch-hHHHHHHHHHHHhcCCCeEEEeCCC-CChh
Q 006532 323 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-----RAELAPR-DVVARSIDDQLKKRNEKYVLLDISH-KPTE 395 (641)
Q Consensus 323 ~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~-----~~~~~~r-~~~~~~i~~~~~~~~~~~v~lD~~~-~~~~ 395 (641)
.| .......++-...+.+..+|++|.++..+ .+-..|. -.+++.+.+.+..+....+.+|+-. .+.+
T Consensus 195 ~~------~~~~l~Gv~~~~~~~~~~~~~~~~~~~g~llft~~gisG~~vl~~s~~~~~~~~~~~~~~~~id~~p~~~~~ 268 (400)
T TIGR00275 195 ES------FLKELSGISLDGVVLSLVNGKKVLEEFGDLLFTHFGLSGPAILDLSAFAARALLKHKGVELEIDLLPDLSEE 268 (400)
T ss_pred Cc------ccccCCCCcCccEEEEecCCcEEEeecccEEEECCCcCHHHHHHHHHHHHHHhhcCCCcEEEEEcCCCCCHH
Confidence 00 00000111111222233445555432111 0000111 1134433333332333568888864 3343
Q ss_pred HHHhh--------------------Chh--HHHHHHHcCCCCCCC-------------------CeeEee-----eeccc
Q 006532 396 KILSH--------------------FPN--IAAECLKYGLDITSQ-------------------PIPVVP-----AAHYM 429 (641)
Q Consensus 396 ~~~~~--------------------~~~--~~~~~~~~G~d~~~~-------------------~i~v~p-----~~~~~ 429 (641)
++... +|. +..+++..|+++++. ++++.. .+..|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt 348 (400)
T TIGR00275 269 ELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVT 348 (400)
T ss_pred HHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEe
Confidence 33211 111 123345568876532 123322 36679
Q ss_pred cCceEe---CCC-CC-cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHH
Q 006532 430 CGGVRA---GLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480 (641)
Q Consensus 430 ~GGI~v---D~~-~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~ 480 (641)
.|||.+ |.+ ++ ..+||||.|||+. .+.| .+||.+|.+|+.+|+.||+
T Consensus 349 ~GGv~~~ei~~~~m~~k~~~gly~~GE~l--Dv~g--~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 349 AGGVSLKEINPKTMESKLVPGLYFAGEVL--DVDG--DTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred cCcccchhcChhhhhhcCCCCeEEEEEEE--ecCC--CCCchHHHHHHHHHHHhcC
Confidence 999975 443 44 4699999999997 6766 5789999999999999973
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-19 Score=187.18 Aligned_cols=309 Identities=19% Similarity=0.240 Sum_probs=168.4
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
+.+|||+|||+|+||..||++|++.| +|+|+|+... -|+++.+.|.| |....
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~-lGGtCln~GCI--------------------------PsK~L 54 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER-LGGTCLNVGCI--------------------------PSKAL 54 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCC-cCceEEeeCcc--------------------------ccHHH
Confidence 35799999999999999999999999 9999999963 35555555544 44433
Q ss_pred HHHHHhHHHHHHHH-HcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 159 VVCTEGPDRIRELI-AIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 159 ~~~~~~~~~i~~l~-~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
....+....+.... .+|+..... .+. +..+....+.....+...+. .+.+..||+++.++- .+ .
T Consensus 55 l~~a~~~~~~~~~~~~~Gi~~~~~---~id--------~~~~~~~k~~v~~~~~~~~~-~l~~~~~V~vi~G~a--~f-~ 119 (454)
T COG1249 55 LHAAEVIEEARHAAKEYGISAEVP---KID--------FEKLLARKDKVVRLLTGGVE-GLLKKNGVDVIRGEA--RF-V 119 (454)
T ss_pred HHHHHHHHHHhhcccccceecCCC---CcC--------HHHHHHHHHHHHHHHhhhHH-HHHhhCCCEEEEEEE--EE-C
Confidence 33333323333332 355554421 111 00110001111111222222 333335999998852 23 2
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCC--CCCCcccCccchhHHHHh-------cCCeeeccccc
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP--STTNPLVATGDGMAMAHR-------AQAVISNMEFV 308 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~--~~~~~~~~~Gdg~~~a~~-------aGa~l~~~e~~ 308 (641)
+ ++ +| .+.. . +..+++|+.+|+|||+.+...+ ...+....+.++.....+ +|+..+.+||.
T Consensus 120 ~-~~---~v---~V~~-~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a 189 (454)
T COG1249 120 D-PH---TV---EVTG-E--DKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFA 189 (454)
T ss_pred C-CC---EE---EEcC-C--CceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHH
Confidence 2 22 22 2221 1 3347999999999999887655 333333444545333333 57888888888
Q ss_pred cccceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEe
Q 006532 309 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLD 388 (641)
Q Consensus 309 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD 388 (641)
+.+-.. | + -+.+-..+.++++.+++. +++.+.+.+.+++ -.++.+
T Consensus 190 ~~~~~L----G---------------~-------~VTiie~~~~iLp~~D~e--------i~~~~~~~l~~~g-v~i~~~ 234 (454)
T COG1249 190 SVFAAL----G---------------S-------KVTVVERGDRILPGEDPE--------ISKELTKQLEKGG-VKILLN 234 (454)
T ss_pred HHHHHc----C---------------C-------cEEEEecCCCCCCcCCHH--------HHHHHHHHHHhCC-eEEEcc
Confidence 765221 0 1 134445667787755543 6666666666632 222221
Q ss_pred CCCC----ChhHHHhh-------ChhHHHHHHHcCCCCCCCCe--eEeeeeccccCceEeCCCCCcccCCeeecccccCC
Q 006532 389 ISHK----PTEKILSH-------FPNIAAECLKYGLDITSQPI--PVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACT 455 (641)
Q Consensus 389 ~~~~----~~~~~~~~-------~~~~~~~~~~~G~d~~~~~i--~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~ 455 (641)
.... ..+.+.-. .-..+.++...|..|+.+.+ +-..-.....|+|.||..++|++||+||+|||+ +
T Consensus 235 ~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~-~ 313 (454)
T COG1249 235 TKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVI-G 313 (454)
T ss_pred ceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccC-C
Confidence 1100 00000000 00122334455666665532 211222233489999977888899999999997 3
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 456 g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
+.. |+.. |.-.|++|+++++.
T Consensus 314 ~~~----Lah~----A~~eg~iaa~~i~g 334 (454)
T COG1249 314 GPM----LAHV----AMAEGRIAAENIAG 334 (454)
T ss_pred Ccc----cHhH----HHHHHHHHHHHHhC
Confidence 432 3333 45568888888875
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=196.31 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=89.0
Q ss_pred eeccccccccccccccccccccccccccCCCccccccccccCCCCChhHhHhhhcccCc-------c--ccCCCCccccc
Q 006532 13 HFGGIRCKGQSCQQASLVSSLTFNGCIQRELSWFLRFQRFNFSHSPVSENWKSLRTVPV-------L--SCLRDGSVKYF 83 (641)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~ 83 (641)
-++|+...+|+.|++..++..+++++.+++++.+|||++++||+..|...|+++.+..+ . +...+.....+
T Consensus 85 ~~~gm~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~ir~~ag~g~~~~~~~p~~~~~~~~~~ 164 (985)
T TIGR01372 85 LYDGLVATSQNRWPSLAFDIGAFNDLFAPLLSAGFYYKTFMWPAAFWWKIYEPFIRRAAGLGVADTETDPDTYDKVNAHC 164 (985)
T ss_pred cccCCEEecccCCCccccchhhhhhhhhhcccccccccccCCcHHHHHHHhhHHhHHhccCCcCCCCCCCccchhhcccC
Confidence 38899999999999999999999999999999999999999999888888888766532 0 00111112468
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
||+|||||+|||+||+.|++.| +|+|+|+....+|
T Consensus 165 dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG 200 (985)
T TIGR01372 165 DVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG 200 (985)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 9999999999999999999999 9999999876654
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-15 Score=156.32 Aligned_cols=323 Identities=15% Similarity=0.097 Sum_probs=186.6
Q ss_pred CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHH--hHHHHHHHHHcCCccccCCC
Q 006532 106 TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTE--GPDRIRELIAIGASFDRGED 183 (641)
Q Consensus 106 ~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~~--~~~~i~~l~~~Gv~~~~~~~ 183 (641)
+|+|+||....+-.-...+||-|++.+.... ..++. .+..+++.++..... ..+.++|++++|+++..+++
T Consensus 3 ~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~-~~~~~------~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~ 75 (376)
T TIGR03862 3 EVDVFEAKPSVGRKFLMAGKSGLNLTHSEPL-PRFIE------RYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSS 75 (376)
T ss_pred eEEEEeCCCCccceeEEcCCCCcccCCCCch-HHHHH------hcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCC
Confidence 7999999987766556666777777664332 22221 122344444433322 24667999999999887777
Q ss_pred CCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEE
Q 006532 184 GNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI 263 (641)
Q Consensus 184 g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~ 263 (641)
|+++ +.......++.+|...+++ .||+|+.++.|++| + ++ . .++.. .++. ..++
T Consensus 76 grvf--------------P~S~~A~sVv~~L~~~l~~-~gV~i~~~~~V~~i--~-~~---~-~~v~~---~~~~-~~~~ 129 (376)
T TIGR03862 76 GRVF--------------PVEMKAAPLLRAWLKRLAE-QGVQFHTRHRWIGW--Q-GG---T-LRFET---PDGQ-STIE 129 (376)
T ss_pred CEEC--------------CCCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEE--e-CC---c-EEEEE---CCCc-eEEe
Confidence 7644 2344577899999999988 59999999999998 3 22 2 23332 2222 2589
Q ss_pred cCEEEEcCCCCCcCCCCCCCcccCccchhHHHHhcCCeeeccccccccceeecCCCCCCCCCCCCCccce-eeccccCCC
Q 006532 264 SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFL-ITEAVRGDG 342 (641)
Q Consensus 264 Ak~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e~~q~~p~~~~~~g~~~~p~~~~~~~~l-~~e~~~~~g 342 (641)
|++||+||||.+ ||.+ +.+|+|+.+|.+.|..++.. +|..+.-.-. .+. .+. ....++-..
T Consensus 130 a~~vIlAtGG~s--~p~~----Gs~g~gy~la~~lGh~i~~~-----~PaL~pl~~~--~~~-----~~~~~L~Gv~~~~ 191 (376)
T TIGR03862 130 ADAVVLALGGAS--WSQL----GSDGAWQQVLDQRGVSVAPF-----APANCGFLVD--WSA-----HFASRFAGEPLKR 191 (376)
T ss_pred cCEEEEcCCCcc--cccc----CCCcHHHHHHHHCCCcccCC-----cCeeceEEcc--Cch-----hhHhhcCCCcccc
Confidence 999999999988 7765 67999999999999988653 4443211000 000 000 000111111
Q ss_pred cEE-EeC---CCCccccccccccccCch-hHHHHHHHHHHHhcCCCeEEEeCCC-CChhHHHhh----Ch--hHHHHHH-
Q 006532 343 GIL-YNL---GMERFMPLYDERAELAPR-DVVARSIDDQLKKRNEKYVLLDISH-KPTEKILSH----FP--NIAAECL- 409 (641)
Q Consensus 343 ~~~-vn~---~G~rf~~~~~~~~~~~~r-~~~~~~i~~~~~~~~~~~v~lD~~~-~~~~~~~~~----~~--~~~~~~~- 409 (641)
..+ ++. .|+-....|. --.|- -.+|+.+...+.......+.+|+-. .+.+++.+. .+ ++...+.
T Consensus 192 ~~~~~~~~~~~GellFTh~G---iSGpavl~lS~~~~~~~~~~~~~~i~idf~P~~~~~~l~~~l~~~~~~k~l~~~L~~ 268 (376)
T TIGR03862 192 VNATAGTQQTRGEIVITARG---LEGGLIYALSAALREQIKAGGSANLFLDLLPDLSLEQVTKRLAAPRGKQSLSNHLRK 268 (376)
T ss_pred eEEEeCCeeEeeeEEEECCC---ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHhhcccchHHHHHHH
Confidence 111 110 1111111111 00010 1234444333333333447888853 334443321 11 1111111
Q ss_pred HcCCCCC-------------------------CCCeeEee-----eeccccCceE---eCCCCCc-ccCCeeecccccCC
Q 006532 410 KYGLDIT-------------------------SQPIPVVP-----AAHYMCGGVR---AGLQGET-NVRGLYVAGEVACT 455 (641)
Q Consensus 410 ~~G~d~~-------------------------~~~i~v~p-----~~~~~~GGI~---vD~~~~T-~ipGLyAaGe~a~~ 455 (641)
..|+++. .-++++.. .+..|.|||. ||..++. .+||||.|||+.
T Consensus 269 ~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~EI~~~~~Sk~~pgLYf~GEvL-- 346 (376)
T TIGR03862 269 ALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDALDESLMLKARPGVFCAGEML-- 346 (376)
T ss_pred HhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHHcChhhhcccCCCeEEEEEEE--
Confidence 1122210 01223322 3667999997 5656663 599999999997
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 456 g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.+.| .+||.+|.+||.+|++||++++.++
T Consensus 347 DvdG--~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 347 DWEA--PTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred eecc--CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 6766 5789999999999999999988764
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-16 Score=169.65 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=35.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
+|||+|||||+||+.||+.|++.| +|+|+||..+ |+++.+.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~--GG~c~~~gc 45 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKL--GGTCVNVGC 45 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccc--ccceeccCc
Confidence 589999999999999999999999 9999999753 444444443
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=171.95 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=38.9
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
...+|||+|||||+||+.||+.|++.| +|+||||..+ |+++.+.|.+
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~--GGtCln~GCi 92 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYL--GGTCVNVGCV 92 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccc--cccccccCCC
Confidence 346799999999999999999999999 9999999743 5555555544
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=168.18 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=79.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
+|||+|||||+||+.||+.|++.| +|+|+||..+ |+++.+.| |.|......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~--GG~c~~~g--------------------------ciPsk~l~~ 53 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRV--GGTCVIRG--------------------------CVPKKLMVY 53 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCcc--CceeecCC--------------------------cCchHHHHH
Confidence 599999999999999999999999 9999999643 33444444 334443333
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
..+....++....+|+..... .+. +.......+..-..+...+.+.+.+ .||+++.+ .+..+. .+
T Consensus 54 ~a~~~~~~~~~~~~g~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~g-~~~~v~--~~ 118 (446)
T TIGR01424 54 GSTFGGEFEDAAGYGWTVGKA---RFD--------WKKLLQKKDDEIARLSGLYKRLLAN-AGVELLEG-RARLVG--PN 118 (446)
T ss_pred HHHHHHHHhhhHhcCcCCCCC---CcC--------HHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEE-EEEEec--CC
Confidence 333333344444555543210 000 0000000000111233344445555 59999877 454432 12
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+ .+. .+|+ .+.+++||+|||+...
T Consensus 119 ----~v---~v~--~~g~--~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 119 ----TV---EVL--QDGT--TYTAKKILIAVGGRPQ 143 (446)
T ss_pred ----EE---EEe--cCCe--EEEcCEEEEecCCcCC
Confidence 22 221 2343 5899999999998764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=171.38 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=83.3
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC--------CCCCccccccCceeeccCCCCCHHHHHHHHHHhccC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--------PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~--------~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~ 150 (641)
..+|||+|||+|++|+.||+.|++.| +|+|+|+.. -.-|+++.+.|
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~G------------------------- 131 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRG------------------------- 131 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcc-------------------------
Confidence 45699999999999999999999999 999999621 11134444433
Q ss_pred CCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
|.|........+....++....+|+.+..... +. +..+....+..-..+...+.+.+++ .||+++.+.
T Consensus 132 -CiPsK~l~~aa~~~~~~~~~~~~g~~~~~~~~--~d--------~~~~~~~k~~~~~~l~~~~~~~l~~-~gV~~i~G~ 199 (558)
T PLN02546 132 -CVPKKLLVYASKYSHEFEESRGFGWKYETEPK--HD--------WNTLIANKNAELQRLTGIYKNILKN-AGVTLIEGR 199 (558)
T ss_pred -hHHHHHHHHHHHHHHHHHhhhhcCcccCCCCC--CC--------HHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeE
Confidence 55666555555555555555566765421110 11 1111100111111233344444554 599998763
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++.+ + .. .+ .+ +|+ .+.++.||||||+...
T Consensus 200 -a~~v--d-~~---~V---~v----~G~--~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 200 -GKIV--D-PH---TV---DV----DGK--LYTARNILIAVGGRPF 229 (558)
T ss_pred -EEEc--c-CC---EE---EE----CCE--EEECCEEEEeCCCCCC
Confidence 3322 2 11 22 22 344 5899999999998764
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=167.04 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=82.0
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC--CCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~--~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
..+|||+|||||+||+.||+.|++.| +|+|+|+.. ...+. ...-||.|...+ |.|..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~-~~~~GGtc~n~G-------------------ciPsK 82 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSES-IGGVGGTCVIRG-------------------CVPKK 82 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc-CCCccceeeccC-------------------chhHH
Confidence 45799999999999999999999999 999999721 11100 001233332221 44544
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
...........+....++|+++.... .+. +..........-..+...+.+.+.. .||+++.+ .+..+
T Consensus 83 ~l~~~a~~~~~~~~~~~~G~~~~~~~--~id--------~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~i~g-~a~~v- 149 (499)
T PLN02507 83 ILVYGATFGGEFEDAKNYGWEINEKV--DFN--------WKKLLQKKTDEILRLNGIYKRLLAN-AGVKLYEG-EGKIV- 149 (499)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCC--ccC--------HHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEE-EEEEe-
Confidence 44333333344455566676542110 010 0000000000001122222233333 58999887 34433
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+.+ . +.+. ..+|+...+.+|.||||||+...
T Consensus 150 -d~~----~---v~V~-~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 150 -GPN----E---VEVT-QLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred -cCC----E---EEEE-eCCCcEEEEEcCEEEEecCCCCC
Confidence 222 1 2222 23566667999999999998664
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=165.43 Aligned_cols=33 Identities=42% Similarity=0.523 Sum_probs=30.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhc-C-CeEEEEec
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKA 113 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llek~ 113 (641)
.+|||+|||||++|..||+.|++. | +|+||||.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999997 8 99999984
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=165.19 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=36.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
.+|||+|||||+||+.||..|++.| +|+|+|+....+ +++.+.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~G-G~c~n~gc 48 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLG-GVCLNVGC 48 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccc-ccccCCCc
Confidence 3599999999999999999999999 999999975443 34444443
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=163.70 Aligned_cols=155 Identities=16% Similarity=0.206 Sum_probs=82.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
+|||+|||+|+||+.||+.|++.| +|+|||+.....+.+.+..||.|...+ |.|......
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~G-------------------CiPsK~l~~ 62 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVG-------------------CIPKKLMHQ 62 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccC-------------------cCchhHHHH
Confidence 589999999999999999999999 999999854322222223455554332 444443332
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
..+..........+|+.+..... +. +.......+..-..+.......+++ .||+++.+.- .+ .+ .
T Consensus 63 ~a~~~~~~~~~~~~g~~~~~~~~--~d--------~~~~~~~~~~~v~~~~~~~~~~~~~-~~v~~i~G~a--~f-~~-~ 127 (484)
T TIGR01438 63 AALLGQALKDSRNYGWNVEETVK--HD--------WNRLSEAVQNHIGSLNWGYRVALRE-KKVNYENAYA--EF-VD-K 127 (484)
T ss_pred HHHHHHHHhhhhhcCcccCCCcc--cC--------HHHHHHHHHHHHHHHHHHHHHHHhh-CCcEEEEEEE--EE-cC-C
Confidence 22222222333445654431100 00 0000000000011122223333444 5999998742 22 23 2
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
. . +.+.+ .+|+...+.++.||+|||+....
T Consensus 128 ~---~---v~v~~-~~g~~~~~~~d~lVIATGs~p~~ 157 (484)
T TIGR01438 128 H---R---IKATN-KKGKEKIYSAERFLIATGERPRY 157 (484)
T ss_pred C---E---EEEec-cCCCceEEEeCEEEEecCCCCCC
Confidence 2 2 23322 24444579999999999987643
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-15 Score=163.04 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=35.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|||+||||||||+.||+.|++.| +|+|||+....|| ++.+.|.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG-~c~~~gci 48 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG-TCLNVGCM 48 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee-eeccCccc
Confidence 589999999999999999999999 9999997543333 34444433
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=148.56 Aligned_cols=145 Identities=23% Similarity=0.323 Sum_probs=98.9
Q ss_pred ccccccEEEECccHHHHHHHHHHHhc-C-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
...++||+|||+|++|++||+.|++. | +|+||||....+|+.. ..|.+ .+.-
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~-~gg~l------------------------~~~~- 142 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW-LGGQL------------------------FSAM- 142 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee-eCccc------------------------cccc-
Confidence 34579999999999999999999986 7 9999999876654322 11111 0000
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
.++. ...++++++|++|++. ++ +.. .. ....+...|.+++.++.|+++++++.+++|+
T Consensus 143 ---vv~~--~a~e~LeElGV~fd~~-dg-y~v----------v~-----ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI 200 (357)
T PLN02661 143 ---VVRK--PAHLFLDELGVPYDEQ-EN-YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLI 200 (357)
T ss_pred ---cccc--HHHHHHHHcCCCcccC-CC-eeE----------ec-----chHHHHHHHHHHHHhcCCCEEEeCeEeeeEE
Confidence 0111 1245788899998653 21 211 11 1235667888877766799999999999999
Q ss_pred ecCCCCCceEEEEEEE------ecCC---CeEEEEEcCEEEEcCCCCC
Q 006532 237 TTLDGPDAVCHGVDTL------NVET---QEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~------~~~~---g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+ ++ +|.|+++. +..+ .+...|+||+||+|||+.+
T Consensus 201 ~~-~g---rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 201 VK-GD---RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred ec-CC---EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 87 55 89999863 1112 1345799999999999544
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=162.12 Aligned_cols=43 Identities=35% Similarity=0.453 Sum_probs=35.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g 125 (641)
.+|||+|||||+||+.||+.|++.| +|+|+|+... |+++.+.|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~--GG~c~n~g 46 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRL--GGTCVNVG 46 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccch--hhhhhccC
Confidence 3699999999999999999999999 9999999743 33434444
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=158.72 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=32.9
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
+.+|||+|||||+||+.||+.|++.| +|+|+||...
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~ 39 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL 39 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 34699999999999999999999999 9999999754
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=140.91 Aligned_cols=286 Identities=20% Similarity=0.293 Sum_probs=155.8
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
..+||.+|||||..|+++|.++++.| +|.|+|...-. |+++.+.| |-|..+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l-GGTCVn~G--------------------------CVPKKvm 70 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL-GGTCVNVG--------------------------CVPKKVM 70 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc-CceEEeec--------------------------cccceeE
Confidence 45899999999999999999999999 99999986433 33444434 4455555
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.++....+.++...++|.+.... +.+. |+.+..-.+. --.-...+++...++.+|+++++.- .+. +
T Consensus 71 ~~~a~~~~~~~da~~yG~~~~~~--~~fd--------W~~ik~krda-yi~RLngIY~~~L~k~~V~~i~G~a--~f~-~ 136 (478)
T KOG0405|consen 71 WYAADYSEEMEDAKDYGFPINEE--GSFD--------WKVIKQKRDA-YILRLNGIYKRNLAKAAVKLIEGRA--RFV-S 136 (478)
T ss_pred EehhhhhHHhhhhhhcCCccccc--cCCc--------HHHHHhhhhH-HHHHHHHHHHhhccccceeEEeeeE--EEc-C
Confidence 55555555566666777766422 2221 1111100010 0011245566655556899888752 232 2
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCCC-CcccCccchhHHHHh-------cCCeeeccccccc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT-NPLVATGDGMAMAHR-------AQAVISNMEFVQF 310 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~-~~~~~~Gdg~~~a~~-------aGa~l~~~e~~q~ 310 (641)
++ .| -| +..+|+...+.|+.+++||||.+. +|+-. .....+.||+.-..+ .||.++..||...
T Consensus 137 -~~---~v-~V---~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi 207 (478)
T KOG0405|consen 137 -PG---EV-EV---EVNDGTKIVYTAKHILIATGGRPI-IPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGI 207 (478)
T ss_pred -CC---ce-EE---EecCCeeEEEecceEEEEeCCccC-CCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhH
Confidence 33 22 12 334676677999999999999873 34211 122456677655544 4666666665443
Q ss_pred cceeecCCCCCCCCCCCCCccceeeccccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCCeEEEeCC
Q 006532 311 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDIS 390 (641)
Q Consensus 311 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~v~lD~~ 390 (641)
+.. .| ++ -.++ -..+.++..+++ .++..+.+++...+ +-+.-.
T Consensus 208 ~~g----Lg---------------se------thlf-iR~~kvLR~FD~--------~i~~~v~~~~~~~g---invh~~ 250 (478)
T KOG0405|consen 208 FAG----LG---------------SE------THLF-IRQEKVLRGFDE--------MISDLVTEHLEGRG---INVHKN 250 (478)
T ss_pred Hhh----cC---------------Ce------eEEE-EecchhhcchhH--------HHHHHHHHHhhhcc---eeeccc
Confidence 211 00 00 0111 112334444433 24444455554432 111110
Q ss_pred CCChhHHH-------------hhChhHHHHHHHcCCCCCCCCee--EeeeeccccCceEeCCCCCcccCCeeeccccc
Q 006532 391 HKPTEKIL-------------SHFPNIAAECLKYGLDITSQPIP--VVPAAHYMCGGVRAGLQGETNVRGLYVAGEVA 453 (641)
Q Consensus 391 ~~~~~~~~-------------~~~~~~~~~~~~~G~d~~~~~i~--v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a 453 (641)
... .++. ..++.++.++...|.+|....+. -...-....|-|.||+..+|+||++||+||++
T Consensus 251 s~~-~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~ 327 (478)
T KOG0405|consen 251 SSV-TKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVT 327 (478)
T ss_pred ccc-eeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecccc
Confidence 000 0000 11223344455667777654322 22223345688999999999999999999996
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=148.04 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=75.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-C-eEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
..+||+|||||||||+||+.+++.+ + ++|+|+.... |...... -+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g-g~~~~~~-~v------------------------------- 48 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-GQLTKTT-DV------------------------------- 48 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC-Cccccce-ee-------------------------------
Confidence 4689999999999999999999999 8 6777776542 2111100 00
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+++- +.....|..+...+.+++.. .++++.. ..|..+...
T Consensus 49 ---------------enypg----------------------~~~~~~g~~L~~~~~~~a~~-~~~~~~~-~~v~~v~~~ 89 (305)
T COG0492 49 ---------------ENYPG----------------------FPGGILGPELMEQMKEQAEK-FGVEIVE-DEVEKVELE 89 (305)
T ss_pred ---------------cCCCC----------------------CccCCchHHHHHHHHHHHhh-cCeEEEE-EEEEEEeec
Confidence 00000 01234577888888888876 6999888 566666543
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCC
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 278 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 278 (641)
++ .....+.+++ ++||.||+|||...+..
T Consensus 90 ~~--------~F~v~t~~~~---~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 90 GG--------PFKVKTDKGT---YEAKAVIIATGAGARKL 118 (305)
T ss_pred Cc--------eEEEEECCCe---EEEeEEEECcCCcccCC
Confidence 11 1222334453 99999999999877543
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=156.05 Aligned_cols=31 Identities=42% Similarity=0.620 Sum_probs=30.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEe
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITK 112 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek 112 (641)
+|||+|||||+||++||+.|++.| +|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 699999999999999999999999 9999998
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-14 Score=153.79 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.1
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
...|||+|||||+||+.||+.|++.| +|+|+|++.+ |+++.+.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~--GGtc~n~Gc 49 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI--GGTCVNIGC 49 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc--ccceecCCc
Confidence 45799999999999999999999999 9999999753 334445443
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=157.16 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=32.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.+|||+|||||+||+.||+.|++.| +|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4699999999999999999999999 999999977
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=156.44 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=36.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
..|||+|||||+||+.||+.|++.| +|+|+|+..+ |+++.+.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~--GG~c~~~gc 47 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL--GGTCLHKGC 47 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CcceEcCCc
Confidence 3699999999999999999999999 9999999743 444444443
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=155.85 Aligned_cols=40 Identities=40% Similarity=0.490 Sum_probs=35.0
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
+..|||+|||||+||+.||+.|++.| +|+|+||....||.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~ 43 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 43 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc
Confidence 34699999999999999999999999 99999997655443
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=155.17 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=36.0
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|||+|||||+||+.||+.|++.| +|+|+|++.. |+++.+.|.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~--GG~c~~~gci 48 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW--GGVCLNVGCI 48 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC--CCceecCCcc
Confidence 589999999999999999999999 9999999754 3344444433
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-14 Score=140.29 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=102.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.++||+|||||+||++||+.|++.| +|+|+||....+|.. + .||.. .+...+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~-~-~gg~~-----------------------~~~~~v-- 76 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM-W-GGGML-----------------------FNKIVV-- 76 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-c-cCccc-----------------------cccccc--
Confidence 4689999999999999999999999 999999987665432 1 12210 000000
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
..+..+++.++|++|....++.+ . ..+..+...|.+.+.+ .|+++++++.|+++..++
T Consensus 77 ----~~~~~~~l~~~gv~~~~~~~g~~---------------~--vd~~~l~~~L~~~A~~-~Gv~I~~~t~V~dl~~~~ 134 (257)
T PRK04176 77 ----QEEADEILDEFGIRYKEVEDGLY---------------V--ADSVEAAAKLAAAAID-AGAKIFNGVSVEDVILRE 134 (257)
T ss_pred ----hHHHHHHHHHCCCCceeecCcce---------------e--ccHHHHHHHHHHHHHH-cCCEEEcCceeceeeEeC
Confidence 11346778889998865333211 1 1246788889988887 599999999999998765
Q ss_pred CCCCceEEEEEEEecC------CCeEEEEEcCEEEEcCCCCCc
Q 006532 240 DGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++ +|.|+++.... +.+...|+|+.||+|||+.+.
T Consensus 135 ~g---~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 135 DP---RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred CC---cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 55 78898875321 123468999999999997773
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-14 Score=153.62 Aligned_cols=45 Identities=31% Similarity=0.404 Sum_probs=36.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
.|||+|||||+||+.||+.|++.| +|+|+|+.+..-|+++.+.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gc 48 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGC 48 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccc
Confidence 589999999999999999999999 999999976433444444443
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-14 Score=152.05 Aligned_cols=148 Identities=15% Similarity=0.153 Sum_probs=80.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 162 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~ 162 (641)
||+|||+|++|+.||..|++.| +|+|+||... |+++.+.|. .|........
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~--gG~c~~~gc--------------------------iPsK~l~~~a 54 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGL--GGAAVLTDC--------------------------VPSKTLIATA 54 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CCcccccCC--------------------------cchHHHHHHH
Confidence 8999999999999999999999 9999999764 333333332 2333222222
Q ss_pred HhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE--ecCC
Q 006532 163 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL--TTLD 240 (641)
Q Consensus 163 ~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~--~~~~ 240 (641)
+....+.....+|+.........+. +.......+..-..+...+.+.+++ .||+++.+. +..+. .+ .
T Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~~~~g~-~~~~~~~~~-~ 123 (466)
T PRK07845 55 EVRTELRRAAELGIRFIDDGEARVD--------LPAVNARVKALAAAQSADIRARLER-EGVRVIAGR-GRLIDPGLG-P 123 (466)
T ss_pred HHHHHHHHHHhCCcccccCcccccC--------HHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEE-EEEeecccC-C
Confidence 2233344455666653200000000 0000000000011122334455655 599999885 33222 22 2
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
. + +.+. ..+|+...+.++.||+|||+....
T Consensus 124 ~---~---v~V~-~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 124 H---R---VKVT-TADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred C---E---EEEE-eCCCceEEEecCEEEEcCCCCCCC
Confidence 2 2 2222 234554568999999999987753
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-14 Score=157.29 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=75.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
...+||+|||||+||++||+.|++.| +|+|++.. .+|..... -++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~-~~~------------------------------- 255 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDT-VGI------------------------------- 255 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccC-cCc-------------------------------
Confidence 44699999999999999999999999 99999752 22211000 000
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
..+ .+. ....+..+...+.+.+++ .|++++.++.|+++..+
T Consensus 256 ----------~~~--~~~--------------------------~~~~~~~l~~~l~~~l~~-~gv~i~~~~~V~~I~~~ 296 (515)
T TIGR03140 256 ----------ENL--ISV--------------------------PYTTGSQLAANLEEHIKQ-YPIDLMENQRAKKIETE 296 (515)
T ss_pred ----------ccc--ccc--------------------------CCCCHHHHHHHHHHHHHH-hCCeEEcCCEEEEEEec
Confidence 000 000 012355677777778877 49999999999998765
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++. . .+. ..+|+ .+.++.||+|||+..+
T Consensus 297 ~~~----~-~v~---~~~g~--~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 297 DGL----I-VVT---LESGE--VLKAKSVIVATGARWR 324 (515)
T ss_pred CCe----E-EEE---ECCCC--EEEeCEEEECCCCCcC
Confidence 322 1 122 23454 5899999999998753
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-14 Score=157.73 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=37.8
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
+.+|||+|||+|++|..||+.|++.| +|+|||++...-|+++.+.|.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GC 161 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGC 161 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCC
Confidence 34799999999999999999999999 999999753223555555553
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=153.09 Aligned_cols=43 Identities=30% Similarity=0.456 Sum_probs=35.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g 125 (641)
.+|||+|||||+||+.||+.|++.| +|+|||+..+ |+++.+.|
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~--GG~c~n~g 140 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTI--GGTCVNVG 140 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcc--eeeccccC
Confidence 3699999999999999999999999 9999999743 33444444
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-13 Score=149.52 Aligned_cols=34 Identities=44% Similarity=0.586 Sum_probs=31.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.+|||+|||||+||++||+.|++.| +|+|||+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 3599999999999999999999999 999999943
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-13 Score=147.42 Aligned_cols=42 Identities=36% Similarity=0.499 Sum_probs=34.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g 125 (641)
.|||+|||||+||+.||+.|++.| +|+|||+ ...|| ++.+.|
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG-~~~~~g 43 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGG-TCLNVG 43 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCC-ceeecC
Confidence 389999999999999999999999 9999999 43444 333334
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=151.45 Aligned_cols=44 Identities=30% Similarity=0.448 Sum_probs=36.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~g 125 (641)
..|||+|||+|+||+.||+.|++.| +|+|+|+....|| ++.+.|
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG-~c~n~G 59 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG-CCVNVG 59 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee-Eecccc
Confidence 4689999999999999999999999 9999999754443 334444
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=151.59 Aligned_cols=43 Identities=33% Similarity=0.546 Sum_probs=35.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
|||+|||||+||+.||+.|++.| +|+|+||... |+++.+.|.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~--GG~c~n~gci 44 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL--GGTCVNVGCV 44 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc--cCCeeeecEE
Confidence 79999999999999999999999 9999999763 3334444433
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=124.81 Aligned_cols=141 Identities=21% Similarity=0.270 Sum_probs=101.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.+.||+|||+||+||+||++||++| ||+|+|+....+|+. | .||+.. +.-.++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~-w-~GGmlf-----------------------~~iVv~- 82 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI-W-GGGMLF-----------------------NKIVVR- 82 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc-c-cccccc-----------------------ceeeec-
Confidence 3679999999999999999999999 999999988776644 2 233311 111110
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
.++-+.|++.|+++...++|.+.. .+..+...|...+.+ .|++|++.+.|.+++..+
T Consensus 83 -----~~a~~iL~e~gI~ye~~e~g~~v~-----------------ds~e~~skl~~~a~~-aGaki~n~~~veDvi~r~ 139 (262)
T COG1635 83 -----EEADEILDEFGIRYEEEEDGYYVA-----------------DSAEFASKLAARALD-AGAKIFNGVSVEDVIVRD 139 (262)
T ss_pred -----chHHHHHHHhCCcceecCCceEEe-----------------cHHHHHHHHHHHHHh-cCceeeecceEEEEEEec
Confidence 122456778899998777763321 245677788877777 599999999999999875
Q ss_pred CCCCceEEEEEEEecC------CCeEEEEEcCEEEEcCCC
Q 006532 240 DGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGG 273 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg 273 (641)
+. +|+|+++.-+. .=....|+|+.||-|||-
T Consensus 140 ~~---rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 140 DP---RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred CC---ceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 53 79999874211 112457999999999993
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-13 Score=125.84 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=90.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
..++||+|||+|+|||+||+.|++.| ||+|+|+....+|... .||+.... +.
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~--~Gg~lf~~-------------------iV------ 67 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW--GGGMLFNK-------------------IV------ 67 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT--S-CTT----------------------EE------
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc--ccccccch-------------------hh------
Confidence 34799999999999999999999999 9999999876655432 12221000 00
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+ .+....|+++|+++....+|-+. ..+..+...|..++.+ .|++|++.+.|.+++..
T Consensus 68 --Vq--~~a~~iL~elgi~y~~~~~g~~v-----------------~d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~r 125 (230)
T PF01946_consen 68 --VQ--EEADEILDELGIPYEEYGDGYYV-----------------ADSVEFTSTLASKAID-AGAKIFNLTSVEDVIVR 125 (230)
T ss_dssp --EE--TTTHHHHHHHT---EE-SSEEEE-----------------S-HHHHHHHHHHHHHT-TTEEEEETEEEEEEEEE
T ss_pred --hh--hhHHHHHHhCCceeEEeCCeEEE-----------------EcHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEEE
Confidence 00 01234567789988765444221 1255677888888887 69999999999999987
Q ss_pred CCCCCceEEEEEEEecC------CCeEEEEEcCEEEEcCCCCC
Q 006532 239 LDGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg~~ 275 (641)
+++ +|.|+++.-+. .=....|+||.||-|||--+
T Consensus 126 ~~~---rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 126 EDD---RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp CSC---EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred cCC---eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 545 99999875321 22456899999999999444
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=147.58 Aligned_cols=42 Identities=33% Similarity=0.539 Sum_probs=35.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|+|||||+||+.||..|++.| +|+||||+.. |+++.+.|.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~--GG~c~n~gci 44 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL--GGTCLNEGCM 44 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc--cccCCCCccc
Confidence 7999999999999999999999 9999999764 4455555533
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-13 Score=132.18 Aligned_cols=144 Identities=21% Similarity=0.261 Sum_probs=99.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.++||+|||||+|||+||+.|++.| +|+|+||....++.+ + .+|..... ....
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~-~-~gg~~~~~------------------~~~~------ 73 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS-W-GGGMLFSK------------------IVVE------ 73 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc-c-CCCcceec------------------cccc------
Confidence 4699999999999999999999999 999999998765543 2 12221000 0000
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
....++++++|+++....++.+. .....+...|.+.+.+ .|+++++++.|.+++.++
T Consensus 74 -----~~~~~~l~~~gi~~~~~~~g~~~-----------------~~~~el~~~L~~~a~e-~GV~I~~~t~V~dli~~~ 130 (254)
T TIGR00292 74 -----KPAHEILDEFGIRYEDEGDGYVV-----------------ADSAEFISTLASKALQ-AGAKIFNGTSVEDLITRD 130 (254)
T ss_pred -----chHHHHHHHCCCCeeeccCceEE-----------------eeHHHHHHHHHHHHHH-cCCEEECCcEEEEEEEeC
Confidence 12345677888888654332111 1234678888888887 599999999999999864
Q ss_pred CCCCceEEEEEEEecC------CCeEEEEEcCEEEEcCCCCC
Q 006532 240 DGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~------~g~~~~i~Ak~VVlAtGg~~ 275 (641)
++ .+|.|+++.... ..+...|+|+.||.|||..+
T Consensus 131 ~~--~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 131 DT--VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred CC--CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 42 258898873210 11356899999999999776
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-11 Score=134.39 Aligned_cols=152 Identities=25% Similarity=0.267 Sum_probs=87.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC--ccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES--NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g--~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
|||+|||+|+||+.||..+++.| +|+|+|+.....| .+..+.||+.... +..+ +..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~--------l~rE-ida------------ 59 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI--------LVKE-IDA------------ 59 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch--------hhhh-hhc------------
Confidence 69999999999999999999999 9999998743222 2222334432110 0000 000
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
............++.|.... .....+...+| .......+...+.+.+++..+++++.+ .|++++.++
T Consensus 60 ---LGG~~~~~~d~~~i~~r~ln-----~skgpAV~~~R----aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~ 126 (617)
T TIGR00136 60 ---LGGLMGKAADKAGLQFRVLN-----SSKGPAVRATR----AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILED 126 (617)
T ss_pred ---ccchHHHHHHhhceeheecc-----cCCCCcccccH----HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEec
Confidence 00000111112222222100 00000000111 112345677788888887678999866 788887653
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++ ++.||.+. +|. .|.|+.||+|||.|.+
T Consensus 127 ~g---~V~GV~t~---~G~--~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 127 ND---EIKGVVTQ---DGL--KFRAKAVIITTGTFLR 155 (617)
T ss_pred CC---cEEEEEEC---CCC--EEECCEEEEccCcccC
Confidence 44 68888763 454 6999999999999964
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=149.13 Aligned_cols=32 Identities=41% Similarity=0.668 Sum_probs=30.5
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|||+|||||+||+.||+.|++.| +|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999 99999974
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=147.50 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=37.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|||+|||||+||++||+.|++.| +|+|+||....-|+++.+.|.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gci 49 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCI 49 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccc
Confidence 599999999999999999999999 9999999863224444444443
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-13 Score=145.17 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=32.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCce
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 127 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi 127 (641)
+|||+|||||++|..||..+ .| +|+||||... |+++.+.|.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~--GGtC~n~GCi 43 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTF--GGTCLNVGCI 43 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCC--CCcccCcCcc
Confidence 38999999999999998764 59 9999999754 4455555533
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=127.49 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=69.2
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
...+||.+|||||.+||+||-+|+..| +|.++|--.+..-++.|--||.|...+ |.|..+
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVG-------------------CIPKKL 76 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVG-------------------CIPKKL 76 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecc-------------------cccHHH
Confidence 456899999999999999999999999 999999766555566777788877665 778888
Q ss_pred HHHHHHhHHHHHHHHHcCCcccc
Q 006532 158 RVVCTEGPDRIRELIAIGASFDR 180 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~ 180 (641)
...+....+++....++|...+.
T Consensus 77 MHQAallG~al~da~kyGW~~~e 99 (503)
T KOG4716|consen 77 MHQAALLGEALHDARKYGWNVDE 99 (503)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcc
Confidence 88888888888888888887663
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.5e-13 Score=133.07 Aligned_cols=151 Identities=16% Similarity=0.231 Sum_probs=86.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.+|||+|||+||+|..||+.+++.| +.+.|||....+ +++.+.|.+..-. +.+......
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG-GTcLnvGcIPSKA-------------------LL~nSh~yh 97 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG-GTCLNVGCIPSKA-------------------LLNNSHLYH 97 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC-ceeeeccccccHH-------------------HhhhhHHHH
Confidence 5799999999999999999999999 999999977654 4555556542100 000111111
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
++++ +.+++.|+++..- .+.+ ..+....+..-..+...+...+++ .+|+++.++ .-..+.
T Consensus 98 ~~q~-----~~~~~rGi~vs~~---~~dl--------~~~~~~k~~~vk~Lt~gi~~lfkk-nkV~~~kG~---gsf~~p 157 (506)
T KOG1335|consen 98 EAQH-----EDFASRGIDVSSV---SLDL--------QAMMKAKDNAVKQLTGGIENLFKK-NKVTYVKGF---GSFLDP 157 (506)
T ss_pred HHhh-----hHHHhcCccccce---ecCH--------HHHHHHHHHHHHHHhhHHHHHhhh-cCeEEEeee---EeecCC
Confidence 1111 1445667665421 0110 000111111223344444445554 588888774 223332
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCC
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 279 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~ 279 (641)
+ +| .+ ...+|+...|.||.+|+|||+--..||
T Consensus 158 ~----~V---~v-~k~dg~~~ii~aKnIiiATGSeV~~~P 189 (506)
T KOG1335|consen 158 N----KV---SV-KKIDGEDQIIKAKNIIIATGSEVTPFP 189 (506)
T ss_pred c----eE---EE-eccCCCceEEeeeeEEEEeCCccCCCC
Confidence 2 22 22 235678889999999999997544455
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-13 Score=150.65 Aligned_cols=72 Identities=22% Similarity=0.183 Sum_probs=48.6
Q ss_pred HHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 409 LKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 409 ~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
...|..|+.+.++-. ......|.|.||++++|++||+||+|||++.+. ..+..|+-.|++||.++.+|+..
T Consensus 240 ~a~G~~Pn~~l~~~~-l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~--------~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 240 VFVGYAPSSELFKGV-VELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL--------RQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred EEeCCCCChhHHhhh-cccCCCCeEEeCCccccCCCCEEEceeccCCCc--------chheeHHhhHHHHHHHHHHHHHh
Confidence 345666655433211 111124779999999999999999999962111 12456888899999999988854
Q ss_pred c
Q 006532 489 T 489 (641)
Q Consensus 489 ~ 489 (641)
.
T Consensus 311 ~ 311 (555)
T TIGR03143 311 L 311 (555)
T ss_pred h
Confidence 3
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-11 Score=132.37 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=88.2
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC-CCCCccc-cccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTN-YAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~-~~~g~s~-~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.+|||+|||||+||+.||+.|++.| +|+|||+.. ..++-++ -+.||+.. .++.+.+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~ak---------g~lvrEida---------- 63 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK---------GHLVREIDA---------- 63 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchh---------hHHHHHHHh----------
Confidence 4699999999999999999999999 999999874 2222111 12233210 011110100
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
............++.|..... .........| .......+...+.+.+.+..|++++. ..|++++.
T Consensus 64 -----lGg~~g~~~d~~giq~r~ln~-----skGpAV~s~R----aQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~ 128 (618)
T PRK05192 64 -----LGGEMGKAIDKTGIQFRMLNT-----SKGPAVRALR----AQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIV 128 (618)
T ss_pred -----cCCHHHHHHhhccCceeeccc-----CCCCceeCcH----HhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEe
Confidence 000111222333444321100 0000000011 11224556777878887666899865 57899987
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+ ++ +|.||... +|. .|.|+.||+|||.|.+
T Consensus 129 e-~g---rV~GV~t~---dG~--~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 129 E-NG---RVVGVVTQ---DGL--EFRAKAVVLTTGTFLR 158 (618)
T ss_pred c-CC---EEEEEEEC---CCC--EEECCEEEEeeCcchh
Confidence 6 45 78888763 453 6999999999998764
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-13 Score=147.31 Aligned_cols=114 Identities=20% Similarity=0.296 Sum_probs=76.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
...|||+|||||+||++||+.|++.| +|+|+++. .+|...... ++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-~~------------------------------- 254 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-GI------------------------------- 254 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-cc-------------------------------
Confidence 44699999999999999999999999 99999764 222110000 00
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
+. -.++ ....+..+...|.+.+++ .|++++.++.|+++..+
T Consensus 255 ----------~~--~~~~--------------------------~~~~~~~l~~~l~~~~~~-~gv~i~~~~~V~~I~~~ 295 (517)
T PRK15317 255 ----------EN--FISV--------------------------PETEGPKLAAALEEHVKE-YDVDIMNLQRASKLEPA 295 (517)
T ss_pred ----------cc--cCCC--------------------------CCCCHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEec
Confidence 00 0000 012355677888888877 49999999999999775
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++. . -+. ..+|+ .+.++.||+|||+..+
T Consensus 296 ~~~----~-~V~---~~~g~--~i~a~~vViAtG~~~r 323 (517)
T PRK15317 296 AGL----I-EVE---LANGA--VLKAKTVILATGARWR 323 (517)
T ss_pred CCe----E-EEE---ECCCC--EEEcCEEEECCCCCcC
Confidence 321 1 122 23454 5899999999998654
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=137.95 Aligned_cols=149 Identities=22% Similarity=0.286 Sum_probs=85.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.+|||+|||+||||++||+.|++.| +|+|+||....+..... .+++... ..+... .....+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~-~~~~~~~-----~l~~l~--------~~~~~~-i-- 64 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC-GGGLSPR-----ALEELI--------PDFDEE-I-- 64 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc-cceechh-----hHHHhC--------CCcchh-h--
Confidence 4699999999999999999999999 99999998876654333 2222100 000000 000000 0
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCccccc--CCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAR--EGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~--~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
..... +..+... ........ ..+... .-..+.+.|.+.+++ .|++++.++.++++..
T Consensus 65 --------~~~v~--~~~~~~~-~~~~~~~~~~~~~y~v---------~R~~fd~~La~~A~~-aGae~~~~~~~~~~~~ 123 (396)
T COG0644 65 --------ERKVT--GARIYFP-GEKVAIEVPVGEGYIV---------DRAKFDKWLAERAEE-AGAELYPGTRVTGVIR 123 (396)
T ss_pred --------heeee--eeEEEec-CCceEEecCCCceEEE---------EhHHhhHHHHHHHHH-cCCEEEeceEEEEEEE
Confidence 00000 0000000 00000000 001111 123566778888887 5999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++++ .+.++.. +. .+++||.||.|+|..+.
T Consensus 124 ~~~~---~~~~~~~-----~~-~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 124 EDDG---VVVGVRA-----GD-DEVRAKVVIDADGVNSA 153 (396)
T ss_pred eCCc---EEEEEEc-----CC-EEEEcCEEEECCCcchH
Confidence 8555 4433322 22 58999999999996664
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.4e-13 Score=143.63 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 126 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~gg 126 (641)
+|||+|||+|++|..||..+ .| +|+||||... |+++.+.|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~~--GGtC~n~GC 43 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGTF--GGTCLNVGC 43 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCC--CCeeeccCc
Confidence 58999999999999987554 69 9999999764 445555553
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-11 Score=128.52 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
..+...|.+.+++ .|++++.++.|+++..+ ++ ++.++.. .+|+...+.|+.||+|||++.
T Consensus 259 ~rL~~aL~~~l~~-~Gv~I~~g~~V~~v~~~-~~---~V~~v~~---~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFER-LGGRIMPGDEVLGAEFE-GG---RVTAVWT---RNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHh-CCCEEEeCCEEEEEEEe-CC---EEEEEEe---eCCceEEEECCEEEEeCCCcc
Confidence 3455677777876 59999999999999876 44 4655442 345566899999999999864
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=141.82 Aligned_cols=188 Identities=15% Similarity=0.118 Sum_probs=109.6
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccC--CCCC--HHHHH------HHH----H
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDS--VESHM------QDT----I 145 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~--~~d~--~~~~~------~d~----~ 145 (641)
.++||+|||||+.|+++|+.|+++| +|+||||..+..|+|..++|-+..... ..+. ....+ .+. +
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 4699999999999999999999999 999999998887888777664432111 0111 10000 000 0
Q ss_pred HhccC--CCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCc-ccccCCCccccceeeccC--CcHHHHHHHHHHHHHc
Q 006532 146 VAGAY--LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNL-HLAREGGHSHHRIVHAAD--MTGREIERALLEAVVS 220 (641)
Q Consensus 146 ~~g~~--~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~-~~~~~gg~~~~r~~~~~~--~~g~~~~~~l~~~~~~ 220 (641)
....+ +..+.. . .......++.+...|++...-..... ...+.-.......++..+ .....++..+...+.+
T Consensus 85 ~~~g~l~~~~~~~--~-~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~~ 161 (546)
T PRK11101 85 EPTDGLFITLPED--D-LAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKE 161 (546)
T ss_pred cccCCceEEeccc--c-HHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHHh
Confidence 00000 000000 0 00011123344455655321100000 000000000011111111 2356777888888877
Q ss_pred CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 221 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 221 ~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.|++++++++|++|..+ ++ ++.|+.+.+..+++...|+|+.||+|||.++.
T Consensus 162 -~Ga~i~~~t~V~~i~~~-~~---~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 162 -HGAQILTYHEVTGLIRE-GD---TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred -CCCEEEeccEEEEEEEc-CC---eEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 49999999999999876 44 78899988877777678999999999998874
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=131.91 Aligned_cols=49 Identities=18% Similarity=0.081 Sum_probs=39.1
Q ss_pred ccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006532 429 MCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 485 (641)
Q Consensus 429 ~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~ 485 (641)
..|.|.||++++|++||+||+|||+ +. .......|+..|+.||.+++++
T Consensus 251 ~~g~i~v~~~~~t~~~~vya~GD~~--~~------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 251 EGGYIVTDEGMRTSVPGVFAAGDVR--DK------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCCcEEECCCCccCCCCEEEeeccc--Cc------chhhhhhhhhhHHHHHHHHHhh
Confidence 3578999999999999999999997 32 1134567888899999988765
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-13 Score=141.33 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=110.4
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcccc----ccCceeeccC----CCCCHHHHHHHHH----
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY----AQGGVSAVLC----PSDSVESHMQDTI---- 145 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~----a~ggi~~~~~----~~d~~~~~~~d~~---- 145 (641)
...++||||||||..|..||+.++.+| +|.|||++++.+|.|+. .+||+.+... .+......+.+.+
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~ 143 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERA 143 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999 99999999999988876 4677754321 1111111111111
Q ss_pred ---HhccCCCCHHHHHHHHHHhHHHHHHHHH----cCCccccCCCCCcc------cccC------C---Ccc-ccceee-
Q 006532 146 ---VAGAYLCDDETVRVVCTEGPDRIRELIA----IGASFDRGEDGNLH------LARE------G---GHS-HHRIVH- 201 (641)
Q Consensus 146 ---~~g~~~~~~~~~~~~~~~~~~~i~~l~~----~Gv~~~~~~~g~~~------~~~~------g---g~~-~~r~~~- 201 (641)
+...+++.+-.+.. ....|+.- .|+++-.--.|.-. +... . -.. .--+++
T Consensus 144 ~lle~APhLs~~lPIml------Pvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYy 217 (680)
T KOG0042|consen 144 NLLEIAPHLSQPLPIML------PVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYY 217 (680)
T ss_pred HHhhcCccccCCcceee------ehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEe
Confidence 11122221111000 11122210 13322111111100 0000 0 000 000111
Q ss_pred ccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 202 AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 202 ~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...-..+.-.+.=.+.. .|.++.++.+|.+|++++++ ++.|+.+.|..+|+.+.|+||.||.|||.|+-
T Consensus 218 DGQ~nDaRmnl~vAlTA~r-~GA~v~Nh~ev~~Llkd~~~---kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 218 DGQHNDARMNLAVALTAAR-NGATVLNHVEVVSLLKDKDG---KVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred cCCCchHHHHHHHHHHHHh-cchhhhhHHHHHHHhhCCCC---ceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 1222223343444444444 49999999999999999777 89999999999999999999999999999884
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-13 Score=135.35 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.|..+...|.+.+++ ..|++++-..+++|...... -+..-....+|. .+++|.||||||+.-+
T Consensus 264 eGpkl~~ale~Hv~~-Y~vDimn~qra~~l~~a~~~-----~~l~ev~l~nGa--vLkaktvIlstGArWR 326 (520)
T COG3634 264 EGPKLAAALEAHVKQ-YDVDVMNLQRASKLEPAAVE-----GGLIEVELANGA--VLKARTVILATGARWR 326 (520)
T ss_pred cchHHHHHHHHHHhh-cCchhhhhhhhhcceecCCC-----CccEEEEecCCc--eeccceEEEecCcchh
Confidence 366778888888887 48999999889998863211 123333345665 6899999999997654
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=136.48 Aligned_cols=185 Identities=19% Similarity=0.187 Sum_probs=109.6
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccc----cCceeeccCCCCC-HHHHHH---HHHHhccCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYA----QGGVSAVLCPSDS-VESHMQ---DTIVAGAYL 151 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a----~ggi~~~~~~~d~-~~~~~~---d~~~~g~~~ 151 (641)
.++||+|||||+.|+.+|+.|+.+| +|+|+|++.+.+|.|+.+ +||..+....+.+ ..+-+. -+.+....+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 6799999999999999999999999 999999999999988775 4566655443222 111111 011222222
Q ss_pred CCHHHH----------HHHHHHhHHHHHHHHHcCCc----cccCCC---CC---ccccc---CCCccccceeeccCCcHH
Q 006532 152 CDDETV----------RVVCTEGPDRIRELIAIGAS----FDRGED---GN---LHLAR---EGGHSHHRIVHAADMTGR 208 (641)
Q Consensus 152 ~~~~~~----------~~~~~~~~~~i~~l~~~Gv~----~~~~~~---g~---~~~~~---~gg~~~~r~~~~~~~~g~ 208 (641)
+.+... ..+........+++- |+. -.+.-+ +. ..+.. .|+..++. ......
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~la--g~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D----~~vdda 164 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLA--GIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPD----GVVDDA 164 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhh--cccccCCcceecchhhhhhcCcccchhhccceEEEcc----ceechH
Confidence 211110 000000001111111 110 000000 00 00000 01111110 111234
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.++-.+...+.+ .|.++++++.|+.++.+ ++ +.||.+.|..+|+.+.|+|+.||.|||.|..-
T Consensus 165 RLv~~~a~~A~~-~Ga~il~~~~v~~~~re-~~----v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAE-HGAEILTYTRVESLRRE-GG----VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHh-cccchhhcceeeeeeec-CC----EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 566666667776 49999999999999986 43 88999999999999999999999999999853
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-12 Score=137.92 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~ 115 (641)
.|||||||+||+.||..|++.+ +|+|+|+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 6999999999999999998873 8999999864
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=131.40 Aligned_cols=160 Identities=20% Similarity=0.255 Sum_probs=84.6
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
.+|||+|||||+||++||+.|++.| +|+||||...++... .. ||..... ..+..+.+ +.....+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~-~~-gg~i~~~----~~~~l~~~-------~~~~~~i~~ 70 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN-MT-GGRLYAH----TLEAIIPG-------FAASAPVER 70 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccc-cc-Cceeecc----cHHHHccc-------ccccCCccc
Confidence 4699999999999999999999999 999999988754322 22 3321110 11111000 000000000
Q ss_pred HHHHhHHHHHHHHHcCCccccCCCCCcccccCCCc-cc-cceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH-SH-HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~-~~-~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
......+.+.. .++.......... .. +...+ ......+.+.|.+.+++ .|++++.++.|+++..
T Consensus 71 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fd~~L~~~a~~-~Gv~i~~~~~V~~i~~ 136 (429)
T PRK10015 71 ----------KVTREKISFLT-EESAVTLDFHREQPDVPQHASY--TVLRNRLDPWLMEQAEQ-AGAQFIPGVRVDALVR 136 (429)
T ss_pred ----------cccceeEEEEe-CCCceEeecccCCCCCCCcCce--EeehhHHHHHHHHHHHH-cCCEEECCcEEEEEEE
Confidence 00000000100 0000000000000 00 00000 01123455678888877 5999999999999987
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
+ ++ ++.++.. ++ ..++|+.||+|+|..+.+
T Consensus 137 ~-~~---~v~~v~~----~~--~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 137 E-GN---KVTGVQA----GD--DILEANVVILADGVNSML 166 (429)
T ss_pred e-CC---EEEEEEe----CC--eEEECCEEEEccCcchhh
Confidence 5 44 5666542 22 269999999999986643
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-11 Score=130.70 Aligned_cols=185 Identities=13% Similarity=0.073 Sum_probs=99.1
Q ss_pred CccccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCceeeccCCCCCHHHH--------------
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH-------------- 140 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~-------------- 140 (641)
..+.++||+|||||++|+++|++|+++ | +|+|||++....|+|..+.|.+.............
T Consensus 20 ~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 99 (460)
T TIGR03329 20 VGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASE 99 (460)
T ss_pred CCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHH
Confidence 345679999999999999999999998 8 99999999887888888776442211100000000
Q ss_pred -----HHHHHHhccCCCCHHH--------HHHHHHHhHHHHHHHHHcCCc-cccCCCCCcccccCCCccccceee-cc--
Q 006532 141 -----MQDTIVAGAYLCDDET--------VRVVCTEGPDRIRELIAIGAS-FDRGEDGNLHLAREGGHSHHRIVH-AA-- 203 (641)
Q Consensus 141 -----~~d~~~~g~~~~~~~~--------~~~~~~~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~gg~~~~r~~~-~~-- 203 (641)
+.+.......-|+... -..-.+......+.+.++|++ +..-....+. ...+...+...++ +.
T Consensus 100 ~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~-~~~~~~~~~~g~~~~~~g 178 (460)
T TIGR03329 100 QAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELA-RRTGSARHLEGFYSPVAA 178 (460)
T ss_pred HHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHH-HHhCCCcceEEEEeCCCe
Confidence 0111110000010000 000011111223334445543 1110000000 0000000111111 11
Q ss_pred CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 204 DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 204 ~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
...+..++..|.+.+++ .|++|++++.|+++... + ...|. +.+| .|+|+.||+|||++..
T Consensus 179 ~i~P~~l~~~L~~~a~~-~Gv~i~~~t~V~~i~~~--~----~~~v~---t~~g---~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALE-LGVEIHENTPMTGLEEG--Q----PAVVR---TPDG---QVTADKVVLALNAWMA 238 (460)
T ss_pred EECHHHHHHHHHHHHHH-cCCEEECCCeEEEEeeC--C----ceEEE---eCCc---EEECCEEEEccccccc
Confidence 12466788999988887 59999999999998642 2 22232 2445 4899999999999864
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-12 Score=131.18 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=32.3
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
+..+||+|||||+|||+||+.|++.| +|+++|+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~ 40 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK 40 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence 45689999999999999999999999 9999997643
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=133.88 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC-CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~-~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
....+...|.+.+.+ .|+++++++.|++|..++ ++ ++.||.+.+..+++.+.|+|+.||+|+|+++..
T Consensus 230 dp~rl~~al~~~A~~-~Ga~i~~~~~V~~l~~~~~~g---~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 230 NDSRLNVALACTAAL-AGAAVLNYAEVVSLIKDESTG---RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred cHHHHHHHHHHHHHh-CCcEEEeccEEEEEEEecCCC---cEEEEEEEECCCCcEEEEEeCEEEECCCHhHHH
Confidence 466788889999888 499999999999998764 34 688998887777777789999999999999753
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=127.96 Aligned_cols=180 Identities=13% Similarity=0.133 Sum_probs=99.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcccccc----CceeeccCCCCCHHHHHHHH-------HHhc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQ----GGVSAVLCPSDSVESHMQDT-------IVAG 148 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~----ggi~~~~~~~d~~~~~~~d~-------~~~g 148 (641)
..+||||||||+.|+++|+.|+++| +|+||||..+.+|+|..+. ||+.+... . .. ....+. ....
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~-~-~~-~l~~e~l~er~~l~~~~ 81 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH-Y-EF-RLVREALAEREVLLRMA 81 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh-c-cH-HHHHHHHHHHHHHHHhC
Confidence 4599999999999999999999999 9999999998888776654 44433211 0 00 111111 1111
Q ss_pred cCCCCHH---------HHHHHHHHhHHHHHHHHHcC----C------ccccCCCCCcccccCCCccccceeeccC--CcH
Q 006532 149 AYLCDDE---------TVRVVCTEGPDRIRELIAIG----A------SFDRGEDGNLHLAREGGHSHHRIVHAAD--MTG 207 (641)
Q Consensus 149 ~~~~~~~---------~~~~~~~~~~~~i~~l~~~G----v------~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g 207 (641)
..++.+- ....+.... .+..+..++ + .+...... ..+. . .........+ ...
T Consensus 82 p~~~~~l~~~~~~~~~~~~~~~~~~--gl~lyd~~~~~~~l~~~~~~~~~~~~~~-~~L~--~--~l~g~~~~~dg~vd~ 154 (508)
T PRK12266 82 PHIIWPMRFVLPHRPHLRPAWMIRA--GLFLYDHLGKRKSLPGSRGLDLGRDPAG-SPLK--P--EITRGFEYSDCWVDD 154 (508)
T ss_pred CCcccccceEEEecccccchHHHHH--HHHHHHhhcCCCCCChhhhhchhhcccC-CCcc--h--hhcEEEEEcCcccCH
Confidence 1111110 000000000 000111111 0 00000000 0000 0 0001111111 234
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..++..+...+.+ .|++++++++|+++..+ ++ ..++.+.+..+|+...|+|+.||+|||.++.
T Consensus 155 ~rl~~~l~~~A~~-~Ga~i~~~~~V~~i~~~-~~----~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAE-RGAEILTRTRVVSARRE-NG----LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHH-cCCEEEcCcEEEEEEEe-CC----EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 6677777777777 49999999999999875 33 3467776655677778999999999998874
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=123.25 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=99.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCC--HHH-------HHHHHHHhcc----
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDS--VES-------HMQDTIVAGA---- 149 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~--~~~-------~~~d~~~~g~---- 149 (641)
||+|||||++|+++|+.|++.| +|+|||++.+.++.|..+.|.+........+ ... .+.+......
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 8999999999999999999999 9999999977777776664444333111111 111 1111111110
Q ss_pred -------CCC-CHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcc-cccCCCccccceeeccC---CcHHHHHHHHHHH
Q 006532 150 -------YLC-DDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-LAREGGHSHHRIVHAAD---MTGREIERALLEA 217 (641)
Q Consensus 150 -------~~~-~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-~~~~gg~~~~r~~~~~~---~~g~~~~~~l~~~ 217 (641)
.+. ++.... ......+.+.+.++++.......+. ..+.........++... .....+...|.+.
T Consensus 81 ~~~~g~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~ 156 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAE----SLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAE 156 (358)
T ss_dssp EEECEEEEEESSHHHHH----HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred cccccccccccchhhhh----hccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHH
Confidence 001 222211 1123334455556643211000000 00000000011111111 2367899999999
Q ss_pred HHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 218 VVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 218 ~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+++. |++|+++++|++|..+ ++ ++.||.+ .+| .|+|+.||+|+|.++.
T Consensus 157 ~~~~-Gv~i~~~~~V~~i~~~-~~---~v~gv~~---~~g---~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 157 AQRA-GVEIRTGTEVTSIDVD-GG---RVTGVRT---SDG---EIRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHT-T-EEEESEEEEEEEEE-TT---EEEEEEE---TTE---EEEECEEEE--GGGHH
T ss_pred HHHh-hhhccccccccchhhc-cc---ccccccc---ccc---ccccceeEecccccce
Confidence 9884 9999999999999987 44 6777765 445 4999999999998764
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-11 Score=131.04 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=41.3
Q ss_pred cCceEeCCC-CCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 430 CGGVRAGLQ-GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 430 ~GGI~vD~~-~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.|.|.||++ ++|++||+||+||++ +|. ..+..|+-.|+.||.++.+|+.
T Consensus 412 ~G~i~vd~~~~~Ts~pgVfAaGD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 412 RGCIVADEETGLTSKEGVFAGGDAV-TGA--------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCcEEECCCCCccCCCCEEEeCCCC-CCc--------hHHHHHHHHHHHHHHHHHHHhc
Confidence 477999998 999999999999997 332 2467899999999999988874
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.7e-11 Score=129.34 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=29.6
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~ 116 (641)
+|||||||+||++||..|++.+ +|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 5999999999999999999875 79999998753
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-10 Score=123.46 Aligned_cols=186 Identities=12% Similarity=0.059 Sum_probs=99.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCcee----eccCCC-CCHHHHH---HHHHHhccC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS----AVLCPS-DSVESHM---QDTIVAGAY 150 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~----~~~~~~-d~~~~~~---~d~~~~g~~ 150 (641)
..++||+|||||++|+++|+.|+++| +|+||||..+.+|+|..+.+-+. +..... ....+-+ ...+.....
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 34599999999999999999999999 99999999988887776554332 111000 0000000 011111211
Q ss_pred CCCHHH---------HHHHHHHhHHHHHHHHHcCCc--cccCCCCCcccc----cCCC-ccccceeec--cCCcHHHHHH
Q 006532 151 LCDDET---------VRVVCTEGPDRIRELIAIGAS--FDRGEDGNLHLA----REGG-HSHHRIVHA--ADMTGREIER 212 (641)
Q Consensus 151 ~~~~~~---------~~~~~~~~~~~i~~l~~~Gv~--~~~~~~g~~~~~----~~gg-~~~~r~~~~--~~~~g~~~~~ 212 (641)
+..+-. ...+.. ...+..+..++.. +.. ...+... ...- ......... .......+..
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~--~~g~~ly~~~~~~~~~~~--~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~ 159 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLV--RLGLFLYDHLGGRKRLPG--TRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVV 159 (502)
T ss_pred cccccceEEecccccccHHHH--HHHHHHHHhccCCCCCCc--ceEechhhccccCCchHhcCEEEEEcCeeecHHHHHH
Confidence 111100 000000 0001111111210 000 0000000 0000 000011111 1123566777
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...+.+ .|+++++++.|+++..+ ++ ..++.+.+.. |+...|+|+.||+|||.++.
T Consensus 160 ~l~~~a~~-~Ga~i~~~~~V~~i~~~-~~----~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 160 LNALDAAE-RGATILTRTRCVSARRE-GG----LWRVETRDAD-GETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHH-CCCEEecCcEEEEEEEc-CC----EEEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence 78888877 59999999999999875 33 4466666544 77778999999999998874
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-09 Score=115.86 Aligned_cols=143 Identities=26% Similarity=0.275 Sum_probs=79.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
...+||+|||||+||+++|+.+++.| +|+|||+......+ .|+. ...+.+. ++ .+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n-----~GvW---------~~~l~~l-----gl--~~~-- 162 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---------EDEFKDL-----GL--EDC-- 162 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc-----cccc---------hhHHHhc-----Cc--HHH--
Confidence 44699999999999999999999999 99999986432211 1221 0001000 00 000
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.. ..+...-+.+. ++.... -+..+. ......+...|.+.+.+ .|+++ .++.|+++..+
T Consensus 163 --i~------~~w~~~~v~~~---~~~~~~---~~~~Yg------~V~R~~L~~~Ll~~a~~-~GV~~-~~~~V~~I~~~ 220 (529)
T PLN02697 163 --IE------HVWRDTIVYLD---DDKPIM---IGRAYG------RVSRTLLHEELLRRCVE-SGVSY-LSSKVDRITEA 220 (529)
T ss_pred --HH------hhcCCcEEEec---CCceee---ccCccc------EEcHHHHHHHHHHHHHh-cCCEE-EeeEEEEEEEc
Confidence 00 00000001110 111000 000000 12345677888888877 59998 56689998765
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+++ +..+.. .+|. .|.|+.||.|+|..+.
T Consensus 221 ~~~----~~vv~~---~dG~--~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 221 SDG----LRLVAC---EDGR--VIPCRLATVASGAASG 249 (529)
T ss_pred CCc----EEEEEE---cCCc--EEECCEEEECCCcChh
Confidence 333 322222 2343 6899999999998874
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-09 Score=109.62 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
-..++..+.+.+.+ .|++|+++++|.+|+.+ ++ .+.++.. .+|+ .|.|+.||||.|-.++
T Consensus 172 l~~vvkni~~~l~~-~G~ei~f~t~VeDi~~~-~~---~~~~v~~---~~g~--~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLES-LGGEIRFNTEVEDIEIE-DN---EVLGVKL---TKGE--EIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHh-cCcEEEeeeEEEEEEec-CC---ceEEEEc---cCCc--EEecCEEEEccCcchH
Confidence 35677888899988 59999999999999987 43 3556654 3554 6999999999996665
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-10 Score=118.59 Aligned_cols=54 Identities=24% Similarity=0.213 Sum_probs=37.5
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCC-CCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGL-HGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~-~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
.|||.||+++||++|++||+|||+.... .|.. .--.....|.-.|++||++++.
T Consensus 254 ~~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~-~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 254 ANGIVIDEACRTCDPAIFAGGDVAITRLDNGAL-HRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred CCCEEECCCCccCCCCEEEccceEeeeCCCCCE-EEECcHHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999972111 1111 0011235678889999888764
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=125.39 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=39.3
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 485 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~ 485 (641)
.|+|.||+.++|++||+||+||++ +|. .....|+-.|+.||.++.+|
T Consensus 402 ~G~i~vd~~~~Ts~~~VfA~GD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 402 RGTIVVDEDQRTSIPGVFAGGDII-LGA--------ATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CCeEEeCCCCccCCCCEEEecCCC-CCc--------HHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999997 332 24668899999999988765
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-10 Score=116.00 Aligned_cols=150 Identities=27% Similarity=0.337 Sum_probs=84.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEE-ecCCCCCcccc-ccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVIT-KAEPHESNTNY-AQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~lle-k~~~~~g~s~~-a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
||+|||||.||+.||+.||+.| +|+|+. +....+.-++. +-||+ .. ..+++.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~---------~k---------------g~L~~Ei 56 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGI---------AK---------------GHLVREI 56 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEEST---------TH---------------HHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccc---------cc---------------cchhHHH
Confidence 8999999999999999999999 999993 32222211111 11222 11 1111122
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
-.....+.......++.|......+ . ..++. +|.. .| -..+...+.+.+++.++++|+. .+|++|+.+ +
T Consensus 57 dalgg~m~~~aD~~~i~~~~lN~sk---G-pav~a-~r~q--vD--r~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e-~ 125 (392)
T PF01134_consen 57 DALGGLMGRAADETGIHFRMLNRSK---G-PAVHA-LRAQ--VD--RDKYSRAMREKLESHPNLTIIQ-GEVTDLIVE-N 125 (392)
T ss_dssp HHTT-SHHHHHHHHEEEEEEESTTS-----GGCTE-EEEE--E---HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEEC-T
T ss_pred hhhhhHHHHHHhHhhhhhhcccccC---C-CCccc-hHhh--cc--HHHHHHHHHHHHhcCCCeEEEE-cccceEEec-C
Confidence 1112223333444455443211000 0 01111 1111 11 3356667777888778999985 589999987 5
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+ +|.||+. .+|+ .|.|+.||+|||.|.+
T Consensus 126 ~---~v~GV~~---~~g~--~~~a~~vVlaTGtfl~ 153 (392)
T PF01134_consen 126 G---KVKGVVT---KDGE--EIEADAVVLATGTFLN 153 (392)
T ss_dssp T---EEEEEEE---TTSE--EEEECEEEE-TTTGBT
T ss_pred C---eEEEEEe---CCCC--EEecCEEEEecccccC
Confidence 5 8999876 4565 6999999999998664
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.8e-10 Score=114.55 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCC-eEEEEEcCEEEEcCCCCC
Q 006532 212 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFISKVTLLASGGAG 275 (641)
Q Consensus 212 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g-~~~~i~Ak~VVlAtGg~~ 275 (641)
..++..+.++.|++|+.++.|++|+.+.++ .+++||.+.+..+. ....+.+|.||||+|++.
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~--~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDG--GRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTS--TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccc--cceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 344445555569999999999999875333 38999999986555 356778899999999876
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-10 Score=128.80 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=39.1
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.|.|.||+.++|++||+||+||++ .|. ..+..|+..|+.||.+++...
T Consensus 794 ~G~I~VDetlqTs~pgVFAaGD~a-~Gp--------~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 794 KGWPVVDANGETSLTNVYMIGDVQ-RGP--------STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCCEEeCCCcccCCCCEEEEeccc-cCc--------hHHHHHHHHHHHHHHHHhhhc
Confidence 467999999999999999999997 332 246788889999999887643
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-10 Score=122.92 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=41.1
Q ss_pred cCceEeCC-CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|+|.||. .++|++||+||+||++ +|. .....|+..|+.||.++..++.+
T Consensus 403 ~g~i~vd~~~~~Ts~~~VfA~GD~~-~~~--------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 403 WGTIIADDETGRTSLPGVFAGGDIV-TGA--------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCEEeCCCCCccCCCCEEEeCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899998 7899999999999997 331 24567889999999999888753
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-09 Score=111.08 Aligned_cols=31 Identities=32% Similarity=0.591 Sum_probs=30.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
|||+||||||||++||+.|++.| +|+|+||.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999 99999997
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=115.45 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=38.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCce
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGV 127 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~-~~~g~s~~a~ggi 127 (641)
+||+|||||+.|+++|++|++.| +|+||||+. ...+.|..+.|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~ 48 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQL 48 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEE
Confidence 59999999999999999999999 999999997 4556666655544
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-10 Score=119.11 Aligned_cols=185 Identities=15% Similarity=0.116 Sum_probs=102.6
Q ss_pred CccccccEEEECccHHHHHHHHHHHhc-C--CeEEEEecCCCCCccccccCceeeccCC-CCCH-----HHHHHHHHHh-
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAEPHESNTNYAQGGVSAVLCP-SDSV-----ESHMQDTIVA- 147 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llek~~~~~g~s~~a~ggi~~~~~~-~d~~-----~~~~~d~~~~- 147 (641)
.....+||+|||||++|+++|+.|++. | +|+|+||..+..|.|..+.|.+...... .... ...+.++...
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~ 105 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDL 105 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHh
Confidence 334579999999999999999999985 8 7999999988777777776655432221 1110 0111221111
Q ss_pred ccC--C---------CCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcc-----cccCCCc--cccceeec---cCCc
Q 006532 148 GAY--L---------CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-----LAREGGH--SHHRIVHA---ADMT 206 (641)
Q Consensus 148 g~~--~---------~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-----~~~~gg~--~~~r~~~~---~~~~ 206 (641)
+.. + .+++.. +......+.+.+.|++........+. +...++. .....++. ....
T Consensus 106 ~~~~~~~~~G~l~~a~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~ 181 (407)
T TIGR01373 106 NYNVMFSQRGVLNLCHSTADM----DDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTAR 181 (407)
T ss_pred CCCcCEEeccEEEEeCCHHHH----HHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCC
Confidence 100 0 011111 11122233344556654321100000 0000000 00111111 1112
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
...+...|.+.+.+ .|++++++++|+++..++++ .+.++.. .+| .+.|+.||+|+|++..
T Consensus 182 p~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~---~~~~v~t---~~g---~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 182 HDAVAWGYARGADR-RGVDIIQNCEVTGFIRRDGG---RVIGVET---TRG---FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCC---cEEEEEe---CCc---eEECCEEEECCChhhH
Confidence 34566778888877 59999999999999764344 4555543 345 5899999999999874
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.8e-11 Score=128.60 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=35.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 162 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~~ 162 (641)
||||||||+||++||+.|++.| +|+||||....||.... +++....... ...... .-+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~--~~~~~~~~~~-~~~~~~----------------~gi~- 60 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS--GGVSPFDGNH-DEDQVI----------------GGIF- 60 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG--SSS-EETTEE-HHHHHH----------------HHHH-
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE--CCcCChhhcc-hhhccC----------------CCHH-
Confidence 8999999999999999999999 99999999988775432 3332222110 000000 0000
Q ss_pred HhHHHHHHHHHcCCc-cccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 163 EGPDRIRELIAIGAS-FDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 163 ~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+.++.+...+-. .. ...+... . .......+...|.+.+.+ .|++++.++.|++++.+ ++
T Consensus 61 --~e~~~~~~~~~~~~~~-~~~~~~~----------~----~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~-~~ 121 (428)
T PF12831_consen 61 --REFLNRLRARGGYPQE-DRYGWVS----------N----VPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRD-GG 121 (428)
T ss_dssp --HHHHHST-----------------------------------------------------------------------
T ss_pred --HHHHHHHhhhcccccc-ccccccc----------c----cccccccccccccccccc-ccccccccccccccccc-cc
Confidence 0111111111100 00 0000000 0 000111223344444544 69999999999999987 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
+|.||.+.+.. | ..+|+|+.||.|||-
T Consensus 122 ---~i~~V~~~~~~-g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 122 ---RITGVIVETKS-G-RKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------
T ss_pred ---ccccccccccc-c-ccccccccccccccc
Confidence 79999987643 5 678999999999994
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=119.66 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=84.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
..|||+|||||+||++||+.|+++| +|+||||...++... . .||.... ...+..+.+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~-~-~gg~l~~----~~~e~l~~~~~-------------- 63 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN-V-TGGRLYA----HSLEHIIPGFA-------------- 63 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc-c-ccceech----hhHHHHhhhhh--------------
Confidence 3599999999999999999999999 999999988664322 1 2333211 01111111100
Q ss_pred HHHHhHHHHHHH-HHcCCccccCCCCCcccccCCCc--cccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 160 VCTEGPDRIREL-IAIGASFDRGEDGNLHLAREGGH--SHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 160 ~~~~~~~~i~~l-~~~Gv~~~~~~~g~~~~~~~gg~--~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
...+ ++.. ....+.|. ..++.......... ...... .......+...|.+.+++ .|++++.++.|+++.
T Consensus 64 --~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~v~R~~fD~~L~~~a~~-~Gv~i~~~~~V~~i~ 135 (428)
T PRK10157 64 --DSAP--VERLITHEKLAFM-TEKSAMTMDYCNGDETSPSQRS--YSVLRSKFDAWLMEQAEE-AGAQLITGIRVDNLV 135 (428)
T ss_pred --hcCc--ccceeeeeeEEEE-cCCCceeeccccccccCCCCCc--eeeEHHHHHHHHHHHHHH-CCCEEECCCEEEEEE
Confidence 0000 0000 00000110 01111100000000 000000 001134566778888877 599999999999998
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+ ++ .+.++. .+|+ .+.|+.||+|+|..+.
T Consensus 136 ~~-~g---~v~~v~----~~g~--~i~A~~VI~A~G~~s~ 165 (428)
T PRK10157 136 QR-DG---KVVGVE----ADGD--VIEAKTVILADGVNSI 165 (428)
T ss_pred Ee-CC---EEEEEE----cCCc--EEECCEEEEEeCCCHH
Confidence 76 44 555543 1343 5899999999997553
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.1e-09 Score=111.39 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=36.2
Q ss_pred CcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 440 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 440 ~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
++.-+|+..+||++ |. .+.+.|.++..|+.+|++||+.+++.+.
T Consensus 266 ~~~~~~~llvGDAA--g~--v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 266 RRVVGRVALVGDAA--GY--VTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred cEECCCEEEEEcCC--CC--CCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 34458999999997 33 3678899999999999999999987653
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=113.89 Aligned_cols=184 Identities=20% Similarity=0.166 Sum_probs=100.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCC-CccccccCceeeccCCCCCHHHHHHHHHHhccC------
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHE-SNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAY------ 150 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~-g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~------ 150 (641)
..+||+|||||+.|+++|+.|++.+ +|+||||....+ .+|..++|-+.+... .++...-.+....|..
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~--y~p~slka~l~~~g~~~~~~~~ 79 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLY--YTPGSLKAKLCVAGNINEFAIC 79 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceecccc--CCCcchhhHHHHHHHHHHHHHH
Confidence 3689999999999999999999986 899999987654 344444443332221 1111111111111110
Q ss_pred -------CCCHHHH----HHHHHHhHHHHHHHHHcCCc-cccCCCCCcccccC-----CCccccceeeccCCcHHHHHHH
Q 006532 151 -------LCDDETV----RVVCTEGPDRIRELIAIGAS-FDRGEDGNLHLARE-----GGHSHHRIVHAADMTGREIERA 213 (641)
Q Consensus 151 -------~~~~~~~----~~~~~~~~~~i~~l~~~Gv~-~~~~~~g~~~~~~~-----gg~~~~r~~~~~~~~g~~~~~~ 213 (641)
...+.++ +.-.+......+.+...|++ +... +..-....+ +....-..-.........+...
T Consensus 80 kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~l-d~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 80 KQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEIL-DKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred HHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeec-CHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence 0000000 00011111222233344554 1110 000000000 0000000000122345678899
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
|.+.+.++ |+++..+++|++|...+|| +...++.+|+.. ++||.||.|.|+++-
T Consensus 159 l~e~a~~~-g~~i~ln~eV~~i~~~~dg-------~~~~~~~~g~~~-~~ak~Vin~AGl~Ad 212 (429)
T COG0579 159 LAEEAQAN-GVELRLNTEVTGIEKQSDG-------VFVLNTSNGEET-LEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHc-CCEEEecCeeeEEEEeCCc-------eEEEEecCCcEE-EEeeEEEECCchhHH
Confidence 99999985 9999999999999987553 445566777655 999999999998874
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-09 Score=114.93 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....+...|.+.+++ .|++|+++++|+++..++++ .+ .+.+.++.+|+...|+|+.||+|+|+++.
T Consensus 176 dp~~l~~aL~~~a~~-~Gv~i~~~t~V~~i~~~~~~---~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQ-NGTTIRFGHEVRNLKRQSDG---SW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCC---eE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence 467788999999987 49999999999999875443 22 23333444565557999999999999875
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.7e-09 Score=118.62 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..+++|++++.|+++..+++ .|. +.+.+..+|+..+++|+.||.|+|..+.+
T Consensus 126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~----~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD----GVT-ATVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred HHHHHHHHHHHHhCCCceEEeccEEEEEEECCC----eEE-EEEEECCCCcEEEEEEEEEEecCCcchHH
Confidence 346677788777656899999999999987644 344 55556567877789999999999988853
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=115.15 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....++..|.+.+.+ .|++|+++++|+++..+ ++ .+.++.. .++ .++|+.||+|+|.++.
T Consensus 199 ~p~~~~~~l~~~~~~-~G~~i~~~~~V~~i~~~-~~---~~~~v~t---~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 199 DCQLFTQRLAAMAEQ-LGVKFRFNTPVDGLLVE-GG---RITGVQT---GGG---VITADAYVVALGSYST 258 (416)
T ss_pred CHHHHHHHHHHHHHH-CCCEEEcCCEEEEEEec-CC---EEEEEEe---CCc---EEeCCEEEECCCcchH
Confidence 356778888888877 59999999999999875 33 4555543 333 5899999999998864
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.2e-10 Score=121.25 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=40.8
Q ss_pred cCceEeC-CCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAG-LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD-~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|.|.+| +.++|++||+||+||++ +|. .....|+-.|+.||.++.+|+..
T Consensus 416 ~g~i~vd~~~~~Ts~~gVfa~GD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 416 RGRVAAPDNAYQTSNPKVFAAGDMR-RGQ--------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCEEeCCCcccCCCCCEEEccccC-CCc--------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 4778998 78999999999999997 322 23567888999999999988753
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-10 Score=107.54 Aligned_cols=31 Identities=48% Similarity=0.743 Sum_probs=28.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
||+|||||+||+.||..|++.+ +|+|+|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 7999999999999999999999 999997754
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=115.67 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=34.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...+|+|||||+|||+||..|++.| +|+|+|+....+|.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 3569999999999999999999999 99999998766554
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.8e-09 Score=111.46 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=36.1
Q ss_pred CceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 431 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 431 GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
+||.||++++|++||+||+|||+ .+.|. .+ + .+..|...|+.||++++.
T Consensus 253 ~gi~vd~~l~ts~~~VyA~GD~a--~~~~~-~~-~-~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 253 RGIVVDSYLQTSAPDIYALGDCA--EINGQ-VL-P-FLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CCEEECCCcccCCCCEEEeeecE--eECCc-ee-e-hHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999997 33332 11 1 244567788888887764
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-10 Score=129.31 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=40.3
Q ss_pred cCceEeCC-CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 430 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 430 ~GGI~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.|.|.||+ .++|++||+||+||++ .| .....+|+-.|+.||.++.+|+.
T Consensus 578 ~G~I~vd~~~~~Ts~pgVFAaGD~~-~G--------~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 578 WGTIEVEKGSQRTSIKGVYSGGDAA-RG--------GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCEEECCCCCccCCCCEEEEEcCC-CC--------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789996 4899999999999997 32 23567899999999999988764
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=114.85 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=86.7
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
.....+||+|||||+||+++|+.|++.| +|+|+||.+...-.. ...++. ..+. ... .++.- ++
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~g~~~~--l~~~--~~~----~L~~l-Gl----- 77 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA--KGQAYA--LSLL--SAR----IFEGI-GV----- 77 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC--CCcEEE--echH--HHH----HHHHC-Ch-----
Confidence 3445799999999999999999999999 999999987532110 011111 1000 000 01000 00
Q ss_pred HHHHHHHhHHHHHHHHHcCCccc----cCCCCC--cccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 157 VRVVCTEGPDRIRELIAIGASFD----RGEDGN--LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~----~~~~g~--~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
.+.+...+.++. .+..+. ..+..... ......+.. ....+.+.|.+.+.+..++++++++
T Consensus 78 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~l~~~L~~~~~~~~~v~i~~~~ 143 (415)
T PRK07364 78 -----------WEKILPQIGKFRQIRLSDADYPGVVKFQPTDL-GTEALGYVG--EHQVLLEALQEFLQSCPNITWLCPA 143 (415)
T ss_pred -----------hhhhHhhcCCccEEEEEeCCCCceeeeccccC-CCCccEEEE--ecHHHHHHHHHHHhcCCCcEEEcCC
Confidence 111112222211 011110 00000000 000000000 1134677788888765689999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.++++..++++ + .+.+. .+++..+++||.||.|+|..+.+
T Consensus 144 ~v~~v~~~~~~----~-~v~~~--~~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 144 EVVSVEYQQDA----A-TVTLE--IEGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred eeEEEEecCCe----e-EEEEc--cCCcceEEeeeEEEEeCCCCchh
Confidence 99999766332 2 23332 23444579999999999988753
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.7e-10 Score=127.83 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=37.0
Q ss_pred ccCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 429 MCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 429 ~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
..|||.||+++||++|++||+|||+ ..++ .+.| ....|.-.|+.|+.+++.
T Consensus 259 ~~G~I~VD~~l~Ts~p~IYAiGD~a--~~~~--~~~g-l~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 259 PRGGIVINDSCQTSDPDIYAIGECA--SWNN--RVFG-LVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred CCCcEEECCCCcCCCCCEEEeecce--eEcC--cccc-cHHHHHHHHHHHHHHhcC
Confidence 3589999999999999999999997 3322 1111 234566677778777654
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=113.33 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=93.5
Q ss_pred cccEEEECccHHHHHHHHHHHhc--C-CeEEEEecC-CCCCccccccCceeeccC-CCCC-HHHH-------HHHHHHhc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAE-PHESNTNYAQGGVSAVLC-PSDS-VESH-------MQDTIVAG 148 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~-~~~g~s~~a~ggi~~~~~-~~d~-~~~~-------~~d~~~~g 148 (641)
.+||+|||||++|+++|+.|+++ | +|+||||.. ...++|..+.|.+..... ..++ ...+ +.+....-
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999999999998 9 999999986 444555555443322111 1111 0010 11111100
Q ss_pred cC-C---------CCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCcc-----cccCCCccccceeeccCCcHHHHHHH
Q 006532 149 AY-L---------CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-----LAREGGHSHHRIVHAADMTGREIERA 213 (641)
Q Consensus 149 ~~-~---------~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-----~~~~gg~~~~r~~~~~~~~g~~~~~~ 213 (641)
.. . .+++.. +......+++.+.|+++..-....+. +...++...+.. .......+...
T Consensus 82 ~~~~~~~G~l~~~~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~---g~vd~~~l~~a 154 (393)
T PRK11728 82 GIPYEECGKLLVATSELEL----ERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPST---GIVDYRAVAEA 154 (393)
T ss_pred CCCcccCCEEEEEcCHHHH----HHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCc---eEECHHHHHHH
Confidence 00 0 011111 11112223334445543211000000 000011000100 11135678888
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
|.+.+++ .|+++++++.|+++..+ ++ .+ .+.. .+| .+.|+.||+|+|.++.
T Consensus 155 L~~~~~~-~Gv~i~~~~~V~~i~~~-~~---~~-~V~~---~~g---~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 155 MAELIQA-RGGEIRLGAEVTALDEH-AN---GV-VVRT---TQG---EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHh-CCCEEEcCCEEEEEEec-CC---eE-EEEE---CCC---EEEeCEEEECCCcchH
Confidence 9988887 59999999999998765 33 22 2322 344 5899999999998763
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.9e-09 Score=113.75 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....+...|.+.+++..|++++++++|+++..++++ .+ .+.+.++.+|+..+|+|+.||+|+|+++.
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg---~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG---SW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC---CE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 356788899998887534899999999999875454 33 23443334564446899999999999874
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-08 Score=106.85 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.8
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
....+||+|||||+||+++|+.|++.| +|+|+|+.+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 345699999999999999999999999 999999865
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=126.89 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=34.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
...||+|||||+||++||+.|++.| +|+|+|+....+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 3579999999999999999999999 9999999876543
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-08 Score=107.81 Aligned_cols=37 Identities=35% Similarity=0.444 Sum_probs=33.5
Q ss_pred CccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.....+||+||||||||++||+.|+++| +|+|+||..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3445699999999999999999999999 999999975
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-10 Score=130.47 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=41.8
Q ss_pred cCceEeCC-----CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006532 430 CGGVRAGL-----QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 430 ~GGI~vD~-----~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
.|.|.+|. .++|++||+||+||++ +|. ..+..|+..|++||.++.+|+...
T Consensus 702 ~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~-~G~--------~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 702 WGNIAADDGKLESTQSTNLPGVFAGGDIV-TGG--------ATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCcEEeCCCccccCcCCCCCCEEEecCcC-CCc--------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46688886 6899999999999997 332 246789999999999999998654
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=112.96 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=40.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCcee
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS 128 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~ 128 (641)
+||+|||||++|+++|+.|++.| +|+|||+.....|+|..+.|.+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~ 47 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVW 47 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEE
Confidence 69999999999999999999999 99999999887777777766554
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=114.42 Aligned_cols=181 Identities=16% Similarity=0.153 Sum_probs=92.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC-CccccccCceeeccCCCCCHHH-------HHHHHHHh-ccCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE-SNTNYAQGGVSAVLCPSDSVES-------HMQDTIVA-GAYLC 152 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~-g~s~~a~ggi~~~~~~~d~~~~-------~~~d~~~~-g~~~~ 152 (641)
|||+|||||++|+++|+.|+++| +|+||||..... +.+....+++.......+.... ++.++... +....
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 69999999999999999999999 999999987542 2232222233221111111111 11111111 10000
Q ss_pred CHHHHHHHH----HHhHHHHHHHHHcCCccccCCCCCcccccCCCcc---ccceee-cc--CCcHHHHHHHHHHHHHcCC
Q 006532 153 DDETVRVVC----TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---HHRIVH-AA--DMTGREIERALLEAVVSDP 222 (641)
Q Consensus 153 ~~~~~~~~~----~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~---~~r~~~-~~--~~~g~~~~~~l~~~~~~~~ 222 (641)
.+.-...+. +......+.+.+.|++...-....+. ..+.... ....++ .. -.....+...|.+.+++ .
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~-~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~-~ 158 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLK-QRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEA-H 158 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHH-HhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHH-c
Confidence 000000000 11122334455566553211100000 0000000 000111 11 11345677888888877 5
Q ss_pred CcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 223 NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 223 gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
|++++.+++|+++..+ ++ .+ .+.. .++ .|.|+.||+|+|++..
T Consensus 159 g~~~~~~~~V~~i~~~-~~---~~-~v~~---~~~---~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 159 GATVRDGTKVVEIEPT-EL---LV-TVKT---TKG---SYQANKLVVTAGAWTS 201 (380)
T ss_pred CCEEECCCeEEEEEec-CC---eE-EEEe---CCC---EEEeCEEEEecCcchH
Confidence 9999999999999875 33 23 2322 334 5899999999998764
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-10 Score=110.72 Aligned_cols=165 Identities=25% Similarity=0.333 Sum_probs=101.7
Q ss_pred CCccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHH
Q 006532 77 DGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 77 ~~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~ 155 (641)
...+..+||+|||+|.+|.+-|+.|++.| +|.||||+-.. |+..+.+.+..|.++.
T Consensus 40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E--------------------PdRivGEllQPGG~~~--- 96 (509)
T KOG1298|consen 40 ARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE--------------------PDRIVGELLQPGGYLA--- 96 (509)
T ss_pred hccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccccc--------------------chHHHHHhcCcchhHH---
Confidence 34566799999999999999999999999 99999997531 2333333333332221
Q ss_pred HHHHHHHHhHHHHHHHHHcCCccccCCCCC-----cccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGN-----LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 230 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~-----~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~ 230 (641)
+.+.-.++..+.++...-.|..+.. +|+ |....+......|.+|. | .++..|.+.+...+||++.++
T Consensus 97 L~~LGl~Dcve~IDAQ~v~Gy~ifk--~gk~v~~pyP~~~f~~d~~GrsFhn----G-RFvq~lR~ka~slpNV~~eeG- 168 (509)
T KOG1298|consen 97 LSKLGLEDCVEGIDAQRVTGYAIFK--DGKEVDLPYPLKNFPSDPSGRSFHN----G-RFVQRLRKKAASLPNVRLEEG- 168 (509)
T ss_pred HHHhCHHHHhhcccceEeeeeEEEe--CCceeeccCCCcCCCCCcccceeec----c-HHHHHHHHHHhcCCCeEEeee-
Confidence 0000111111112211122332221 111 11111111112233322 2 477788888888899999988
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.|.+|+.+ +| .|.||...+.. |+..+..|.-.|+|.|.|+++
T Consensus 169 tV~sLlee-~g---vvkGV~yk~k~-gee~~~~ApLTvVCDGcfSnl 210 (509)
T KOG1298|consen 169 TVKSLLEE-EG---VVKGVTYKNKE-GEEVEAFAPLTVVCDGCFSNL 210 (509)
T ss_pred eHHHHHhc-cC---eEEeEEEecCC-CceEEEecceEEEecchhHHH
Confidence 58899876 66 89999998755 555789999999999999865
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=125.68 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=41.3
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.|.|.||++++|++||+||+||++ +| ...+..|+-.|++||.++.+|+.
T Consensus 702 ~G~i~vd~~~~Ts~~gVfA~GD~~-~g--------~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 702 KGTIVVDEEMQSSIPGIYAGGDIV-RG--------GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCEEeCCCCCCCCCCEEEeCCcc-CC--------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 477999999999999999999997 33 13467899999999999988864
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=116.11 Aligned_cols=49 Identities=31% Similarity=0.537 Sum_probs=40.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCceeec
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVSAV 130 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~-~~~g~s~~a~ggi~~~ 130 (641)
.+||+|||||++|+++|+.|+++| +|+||||.. +..|+|..+.|.+...
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~ 310 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPL 310 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccc
Confidence 479999999999999999999999 999999985 5567776666555433
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-09 Score=112.14 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=39.4
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
.|.|.||++.+|++||+||+|||+ ++. ..+..|+..|+.|+.++.+++
T Consensus 302 ~g~i~vd~~~~t~~~~vyaiGD~~-~~~--------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 302 KGEIVVDEKHMTSREGVFAAGDVV-TGP--------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCcEeeCCCcccCCCCEEEEcccc-cCc--------chHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999997 332 135678888999999988776
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=121.72 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=41.6
Q ss_pred cCceEeCC-CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006532 430 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 430 ~GGI~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
.|.|.||+ .++|++||+||+||++ +|. .....|+-.|++||.++.+|+...
T Consensus 452 ~G~I~vd~~~~~Ts~pgVfA~GDv~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 452 NGTVKVDPETLQTSVAGVFAGGDCV-TGA--------DIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred CCcEeeCCCCCcCCCCCEEEcCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46799997 5889999999999997 332 245778899999999999998654
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-08 Score=107.49 Aligned_cols=79 Identities=9% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEE-EEcCEEEEcCCCCCcC--CCCCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVR-FISKVTLLASGGAGHI--YPSTTN 283 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~-i~Ak~VVlAtGg~~~~--~~~~~~ 283 (641)
-..++..|.+.++++ ||+|+.++.|++|+.+.++...+|+|+.+.....++.+. ..+|.||+|+||+... +..++.
T Consensus 225 yeSLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~ 303 (576)
T PRK13977 225 YESLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDT 303 (576)
T ss_pred hhHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCC
Confidence 467889999999985 999999999999998522212489999886422233333 4569999999999863 444444
Q ss_pred ccc
Q 006532 284 PLV 286 (641)
Q Consensus 284 ~~~ 286 (641)
|+.
T Consensus 304 p~~ 306 (576)
T PRK13977 304 PAP 306 (576)
T ss_pred CCC
Confidence 443
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-09 Score=107.52 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=81.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
|||+|||||+||+++|+.|++.| +|+|+||....+. .....++.. ...+. +. ... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~-----~~~~~-----l~---~~~-~------- 57 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY--KPCGGALSP-----RVLEE-----LD---LPL-E------- 57 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc--ccccCccCH-----hHHHH-----hc---CCc-h-------
Confidence 69999999999999999999999 9999999876432 111112210 00000 00 000 0
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCc-ccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNL-HLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~-~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
...... ....+. ..++.. ..... .... .......+...|.+.+.+ .|++++.++.++++..+++
T Consensus 58 ----~~~~~~--~~~~~~-~~~~~~~~~~~~----~~~~---~~i~r~~l~~~l~~~~~~-~gv~~~~~~~v~~~~~~~~ 122 (295)
T TIGR02032 58 ----LIVNLV--RGARFF-SPNGDSVEIPIE----TELA---YVIDRDAFDEQLAERAQE-AGAELRLGTTVLDVEIHDD 122 (295)
T ss_pred ----hhhhhe--eeEEEE-cCCCcEEEeccC----CCcE---EEEEHHHHHHHHHHHHHH-cCCEEEeCcEEeeEEEeCC
Confidence 000000 001110 011110 00000 0000 001234577788888877 5999999999999987633
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+ .+.+ .++ ..+++|+.||+|+|..+.+
T Consensus 123 ----~~-~~~~---~~~-~~~~~a~~vv~a~G~~s~~ 150 (295)
T TIGR02032 123 ----RV-VVIV---RGG-EGTVTAKIVIGADGSRSIV 150 (295)
T ss_pred ----EE-EEEE---cCc-cEEEEeCEEEECCCcchHH
Confidence 22 1222 122 2368999999999987643
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-09 Score=96.86 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=78.0
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
.+...|+|||+|||+..||+.|++.. +-+|+|-.... + .+.||.......
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-~---i~pGGQLtTTT~------------------------- 56 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-G---IAPGGQLTTTTD------------------------- 56 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-C---cCCCceeeeeec-------------------------
Confidence 44568999999999999999999999 99999964321 1 111221100000
Q ss_pred HHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+ .|.. ++.+.+|..++..+.++..+ .|.+|+.. .|.++..+
T Consensus 57 ------------ve----NfPG--------------------FPdgi~G~~l~d~mrkqs~r-~Gt~i~tE-tVskv~~s 98 (322)
T KOG0404|consen 57 ------------VE----NFPG--------------------FPDGITGPELMDKMRKQSER-FGTEIITE-TVSKVDLS 98 (322)
T ss_pred ------------cc----cCCC--------------------CCcccccHHHHHHHHHHHHh-hcceeeee-ehhhcccc
Confidence 00 0110 12345688899999999887 59999987 47777654
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
. ++.-++. +.+ .++|++||+|||+.++
T Consensus 99 s-----kpF~l~t---d~~---~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 99 S-----KPFKLWT---DAR---PVTADAVILATGASAK 125 (322)
T ss_pred C-----CCeEEEe---cCC---ceeeeeEEEeccccee
Confidence 2 3433332 222 6899999999998875
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-09 Score=111.49 Aligned_cols=180 Identities=11% Similarity=0.044 Sum_probs=91.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC--CccccccCceeeccCCCCCH-------HHHHHHHHHh-c-
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE--SNTNYAQGGVSAVLCPSDSV-------ESHMQDTIVA-G- 148 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~--g~s~~a~ggi~~~~~~~d~~-------~~~~~d~~~~-g- 148 (641)
.++||+|||||++|+++|+.|++.| +|+||||+.... +++..+.+.+.......... ...+.+..+. +
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~ 81 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE 81 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence 3589999999999999999999999 999999987643 22211111111111111100 0111121111 1
Q ss_pred -------cCCCCHHHHHHHHHHhHHHHHHHHHcCCccccCCCCCccc-cc-CCCccccceee-cc--CCcHHHHHHHHHH
Q 006532 149 -------AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHL-AR-EGGHSHHRIVH-AA--DMTGREIERALLE 216 (641)
Q Consensus 149 -------~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~-~~-~gg~~~~r~~~-~~--~~~g~~~~~~l~~ 216 (641)
......+. .+......+.+.++|++...-....+.. .+ .........++ .. -.....++..+.+
T Consensus 82 ~~~~~~G~l~~~~~~----~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~ 157 (376)
T PRK11259 82 PLFVRTGVLNLGPAD----SDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLR 157 (376)
T ss_pred ccEEEECCEEEcCCC----CHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHH
Confidence 00000000 0011123344555665432110000000 00 00000000111 11 1134567777777
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+.+ .|+++++++.|+++..+ ++ .+ .+. +.+| .++|+.||+|+|++..
T Consensus 158 ~~~~-~gv~i~~~~~v~~i~~~-~~---~~-~v~---~~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 158 LARE-AGAELLFNEPVTAIEAD-GD---GV-TVT---TADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHH-CCCEEECCCEEEEEEee-CC---eE-EEE---eCCC---EEEeeEEEEecCcchh
Confidence 7776 59999999999999875 33 22 232 2345 5899999999998864
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-08 Score=109.17 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....+...|.+.+.+..|+++++++.|++|..++++ .+. +.+.++.+++...++|+.||+|+|+++.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~---~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDG---GWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCC---CEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 456788889888865459999999999999865343 232 2322334453336899999999999885
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=110.72 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+.+..|++++.++.++++..+ ++ .+.|+.+.. .+|+ ..++|+.||.|+|+.+.
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~---~v~~v~~~~-~~g~-~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GG---RVTGVRART-PDGP-GEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CC---EEEEEEEEc-CCCc-EEEEeCEEEECCCCchH
Confidence 4567788887776569999999999999876 44 577776643 3343 47999999999999885
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-09 Score=108.16 Aligned_cols=163 Identities=26% Similarity=0.326 Sum_probs=99.9
Q ss_pred cccccEEEECccHHHHHHHHHHHhc----C---CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH----G---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLC 152 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~----G---~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~ 152 (641)
..++||+|||||+|||+||++|.+. + +|+||||+...+|.+.. |.+ .. .....+.+.++-..+..++
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS--Gav---ie-p~aldEL~P~wke~~apl~ 147 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS--GAV---IE-PGALDELLPDWKEDGAPLN 147 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec--cee---ec-cchhhhhCcchhhcCCccc
Confidence 3579999999999999999999763 3 79999999988876632 211 11 1122233333332222222
Q ss_pred CHHHHHHHHHHhHHHHHHHHH-cCCcc----ccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEE
Q 006532 153 DDETVRVVCTEGPDRIRELIA-IGASF----DRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~l~~-~Gv~~----~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
.+-. .+.+.+|.. +-+++ ..+..|.|. + .=..+++.|-+++++ .||+|+
T Consensus 148 t~vT--------~d~~~fLt~~~~i~vPv~~pm~NhGNYv------------v-----~L~~~v~wLg~kAEe-~GvEiy 201 (621)
T KOG2415|consen 148 TPVT--------SDKFKFLTGKGRISVPVPSPMDNHGNYV------------V-----SLGQLVRWLGEKAEE-LGVEIY 201 (621)
T ss_pred cccc--------ccceeeeccCceeecCCCcccccCCcEE------------E-----EHHHHHHHHHHHHHh-hCceec
Confidence 1111 011111110 00110 001111111 0 113578889999988 699999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecC---CCe-------EEEEEcCEEEEcCCCCCcC
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVE---TQE-------VVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~---~g~-------~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+..+.+++.++|| .|.|+...|.. +|. -..|.|+..|+|-|..+.+
T Consensus 202 Pg~aaSevly~edg---sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 202 PGFAASEVLYDEDG---SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred cccchhheeEcCCC---cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 99999999999888 89999876531 221 2579999999999998875
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=112.22 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+.+.|.+.+++. |+++..++.++++..+.++ +.. .+.+..+|+..+|+|+.||.|.|..+.
T Consensus 111 ~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d~~~----~~~-~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 111 PELDRALREEAEER-GVDIRFGTRVVSIEQDDDG----VTV-VVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHH-TEEEEESEEEEEEEEETTE----EEE-EEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHHhhhhhhhhh-hhhheeeeecccccccccc----ccc-ccccccCCceeEEEEeeeecccCcccc
Confidence 46778888888874 8999999999999887543 443 344556788889999999999998875
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=114.76 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..||+++++ .+++++.+ ++ .+.||.+.+ .+|+..++.|+.||.|+|.++.+
T Consensus 147 ~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~---~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 147 GRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KG---VIKGVTYKN-SAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CC---EEEEEEEEc-CCCCEEEEECCEEEECCCCchHH
Confidence 4577888888877668999876 58888765 44 678888754 35766778999999999998864
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-09 Score=120.07 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=40.9
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.|.|.||++++|++||+||+||++ .+ .++..|+-.|+.||.++.+|+.
T Consensus 555 ~G~i~vd~~~~Ts~~gVfAaGD~~-~~---------~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 555 RGRILTNEYGQTSIPWLFAGGDIV-HG---------PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCeEEeCCCCccCCCCEEEecCcC-Cc---------hHHHHHHHHHHHHHHHHHHHhc
Confidence 577999999999999999999997 22 2467789999999999988863
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=108.63 Aligned_cols=182 Identities=20% Similarity=0.190 Sum_probs=100.6
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCC-C---------HHHHHHHHHHhcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSD-S---------VESHMQDTIVAGA 149 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d-~---------~~~~~~d~~~~g~ 149 (641)
..+||+|||||++|+++|+.|++.| +|+|+|+.....|+|..+.+++........ + ...++.+....-.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELG 82 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999 999999999888888888887765544311 0 0111111111100
Q ss_pred ---CCCCHHHHHHHHH-------HhHHHHHHHHHcCCcc---ccCC----CCCcccc-cCCCccccceeeccCCcHHHHH
Q 006532 150 ---YLCDDETVRVVCT-------EGPDRIRELIAIGASF---DRGE----DGNLHLA-REGGHSHHRIVHAADMTGREIE 211 (641)
Q Consensus 150 ---~~~~~~~~~~~~~-------~~~~~i~~l~~~Gv~~---~~~~----~g~~~~~-~~gg~~~~r~~~~~~~~g~~~~ 211 (641)
.+.....+..... ......+.++...... .... ...+... ..++...+. ........++
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~---~~~~~p~~~~ 159 (387)
T COG0665 83 TGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPT---GGHLDPRLLT 159 (387)
T ss_pred cchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCC---CCcCCHHHHH
Confidence 0111111111111 1122222333333221 0000 0000000 001100000 1122356788
Q ss_pred HHHHHHHHcCCC-cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 212 RALLEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 212 ~~l~~~~~~~~g-v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..|.+.+.+. | ..+..++.++.+..+. + +.+|.. .+|+ |.|+.||+|||+++..
T Consensus 160 ~~l~~~~~~~-G~~~~~~~~~~~~~~~~~-~----~~~v~t---~~g~---i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 160 RALAAAAEEL-GVVIIEGGTPVTSLERDG-R----VVGVET---DGGT---IEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHhc-CCeEEEccceEEEEEecC-c----EEEEEe---CCcc---EEeCEEEEcCchHHHH
Confidence 8999999884 6 6777788898887541 2 334433 3453 9999999999988753
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=106.81 Aligned_cols=35 Identities=34% Similarity=0.529 Sum_probs=32.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
++||+|||||++|+++|+.|++.| +|+|+||....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 589999999999999999999999 99999998753
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-09 Score=120.49 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=36.3
Q ss_pred CceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 431 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 431 GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
|||.||+++||+.|++||+|||+ ...+ .+.| ....+.-.|+.+|.+++.
T Consensus 252 ggI~Vd~~~~Ts~p~IyA~GD~a--~~~~--~~~g-l~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 252 RGIIVNDSMQTSDPDIYAVGECA--EHNG--RVYG-LVAPLYEQAKVLADHICG 300 (785)
T ss_pred CCEEECCCcccCCCCEEEeeecc--eeCC--cccc-cHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999997 2322 1222 244566778888877754
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-08 Score=109.01 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+.+.|.+.+++ .|++++.++.++++..++++ + .+.. .+|+ +++|+.||.|+|+.+.+
T Consensus 100 ~~le~~L~~~l~~-~gv~i~~~~~v~~v~~~~~~----v---~v~~-~~g~--~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 100 NHIERILAEWVGE-LGVPIYRGREVTGFAQDDTG----V---DVEL-SDGR--TLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCCe----E---EEEE-CCCC--EEEeCEEEEecCCCCCc
Confidence 4566777788877 49999999999999886443 2 2222 3453 68999999999998843
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=111.41 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred cCceE-eCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVR-AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~-vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|.|. +|+.++|++||+||+||++ +|. .....|+-.|++||.++.+|+..
T Consensus 430 ~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 430 RGNISAGYDDYSTSIPGVFAAGDCR-RGQ--------SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCCEEecCCCceECCCCEEEeeccC-CCc--------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46674 4678999999999999997 332 24567899999999999998754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-07 Score=100.63 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC-C
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA-G 275 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~-~ 275 (641)
|..+.+.|.+.+++ .|++++.++.|+++..+ ++ ++.++... ++....+.|+.||||||+| +
T Consensus 262 G~RL~~aL~~~~~~-~Gg~il~g~~V~~i~~~-~~---~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 262 GIRLEEALKHRFEQ-LGGVMLPGDRVLRAEFE-GN---RVTRIHTR---NHRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred HHHHHHHHHHHHHH-CCCEEEECcEEEEEEee-CC---eEEEEEec---CCccceEECCEEEEccCCCcC
Confidence 67788889999987 59999999999999876 44 57776542 3323479999999999998 5
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=110.37 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=88.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~ 158 (641)
+..+||+|||||++||++|+.|++.| +|+|+||........ . ++. ..+ ...+.+++. ++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~-r---a~~--l~~--~~~~~L~~l-----Gl------- 67 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLP-R---AVG--IDD--EALRVLQAI-----GL------- 67 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCC-c---eee--eCH--HHHHHHHHc-----CC-------
Confidence 45689999999999999999999999 999999987432111 0 110 000 000001000 00
Q ss_pred HHHHHhHHHHHHHHHc-----CCccccCCCCCcc--cc-cC-CCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcc
Q 006532 159 VVCTEGPDRIRELIAI-----GASFDRGEDGNLH--LA-RE-GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEH 229 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~-----Gv~~~~~~~g~~~--~~-~~-gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~ 229 (641)
.+.+.+. ++.|.. .+|... +. .. +.+.++.. .......+.+.|.+.+.+..|++|+.+
T Consensus 68 ---------~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~---~~~~q~~le~~L~~~~~~~~gv~v~~g 134 (538)
T PRK06183 68 ---------ADEVLPHTTPNHGMRFLD-AKGRCLAEIARPSTGEFGWPRR---NAFHQPLLEAVLRAGLARFPHVRVRFG 134 (538)
T ss_pred ---------hhHHHhhcccCCceEEEc-CCCCEEEEEcCCCCCCCCCChh---ccCChHHHHHHHHHHHHhCCCcEEEcC
Confidence 0111111 122211 122111 00 00 00001100 111233466777777776569999999
Q ss_pred eEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 230 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 230 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
++|+++..++++ +. +.+.+ .+|+..+++|+.||.|+|..+.+
T Consensus 135 ~~v~~i~~~~~~----v~-v~~~~-~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 135 HEVTALTQDDDG----VT-VTLTD-ADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred CEEEEEEEcCCe----EE-EEEEc-CCCCEEEEEEEEEEecCCCchhH
Confidence 999999887443 32 33322 25666689999999999988853
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-08 Score=109.03 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+ .|++++.+++++++..++++ +. +.+.+..+ ...++|+.||.|+|+.+.+
T Consensus 109 ~~le~~L~~~l~~-~gv~i~~~~~v~~i~~~~~~----v~-v~~~~~~~--~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 109 WRTERILRERLAE-LGHRVEFGCELVGFEQDADG----VT-ARVAGPAG--EETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHHHHHHH-CCCEEEeCcEEEEEEEcCCc----EE-EEEEeCCC--eEEEEeCEEEECCCCchHH
Confidence 3466778888877 49999999999999876443 32 22222222 3479999999999998853
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-09 Score=111.29 Aligned_cols=151 Identities=23% Similarity=0.228 Sum_probs=90.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc--ccccCceeec--cCCCCCHHHHHHHHHHhccCCCCHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT--NYAQGGVSAV--LCPSDSVESHMQDTIVAGAYLCDDET 156 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s--~~a~ggi~~~--~~~~d~~~~~~~d~~~~g~~~~~~~~ 156 (641)
.|||+|||||-||+-||+.+++.| +++|+.-..-.-|.. +-+-||+.-- ...-|.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDA-------------------- 63 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDA-------------------- 63 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehh--------------------
Confidence 499999999999999999999999 999988754322222 2244555311 000000
Q ss_pred HHHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006532 157 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 157 ~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
....+-....+.|+.|.-... ....+-...| .......+...+.+.++...|+.++.+ .|++|+
T Consensus 64 ------LGG~Mg~~~D~~~IQ~r~LN~-----sKGPAVra~R----aQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli 127 (621)
T COG0445 64 ------LGGLMGKAADKAGIQFRMLNS-----SKGPAVRAPR----AQADKWLYRRAMKNELENQPNLHLLQG-EVEDLI 127 (621)
T ss_pred ------ccchHHHhhhhcCCchhhccC-----CCcchhcchh----hhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHh
Confidence 000111112233555532110 0001101111 111234455677777877789999987 689999
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+++. +|.||+.. .|. .|.|++|||+||-|-+
T Consensus 128 ~e~~~---~v~GV~t~---~G~--~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 128 VEEGQ---RVVGVVTA---DGP--EFHAKAVVLTTGTFLR 159 (621)
T ss_pred hcCCC---eEEEEEeC---CCC--eeecCEEEEeeccccc
Confidence 86443 68898764 454 6999999999998764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=106.88 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
-..+...|.+.+.+..+|+++.++.|+.+..+++. +. +.. +. +|+ +++|+.||-|.|..+.
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~----v~-v~l-~~-dG~--~~~a~llVgADG~~S~ 163 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG----VT-VTL-SF-DGE--TLDADLLVGADGANSA 163 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc----eE-EEE-cC-CCc--EEecCEEEECCCCchH
Confidence 45688899999988667999999999999987543 54 443 22 566 8999999999998874
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-08 Score=105.47 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+.+.|.+.+.+..|++++.++.++++..++++ .+..+.. .+|+ ++.++.||-|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~~~v~~---~~g~--~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDADG---TVTSVTL---SDGE--RVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCC---cEEEEEe---CCCC--EEECCEEEECCCCChH
Confidence 3567778888766579999999999999886555 4445543 3454 6899999999998874
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=110.91 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
...+|+|||+|++|++||..|++.| +|+|+|+.+..+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 4579999999999999999999999 9999999876544
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=107.69 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=39.4
Q ss_pred cCceEeCCCCC-cccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAGLQGE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD~~~~-T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|+|.||+++| |++||+||+|||+ .+.+. ........|.-.|..+|+++...+..
T Consensus 294 ~G~I~Vd~~l~~~~~~~IfAiGD~a--~~~~~--~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 294 RGRISVDDHLRVKPIPNVFALGDCA--ANEER--PLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCcEEeCCCcccCCCCCEEEEeccc--cCCCC--CCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999 6999999999997 33221 11122344677888888888877643
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-07 Score=106.68 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=34.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...+|+|||||+|||+||..|++.| +|+|+|+....+|.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe
Confidence 3578999999999999999999999 99999999876553
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.2e-08 Score=107.95 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...|.+.+++ .|++++.++.++++..++++ +. +.+.+ .+| ..+++|+.||.|+|..+.
T Consensus 101 ~le~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~----v~-v~~~~-~~g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARS-LGVEIFRGAEVLAVRQDGDG----VE-VVVRG-PDG-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHH-cCCeEEeCCEEEEEEEcCCe----EE-EEEEe-CCc-cEEEEeCEEEECCCCChH
Confidence 456667777766 59999999999999876443 32 33332 234 347999999999998874
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-08 Score=107.60 Aligned_cols=60 Identities=7% Similarity=0.124 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHc----CCC--cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVS----DPN--ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~----~~g--v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....+...|.+.+++ . | ++|+++++|++|..++++ +..|. +.+| .|+|+.||+|+|+++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~-G~~v~i~~~t~V~~I~~~~~~----~~~V~---T~~G---~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVP-GKKISINLNTEVLNIERSNDS----LYKIH---TNRG---EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhc-CCCEEEEeCCEEEEEEecCCC----eEEEE---ECCC---EEEeCEEEECcChhHH
Confidence 356788888888876 4 5 889999999999876332 33333 2455 5899999999999885
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.7e-08 Score=106.84 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...|.+.+.+ .|++++.++.|+++..++++ + .+.. .+|+ +++|+.||.|+|+.+.
T Consensus 110 ~le~~L~~~~~~-~Gv~v~~~~~v~~l~~~~~~----v---~v~~-~~g~--~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 110 YVEKLLDDKLKE-AGAAVKRNTSVVNIELNQAG----C---LTTL-SNGE--RIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCe----e---EEEE-CCCc--EEEeCEEEECCCCCHH
Confidence 455667777777 59999999999999887443 2 2221 3454 7899999999998774
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=104.28 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=31.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
.||+|||||++|+.||+.|++.| +|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 49999999999999999999999 99999987653
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-08 Score=105.48 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+++ .|++++.++.|+++..++++ +. +.. .+|+ ++.|+.||.|+|..+.
T Consensus 113 ~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~~~~----v~-v~~---~~g~--~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 113 DLLVDRLWAALHA-AGVQLHCPARVVALEQDADR----VR-LRL---DDGR--RLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHHh-CCCEEEcCCeEEEEEecCCe----EE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 4677888888887 59999999999999876332 32 322 3454 6899999999998874
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.1e-08 Score=103.56 Aligned_cols=35 Identities=37% Similarity=0.675 Sum_probs=32.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
.+||+|||||+||+++|+.|++.| +|+|+||....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 589999999999999999999999 99999998754
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=100.53 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=30.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcCCeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~ 115 (641)
|||+|||||+||+++|+.|++.-+|+|+||.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 799999999999999999987559999999864
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=106.33 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++..+.++.|++|+.++.|++|+.+ ++ +++||.+.+. .+....+.||.||||+|++..
T Consensus 206 ~l~~a~~~~nl~i~~~a~V~rI~~~-~~---~a~GV~~~~~-~~~~~~~~ak~VILaaGai~T 263 (560)
T PRK02106 206 YLDPALKRPNLTIVTHALTDRILFE-GK---RAVGVEYERG-GGRETARARREVILSAGAINS 263 (560)
T ss_pred hhccccCCCCcEEEcCCEEEEEEEe-CC---eEEEEEEEeC-CcEEEEEeeeeEEEccCCCCC
Confidence 3344444578999999999999987 44 8999998764 355556789999999998874
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.3e-08 Score=103.37 Aligned_cols=60 Identities=10% Similarity=0.342 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
-..+...|.+.+.+..+++++.++.++++..++++ +. +.+ .++ +++|+.||.|.|..+.+
T Consensus 103 r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~----v~-v~~---~~~---~~~adlvIgADG~~S~v 162 (374)
T PRK06617 103 NSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY----SI-IKF---DDK---QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe----EE-EEE---cCC---EEeeCEEEEeCCCCchh
Confidence 35678889988887656999999999999876443 32 322 233 69999999999988754
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.6e-08 Score=102.35 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+...|.+.+.+..+++++.++.|+++..++++ +. +.+ .+|+ +++|+.||.|+|..+.+
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~----~~-v~~---~~g~--~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG----NR-VTL---ESGA--EIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe----EE-EEE---CCCC--EEEeeEEEEecCCCchh
Confidence 466677777776668999999999999876443 21 322 3454 68999999999988753
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=106.22 Aligned_cols=157 Identities=17% Similarity=0.242 Sum_probs=84.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~ 159 (641)
..+||+|||||++||++|+.|++.| +|+|+||........ . ++ ...+ .+ .+.+..+ ++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~-r---a~--~l~~-~~-~~~l~~l-----Gl-------- 80 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGS-R---AI--CFAK-RS-LEIFDRL-----GC-------- 80 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCC-e---EE--EEcH-HH-HHHHHHc-----CC--------
Confidence 5689999999999999999999999 999999987432111 0 11 0100 00 0111000 00
Q ss_pred HHHHhHHHHHHHHHcCCcccc----CCCCCcc---cccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 160 VCTEGPDRIRELIAIGASFDR----GEDGNLH---LAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~----~~~g~~~---~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
.+.+.+.+..+.. ..++.+. .....+..++..+. ..-..+...|.+.+.+..+++++.++.+
T Consensus 81 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~q~~le~~L~~~~~~~~~v~v~~~~~v 149 (547)
T PRK08132 81 --------GERMVDKGVSWNVGKVFLRDEEVYRFDLLPEPGHRRPAFIN---LQQYYVEGYLVERAQALPNIDLRWKNKV 149 (547)
T ss_pred --------cHHHHhhCceeeceeEEeCCCeEEEecCCCCCCCCCCceEe---cCHHHHHHHHHHHHHhCCCcEEEeCCEE
Confidence 0111111211110 0001110 00001111111111 1223466777887876568999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+++..++++ +. +.+.+ .+| ..+++|+.||.|+|..+.
T Consensus 150 ~~i~~~~~~----v~-v~~~~-~~g-~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 150 TGLEQHDDG----VT-LTVET-PDG-PYTLEADWVIACDGARSP 186 (547)
T ss_pred EEEEEcCCE----EE-EEEEC-CCC-cEEEEeCEEEECCCCCcH
Confidence 999876443 22 23322 233 346899999999998885
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.1e-08 Score=103.11 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..|++++.++.|+++..++++ + -+.+ .+|+ +++|+.||-|.|..+.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~----v-~v~~---~~g~--~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 111 SVIHYALWQKAQQSSDITLLAPAELQQVAWGENE----A-FLTL---KDGS--MLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe----E-EEEE---cCCC--EEEeeEEEEeCCCCcHH
Confidence 4577888888877568999999999999876443 2 1222 3454 68999999999988753
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=102.46 Aligned_cols=63 Identities=16% Similarity=0.015 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+.+.|++.+.+ .|+++++++.++++...++. ...|.+. .+|+..+++|+.||-|.|..+.+
T Consensus 103 ~~l~~~Ll~~a~~-~gv~v~~~~~v~~i~~~~~~----~~~V~~~--~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 103 TEVTRDLMAARLA-AGGPIRFEASDVALHDFDSD----RPYVTYE--KDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHHHHHHHh-CCCeEEEeeeEEEEEecCCC----ceEEEEE--cCCeEEEEEeCEEEECCCCCCch
Confidence 3456777777766 59999999999998752122 2234432 35766789999999999988753
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-08 Score=104.33 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
...+...|.+.+.+ .|++++.++.|+++..+++ .+ .+.. .+|+ .+.|+.||.|+|..+.
T Consensus 110 r~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~----~v-~v~~---~~g~--~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 110 NRVLINALRKRAEA-LGIDLREATSVTDFETRDE----GV-TVTL---SDGS--VLEARLLVAADGARSK 168 (403)
T ss_pred hHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCC----EE-EEEE---CCCC--EEEeCEEEEcCCCChH
Confidence 45688889888887 4999999999999986633 22 1322 3454 5899999999998765
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=101.04 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=40.2
Q ss_pred cCceEeCCCCCc-ccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAGLQGET-NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD~~~~T-~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|+|.||+++|| ++|++||+|||+ .+... ........|.-.|+.+|+++...++.
T Consensus 257 ~g~i~vd~~l~~~~~~~Iya~GD~~--~~~~~--~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 257 DGFLRVDPTLQSLSHPHVFAAGDCA--VITDA--PRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCeEEECCccccCCCCCEEEeeeee--ecCCC--CCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 588999999998 999999999997 23221 11122345778899999888877644
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=102.35 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..|++++.++.++++..++++ + .+.. .+|+ +++|+.||.|+|..+.+
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQRDDDG----W-ELTL---ADGE--EIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe----E-EEEE---CCCC--EEEeCEEEEeCCCCchh
Confidence 4566788888776559999999999999765332 2 2322 3454 68999999999988753
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.1e-08 Score=102.91 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+.+..+++++.++.|+++..++ + .+ .+.. .+|+ .+.++.||.|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~---~~-~v~~---~~g~--~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHS-D---HV-ELTL---DDGQ--QLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-C---ee-EEEE---CCCC--EEEeeEEEEeCCCCCH
Confidence 45778888888875349999999999998763 3 23 2322 3554 5899999999998775
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=100.54 Aligned_cols=37 Identities=38% Similarity=0.629 Sum_probs=33.6
Q ss_pred ccccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.+..+||+|||||++|+++|+.|++.| +|+|+|+...
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 345689999999999999999999999 9999999864
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-07 Score=98.76 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=84.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
..||+|||||++||++|+.|++.| +|+|+|+...... ...|+.. . +...+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~----~g~g~~l--~---------------------~~~~~~l 56 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV----YGAGITL--Q---------------------GNALRAL 56 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc----CCceeee--c---------------------HHHHHHH
Confidence 469999999999999999999999 9999999764321 0112211 0 0000000
Q ss_pred HHHhHHHHHHHHHcCCcccc----CCCCCccccc----CCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006532 161 CTEGPDRIRELIAIGASFDR----GEDGNLHLAR----EGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~----~~~g~~~~~~----~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
... ...+.+.+.+.++.. +.+|...... ..+..++. ........+...|.+.+.+ .|++++.++.|
T Consensus 57 ~~~--gl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v 130 (375)
T PRK06847 57 REL--GVLDECLEAGFGFDGVDLFDPDGTLLAELPTPRLAGDDLPG---GGGIMRPALARILADAARA-AGADVRLGTTV 130 (375)
T ss_pred HHc--CCHHHHHHhCCCccceEEECCCCCEEEecCcccccccCCCC---cccCcHHHHHHHHHHHHHH-hCCEEEeCCEE
Confidence 000 001111222222110 1122211000 00000000 0112345677888888876 49999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
+++..++ + .+ .+.. .+|+ ++.|+.||.|+|..+..
T Consensus 131 ~~i~~~~-~---~~-~v~~---~~g~--~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 131 TAIEQDD-D---GV-TVTF---SDGT--TGRYDLVVGADGLYSKV 165 (375)
T ss_pred EEEEEcC-C---EE-EEEE---cCCC--EEEcCEEEECcCCCcch
Confidence 9997653 3 22 2332 3454 58999999999988753
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=102.00 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+.+.|.+.+.+..|++++.+++|+++..++++ +. +.. .+|. .+.|+.||.|+|..+.+
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~----~~-v~~---~~g~--~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQGS----VR-VTL---DDGE--TLTGRLLVAADGSHSAL 171 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe----EE-EEE---CCCC--EEEeCEEEEecCCChhh
Confidence 455677777766568999999999999765332 21 322 3443 58999999999988753
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-07 Score=102.13 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 212 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 212 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..++..+.++.|++|+.++.|++|+.+ ++ +++||.+.+. ++....+.||.||||+|++..
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~---ra~GV~~~~~-~~~~~~~~ak~VIlaAGai~S 256 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GN---RATGVEFKKG-GRKEHTEANKEVILSAGAINS 256 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CC---eEEEEEEEeC-CcEEEEEEeeeEEEccCCCCC
Confidence 334444554569999999999999987 55 8999988652 233444688999999998663
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-07 Score=98.72 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
..+...|.+.+++ .|++|+.+++|.+|..+ ++ ++.||.+. +|+ .+.|+.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~-~G~~i~~~~~V~~I~~~-~~---~~~gv~~~---~g~--~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEK-HGGQIRYRARVTKIILE-NG---KAVGVKLA---DGE--KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHH-CCCEEEeCCeeeEEEec-CC---cEEEEEeC---CCC--EEEcCEEEECCChHH
Confidence 5688889999988 59999999999999886 45 67788653 454 588999999999654
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-07 Score=100.49 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCC-cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 207 GREIERALLEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~g-v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
-..+...|.+.+.+..| ++|+.++.|+++..++++ .++ .+.+..+|+..+++||.||-|.|..+.
T Consensus 101 R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~---~~~--~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 101 RGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV---TVV--FLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc---eEE--EEeccCCCccceEEeeEEEECCCCCHH
Confidence 34567778887765335 579999999999876444 332 233333455568999999999998775
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=99.96 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..+++++.++.++++..++++ + .+.. .+|+ ++.|+.||.|+|..+..
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~----v---~v~~-~~g~--~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG----V---TVFD-QQGN--RWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc----e---EEEE-cCCC--EEecCEEEECCCcChHH
Confidence 4577788888876556999999999999865332 2 2222 3454 58999999999988865
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=102.14 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+.+ .|++++.++.++++..++++ +. +.. .+|+ +++|+.||.|+|..+.
T Consensus 112 ~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~----v~-v~~---~~g~--~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 112 RVVQDALLERLHD-SDIGLLANARLEQMRRSGDD----WL-LTL---ADGR--QLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHHhc-CCCEEEcCCEEEEEEEcCCe----EE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 3566788888877 49999999999999876432 21 222 3453 5899999999998875
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=100.10 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=47.0
Q ss_pred cCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 220 SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 220 ~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+..+++|+.++.|++|+.++++ ..+|.||.+.+..+|+.+.++|+.||||+|+...
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~-~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIet 280 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETN-ESEIEAALVRDLLSGDRFEIKADVYVLACGAVHN 280 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCC-CceeEEEEEEECCCCcEEEEECCEEEEccCchhh
Confidence 3468999999999999987432 1279999999876788889999999999999875
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-07 Score=98.50 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+ .|+.++.++.++.+...++. ..+|.+. .+|+...++|+.||-|.|..+.+
T Consensus 103 ~~l~~~L~~~~~~-~g~~~~~~~~~v~~~~~~~~----~~~V~~~--~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 103 TEVTRDLMEAREA-AGLTTVYDADDVRLHDLAGD----RPYVTFE--RDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHHHHHHHh-cCCeEEEeeeeEEEEecCCC----ccEEEEE--ECCeEEEEEeCEEEECCCCchhh
Confidence 3566778887776 48999999888887652222 1234442 25666689999999999988853
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=92.34 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
++..+.+.|...+++ .++++..++.|+++..++++ ..+ ...++ ..++|+.||+|||.++
T Consensus 80 ~~~~v~~yl~~~~~~-~~l~i~~~~~V~~v~~~~~~-------w~v-~~~~~--~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 80 SGEEVLDYLQEYAER-FGLEIRFNTRVESVRRDGDG-------WTV-TTRDG--RTIRADRVVLATGHYS 138 (203)
T ss_dssp BHHHHHHHHHHHHHH-TTGGEETS--EEEEEEETTT-------EEE-EETTS---EEEEEEEEE---SSC
T ss_pred CHHHHHHHHHHHHhh-cCcccccCCEEEEEEEeccE-------EEE-EEEec--ceeeeeeEEEeeeccC
Confidence 356677777777766 59999999999999987443 222 23455 4688999999999765
|
... |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-07 Score=98.63 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+...|.+.+.+..|++++.++.|+++..++++ + .+.. .+|+ .+.|+.||.|+|..+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY----V-RVTL---DNGQ--QLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe----E-EEEE---CCCC--EEEeeEEEEecCCChH
Confidence 4577888888876449999999999999876432 2 2322 3454 6899999999998764
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-07 Score=100.22 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..|++++.++.|+++..++++ + .+.. .+|+ .++|+.||.|.|..+.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE----A-WLTL---DNGQ--ALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe----E-EEEE---CCCC--EEEeCEEEEeCCCCChh
Confidence 3466778888876568999999999999876432 2 2332 3554 68999999999987743
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.9e-08 Score=107.27 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=42.5
Q ss_pred ccCceEeCC-CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhcc
Q 006532 429 MCGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 429 ~~GGI~vD~-~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
..|.|.||. .++|++||+||+||++ .|. ..+..|+-.|+.||.++..++...
T Consensus 394 ~~G~i~vd~~~~~ts~~~Vfa~GD~~-~g~--------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 394 GRGVVQVDPNFMMTGRPGVFAGGDMV-PGP--------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCCEEeCCCCccCCCCCEEeccCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346789998 6789999999999997 332 357789999999999999988644
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-07 Score=99.72 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=40.7
Q ss_pred CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEE-----EcCEEEEcCCCCCc
Q 006532 221 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF-----ISKVTLLASGGAGH 276 (641)
Q Consensus 221 ~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i-----~Ak~VVlAtGg~~~ 276 (641)
..|++|+.++.|++|+.+++++..+++||.+.+. +|..+.+ .++.||||+|+++.
T Consensus 232 ~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~-~g~~~~~~~~~~~~~eVILsAGai~s 291 (587)
T PLN02785 232 PNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDE-NGNQHQAFLSNNKGSEIILSAGAIGS 291 (587)
T ss_pred CCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEEC-CCceEEEEeecccCceEEecccccCC
Confidence 3689999999999999874322237999998774 3443332 24899999999874
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=96.32 Aligned_cols=36 Identities=11% Similarity=0.381 Sum_probs=30.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHES 118 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g 118 (641)
.+|+|||||++|+++|..|.+.+ +|+|+|+....|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~ 40 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGV 40 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCc
Confidence 37999999999999999998765 7999999765543
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.2e-07 Score=99.24 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=32.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.++||+|||||++|+++|+.|++.| +|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4699999999999999999999999 999999975
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.4e-07 Score=88.89 Aligned_cols=190 Identities=14% Similarity=0.170 Sum_probs=100.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhc----C-CeEEEEecCCC-CCccccccCceeeccCCCCC--HHHHHHHHHHhc-cC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPH-ESNTNYAQGGVSAVLCPSDS--VESHMQDTIVAG-AY 150 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~----G-~V~llek~~~~-~g~s~~a~ggi~~~~~~~d~--~~~~~~d~~~~g-~~ 150 (641)
..+|||||||||..|++.|+.|.++ | +|+||||+... .++|..+.||||...+.... ...+-.+.++.. .+
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~eh 163 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREH 163 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHh
Confidence 4589999999999999999999763 6 99999998754 35566688999876653322 222222333211 11
Q ss_pred C--------------------CCHHHHHHHHHHhHHHHHHHHHcCCccccCC-C---CCcc-cccCCCcc-ccceeeccC
Q 006532 151 L--------------------CDDETVRVVCTEGPDRIRELIAIGASFDRGE-D---GNLH-LAREGGHS-HHRIVHAAD 204 (641)
Q Consensus 151 ~--------------------~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~-~---g~~~-~~~~gg~~-~~r~~~~~~ 204 (641)
+ ..++-+..+...+ +--.+.|....-.. + .++. +.-+|-.- ...+-..+.
T Consensus 164 l~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~----kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGw 239 (509)
T KOG2853|consen 164 LGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNS----KVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGW 239 (509)
T ss_pred hccccCCCCCcccCCCceEEEcchhhHHHHHHhH----HHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccc
Confidence 1 1111111111110 11112232211000 0 0000 00000000 000000011
Q ss_pred CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec---------CCC----CCceEEEEEEEecCCCeEEEEEcCEEEEcC
Q 006532 205 MTGREIERALLEAVVSDPNISVFEHHFAIDLLTT---------LDG----PDAVCHGVDTLNVETQEVVRFISKVTLLAS 271 (641)
Q Consensus 205 ~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~---------~~g----~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 271 (641)
.....+...+.+++.. .|+.+..+ +|+++..+ +++ ...++.|+++. ..++....+++..+|+|+
T Consensus 240 fdpw~LLs~~rrk~~~-lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~-m~d~~~r~vk~al~V~aA 316 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAIT-LGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVR-MNDALARPVKFALCVNAA 316 (509)
T ss_pred cCHHHHHHHHHHHhhh-hcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEe-cCchhcCceeEEEEEecc
Confidence 2345677777777776 59988877 66666543 222 11246677664 456666789999999999
Q ss_pred CCCCc
Q 006532 272 GGAGH 276 (641)
Q Consensus 272 Gg~~~ 276 (641)
|+++.
T Consensus 317 Ga~s~ 321 (509)
T KOG2853|consen 317 GAWSG 321 (509)
T ss_pred CccHH
Confidence 99874
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=97.49 Aligned_cols=155 Identities=22% Similarity=0.306 Sum_probs=89.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC--CCccccccCceeec--cCCCCCHHHHHHHHHHhccCCCCH
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH--ESNTNYAQGGVSAV--LCPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~--~g~s~~a~ggi~~~--~~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
+..|||+|||||-||+-||..+++.| +.+|+...-.. .-+.+-+-||+.-- ...-|...-.. ...||.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~-------~rvcD~ 98 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLC-------SRVCDQ 98 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchH-------hhhhhh
Confidence 55799999999999999999999999 99999875432 22223344666311 11111100000 011222
Q ss_pred HHHHHHHHHhHHHHHHHHH-cCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEE
Q 006532 155 ETVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAI 233 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~ 233 (641)
..+ ....|.. .|-.+. -+| .....+.+...+.+.+...++.+|+++ .|.
T Consensus 99 s~v---------q~k~LNrs~GPAVw----------------g~R----AQiDR~lYkk~MQkei~st~nL~ire~-~V~ 148 (679)
T KOG2311|consen 99 SGV---------QYKVLNRSKGPAVW----------------GLR----AQIDRKLYKKNMQKEISSTPNLEIREG-AVA 148 (679)
T ss_pred hhh---------hHHHhhccCCCccc----------------ChH----HhhhHHHHHHHHHHHhccCCcchhhhh-hhh
Confidence 221 1111211 010000 011 111234456667777776678999988 677
Q ss_pred EEEecCCC-CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 234 DLLTTLDG-PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 234 ~l~~~~~g-~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+|+..+.+ ...+|.||+..| |. .|.|+.|||.||-|-+
T Consensus 149 dliv~~~~~~~~~~~gV~l~d---gt--~v~a~~VilTTGTFL~ 187 (679)
T KOG2311|consen 149 DLIVEDPDDGHCVVSGVVLVD---GT--VVYAESVILTTGTFLR 187 (679)
T ss_pred heeeccCCCCceEEEEEEEec---Cc--EeccceEEEeecccee
Confidence 88765322 235688998864 54 6999999999998754
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-07 Score=96.41 Aligned_cols=34 Identities=47% Similarity=0.725 Sum_probs=31.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 117 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~ 117 (641)
||+|||||+||+++|+.|++.| +|+|||+.+..+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~ 35 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP 35 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 8999999999999999999999 999999986443
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-06 Score=94.98 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecC-CCeEEEEEcCEEEEcCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE-TQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~-~g~~~~i~Ak~VVlAtGg~ 274 (641)
..+.+.|.+.+.+ .+++++.++.++++..+.++ +.+.... +|+ ..++|+.||.|+|+.
T Consensus 115 ~~l~~~L~~~~~~-~g~~~~~~~~v~~~~~~~~~-------v~v~~~~~~g~-~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRG-TPVRWLTSTTAHAPAQDADG-------VTLALGTPQGA-RTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHh-CCCEEEcCCeeeeeeecCCe-------EEEEECCCCcc-eEEeeeEEEECCCCC
Confidence 4677888888887 48999999999998765333 3332111 232 469999999999964
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.3e-07 Score=98.23 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=36.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
.+||+|||||..||+||..|+++| +|+|+||....||..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcce
Confidence 589999999999999999999999 999999999887743
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.8e-07 Score=95.91 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+..+++++.++.|+++..++++ + -+.+.+..++ ..+.||.||-|.|..+.+
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~----v-~v~~~~~~~~--~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS----I-TATIIRTNSV--ETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc----e-EEEEEeCCCC--cEEecCEEEECCCccHhH
Confidence 4677888888876568999999999999865332 3 2333332223 268999999999988854
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.9e-07 Score=96.87 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=34.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...+|+|||||+|||+||..|.+.| +|+|+||....||.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~ 48 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce
Confidence 3579999999999999999999999 99999998866543
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-07 Score=86.49 Aligned_cols=144 Identities=20% Similarity=0.280 Sum_probs=88.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
.+.||+|||+|.|||+||+..+++. +|.|||..-.++|++ |-+|-+.
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa-WLGGQLF----------------------------- 124 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA-WLGGQLF----------------------------- 124 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc-cccchhh-----------------------------
Confidence 3679999999999999999999664 899999987766544 2222110
Q ss_pred HHHHHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
..++-+. .+--+|.+.|++++.+ |.|... .| ..-+...+..++...++|++++-+-|.+|+.
T Consensus 125 SAMvvRK-PAhLFL~EigvpYede--gdYVVV----------KH-----AALFtSTvmsk~LalPNVKLFNAtavEDLiv 186 (328)
T KOG2960|consen 125 SAMVVRK-PAHLFLQEIGVPYEDE--GDYVVV----------KH-----AALFTSTVMSKVLALPNVKLFNATAVEDLIV 186 (328)
T ss_pred hhhhhcC-hHHHHHHHhCCCcccC--CCEEEE----------ee-----HHHHHHHHHHHHhcCCcceeechhhhhhhhc
Confidence 0011011 1123567889998754 333221 11 2234555556666679999999999999987
Q ss_pred cCC-CCCceEEEEEEE----ecCCCe-----EEEEEcCEEEEcCC
Q 006532 238 TLD-GPDAVCHGVDTL----NVETQE-----VVRFISKVTLLASG 272 (641)
Q Consensus 238 ~~~-g~~~~v~Gv~~~----~~~~g~-----~~~i~Ak~VVlAtG 272 (641)
.+. ..+-+|.||+.. ....|. .-.|.|+.||-+||
T Consensus 187 k~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tG 231 (328)
T KOG2960|consen 187 KPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTG 231 (328)
T ss_pred ccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccC
Confidence 631 113367777542 111111 23567777776666
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.9e-07 Score=94.98 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=32.2
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
...||+|||||++||++|+.|++.| +|+|+||.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3479999999999999999999999 9999999863
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.3e-07 Score=94.13 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=48.8
Q ss_pred cCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCCCCccch-hhhHHHHHHHHHHHHHH
Q 006532 411 YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLAS-NSLLEALVFARRAVQPS 482 (641)
Q Consensus 411 ~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g-~sl~~a~v~G~~Ag~~a 482 (641)
.|+.|.....+. ....-..|+|.||+.+||++||+||+||++..-+++-+.... --...|..+|+-|+.++
T Consensus 309 iG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai 380 (478)
T KOG1336|consen 309 IGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAI 380 (478)
T ss_pred eccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhh
Confidence 366666665555 334456899999999999999999999998655555443322 23455677777666543
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=94.36 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCC--CcEEEcceEEEEEEec-----CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcC
Q 006532 208 REIERALLEAVVSDP--NISVFEHHFAIDLLTT-----LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~--gv~i~~~~~v~~l~~~-----~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+...|.+.+.+.. +++++.+++|+++..+ +++ .++.+. ..+|+ +++|+.||.|.|..+.+
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~-----~~v~v~-~~~g~--~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS-----NWVHIT-LSDGQ--VLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC-----CceEEE-EcCCC--EEEeeEEEEecCCCChh
Confidence 457778888887754 5999999999999752 111 122222 23564 69999999999998853
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-06 Score=86.48 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
|-.+...|..++++ .|..++.+-.|.+.... ++ +|..+... +...+.++|+..|||||+|
T Consensus 257 GiRl~~~L~~~f~~-~Gg~~m~Gd~V~~a~~~-~~---~v~~i~tr---n~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 257 GIRLHNQLQRQFEQ-LGGLWMPGDEVKKATCK-GG---RVTEIYTR---NHADIPLRADFYVLASGSF 316 (421)
T ss_pred hhhHHHHHHHHHHH-cCceEecCCceeeeeee-CC---eEEEEEec---ccccCCCChhHeeeecccc
Confidence 44556777778877 58899999899888776 45 67777665 4455689999999999977
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=93.71 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
||+|||||++||++|+.|++.| +|+|+||...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 8999999999999999999999 9999999864
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.7e-07 Score=95.62 Aligned_cols=179 Identities=21% Similarity=0.210 Sum_probs=96.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-C-eEEEEecCCCCCccccccCceeeccCCCCCHHHHH-HHHH------HhccCC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHM-QDTI------VAGAYL 151 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~-~d~~------~~g~~~ 151 (641)
...||+|||||.+|+.+|+.+|+.| + .+++|+....+|++..+. |.....-+.|..-+.+ .+.. ..-.++
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhta-gl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl 116 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTA-GLLWQLFPSDVELQLIAHTSRVLYRELEEETGL 116 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccc-cceeeccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 4589999999999999999999999 7 566677766666654444 4433333333322221 1100 000000
Q ss_pred C--CHHHHHHHHHHhHHHHHHH---HH----cCCccccC---CCCC-ccc----ccCCCccccceeeccC--CcHHHHHH
Q 006532 152 C--DDETVRVVCTEGPDRIREL---IA----IGASFDRG---EDGN-LHL----AREGGHSHHRIVHAAD--MTGREIER 212 (641)
Q Consensus 152 ~--~~~~~~~~~~~~~~~i~~l---~~----~Gv~~~~~---~~g~-~~~----~~~gg~~~~r~~~~~~--~~g~~~~~ 212 (641)
. -...-..+...+...++.+ .. +|++..-. +.-. +.+ ...++ ...+.| .....++.
T Consensus 117 ~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~-----Ly~P~DG~~DP~~lC~ 191 (856)
T KOG2844|consen 117 HTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGG-----LYSPGDGVMDPAGLCQ 191 (856)
T ss_pred CcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheee-----eecCCCcccCHHHHHH
Confidence 0 0000000111122222222 22 23221100 0000 000 00000 001111 23567888
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+|...+.+ .|+.|++++.|++|....++ ..||.. ..| .|++..||.|||-+++
T Consensus 192 ala~~A~~-~GA~viE~cpV~~i~~~~~~----~~gVeT---~~G---~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 192 ALARAASA-LGALVIENCPVTGLHVETDK----FGGVET---PHG---SIETECVVNAAGVWAR 244 (856)
T ss_pred HHHHHHHh-cCcEEEecCCcceEEeecCC----ccceec---cCc---ceecceEEechhHHHH
Confidence 99888887 59999999999999987443 446643 456 5999999999998775
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-05 Score=89.19 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
...+..+|.+.+++ .|++|+.+++|++|+.+ ++ ++.|+++.+..+|+...+.||.||+++-.
T Consensus 231 ~~~l~~aL~~~~~~-~G~~i~~~~~V~~I~~~-~~---~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKR-DGGNLLTGQRVTAIHTK-GG---RAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHh-cCCEEeCCceEEEEEEe-CC---eEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 45688999999987 59999999999999987 44 57788775432333346899999999885
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-06 Score=94.36 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCC-CcEEEcceEEEEEEecCCCCCceEEEEEEEec---CCCeEEEEEcCEEEEcCCCCCcC
Q 006532 209 EIERALLEAVVSDP-NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---ETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 209 ~~~~~l~~~~~~~~-gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
.+...|.+.+.+.. ++++..++.++++..++++. ..| -+.+.+. .+|+..+++||.||-|.|+.+.+
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~-~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGE-YPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCC-CCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 46677777776632 26788899999998763220 112 2444433 14655689999999999998853
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.6e-06 Score=83.90 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEec-CCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTT-LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPST 281 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~-~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~ 281 (641)
....++.|...+++ .|+.++.+..|+.+-.. +++ ..++|.. .+|. .+.||.+|+++|+|-..+..+
T Consensus 152 a~kslk~~~~~~~~-~G~i~~dg~~v~~~~~~~e~~---~~v~V~T---t~gs--~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 152 AAKSLKALQDKARE-LGVIFRDGEKVKFIKFVDEEG---NHVSVQT---TDGS--IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHH-cCeEEecCcceeeEeeccCCC---ceeEEEe---ccCC--eeecceEEEEecHHHHhhcCc
Confidence 34566788888887 59999999988877533 233 3444443 3454 589999999999998655443
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-05 Score=87.93 Aligned_cols=62 Identities=11% Similarity=-0.062 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
..+...|.+.+.+ .|++|+.+++|++|..++++ .+.++.. +..+|+...+.|+.||+|+-..
T Consensus 218 ~~l~~~L~~~l~~-~g~~i~~~~~V~~I~~~~~~---~v~~~~~-~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEA-LGGKVVLNAKVVGLHHDGDG---RIAVVVV-NDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHH-cCCEEEeCCEEEEEEEcCCc---EEEEEEE-EcCCCCEEEEEcCEEEECCCHH
Confidence 4577888888877 49999999999999987544 4444433 3234555568999999998753
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.2e-06 Score=90.24 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=31.1
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
||+|||||+|||++|+.|++.| +|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999 99999998753
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-06 Score=86.19 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~ 115 (641)
..|||||||.+|+.+|..|.++ + +|+|||+...
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4699999999999999999986 5 8999999875
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.9e-06 Score=89.44 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=31.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
||+|||||++|+++|+.|++.| +|+|+||.+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 8999999999999999999999 99999998653
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.7e-06 Score=89.29 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
..+...|.+.+++ .|++|..++.|++|..++++ +++|+.+.+...++...+.|+.||+|+..
T Consensus 213 ~~l~~~l~~~l~~-~g~~i~l~~~V~~I~~~~~~---~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITS-RGGEVRLNSRLKEIVLNEDG---SVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHh-cCCEEeCCCeeEEEEECCCC---CEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 4577888888877 49999999999999875555 68888875432223336899999999964
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=84.55 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
-.+.+.|.+.+.+..|+++..+++|++|.+.+|| + --|.+.+..+|+...|+|+.|++.+||.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg---~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDG---R-WEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCC---C-EEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 4577888888888679999999999999988666 2 23666777888889999999999999887
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-05 Score=87.28 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
..+...|.+.+++ .|++|+.++.|++|..+ ++ ++.||.. .+|+ .+.|+.||+|++.
T Consensus 219 ~~l~~al~~~~~~-~G~~i~~~~~V~~i~~~-~~---~~~~V~~---~~g~--~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAED-LGGELRLNAEVIRIETE-GG---RATAVHL---ADGE--RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHH-CCCEEEECCeEEEEEee-CC---EEEEEEE---CCCC--EEECCEEEECCcH
Confidence 5678889888887 49999999999999876 44 6777765 3454 5789999999884
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-06 Score=83.64 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
+|+|||+|+||++||+.|.+.| +|+|+||+.-.+|
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 7999999999999999999999 9999999986555
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=9e-06 Score=90.53 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCC-eEEEEEcCEEEEcCCCCCc
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g-~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+...+.++++++|++++.|+.|+.+ .+ +++|+.+.....+ ....+.++.||||+|++..
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~-~~---r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLE-GD---RAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEE-CC---eeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 44445666689999999999999998 44 7888888754433 3556778999999999875
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-05 Score=89.54 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=32.5
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
....+|+|||||++||++|+.|++.| +|+|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45689999999999999999999999 999999975
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.4e-05 Score=83.50 Aligned_cols=57 Identities=11% Similarity=-0.057 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
..+...|.+.+++ .|++|+.++.|++|..++++ ++.++.+ .+|+ .+.|++||+|+..
T Consensus 308 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g---~v~~v~~---~~G~--~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQS-LGGEVRLNSRIKKIELNDDG---TVKHFLL---TNGS--VVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHh-cCCEEEeCCeeeEEEECCCC---cEEEEEE---CCCc--EEECCEEEECCCH
Confidence 5677888888877 49999999999999886565 6666655 3464 5899999999863
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=86.89 Aligned_cols=32 Identities=34% Similarity=0.661 Sum_probs=29.6
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~ 115 (641)
.|+|||||++||++|+.|++.| +|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6999999999999999999986 8999999764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=87.10 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=47.0
Q ss_pred HHHHHHHHc-CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEc-CEEEEcCCCCCc
Q 006532 212 RALLEAVVS-DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGH 276 (641)
Q Consensus 212 ~~l~~~~~~-~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGg~~~ 276 (641)
+++.+.+.. +.++.+..++.|+.++.|..+ ++..|+.... +.|+.++++| |-|||+.|+++.
T Consensus 256 ~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~--~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~S 319 (623)
T KOG1238|consen 256 KAYLKPIRLTRPNLHISRNAAVTRVLIDPAG--KRAKGVEFVR-DGGKEHTVKARKEVILSAGAINS 319 (623)
T ss_pred hhhhhhhhccCccccccccceEEEEEEcCCC--ceEEEEEEEe-cCceeeeecccceEEEeccccCC
Confidence 344444444 468889999999999998666 4788888763 3378888888 789999998874
|
|
| >TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-05 Score=87.04 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
....++..+.+.+.+ .|++|+++++|+++..+ ++ ++.|+.+.+..+|+...|+|+.||+|||.++.
T Consensus 126 dp~~l~~al~~~A~~-~Ga~i~~~t~V~~i~~~-~~---~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 126 DPFRLVAANVLDAQE-HGARIFTYTKVTGLIRE-GG---RVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred CHHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEE-CC---EEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 367788888888887 49999999999999876 44 68899888777787778999999999998875
|
Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=85.32 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=37.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 121 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~ 121 (641)
.+|||+|||+|.+|+.+|..|++.| +|+++|+....||...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 4699999999999999999999999 9999999998877543
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=85.81 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.0
Q ss_pred cEEEECccHHHHHHHHHH--HhcC-CeEEEEecCCC
Q 006532 84 DFSVIGSGVAGLCYALEV--AKHG-TVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~a--a~~G-~V~llek~~~~ 116 (641)
||+|||||+||+++|+.| ++.| +|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 7778 99999987643
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=87.39 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCC
Q 006532 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 279 (641)
Q Consensus 207 g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~ 279 (641)
...+-..|.+.+.+. ||++++++ |+++..+++| .|.+|.. .+|+ +|+||.||-|||-.+.+-.
T Consensus 153 R~~fd~~L~~~A~~~-Gv~~~~g~-V~~v~~~~~g---~i~~v~~---~~g~--~i~ad~~IDASG~~s~L~~ 215 (454)
T PF04820_consen 153 RAKFDQFLRRHAEER-GVEVIEGT-VVDVELDEDG---RITAVRL---DDGR--TIEADFFIDASGRRSLLAR 215 (454)
T ss_dssp HHHHHHHHHHHHHHT-T-EEEET--EEEEEE-TTS---EEEEEEE---TTSE--EEEESEEEE-SGGG-CCCC
T ss_pred HHHHHHHHHHHHhcC-CCEEEeCE-EEEEEEcCCC---CEEEEEE---CCCC--EEEEeEEEECCCccchhhH
Confidence 356777888888884 99999985 7777777666 7777765 3454 6999999999997664433
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-05 Score=85.45 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=34.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-C-eEEEEecCCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHES 118 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~~~~g 118 (641)
...+||+|||||++|+++|+.|.+.| . ++|+||....+|
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 45689999999999999999999999 6 999999975544
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=66.92 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=31.1
Q ss_pred EECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006532 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 121 (641)
Q Consensus 87 VIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~ 121 (641)
|||||++||+||+.|++.| +|+|+||....+|...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 8999999999999999999 9999999998876553
|
... |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=81.79 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=33.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
-+|+|||||++||++|+.+.++| +|+|+|+...+.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 48999999999999999999999 99999997766554
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.4e-05 Score=81.74 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC--CCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTL--DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~--~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
.+..+...|.+.+++ .|++|+.++.|++|..++ ++ ..++.|+.+.+. ++ ...+.||+||+|+...
T Consensus 217 ~~~~l~~pl~~~L~~-~Gg~i~~~~~V~~I~~~~~~~~-~~~v~~v~~~~g-~~-~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 217 PDKYLTKPILEYIEA-RGGKFHLRHKVREIKYEKSSDG-STRVTGLIMSKP-EG-KKVIKADAYVAACDVP 283 (474)
T ss_pred cchhHHHHHHHHHHH-CCCEEECCCEEEEEEEecCCCC-ceeEEEEEEecC-Cc-ceEEECCEEEECCChH
Confidence 344566778888888 599999999999998753 22 013677766321 11 1258899999999954
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=78.72 Aligned_cols=170 Identities=12% Similarity=0.096 Sum_probs=97.3
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-------CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-------TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-------~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~ 154 (641)
...|+|||||+.|.++|+.|++++ .|+|+|+..+.+|+|..++|...-+-. +
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~---------------------~ 68 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQ---------------------P 68 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhC---------------------C
Confidence 368999999999999999999864 589999999999988887664432211 1
Q ss_pred HHHHHHHHHhHHH-------HHHHHHcCCc--------cccCCCCCcccccCCC--------cccccee---eccCCcHH
Q 006532 155 ETVRVVCTEGPDR-------IRELIAIGAS--------FDRGEDGNLHLAREGG--------HSHHRIV---HAADMTGR 208 (641)
Q Consensus 155 ~~~~~~~~~~~~~-------i~~l~~~Gv~--------~~~~~~g~~~~~~~gg--------~~~~r~~---~~~~~~g~ 208 (641)
+.+..++..+... ++-..+||.. .+.+ +-......+|- ....++. .......+
T Consensus 69 s~~~~La~lsfkLh~~LsdeydGvnnwgYRaltTws~ka~~e-n~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~ 147 (380)
T KOG2852|consen 69 SIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWE-NTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPY 147 (380)
T ss_pred cccchhhHHHHHHHHHHHHhhcCcccccceeeeEEEEEeecc-cCCcccCCcchhhhhhHHhhhheeccCCCccceeCHH
Confidence 1111111111111 1111223321 1100 00000000110 0001100 01122457
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCCC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 279 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~ 279 (641)
.+.+.++..+++..||+++.+ .|.++-. +.+ ++.++.... ..+..+...+..||+|.|.|...+.
T Consensus 148 lFc~~i~sea~k~~~V~lv~G-kv~ev~d-Ek~---r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskll 212 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFG-KVKEVSD-EKH---RINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLL 212 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEe-eeEEeec-ccc---cccccchhh-hcCceEEeeeeEEEEecCCCchhhc
Confidence 788999999999878999999 5677753 344 666654432 1233446678999999999986543
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.8e-05 Score=73.13 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=26.5
Q ss_pred EEECccHHHHHHHHHHHhc-----C-CeEEEEecCC
Q 006532 86 SVIGSGVAGLCYALEVAKH-----G-TVAVITKAEP 115 (641)
Q Consensus 86 lVIGgG~AGl~AA~~aa~~-----G-~V~llek~~~ 115 (641)
+|||+|++|++++..|.+. . +|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999876 3 7999999766
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.7e-05 Score=82.78 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=33.6
Q ss_pred cEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCcccc
Q 006532 84 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNY 122 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s~~ 122 (641)
||+|||||+||+++|+.|++. | +|+|+|+.+..+++..|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw 42 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTW 42 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccc
Confidence 899999999999999999987 8 99999998765554333
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=83.74 Aligned_cols=39 Identities=36% Similarity=0.427 Sum_probs=35.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
+..-++||||||+||+.||+.|++.| +|.||||.+..||
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 44568999999999999999999999 9999999998765
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.3e-05 Score=82.92 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=33.7
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
.-+|+|||+|+|||++|..|.+.| .|+++||....+|
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG 43 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc
Confidence 459999999999999999999999 9999999987543
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.7e-05 Score=87.31 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=30.0
Q ss_pred cEEEECccHHHHHHHHHHHhc--C-CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~ 115 (641)
+|+|||||+|||+||+.|++. | +|+|+||...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 8 9999999874
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.8e-05 Score=81.27 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=34.7
Q ss_pred ceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 432 GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 432 GI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
||.||..+||++|.+||+|||+ -..|.++ | -.+.++-.++.++.++..
T Consensus 258 GIvvnd~mqTsdpdIYAvGEca--e~~g~~y--G-LVaP~yeq~~v~a~hl~~ 305 (793)
T COG1251 258 GIVVNDYMQTSDPDIYAVGECA--EHRGKVY--G-LVAPLYEQAKVLADHLCG 305 (793)
T ss_pred CeeecccccccCCCeeehhhHH--HhcCccc--e-ehhHHHHHHHHHHHHhcc
Confidence 8999999999999999999998 2333221 1 245666667777766643
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=80.09 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=30.3
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
.|+|||||++||+||..|.+.| +|+++||....||
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG 38 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG 38 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence 5999999999999999999999 9999999987654
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00019 Score=82.78 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=31.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
....|+|||||||||+||+.|++.| +|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4578999999999999999999999 999999864
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00034 Score=77.97 Aligned_cols=73 Identities=5% Similarity=-0.014 Sum_probs=51.1
Q ss_pred eeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC-CceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP-DAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 199 ~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~-~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
..++....+..+...+.+.++++ |++|+.++.|.+|..+.++. ..++.|+.+.+ .++...+.||+||+|++..
T Consensus 286 l~~~~Gg~~~~l~~pl~~~L~~~-Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 286 LRMLKGSPDVRLSGPIAKYITDR-GGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVP 359 (569)
T ss_pred eeecCCCchHHHHHHHHHHHHHc-CCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHH
Confidence 33434445556888899999884 99999999999999863211 11477887631 2333358899999999954
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00025 Score=57.38 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=29.8
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
|+|||||..|+-.|..+++.| +|+|+++.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 799999999999999999999 99999998753
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00062 Score=72.95 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=31.8
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g 118 (641)
.|+|||||+|||+||++|.+++ .|+|+|++...||
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 4899999999999999999998 7999999877665
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.7e-05 Score=76.57 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 209 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 209 ~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+..++.+.+++ .|.+|++...|.+|+.| +| +++||.+. +|. .+++|.||--++-+-
T Consensus 265 avs~aia~~~~~-~GaeI~tka~Vq~Illd-~g---ka~GV~L~---dG~--ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 265 AVSFAIAEGAKR-AGAEIFTKATVQSILLD-SG---KAVGVRLA---DGT--EVRSKIVVSNATPWD 321 (561)
T ss_pred HHHHHHHHHHHh-ccceeeehhhhhheecc-CC---eEEEEEec---CCc--EEEeeeeecCCchHH
Confidence 466778888877 59999999999999998 57 89999885 565 578888887777543
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.5e-05 Score=81.33 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=35.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 121 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~ 121 (641)
+||+|||||+||+++|..|++.| +|+|+|+....+|.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence 69999999999999999999999 9999999887776543
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00084 Score=71.86 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 278 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 278 (641)
....++..|.+.+.+ |++++++++|+++..+ ++ . .++. +.+|+ .+.|+.||+|+|.++...
T Consensus 133 dp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~-~~---~-~~v~---t~~g~--~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 133 SPPQLCRALLAHAGI--RLTLHFNTEITSLERD-GE---G-WQLL---DANGE--VIAASVVVLANGAQAGQL 193 (381)
T ss_pred ChHHHHHHHHhccCC--CcEEEeCCEEEEEEEc-CC---e-EEEE---eCCCC--EEEcCEEEEcCCcccccc
Confidence 456788888888765 9999999999999875 33 2 2232 23453 479999999999887543
|
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. |
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00057 Score=75.35 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=30.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||.+|+-+|..+++.| +|+|+++.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 48999999999999999999999 9999998753
|
|
| >TIGR02352 thiamin_ThiO glycine oxidase ThiO | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00051 Score=71.96 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCcCC
Q 006532 206 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 278 (641)
Q Consensus 206 ~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~ 278 (641)
....+...|.+.+.+ .|++++++++|++|..+ ++ .+.+|.. .+| .++|+.||+|+|.+...+
T Consensus 135 ~p~~l~~~l~~~~~~-~g~~~~~~~~v~~i~~~-~~---~~~~v~~---~~g---~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 135 DPRALLKALEKALEK-LGVEIIEHTEVQHIEIR-GE---KVTAIVT---PSG---DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred ChHHHHHHHHHHHHH-cCCEEEccceEEEEEee-CC---EEEEEEc---CCC---EEECCEEEEcCChhhhhc
Confidence 356788899999888 49999999999999875 44 5666643 344 589999999999887643
|
This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. |
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.3e-05 Score=82.27 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=36.4
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
....+|+|||||+|||+||..|.+.| +|+|+|.....||..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRI 54 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCcee
Confidence 34679999999999999999999999 999999988777643
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.7e-05 Score=81.23 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=34.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
+|+|||||++||+||+.|+++| +|+|+|+....||..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 5899999999999999999999 999999999887754
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.55 E-value=8e-05 Score=82.72 Aligned_cols=40 Identities=33% Similarity=0.467 Sum_probs=35.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhc-C-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~llek~~~~~g~s 120 (641)
..+||+|||||++||+||+.|++. | +|+|+|+....||..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 357999999999999999999999 9 999999998777643
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=69.17 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=27.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 115 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~ 115 (641)
.+|+|+||.||++|+-|+.|.+.+ +++.+||.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999998876 9999998763
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0016 Score=68.31 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=75.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHH
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~ 157 (641)
....|+|||||.++.-.+..|.+.+ +|.++-|+....- .++++ ....+.+|+.+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~--------------~d~s~---------f~ne~f~P~~v 245 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP--------------MDDSP---------FVNEIFSPEYV 245 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------------------C---------CHHGGGSHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC--------------Ccccc---------chhhhcCchhh
Confidence 4578999999999999999999876 6888988653110 00110 01123556666
Q ss_pred HHHHHHhHHHHHHHH-HcC-CccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHH-----HHHcCCCcEEEcce
Q 006532 158 RVVCTEGPDRIRELI-AIG-ASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLE-----AVVSDPNISVFEHH 230 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~-~~G-v~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~-----~~~~~~gv~i~~~~ 230 (641)
+.+.....+.-..+. +.. ... +.....++..|++ .+.....++++.++
T Consensus 246 ~~f~~l~~~~R~~~l~~~~~~ny-------------------------~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~ 300 (341)
T PF13434_consen 246 DYFYSLPDEERRELLREQRHTNY-------------------------GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNT 300 (341)
T ss_dssp HHHHTS-HHHHHHHHHHTGGGTS-------------------------SEB-HHHHHHHHHHHHHHHHHT---SEEETTE
T ss_pred hhhhcCCHHHHHHHHHHhHhhcC-------------------------CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCC
Confidence 665554443333322 210 000 0011223333322 33333579999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCC
Q 006532 231 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 231 ~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
+|+++..+++| .+ -+.+.+..+++...+.+|.||+|||
T Consensus 301 ~v~~~~~~~~~---~~-~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 301 EVTSAEQDGDG---GV-RLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEEEEEEES-S---SE-EEEEEETTT--EEEEEESEEEE---
T ss_pred EEEEEEECCCC---EE-EEEEEECCCCCeEEEecCEEEEcCC
Confidence 99999887654 33 3566777788888999999999999
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=73.16 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=37.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcccc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 122 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~ 122 (641)
+|.+|||+|.+|+..|..|++.| +|+||||.+..||+..-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 79999999999999999999999 99999999998888754
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00011 Score=80.22 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=34.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
.+|+|||||+|||+||+.|.+.| +|+|+|+....||..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 37999999999999999999999 999999999888755
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0061 Score=65.20 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEE--c-CEEEEcCCCCCc--CCCCCC
Q 006532 208 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI--S-KVTLLASGGAGH--IYPSTT 282 (641)
Q Consensus 208 ~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~--A-k~VVlAtGg~~~--~~~~~~ 282 (641)
.+++..|.+-++++ ||++.+++.|++|..+.++..+++.++... .+|+...|. . |.|++..|+... .|..++
T Consensus 207 eSii~Pl~~~L~~~-GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G~~~ 283 (500)
T PF06100_consen 207 ESIILPLIRYLKSQ-GVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMTEGSTYGDND 283 (500)
T ss_pred HHHHHHHHHHHHHC-CCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCccccccccCCCC
Confidence 56888899999885 999999999999998754434466666665 345554443 3 677777776543 344444
Q ss_pred Cc
Q 006532 283 NP 284 (641)
Q Consensus 283 ~~ 284 (641)
.|
T Consensus 284 ~p 285 (500)
T PF06100_consen 284 TP 285 (500)
T ss_pred CC
Confidence 33
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=80.23 Aligned_cols=38 Identities=21% Similarity=0.456 Sum_probs=34.7
Q ss_pred ccEEEECccHHHHHHHHHHHhc----C-CeEEEEecCCCCCcc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~----G-~V~llek~~~~~g~s 120 (641)
.||+|||||+|||+||+.|+++ | +|+|+|+....||..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 5899999999999999999998 9 999999998777644
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=72.07 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=30.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-+|+|||||.+|+.+|..+++.| +|+|+++.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 47999999999999999999999 999999875
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0017 Score=72.40 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=39.2
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.||+++.++.++++..+ ++ ++.++.+.+..+++...+.++.||+|+|-.+
T Consensus 401 ~gV~i~~~~~v~~i~~~-~~---~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGD-GD---KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CCCEEEECCeeEEEEcC-CC---EEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 49999999999998754 34 6778877665556666899999999998544
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0014 Score=73.05 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=40.0
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
.||+++.++.++++..+ ++ ++.++.+.+..+|+..++.++.|++|+|-.
T Consensus 400 ~gI~i~~~~~v~~i~~~-~g---~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 400 PNVTIITNAQTTEVTGD-GD---KVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred CCcEEEECcEEEEEEcC-CC---cEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 59999999999999754 34 688888877666777789999999998843
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=71.59 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 37999999999999999999999 9999998653
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00033 Score=76.24 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=34.2
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCC---CCCCccchhhhHHHHHHHHHHHHHHHH
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGL---HGANRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~---~Ga~rl~g~sl~~a~v~G~~Ag~~aa~ 484 (641)
.|+|.||++++|++|++||+|||+ +.. .|...... ....|.-.|+.|+++++.
T Consensus 248 ~G~i~vd~~~~t~~~~Vya~GD~~-~~~~~~~~~~~~~~-~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 248 TGAIWVNEKFQTSVPNIYAAGDVA-ESHNIITKKPAWVP-LAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCEEECCCcEeCCCCEEEeeeeE-EeeeccCCCceeee-chHHHHHHHHHHHHHhcC
Confidence 478999999999999999999997 221 11111001 112355567777776643
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0019 Score=70.99 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=29.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-+|+|||||.+|+-+|..+++.| +|+|+++.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 37999999999999999999999 999999865
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0021 Score=70.67 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+|+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47999999999999999999999 999999865
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0018 Score=70.81 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|+|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 47999999999999999999999 999998764
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0036 Score=66.45 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=33.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC----CeEEEEecCCCCCcccc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNY 122 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G----~V~llek~~~~~g~s~~ 122 (641)
++|+|||||++|++.|.+|.+.- .|.|+|+....|++..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 68999999999999999998753 59999998876654444
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.002 Score=70.84 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=29.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-+|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 47999999999999999999999 999999865
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0029 Score=69.68 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+++.| +|+|+++.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 37999999999999999999999 999999754
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00021 Score=78.31 Aligned_cols=37 Identities=22% Similarity=0.518 Sum_probs=33.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC---CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~llek~~~~~g~s 120 (641)
+|+|||||+|||+||+.|++.| +|+|+|+....||..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 6999999999999999999966 799999998877643
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0022 Score=70.56 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=30.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||..|+-+|..+++.| +|+|+++.+.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 47999999999999999999999 9999998653
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=65.99 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
.||+++.++.++++..+ + ++.++.+.+..+|+...+.++.||+|+|-.
T Consensus 190 ~gv~~~~~~~v~~i~~~--~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD--N---KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred CCeEEEeccEEEEEEcc--C---cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 39999999999998743 2 466676665556766789999999999944
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=70.42 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=29.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..|.+.| +|+|+.+..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 48999999999999999999999 999998754
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00025 Score=75.71 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=34.1
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
.|+|+|||+|||+||+.|+++| +|+|+|.+...||..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 5999999999999999999999 999999999887643
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0007 Score=67.17 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=32.2
Q ss_pred cccccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPH 116 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~ 116 (641)
...||.+|||||+.|++.|.++.-+ + +|+|+||....
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 4579999999999999999999765 6 99999997643
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00034 Score=73.48 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=38.2
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcccc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 122 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~ 122 (641)
...+||+|||+|.+||.||+.|.+.| +|+|+|..+..+|.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 45689999999999999999999999 99999998887776543
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0031 Score=67.36 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-+|+|||||..|+-+|..|++.| +|+|+++.+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0039 Score=68.32 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-.|..+++.| +|+++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0054 Score=67.71 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-+|..+++.| +|+|+++.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 37999999999999999999999 999999865
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0045 Score=67.55 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=29.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.|+|||||.+|+.+|..+++.| +|+|+++.+.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 6999999999999999999999 9999998753
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00054 Score=74.87 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=33.2
Q ss_pred cccEEEECccHHHHHHHHHHHh--cC-CeEEEEecCCCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAK--HG-TVAVITKAEPHES 118 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~--~G-~V~llek~~~~~g 118 (641)
..+|+||||||||+.||..|++ .| +|+|+|+.+.++|
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 4689999999999999999987 68 9999999987655
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00042 Score=76.30 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=32.8
Q ss_pred cEEEECccHHHHHHHHHHHhc------C-CeEEEEecCCCCCcc
Q 006532 84 DFSVIGSGVAGLCYALEVAKH------G-TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~------G-~V~llek~~~~~g~s 120 (641)
+|+|||||++||+||+.|++. | +|+|+|+....||..
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 699999999999999999985 5 899999998877754
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0051 Score=64.14 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=69.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||+|..|+-.|..+++.+ +|+++++...... ++
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~----------------------------------~~------- 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA----------------------------------EK------- 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC----------------------------------CH-------
Confidence 47999999999999999999999 9999998652100 00
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+...+.+.+++ .||+++.++.++++..+ ++
T Consensus 186 -----------------------------------------------~~~~~~~~~l~~-~gV~i~~~~~v~~v~~~-~~ 216 (321)
T PRK10262 186 -----------------------------------------------ILIKRLMDKVEN-GNIILHTNRTLEEVTGD-QM 216 (321)
T ss_pred -----------------------------------------------HHHHHHHhhccC-CCeEEEeCCEEEEEEcC-Cc
Confidence 011223344445 59999999999998754 33
Q ss_pred CCceEEEEEEEecC-CCeEEEEEcCEEEEcCCC
Q 006532 242 PDAVCHGVDTLNVE-TQEVVRFISKVTLLASGG 273 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~-~g~~~~i~Ak~VVlAtGg 273 (641)
.+.++.+.+.. +++...+.++.||+|+|-
T Consensus 217 ---~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 217 ---GVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred ---cEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 46677765432 234457999999999984
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00054 Score=75.56 Aligned_cols=40 Identities=13% Similarity=0.333 Sum_probs=35.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-C-eEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~~~~g~s 120 (641)
..+||+|||||++||+||+.|++.| + |+|+|+....||..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 4679999999999999999999999 5 99999998777644
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0047 Score=66.47 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||+|..|+-+|..|++.| +|+|+++...
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 36999999999999999999999 9999998653
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00056 Score=73.00 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=30.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
+||+|||||.+|+.||+.|++.| +|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 48999999999999999999999 9999998764
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0058 Score=67.22 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=29.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00086 Score=68.80 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=40.7
Q ss_pred cccCceEeCCCCCcccCCeeecccccC--CCCCCCCccchhhhHHHHHHHHHHHHHHHHh
Q 006532 428 YMCGGVRAGLQGETNVRGLYVAGEVAC--TGLHGANRLASNSLLEALVFARRAVQPSIDH 485 (641)
Q Consensus 428 ~~~GGI~vD~~~~T~ipGLyAaGe~a~--~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~ 485 (641)
...||++||...+. -.+||+|||++| -++.|+-|.-. .-.|+|+||+||+++...
T Consensus 463 ~~lGGfrvnaeL~a-r~NvwvAGdaacF~D~~LGrRRVeh--hdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 463 EKLGGFRVNAELKA-RENVWVAGDAACFEDGVLGRRRVEH--HDHAVVSGRLAGENMTGA 519 (659)
T ss_pred cccCcEEeeheeec-ccceeeecchhhhhcccccceeccc--cccceeeceecccccccc
Confidence 34577777776543 468999999986 46677777653 456899999999987654
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0073 Score=66.14 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=29.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 37999999999999999999999 999999875
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00093 Score=76.77 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=35.5
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...+|+|||||++||+||+.|++.| +|+|+|+....||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 4589999999999999999999999 99999998877664
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0075 Score=65.31 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=70.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
-.++|||||..|+--|-..++.| +|+|||+.+..-. ..|
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------------------~~D-------- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------------------GED-------- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------------------cCC--------
Confidence 46999999999999999999999 9999999764210 011
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
..+.+.+.+.+++ .|+++++++.++.+..+ ++
T Consensus 214 ----------------------------------------------~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~-~~ 245 (454)
T COG1249 214 ----------------------------------------------PEISKELTKQLEK-GGVKILLNTKVTAVEKK-DD 245 (454)
T ss_pred ----------------------------------------------HHHHHHHHHHHHh-CCeEEEccceEEEEEec-CC
Confidence 1234455566666 59999999999998765 33
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
. .-+... +|+...+.|+.|++|+|-.+
T Consensus 246 ---~-v~v~~~---~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 246 ---G-VLVTLE---DGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred ---e-EEEEEe---cCCCCEEEeeEEEEccCCcc
Confidence 2 223332 33333689999999999665
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00096 Score=76.22 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=35.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
...||+|||||+|||+||..|++.| +|+|+|+....||.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4579999999999999999999999 99999998766654
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00097 Score=74.24 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=33.3
Q ss_pred cccEEEECccHHHHHHHHHHHhc-----C-CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKH-----G-TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~-----G-~V~llek~~~~~g~ 119 (641)
..||+|||+|+|||+||..|++. | +|+|+|+....||.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 46999999999999999999965 4 79999998877764
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.011 Score=66.15 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 37999999999999999999999 999999865
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=64.74 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|.++++..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 47999999999999999999999 999998754
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0099 Score=65.04 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=29.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||+|..|+-.|..+++.| +|.|+++++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 36999999999999999999999 9999998653
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.01 Score=69.70 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.++|||||..|+-+|..+++.| +|.|++..+
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~ 178 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAP 178 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 6899999999999999999999 999999765
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0036 Score=67.40 Aligned_cols=54 Identities=22% Similarity=0.149 Sum_probs=36.0
Q ss_pred cCceEeCCCCCcc-cCCeeecccccCCCCCCC-Cccc-hhhhHHHHHHHHHHHHHHHH
Q 006532 430 CGGVRAGLQGETN-VRGLYVAGEVACTGLHGA-NRLA-SNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 430 ~GGI~vD~~~~T~-ipGLyAaGe~a~~g~~Ga-~rl~-g~sl~~a~v~G~~Ag~~aa~ 484 (641)
.|.|.||++++|+ .+++||+||++. -.+.. .+.+ .-....+...+++++..+..
T Consensus 253 ~g~i~v~~~~~~~~~~~v~a~GD~~~-~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 253 GGAVLVDERGGTSKDPDVYAAGDVAE-IPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred CCCEEEccccccCCCCCEEeccceEe-eecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 4559999999998 999999999872 22221 1111 22234566778888877664
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.012 Score=65.27 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|.|+++.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 37999999999999999999999 999999865
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=64.16 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=28.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-.|..+++.| +|+|+++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 37999999999999999999999 999998643
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.013 Score=64.75 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=28.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|+|||||..|+-.|..+++.| +|+|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6999999999999999999999 99999864
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.011 Score=63.75 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=32.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 117 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~ 117 (641)
..+|+|||+|..|+.+|..|+++| +|+++|+....+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 369999999999999999999999 999999987643
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=66.23 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=29.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||..|+-.|..+++.| +|+|||+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 37999999999999999999999 9999998653
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0095 Score=69.75 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..|++.| +|.|+++.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 36999999999999999999999 999999754
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.015 Score=63.30 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||.+|+-+|..+++.| +|+++++..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 37999999999999999999999 999999765
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.016 Score=64.06 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
-.|+|||+|..|+-.|..+++.| +|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 37999999999999999999999 99999864
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.016 Score=63.88 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=30.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
-.|+|||||..|+-.|..+++.| +|+||++.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 37999999999999999999999 9999998753
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.022 Score=62.64 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=29.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-.|..+++.| +|.|+++.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47999999999999999999999 999999865
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=64.18 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 212 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 212 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
..+.+.+++ .||+++.++.++++..++++ ...+.. .+|+ .+.++.||+|+|-.
T Consensus 235 ~~l~~~L~~-~GI~i~~~~~v~~i~~~~~~----~~~v~~---~~g~--~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 235 KELTKQLRA-NGINIMTNENPAKVTLNADG----SKHVTF---ESGK--TLDVDVVMMAIGRV 287 (486)
T ss_pred HHHHHHHHH-cCCEEEcCCEEEEEEEcCCc----eEEEEE---cCCC--EEEcCEEEEeeCCC
Confidence 445555666 49999999999999765333 222332 2343 58999999999944
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=68.05 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=28.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-C-eEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| + |+|+++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999999 6 99998754
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=63.89 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+-.|..+++.| +|+|+++.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 37999999999999999999999 999999765
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.012 Score=64.87 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=39.6
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEec---------CCCeEEEEEcCEEEEcCCCCC
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---------ETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---------~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+.+ .||+++.++.++++..+ ++ ++.++.+... ..|+...+.++.||+|+|-..
T Consensus 338 ~~~~-~GV~i~~~~~~~~i~~~-~g---~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 338 NAHE-EGVEREFNVQTKEFEGE-NG---KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred HHHH-cCCeEEeccCceEEEcc-CC---EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCC
Confidence 3444 49999999999999753 55 7888765421 134556899999999999554
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=63.40 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=28.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|+|+++..
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47999999999999999999998 599998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.018 Score=63.31 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..|.+.| +|+|+++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999998 699998753
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.022 Score=62.30 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=29.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|+|||+|..|+-.|..+++.| +|+|++++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 7999999999999999999999 999999864
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.02 Score=62.78 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=29.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 47999999999999999999999 999999865
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0025 Score=66.18 Aligned_cols=40 Identities=23% Similarity=0.447 Sum_probs=34.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-C--eEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-T--VAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~--V~llek~~~~~g~s 120 (641)
...+|+|||||++||+||+.|++++ + |+|+|+.+..||.-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 4579999999999999999999998 5 56799998777643
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=64.90 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 47999999999999999999999 999999865
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0026 Score=67.05 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=33.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 118 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g 118 (641)
...|+|||||+|||+||.+|-+.| +|+|+|.....||
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 458999999999999999999888 8999999887666
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.024 Score=64.06 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=29.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 37999999999999999999999 999999743
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0026 Score=64.17 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=36.5
Q ss_pred cccEEEECccHHHHHHHHHHHhcCCeEEEEecCCCCCcccc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNY 122 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G~V~llek~~~~~g~s~~ 122 (641)
.-+|.|||+|++||+||+.|+++-+|+|+|.+...||.+..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccce
Confidence 35899999999999999999988899999999988886643
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.02 Score=57.92 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEE
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVT 267 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~V 267 (641)
.|.+++++.++++|+.+..-+++.-+ | .+|.|....++.+|+.+.+.=..|
T Consensus 394 VLq~kl~sl~Nv~ii~na~Ttei~Gd--g--~kV~Gl~Y~dr~sge~~~l~LeGv 444 (520)
T COG3634 394 VLQDKLRSLPNVTIITNAQTTEVKGD--G--DKVTGLEYRDRVSGEEHHLELEGV 444 (520)
T ss_pred HHHHHHhcCCCcEEEecceeeEEecC--C--ceecceEEEeccCCceeEEEeeee
Confidence 45566777789999999999998854 2 279999999988887665543333
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.028 Score=59.42 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-C-eEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~ 114 (641)
-.|+|||+|..|+-+|..+.+.| + |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36999999999999999999889 6 99998754
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.028 Score=66.72 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|+++.+..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 47999999999999999999999 999988753
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.035 Score=62.23 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=29.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-+|+|||||..|+-.|..+++.| +|.|+++.+
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 37999999999999999999999 999999765
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.032 Score=61.92 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=28.0
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
.|+|||||..|+-.|..+++.| +|+|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999 99999863
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.027 Score=61.40 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 37999999999999999999999 999999865
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0041 Score=67.25 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=33.0
Q ss_pred cccEEEECccHHHHHHHHHH-HhcC-CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEV-AKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~a-a~~G-~V~llek~~~~~g~s 120 (641)
..-|+||||||||+.||..+ ++.| +|.|+||.+.++|..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLv 79 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLI 79 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEE
Confidence 45799999999999999976 4678 999999999876543
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.04 Score=60.40 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 47999999999999999999999 999999865
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.033 Score=66.73 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=38.6
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEec--------------CCCeEEEEEcCEEEEcCCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.||++++++.++++..+++| ++.|+.+... .+|+...+.+|.||+|.|-..
T Consensus 622 eGI~~~~~~~p~~i~~~~~G---~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p 686 (1006)
T PRK12775 622 EGIDFFFLHSPVEIYVDAEG---SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKA 686 (1006)
T ss_pred CCCEEEecCCcEEEEeCCCC---eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCC
Confidence 49999999999998765566 7888876421 134556799999999999554
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0051 Score=73.55 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.2
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
...+||+|||+|++|+.||+.|++.| +|+|+|+....||..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence 34589999999999999999999999 999999987766643
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0054 Score=66.45 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=33.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~ 119 (641)
-.|.|||||||||+||..|++.| .|+++|+....+|-
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl 161 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL 161 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee
Confidence 68999999999999999999999 99999998876553
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0051 Score=70.95 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=35.9
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
...||+|||+|++||.||..|.+.| +|+|+|+....+|..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 3589999999999999999999999 999999988777644
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.036 Score=56.90 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=76.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
-..+|||+|..||--+---.+.| +|++||-....++. .|.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~--------------------------------mD~------- 252 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV--------------------------------MDG------- 252 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc--------------------------------cCH-------
Confidence 46899999999998887778899 99999976543221 111
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
++.+.+.+-+.+ .|+++..++.|+....+.||
T Consensus 253 -----------------------------------------------Eisk~~qr~L~k-QgikF~l~tkv~~a~~~~dg 284 (506)
T KOG1335|consen 253 -----------------------------------------------EISKAFQRVLQK-QGIKFKLGTKVTSATRNGDG 284 (506)
T ss_pred -----------------------------------------------HHHHHHHHHHHh-cCceeEeccEEEEeeccCCC
Confidence 122333344444 59999999999999887775
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+-+.+.+..+++..++.+|.+.+|+|-.+
T Consensus 285 ----~v~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 285 ----PVEIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred ----ceEEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 335777888999999999999999999655
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.041 Score=58.33 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 210 IERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 210 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
+.....+.+++ .||+|+.++.|+++.. ++ +.+. +|+. .|.++.||.|+|-.+
T Consensus 211 l~~~a~~~L~~-~GV~v~l~~~Vt~v~~--~~-------v~~~---~g~~-~I~~~tvvWaaGv~a 262 (405)
T COG1252 211 LSKYAERALEK-LGVEVLLGTPVTEVTP--DG-------VTLK---DGEE-EIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHH-CCCEEEcCCceEEECC--Cc-------EEEc---cCCe-eEecCEEEEcCCCcC
Confidence 33444455655 5999999999999863 32 4442 3443 699999999999554
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.063 Score=58.31 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=33.4
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+.+.+++ .||+++.++.|.++.. + . +.. .+|+ .+.++.||+|+|-.+
T Consensus 233 ~~~~~L~~-~gV~v~~~~~v~~v~~--~----~---v~~---~~g~--~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 233 YGQRRLRR-LGVDIRTKTAVKEVLD--K----E---VVL---KDGE--VIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHH-CCCEEEeCCeEEEEeC--C----E---EEE---CCCC--EEEccEEEEccCCCC
Confidence 34455555 5999999999998852 2 2 333 3455 689999999998443
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.15 Score=53.31 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=28.3
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
..-.|||+|+|.+|.+..-.+-..- +|+||+-..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 4568999999999999888887766 899998654
|
|
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.067 Score=55.60 Aligned_cols=36 Identities=19% Similarity=0.470 Sum_probs=29.1
Q ss_pred cccccEEEECccHHHHHHHHHHHhc----C-CeEEEEecCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEP 115 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~----G-~V~llek~~~ 115 (641)
...|||||||||+.|++-|..+... - ||+|+|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3479999999999998888877653 2 7999998743
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.12 Score=53.09 Aligned_cols=93 Identities=24% Similarity=0.310 Sum_probs=69.8
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHHH
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~~ 161 (641)
-||+|||||-+.+-.|+.|++.+ +|.|+=|......
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------- 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------- 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------------------------------------------
Confidence 39999999999999999999999 8999987653211
Q ss_pred HHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
...+.+.+++..+|.++.++.+.++.-+ +
T Consensus 181 -------------------------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~ 209 (305)
T COG0492 181 -------------------------------------------------EEILVERLKKNVKIEVLTNTVVKEILGD--D 209 (305)
T ss_pred -------------------------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecC--c
Confidence 0123344554458999999999999743 1
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCEEEEcCCCC
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
+.++.+.+.. |+...+..+.|+++.|..
T Consensus 210 ----v~~v~l~~~~-~~~~~~~~~gvf~~iG~~ 237 (305)
T COG0492 210 ----VEGVVLKNVK-GEEKELPVDGVFIAIGHL 237 (305)
T ss_pred ----cceEEEEecC-CceEEEEeceEEEecCCC
Confidence 5678887755 666778888888888743
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.095 Score=55.65 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=73.4
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCceeeccCCCCCHHHHHHHHHHhccCCCCHHHHHHH
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s~~a~ggi~~~~~~~d~~~~~~~d~~~~g~~~~~~~~~~~~ 160 (641)
.--|+|||+|..|+-+|-.+...+ +|++|++.+.+-- . .
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------------------------------------~---l- 252 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------------------------------------R---L- 252 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------------------------------------h---h-
Confidence 346999999999999999999889 9999998763210 0 0
Q ss_pred HHHhHHHHHHHHHcCCccccCCCCCcccccCCCccccceeeccCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
-+..+-+.+...+++ .||+++.++.+.++..+.+
T Consensus 253 ---------------------------------------------f~~~i~~~~~~y~e~-kgVk~~~~t~~s~l~~~~~ 286 (478)
T KOG1336|consen 253 ---------------------------------------------FGPSIGQFYEDYYEN-KGVKFYLGTVVSSLEGNSD 286 (478)
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHh-cCeEEEEecceeecccCCC
Confidence 011222333444555 5999999999999988766
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
| +++-|.+. +|+ ++.|+.||+.+|..+
T Consensus 287 G---ev~~V~l~---dg~--~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 287 G---EVSEVKLK---DGK--TLEADLVVVGIGIKP 313 (478)
T ss_pred C---cEEEEEec---cCC--EeccCeEEEeecccc
Confidence 7 67666654 454 699999999999776
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.18 Score=57.91 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|+|+.+..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999998 599998754
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.17 Score=61.02 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=37.7
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+++ .||+++.++.++++.. ++ ++.+|.+... +|+...+.++.|+++.|-.+.
T Consensus 360 ~L~~-~GV~i~~~~~v~~i~g--~~---~v~~V~l~~~-~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 360 EARE-LGIEVLTGHVVAATEG--GK---RVSGVAVARN-GGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred HHHH-cCCEEEcCCeEEEEec--CC---cEEEEEEEec-CCceEEEECCEEEEcCCcCch
Confidence 3444 4999999999998864 33 5667766532 344557999999999995553
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.28 Score=51.18 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHc--CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCC
Q 006532 209 EIERALLEAVVS--DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 209 ~~~~~l~~~~~~--~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
++-..|+++-.. ++.+.++..++|..+...++| + .-+...+..+|+..++..|+||+|||
T Consensus 276 ~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g---~-~~l~~~~~~~~~~~t~~~D~vIlATG 337 (436)
T COG3486 276 EIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDG---R-YRLTLRHHETGELETVETDAVILATG 337 (436)
T ss_pred HHHHHHHHHHhcCCCCCeeeccccceeeeecCCCc---e-EEEEEeeccCCCceEEEeeEEEEecc
Confidence 455566655322 357999999999999877666 5 45666676788999999999999999
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.26 Score=55.73 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=27.4
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
.-.|+|||+|..|+-+|..+.+.| +|+|+.+..
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 347999999999999999888888 588887754
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.025 Score=65.07 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=35.4
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
....|.|||+|||||+||-.|.+.| -|+|.||....+|-.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll 1824 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLL 1824 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCcee
Confidence 4578999999999999999999999 999999998776533
|
|
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.035 Score=59.66 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.6
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
+.+|||||+|.|..-+..|..|++.| +|+.+|++...||..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 35799999999999999999999999 999999999877644
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.35 Score=55.12 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEec--------------CCCeEEEEEcCEEEEcCCCCC
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.||+++.++.++++..+ ++ ++.++.+... .+|+...+.+|.||+|+|-..
T Consensus 475 ~GV~i~~~~~~~~i~~~-~g---~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 475 EGVVIYPGWGPMEVVIE-ND---KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred cCCEEEeCCCCEEEEcc-CC---EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 38888888877777543 44 6777655321 123456799999999999554
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.46 Score=50.37 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=32.4
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
+.+.+++ .||+++.++.+.++. ++ ++.+ .+|+ .+.++.||+|+|..+
T Consensus 197 ~~~~l~~-~gV~v~~~~~v~~i~---~~------~v~~---~~g~--~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 197 VLRLLAR-RGIEVHEGAPVTRGP---DG------ALIL---ADGR--TLPADAILWATGARA 243 (364)
T ss_pred HHHHHHH-CCCEEEeCCeeEEEc---CC------eEEe---CCCC--EEecCEEEEccCCCh
Confidence 4445555 599999999988873 22 2333 2454 689999999999654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.063 Score=55.20 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.6
Q ss_pred ccEEEECccHHHHHHHHHHHhc--C-CeEEEEecCCCCCcc
Q 006532 83 FDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~--G-~V~llek~~~~~g~s 120 (641)
.-|.|||+||||+.+|..|-++ + +|.|+||.+.+.|-.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv 61 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV 61 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee
Confidence 3799999999999999998774 4 899999999876643
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.59 Score=55.64 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=28.3
Q ss_pred cccEEEECccHHHHHHHHHHHhc-C--CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llek~~ 114 (641)
.-.|+|||||..|+-+|..+.+. | +|.|+.+..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 34799999999999999998876 7 699998764
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.51 Score=52.16 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+.| +|.+++..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 47999999999999998888887 699998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.2 Score=46.72 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=31.9
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 115 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~ 115 (641)
...+|++.||-||+-|+-|+.+.+.+ +++.+||.+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 34689999999999999999999887 7999999874
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.061 Score=59.01 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=36.9
Q ss_pred cCceEeCCCCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 430 ~GGI~vD~~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.|-|.+|.+++|++|||||+|||. .|-.| + ++.++..++.+++++.+++..
T Consensus 373 ~G~V~~d~~~~T~ipGvyAaGDi~-~Gp~g---v----I~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 373 HGRVLSSASGADTEPGLYVVGWLK-RGPTG---I----IGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CceEEeCCCCccCCCCEEEeeeEe-cCCCC---e----eeecHhhHHHHHHHHHHHHHc
Confidence 366788888899999999999998 34332 3 334455567788888887643
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.54 Score=44.95 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=43.2
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCC
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
.+.+++++.++|++++++.+.+.+-+ + +.+-|+.+.+..+|+...+..+.++.|.|
T Consensus 197 ~Mq~ra~~npnI~v~~nt~~~ea~gd--~--~~l~~l~ikn~~tge~~dl~v~GlFf~IG 252 (322)
T KOG0404|consen 197 IMQQRAEKNPNIEVLYNTVAVEALGD--G--KLLNGLRIKNVKTGEETDLPVSGLFFAIG 252 (322)
T ss_pred HHHHHHhcCCCeEEEechhhhhhccC--c--ccccceEEEecccCcccccccceeEEEec
Confidence 45566667789999999988888754 2 26778888888899888888777777666
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.87 Score=54.08 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=27.9
Q ss_pred ccEEEECccHHHHHHHHHHHhc-C--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~-G--~V~llek~~ 114 (641)
-.|+|||||..|+-+|..+.+. | +|.|+.+..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999998877 5 799998764
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.11 Score=52.52 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=30.6
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~ 116 (641)
.-|-|||||.||.-||+.++++| +|.|.|-.+..
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 45889999999999999999999 99999977653
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.11 Score=50.90 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=37.9
Q ss_pred HHcCCCCCCCCeeEeeeeccccCceEeCCCCCcccCCeeecccccCCCCCC
Q 006532 409 LKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHG 459 (641)
Q Consensus 409 ~~~G~d~~~~~i~v~p~~~~~~GGI~vD~~~~T~ipGLyAaGe~a~~g~~G 459 (641)
.+.|+.|+.+-.-..+-.....|||.||+.++|+.|.+|||||+..+..|+
T Consensus 276 Satgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~~~~ 326 (334)
T KOG2755|consen 276 SATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTTWEP 326 (334)
T ss_pred eccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccCCCC
Confidence 445777776633444556667899999999999999999999985334443
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.15 Score=51.30 Aligned_cols=35 Identities=31% Similarity=0.557 Sum_probs=29.7
Q ss_pred cccccEEEECccHHHHHHHHHHHhc-C--CeEEEEecC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 114 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~-G--~V~llek~~ 114 (641)
..++.|||||||.+|+..|....++ | +|.|||-..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 3579999999999999999988764 4 899999654
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.32 Score=53.43 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=29.5
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.|+|||.|++|++||..|+++| +|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 4899999999999999999999 9999998764
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.39 Score=53.11 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=28.7
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|+|||+|.+|+.+|..|+++| +|+++|+..
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6999999999999999999999 999999754
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.4 Score=49.57 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCCc
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
|.+.+.+ .|++++.+....++.. ++ ++.++... +|. .+.|+-||+|+|-..+
T Consensus 193 L~~~le~-~Gi~~~l~~~t~ei~g--~~---~~~~vr~~---DG~--~i~ad~VV~a~GIrPn 244 (793)
T COG1251 193 LRRKLED-LGIKVLLEKNTEEIVG--ED---KVEGVRFA---DGT--EIPADLVVMAVGIRPN 244 (793)
T ss_pred HHHHHHh-hcceeecccchhhhhc--Cc---ceeeEeec---CCC--cccceeEEEecccccc
Confidence 4444555 5999999887777765 33 67777764 454 5899999999996554
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.37 Score=46.17 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=27.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~ 115 (641)
.-.|+|||+|.++.-+|..|++.| +|.++-|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 468999999999999999999999 9999988753
|
... |
| >KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.36 Score=50.16 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=34.8
Q ss_pred cccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g 118 (641)
..++||||||.|..=...|..+++.| +|+=+|...+.||
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 35799999999999988888899999 9999999988765
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.06 E-value=0.26 Score=48.25 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=26.6
Q ss_pred EEEECccHHHHHHHHHHHhcC---CeEEEEecCC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 115 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G---~V~llek~~~ 115 (641)
.+|||||+||.+||-.+++.- +|+|+....+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 589999999999999999865 7888886554
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=88.75 E-value=0.45 Score=43.82 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=27.8
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
|.|||+|..|.+.|..++++| +|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 789999999999999999999 999998754
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.36 Score=40.94 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=28.9
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|||||||..|..-+..|.+.| +|+|+.+..
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 47999999999999999999999 999998763
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.63 Score=49.27 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=34.6
Q ss_pred eCCCCCcc-cCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhhc
Q 006532 435 AGLQGETN-VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 435 vD~~~~T~-ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 488 (641)
.+...+|. +||||+||+.+ |+.| ..||...|.+||.+|+.++++
T Consensus 346 l~~~l~~k~~~~lf~AGqi~--G~~G--------y~eaaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 346 LLNTLETKKIPGLFFAGQIN--GTEG--------YEEAAAQGLIAGINAARRLQG 390 (392)
T ss_dssp BBTTSBBSSSBTEEE-GGGG--TB-S--------HHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceEECCCCCceECCCCc--chhH--------HHHHHHHHHHHHHHHHHHHcC
Confidence 34477775 99999999996 6644 789999999999999988754
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.74 Score=47.44 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=35.1
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
..|||+|+|.|+-=+.-+..|+..| +|+.+||++..|+.+
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence 3799999999999998888889999 999999999876533
|
|
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=88.15 E-value=0.41 Score=51.43 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 92 VAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 92 ~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
+|||+||+.|+++| +|+|+|+....||..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence 59999999999999 999999999887754
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.69 Score=41.39 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.2
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-C-eEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~ 114 (641)
...|+|||+|.+|-.++..|++.| + |.|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999 5 99998753
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.72 E-value=3 Score=44.07 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=33.7
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCEEEEcCCCCC
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.+.+ .+|++..++.|.++..+ . +.+ +..+|+...|..--+|-|||-.+
T Consensus 282 ~f~~-~~I~~~~~t~Vk~V~~~------~---I~~-~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 282 QFVR-DGIDLDTGTMVKKVTEK------T---IHA-KTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred Hhhh-ccceeecccEEEeecCc------E---EEE-EcCCCceeeecceEEEecCCCCC
Confidence 3444 59999999998887422 2 233 22478888888889999998555
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=87.47 E-value=0.67 Score=44.79 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=28.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
-.|||||||..|...+..|.+.| +|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 37999999999999999999999 99999864
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.73 Score=41.91 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=28.1
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
|+|||+|..|+..|..|++.| +|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 689999999999999999999 999999876
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.75 Score=46.24 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=34.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
....|+|||.|..|..+|..|++.| +++|+|......++
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sN 69 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTN 69 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccc
Confidence 3568999999999999999999999 89999988765444
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.28 E-value=0.84 Score=43.12 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=26.0
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
|.|||+|.-|..-|..++..| +|+|+|...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 789999999999999999999 999999754
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=86.20 E-value=0.95 Score=42.19 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=29.5
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...|+|+|+|.+|..||..|...| +|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 368999999999999999999999 999999754
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=85.90 E-value=1.1 Score=44.43 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=34.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCccc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTN 121 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s~ 121 (641)
...|+|||.|..|..+|..|++.| +++|+|.+....++..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcc
Confidence 468999999999999999999999 8999999887655443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.78 E-value=0.91 Score=44.55 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=29.4
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.++|||+|..|...|..|.+.| .|+++|+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 5899999999999999999999 999999876
|
|
| >KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.51 E-value=0.4 Score=49.84 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=35.1
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~g~s 120 (641)
+|||+|+|.|.-=+.-+..|+..| +|+.+||++..||.+
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccc
Confidence 499999999999998888899999 999999999877654
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.43 E-value=1.8 Score=44.12 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=30.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 117 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~~~~ 117 (641)
-.-||||+|-.+|-||-.|+-.| .|+|+=|.-...
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr 234 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR 234 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc
Confidence 36799999999999999999999 999888776543
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=85.34 E-value=0.94 Score=45.37 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=38.2
Q ss_pred CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhh
Q 006532 438 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 438 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~ 486 (641)
+.+--+||||++|=.+ ..++|.+|+|- -++..+.+|++||+.+.+.+
T Consensus 207 ~t~~~~~g~~~~gm~~-~~~~~~~rmgp-~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 207 NTREVVPNLYVAGMAV-AAVHGLPRMGP-IFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred ccCcccCCEEEechhh-hhhcCCCCcCc-hHHHHHHhhHHHHHHHHHHh
Confidence 3344699999999988 69999999874 46678889999999887754
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.33 E-value=0.96 Score=48.03 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=29.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
..+|+|||+|.+|+.+|..|...| +|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 467999999999999999999999 999999753
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.07 E-value=0.87 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=30.0
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...|+|+|+|++|+.|+..|...| +|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999999999999999 999999764
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.84 E-value=0.38 Score=48.71 Aligned_cols=33 Identities=33% Similarity=0.739 Sum_probs=31.0
Q ss_pred cccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
++||+|||||.||++||+.|+++| +++||.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 689999999999999999999999 999998865
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.84 E-value=0.75 Score=46.32 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.0
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
...+|+|||||.+|.-||.-|...| +|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 3579999999999999999999999 999999874
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=1 Score=49.24 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=29.4
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|||+|..|+.+|..|++.| +|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46999999999999999999999 999998854
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=84.48 E-value=1.1 Score=43.01 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=32.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
...|+|||+|.-|...|..|++.| +++|+|.+.....+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sN 60 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSN 60 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccc
Confidence 468999999999999999999999 69999988654443
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=1.3 Score=46.31 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=34.0
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
...|+|||.|..|..+|..|++.| +++|+|.+...-++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL 64 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNL 64 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccccc
Confidence 467999999999999999999999 899999988755444
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.39 E-value=1.4 Score=42.43 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=28.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~ 113 (641)
-.|||||||-.|...|..|.+.| +|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47999999999999999999999 99999753
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=83.28 E-value=1.5 Score=41.15 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.8
Q ss_pred EEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 85 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
|+|||.|..|...|..|++.| +++|+|.+.....+
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sN 38 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSN 38 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcc
Confidence 899999999999999999999 79999988764433
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=83.28 E-value=1.3 Score=39.50 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=31.0
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 118 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g 118 (641)
.-|+|||+|.-|...|..|++.| +++|+|.+.....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~ 40 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPS 40 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GG
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeec
Confidence 46999999999999999999999 7999999876443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.22 E-value=1 Score=43.18 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=38.4
Q ss_pred CCCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 438 QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 438 ~~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
+.+--.||||++|=.+ .-+||++|+|- -++..+.+|+.|++.+.+.++
T Consensus 213 ~T~eV~pgL~vaGMa~-~av~G~pRMGP-iFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 213 NTGEVYPGLYVAGMAV-NAVHGLPRMGP-IFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred ccccccCCeEeehhhH-HhhcCCcccCc-hhhhhhhchHHHHHHHHHHhh
Confidence 4455799999999988 58999999864 356678889999998877653
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=1.3 Score=44.37 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=38.6
Q ss_pred CCcccCCeeecccccCCCCCCCCccchhhhHHHHHHHHHHHHHHHHhhh
Q 006532 439 GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 439 ~~T~ipGLyAaGe~a~~g~~Ga~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 487 (641)
.+--.||||++|=.+ .-+||.+|+|- -++..+.+|++||+.+.+.++
T Consensus 209 t~~~~~g~~~~gm~~-~~~~~~~rmg~-~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 209 TGEVYPGLYVAGMAA-NAVHGLPRMGP-IFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred CCeEcCCEEEeehhh-hhhcCCCccCc-hhHhHHHhHHHHHHHHHHHhh
Confidence 344699999999988 68999999864 466788899999999887654
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.07 E-value=1.5 Score=40.38 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=27.2
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEe
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITK 112 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek 112 (641)
-.|||||||..|+.-|..|.+.| +|+||+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47999999999999999999999 9999953
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.01 E-value=1.3 Score=45.16 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=28.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
..|+|||+|.+|.++|..|++.| +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 47999999999999999999999 689998753
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=1.5 Score=43.23 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=32.9
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
...|+|||.|..|..+|..|++.| ++.|+|.+...-++
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sN 66 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSN 66 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhh
Confidence 467999999999999999999999 89999988765433
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=82.83 E-value=1.5 Score=45.94 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=33.4
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
...|+|||+|.-|..+|..|++.| +++|+|.+....++
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sN 63 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSN 63 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHH
Confidence 468999999999999999999999 89999998765443
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=82.47 E-value=1.8 Score=43.88 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=34.8
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
....|+|||.|.-|..+|..|+..| ++.|+|.+...-++.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNL 67 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNF 67 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhcc
Confidence 3578999999999999999999999 899999988755443
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=82.25 E-value=1.7 Score=41.91 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=33.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
....|+|||.|..|..+|..|++.| +++|+|.+.....+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sN 60 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSN 60 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccc
Confidence 3568999999999999999999999 89999998765443
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.04 E-value=3.2 Score=41.68 Aligned_cols=47 Identities=30% Similarity=0.345 Sum_probs=31.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--------CeEEEEecCCCCCccccccCceee
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--------TVAVITKAEPHESNTNYAQGGVSA 129 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--------~V~llek~~~~~g~s~~a~ggi~~ 129 (641)
..+|+|||+|..||++|+.+.+.+ +|.+++-..... .+++...|++.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~-T~s~~~AGl~~ 57 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED-TTSDVAAGLFR 57 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc-cccccccceee
Confidence 358999999999999998777622 577776655443 33343445543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=1.9 Score=41.82 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=33.7
Q ss_pred ccccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~ 119 (641)
....|+|||.|..|...|..|++.| +++|+|.+.....+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sN 67 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSN 67 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecccc
Confidence 3578999999999999999999999 79999998764443
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=81.75 E-value=2 Score=38.64 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=31.6
Q ss_pred EEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 85 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
|+|||.|.-|...|..|++.| +++|+|.+.....+.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl 39 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL 39 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh
Confidence 899999999999999999999 799999887654443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=1.8 Score=43.13 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=33.8
Q ss_pred cccEEEECccHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~~~~g~s 120 (641)
...|+|||.|.-|..+|..|+..| +++|+|.+...-++.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL 72 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNL 72 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchh
Confidence 578999999999999999999999 899999887654443
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=81.01 E-value=1.3 Score=47.54 Aligned_cols=32 Identities=44% Similarity=0.782 Sum_probs=30.5
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
+||+|||+|++|+++|+.+++.| +|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999 999999875
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.86 E-value=1.9 Score=43.58 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=28.1
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
.|+|+|+|.|+.++++.|++.| +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 6999999999999999999999 599998754
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.59 E-value=2.2 Score=43.65 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=28.1
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-C-eEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~-V~llek~~ 114 (641)
.-|+|+|+|.+|.++|..+++.| + |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36899999999999999999999 6 99998753
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=1.9 Score=43.95 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.7
Q ss_pred ccEEEECccHHHHHHHHHHHhcC--CeEEEEec
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~llek~ 113 (641)
..|+|+|+|.|+-++++.|++.| ++.|++|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 46999999999999999999999 68888874
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=80.49 E-value=1.7 Score=45.91 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.2
Q ss_pred cEEEECccHHHHHHHHHHHhcC--CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~llek~~ 114 (641)
.|+|+|+|+-||.++..+...| +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 5999999999999988888888 677777654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=80.29 E-value=1.9 Score=46.16 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=29.3
Q ss_pred ccEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
-.|+|+|.|+.|+.+|..|...| +|+++|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 47999999999999999999999 999998765
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=80.22 E-value=1.5 Score=41.57 Aligned_cols=31 Identities=35% Similarity=0.485 Sum_probs=24.9
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
.|.|||.|-.||..|..+|+.| +|+.+|...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 4789999999999999999999 999999654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=80.05 E-value=2.1 Score=36.80 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=27.1
Q ss_pred EEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 85 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 85 VlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
|+|+|.|..|...|-.|.+.+ +|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 799999999999999999988 899999875
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.02 E-value=1.9 Score=44.60 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=28.8
Q ss_pred cEEEECccHHHHHHHHHHHhcC-CeEEEEecC
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~llek~~ 114 (641)
+|.|||+|.-|..-|..++++| +|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 5999999999999999999999 999999764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 641 | ||||
| 1chu_A | 540 | Structure Of L-Aspartate Oxidase: Implications For | 1e-111 | ||
| 1knp_A | 540 | E. Coli L-aspartate Oxidase: Mutant R386l In Comple | 1e-111 | ||
| 2e5v_A | 472 | Crystal Structure Of L-Aspartate Oxidase From Hyper | 8e-65 | ||
| 1zoy_A | 622 | Crystal Structure Of Mitochondrial Respiratory Comp | 2e-62 | ||
| 1nek_A | 588 | Complex Ii (Succinate Dehydrogenase) From E. Coli W | 6e-62 | ||
| 2b76_A | 602 | E. Coli Quinol Fumarate Reductase Frda E49q Mutatio | 7e-62 | ||
| 3p4r_A | 577 | Crystal Structure Of Menaquinol:fumarate Oxidoreduc | 2e-61 | ||
| 1kf6_A | 602 | E. Coli Quinol-Fumarate Reductase With Bound Inhibi | 2e-61 | ||
| 3cir_A | 602 | E. Coli Quinol Fumarate Reductase Frda T234a Mutati | 6e-61 | ||
| 1yq3_A | 621 | Avian Respiratory Complex Ii With Oxaloacetate And | 7e-61 | ||
| 1e7p_A | 656 | Quinol:fumarate Reductase From Wolinella Succinogen | 1e-58 | ||
| 2bs2_A | 660 | Quinol:fumarate Reductase From Wolinella Succinogen | 1e-58 | ||
| 1qlb_A | 656 | Respiratory Complex Ii-Like Fumarate Reductase From | 3e-58 | ||
| 3vr8_A | 645 | Mitochondrial Rhodoquinol-Fumarate Reductase From T | 7e-57 | ||
| 1qo8_A | 566 | The Structure Of The Open Conformation Of A Flavocy | 1e-20 | ||
| 1ksu_A | 571 | Crystal Structure Of His505tyr Mutant Flavocytochro | 4e-17 | ||
| 1p2h_A | 571 | H61m Mutant Of Flavocytochrome C3 Length = 571 | 2e-16 | ||
| 1p2e_A | 571 | H61a Mutant Of Flavocytochrome C3 Length = 571 | 2e-16 | ||
| 1qjd_A | 571 | Flavocytochrome C3 From Shewanella Frigidimarina Le | 2e-16 | ||
| 1jrz_A | 571 | Crystal Structure Of Arg402tyr Mutant Flavocytochro | 3e-16 | ||
| 1jry_A | 571 | Crystal Structure Of Arg402lys Mutant Flavocytochro | 6e-16 | ||
| 1kss_A | 571 | Crystal Structure Of His505ala Mutant Flavocytochro | 6e-16 | ||
| 2b7s_A | 571 | R381k Mutant Of Flavocytochrome C3 Length = 571 | 6e-16 | ||
| 1jrx_A | 571 | Crystal Structure Of Arg402ala Mutant Flavocytochro | 6e-16 | ||
| 2b7r_A | 571 | Structure Of E378d Mutant Flavocytochrome C3 Length | 6e-16 | ||
| 1q9i_A | 571 | The A251c:s430c Double Mutant Of Flavocytochrome C3 | 1e-15 | ||
| 1e39_A | 571 | Flavocytochrome C3 From Shewanella Frigidimarina Hi | 3e-15 | ||
| 1m64_A | 571 | Crystal Structure Of Q363f Mutant Flavocytochrome C | 4e-15 | ||
| 1d4c_A | 572 | Crystal Structure Of The Uncomplexed Form Of The Fl | 6e-15 | ||
| 1lj1_A | 571 | Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHR | 8e-15 | ||
| 1d4d_A | 572 | Crystal Structure Of The Succinate Complexed Form O | 1e-14 |
| >pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY Length = 540 | Back alignment and structure |
|
| >pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With Succinate Length = 540 | Back alignment and structure |
|
| >pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From Hyperthermophilic Archaeon Sulfolobus Tokodaii Length = 472 | Back alignment and structure |
|
| >pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii From Porcine Heart At 2.4 Angstroms Length = 622 | Back alignment and structure |
|
| >pdb|1NEK|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With Ubiquinone Bound Length = 588 | Back alignment and structure |
|
| >pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation Length = 602 | Back alignment and structure |
|
| >pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In Complex With Glutarate Length = 577 | Back alignment and structure |
|
| >pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor Hqno Length = 602 | Back alignment and structure |
|
| >pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation Length = 602 | Back alignment and structure |
|
| >pdb|1YQ3|A Chain A, Avian Respiratory Complex Ii With Oxaloacetate And Ubiquinone Length = 621 | Back alignment and structure |
|
| >pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes Length = 656 | Back alignment and structure |
|
| >pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes Length = 660 | Back alignment and structure |
|
| >pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From Wolinella Succinogenes Length = 656 | Back alignment and structure |
|
| >pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The Parasitic Nematode Ascaris Suum Length = 645 | Back alignment and structure |
|
| >pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A Flavocytochrome C3 Fumarate Reductase Length = 566 | Back alignment and structure |
|
| >pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3 From Shewanella Frigidimarina Length = 571 | Back alignment and structure |
|
| >pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3 Length = 571 | Back alignment and structure |
|
| >pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3 Length = 571 | Back alignment and structure |
|
| >pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Length = 571 | Back alignment and structure |
|
| >pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3 From Shewanella Frigidimarina Length = 571 | Back alignment and structure |
|
| >pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3 From Shewanella Frigidimarina Length = 571 | Back alignment and structure |
|
| >pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3 From Shewanella Frigidimarina Length = 571 | Back alignment and structure |
|
| >pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3 Length = 571 | Back alignment and structure |
|
| >pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3 From Shewanella Frigidimarina Length = 571 | Back alignment and structure |
|
| >pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3 Length = 571 | Back alignment and structure |
|
| >pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From Shewanella Frigidimarina Length = 571 | Back alignment and structure |
|
| >pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine 365 Mutated To Alanine Length = 571 | Back alignment and structure |
|
| >pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3 Length = 571 | Back alignment and structure |
|
| >pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The Flavocytochrome C Fumarate Reductase Of Shewanella Putrefaciens Strain Mr-1 Length = 572 | Back alignment and structure |
|
| >pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3 Length = 571 | Back alignment and structure |
|
| >pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The Flavocytochrome C Fumarate Reductase Of Shewanella Putrefaciens Strain Mr-1 Length = 572 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 641 | |||
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 0.0 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 0.0 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 1e-167 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 1e-163 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 1e-159 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 1e-156 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 4e-95 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 3e-83 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 8e-83 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 5e-80 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 6e-65 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 2e-37 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 |
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540 | Back alignment and structure |
|---|
Score = 773 bits (1998), Expect = 0.0
Identities = 228/553 (41%), Positives = 310/553 (56%), Gaps = 30/553 (5%)
Query: 79 SVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVE 138
D +IGSG AGL AL +A V V++K E +T YAQGG++AV +DS++
Sbjct: 5 PEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSID 64
Query: 139 SHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDR----GEDGNLHLAREGGH 194
SH++DT++AGA +CD V V + ++ LI G FD + + HL REGGH
Sbjct: 65 SHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGH 124
Query: 195 SHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAV---CHGVDT 251
SH RI+HAAD TGRE+E L+ ++ PNI V E A+DL+ + G
Sbjct: 125 SHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWV 184
Query: 252 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
N + V +K +LA+GGA +Y TTNP +++GDG+AMA RA ++N+EF QFH
Sbjct: 185 WNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFH 244
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVAR 371
PTAL +FL+TEA+RG+G L RFMP +DER ELAPRD+VAR
Sbjct: 245 PTALYHPQAR---------NFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVAR 295
Query: 372 SIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCG 431
+ID ++K+ + LDISHKP + I HFP I + L G+D+T +P+P+VPAAHY CG
Sbjct: 296 AIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYTCG 355
Query: 432 GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI 491
GV G T+V GLY GEV+ TGLHGANR+ASNSLLE LV+ A +
Sbjct: 356 GVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMPYAHD 415
Query: 492 DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 551
+ W V + HN EL+ MW YVGIVR+T L+ A RI
Sbjct: 416 ISTLPPWDESRVENPDERVVIQHN--------WHELRLFMWDYVGIVRTTKRLERALRRI 467
Query: 552 DELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHV 611
L+ E + Y + V E+RNL A+L+V A+ R ESRGLH+ +D+P +
Sbjct: 468 TMLQQEIDEY-----YAHFRVSNNLLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPEL 522
Query: 612 EENKRLPTIILPS 624
+ P+I+ P
Sbjct: 523 LTHSG-PSILSPG 534
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} Length = 472 | Back alignment and structure |
|---|
Score = 691 bits (1787), Expect = 0.0
Identities = 166/535 (31%), Positives = 248/535 (46%), Gaps = 70/535 (13%)
Query: 87 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 146
+IGSG+AGL + + + G + +T A+GGV+A + DS E H QDTI
Sbjct: 4 IIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIR 63
Query: 147 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 206
G LCD +TV V +E + I + G F+ L EGGH+ R++H D T
Sbjct: 64 VGDGLCDVKTVNYVTSEAKNVIETFESWGFEFEE------DLRLEGGHTKRRVLHRTDET 117
Query: 207 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 266
GREI LL+ + I + E + D G T +
Sbjct: 118 GREIFNFLLKL-AREEGIPIIEDRLVEIRVK-----DGKVTGFVTEK----RGLVEDVDK 167
Query: 267 TLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKK 326
+LA+GG ++Y ++ GDGMA+A +A ++++MEFVQFHPT + +G
Sbjct: 168 LVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDG------- 220
Query: 327 TRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVL 386
FL+TE +RG+G + N ERF+ YD+R ELAPRD+++R+I ++ K + V
Sbjct: 221 ---EVFLLTETLRGEGAQIINENGERFLFNYDKRGELAPRDILSRAIYIEMLKGH--KVF 275
Query: 387 LDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGL 446
+D+S E FP +A ++G + IP+ PAAH++ GG+R ++GE+N+ L
Sbjct: 276 IDLSKI--EDFERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNL 332
Query: 447 YVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPK 506
Y GEV+ +GLHGANRLASNSLLE LVF + + S D + +
Sbjct: 333 YAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVDSSWEGISTDDGIVHSVRISGNK- 391
Query: 507 SLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG 566
KE++ I W VGI+R+ L A I+
Sbjct: 392 --------------TLSLKEIRRINWENVGIIRNEEKLVKA---INTYS----------- 423
Query: 567 WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 621
+N + L +A R ESRG H+ D+P+ + N
Sbjct: 424 ----------SSTQNEAIISYLTALAAEIRKESRGNHFREDYPYKDPNWEKRIYF 468
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Length = 602 | Back alignment and structure |
|---|
Score = 491 bits (1265), Expect = e-167
Identities = 165/565 (29%), Positives = 257/565 (45%), Gaps = 61/565 (10%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHGT---VAVITKAEPHESNTNYAQGGVSAVLCPSDS 136
D +++G+G AGL A+ A+ +A+I+K P S+T A+GG +AV DS
Sbjct: 3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDS 62
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E H DT+ G +LC+ + V P + +L G + R DG++++ R GG
Sbjct: 63 FEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKI 122
Query: 197 HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVET 256
R AAD TG + L + + P I F+ HF +D+L D G+ +N+
Sbjct: 123 ERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD----DGHVRGLVAMNMME 178
Query: 257 QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316
+V+ + ++A+GGAG +Y TN + TGDGM MA + +MEFVQ+HPT L
Sbjct: 179 GTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLP 238
Query: 317 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD------------ERAELA 364
G+ L+TE RG+GGIL N R++ Y + EL
Sbjct: 239 GSGI------------LMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELG 286
Query: 365 PRDVVARSIDDQLKK------RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITS 417
PRD V+++ + +K V LD+ H +K+ P I Y G+D
Sbjct: 287 PRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVK 346
Query: 418 QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR 477
+PIPV P AHY GG+ ET ++GL+ GE + GLHGANRL SNSL E +VF R
Sbjct: 347 EPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRL 406
Query: 478 AVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR--------RTKEVRKELQS 529
A + + + + ++ V + ++R E+
Sbjct: 407 AGEQATERAATAGNG--------NEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGL 458
Query: 530 IMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHG--WEQTFVGLEACEMRNLFCCA 586
M GI R+ +Q ++ EL+ ++ + + + + E+ + A
Sbjct: 459 AMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLL--YTIELGHGLNVA 516
Query: 587 KLVVSSALARHESRGLHYMVD--FP 609
+ + SA+AR ESRG H +D
Sbjct: 517 ECMAHSAMARKESRGAHQRLDEGCT 541
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660 | Back alignment and structure |
|---|
Score = 482 bits (1243), Expect = e-163
Identities = 168/577 (29%), Positives = 261/577 (45%), Gaps = 73/577 (12%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-----CP 133
V+Y D VIG G+AGL A+ + G + V++ S++ AQGG+ A L
Sbjct: 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSD 62
Query: 134 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLARE-- 191
D+ + H DT+ + CD + R+ P IREL A G + R G+
Sbjct: 63 GDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQ 122
Query: 192 -------------------GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232
GG R + AD TG + A+ + +S+ + A
Sbjct: 123 KTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECLKL-GVSIQDRKEA 181
Query: 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 292
I L+ D C+G ++ T +++ +++K TL+A+GG G IY +TTN +V G G
Sbjct: 182 IALIHQ----DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT 237
Query: 293 AMAHRA-QAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGME 351
A+A A + NME VQFHPT L G+ L+TE RGDGGIL ++
Sbjct: 238 AIALETGIAQLGNMEAVQFHPTPLFPSGI------------LLTEGCRGDGGILRDVDGH 285
Query: 352 RFMPLYD-ERAELAPRDVVARSIDDQLKK------RNEKYVLLDISHKPTEKILSHFPNI 404
RFMP Y+ E+ ELA RDVV+R + + ++K +++ LDIS + I ++ ++
Sbjct: 286 RFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDV 345
Query: 405 AAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRL 463
C + G+D + PV+P HY GG+R +GE ++GL+ AGE AC +HG NRL
Sbjct: 346 QEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRL 405
Query: 464 ASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR----- 518
NS+ EA+V + +H +T +DL + +
Sbjct: 406 GGNSVSEAVVAGMIVGEYFAEHCANTQVDLETK-------TLEKFVKGQEAYMKSLVESK 458
Query: 519 ---RTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHG--WEQTFV 572
+++ ++ +M VGI R L+ A ++EL + + +
Sbjct: 459 GTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELE 518
Query: 573 GLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 609
EA + + A V AL R ESRG H D+P
Sbjct: 519 --EAYRVPMMLKVALCVAKGALDRTESRGAHNREDYP 553
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588 | Back alignment and structure |
|---|
Score = 468 bits (1206), Expect = e-159
Identities = 185/569 (32%), Positives = 266/569 (46%), Gaps = 66/569 (11%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDS 136
V+ FD VIG+G AG+ AL++++ G T A+++K P S+T AQGG++ L D+
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDN 64
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 196
E HM DT+ Y+ D + + +C GP+ I EL +G F R +DG ++ GG S
Sbjct: 65 WEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSK 124
Query: 197 -------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
R AAD TG + L + + + + ++F +A+DL+ DG G
Sbjct: 125 NFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDG---AVVGC 180
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309
L +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME Q
Sbjct: 181 TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQ 240
Query: 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERAELAPRDV 368
FHPT +A G L+TE RG+GG L N ERFM Y +LA RDV
Sbjct: 241 FHPTGIAGAG------------VLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDV 288
Query: 369 VARSIDDQLKK------RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIP 421
VARSI ++++ + L + H E + S P I + +D +PIP
Sbjct: 289 VARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIP 348
Query: 422 VVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGEVACTGLHGANRLASNSLLEA 471
V+P HYM GG+ + G+ V GL+ GE+AC +HGANRL NSLL+
Sbjct: 349 VIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDL 408
Query: 472 LVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR--------RTKEV 523
+VF R A + +S + + R +
Sbjct: 409 VVFGRAAGLHLQESIAEQG---------ALRDASESDVEASLDRLNRWNNNRNGEDPVAI 459
Query: 524 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHG--WEQTFVGLEACEMR 580
RK LQ M + R ++ ++ + + L + + V E E+
Sbjct: 460 RKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRV--ECLELD 517
Query: 581 NLFCCAKLVVSSALARHESRGLHYMVDFP 609
NL A SA R ESRG H DFP
Sbjct: 518 NLMETAYATAVSANFRTESRGAHSRFDFP 546
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621 | Back alignment and structure |
|---|
Score = 462 bits (1191), Expect = e-156
Identities = 180/565 (31%), Positives = 269/565 (47%), Gaps = 66/565 (11%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 139
FD V+G+G AGL A +++ G A +TK P S+T AQGG++A L D+
Sbjct: 19 FDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRW 78
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---- 195
H DT+ +L D + + + + P + EL G F R E+G ++ GG S
Sbjct: 79 HFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFG 138
Query: 196 ----HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDT 251
HR AD TG + L + + S F +FA+DLL + C GV
Sbjct: 139 KGGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIA 193
Query: 252 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311
L +E + RF +K T++A+GG G Y S T+ +TGDG AM RA ++EFVQFH
Sbjct: 194 LCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFH 253
Query: 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERAELAPRDVVA 370
PT + G LITE RG+GGIL N ERFM Y +LA RDVV+
Sbjct: 254 PTGIYGAG------------CLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVS 301
Query: 371 RSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVP 424
RS+ ++++ + +V L + H P +++ + P I+ + + G+D+T +PIPV+P
Sbjct: 302 RSMTIEIREGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLP 361
Query: 425 AAHYMCGGVRAGLQGET---------NVRGLYVAGEVACTGLHGANRLASNSLLEALVFA 475
HY GG+ +G+ V GLY GE A +HGANRL +NSLL+ +VF
Sbjct: 362 TVHYNMGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFG 421
Query: 476 RRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR--------RTKEVRKEL 527
R + +I + + + G + N+ + RT E R +
Sbjct: 422 RAC---------ALTIAETCKPGEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNM 472
Query: 528 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHG--WEQTFVGLEACEMRNLFC 584
Q M + + R+ + LQ ++ ++ + F+ G W V E E++NL
Sbjct: 473 QKTMQSHAAVFRTGSILQEGCEKLSQIYRDLAHLKTFDRGIVWNTDLV--ETLELQNLML 530
Query: 585 CAKLVVSSALARHESRGLHYMVDFP 609
CA + A AR ESRG H D+
Sbjct: 531 CALQTIYGAEARKESRGAHAREDYK 555
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Length = 643 | Back alignment and structure |
|---|
Score = 305 bits (782), Expect = 4e-95
Identities = 98/625 (15%), Positives = 181/625 (28%), Gaps = 139/625 (22%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-----VAVITKAEPHESNTNYAQG-GVSAVLC---- 132
D +IG G +G A E A V ++ KA S ++ +
Sbjct: 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGR 82
Query: 133 --PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLA- 189
+++E +++ + L ++ V + G + DG
Sbjct: 83 SERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREG 142
Query: 190 ----REGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAV 245
G S+ I+ A +++E F +LL +
Sbjct: 143 QWQIMIHGESYKPIIAEAAKMAVG-------------EENIYERVFIFELLKD-NNDPNA 188
Query: 246 CHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTN---------PLVATGDGMAMAH 296
G +V + F +K +LA+GGA ++ + + TG G M
Sbjct: 189 VAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGL 248
Query: 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL 356
+A A+++ E +F P D P + N E ++
Sbjct: 249 KAGAMLTQFEH-RFIPFRFKDGYGP------------VGAWFLFFKCKAKNAYGEEYIKT 295
Query: 357 YDER---------AELAPRDVVARSIDDQLKKRN--------------EKYVLLDISHKP 393
A+ P + + ++ N + H
Sbjct: 296 RAAELEKYKPYGAAQPIPTPLRNHQVMLEIMDGNQPIYMHTEEALAELAGGDKKKLKHIY 355
Query: 394 TEKILSHFPNIAAECLKY---GLDITSQPIPVVPAAHYMCGGV----------------- 433
E ++ L + +D QP PA Y+ G
Sbjct: 356 EEAFEDFLDMTVSQALLWACQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPE 415
Query: 434 ------RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487
T V+GL+ G+ A H + +S S E + A+ AV+ ++ K
Sbjct: 416 EYAKLFPLKYNRMTTVKGLFAIGDCAGANPH---KFSSGSFTEGRIAAKAAVRFILEQKP 472
Query: 488 STSI---------DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIV 538
+ I + + + ++ + LQ IM Y +
Sbjct: 473 NPEIDDAVVEELKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGI 532
Query: 539 RST-----TSLQTAEWRIDELEAEWETYLFEHGWEQTFVG-------LEACEMRNLFCCA 586
+ LQ A + L+ + E + + A E+ + A
Sbjct: 533 ATIYKTNEKMLQRALELLAFLKEDLEK-----------LAARDLHELMRAWELVHRVWTA 581
Query: 587 KLVVSSALARHESR--GLHYMVDFP 609
+ V L R E+R G +Y D+P
Sbjct: 582 EAHVRHMLFRKETRWPGYYYRTDYP 606
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 662 | Back alignment and structure |
|---|
Score = 274 bits (701), Expect = 3e-83
Identities = 88/614 (14%), Positives = 159/614 (25%), Gaps = 96/614 (15%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL------CPSD 135
D ++G G+ A E + A K + + G V+ L +
Sbjct: 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDN 82
Query: 136 SVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIG-ASFDRGEDGNL-------- 186
+ + +++ L ++ + + D + G + + E G+
Sbjct: 83 NADDYVRMVRTDLMGLVREDLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKA 142
Query: 187 --HLAREGGHSHHRIVHAADMTGREIERALLEAVV-SDPNISVFEHHFAIDLLTTLDGPD 243
R G + G + + EA + + E F + LL
Sbjct: 143 AGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAAKNALGQDRIIERIFIVKLLLD-KNTP 201
Query: 244 AVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP---------STTNPLVATGDGMAM 294
G N+ EV F + ++A GGA ++Y P+ G M
Sbjct: 202 NRIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYRPRSVGEGMGRAWYPVWNAGSTYTM 261
Query: 295 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 354
+ A ++ ME +F P D P+ +G+ N M +
Sbjct: 262 CAQVGAEMTMMEN-RFVPARFKDGYGPVGAWFLLFK--AKATNCKGEDYCATNRAMLKPY 318
Query: 355 PLYD-ERAELAPRDVVARSI---------------DDQLKKRNEKYVLLDISHKPTE--- 395
+ + P + + L+ H E
Sbjct: 319 EERGYAKGHVIPTCLRNHMMLREMREGRGPIYMDTKTALQTSFATMSPAQQKHLEAEAWE 378
Query: 396 KILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGG----------------------- 432
L A + ++P Y+ G
Sbjct: 379 DFLDMCVGQANLWAATNCAPEERGSEIMPTEPYLLGSHSGCCGIWASGPDEAWVPEDYKV 438
Query: 433 ---VRAGLQGETNVRGLYVAGEVACTGLHGA-------NRLASNSLLEALVFARRAVQPS 482
T V GL+ + H R+ ++ + + +P
Sbjct: 439 RAANGKVYNRMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYL-DHKDFKPE 497
Query: 483 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVR--- 539
L ++ + C V++ K L Y G V
Sbjct: 498 FVETAEELKTLIYRPYYNYEKGKGASTCPVVNPEYISPKNFMMRLIKCTDEYGGGVGTYY 557
Query: 540 --STTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARH 597
S L T W ++ LE + L E + +L + R
Sbjct: 558 NTSKALLDTGFWLMEMLEEDSLKL----AARDLHELLRCWENYHRLWTVRLHMQHIAFRE 613
Query: 598 ESR--GLHYMVDFP 609
ESR G +Y DF
Sbjct: 614 ESRYPGFYYRADFL 627
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 8e-83
Identities = 109/465 (23%), Positives = 171/465 (36%), Gaps = 100/465 (21%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-------S 134
D V+GSG AG A+ G V +I K N A GG++A +
Sbjct: 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 186
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
DS E +DT+ G + D V+V+ + D + + A+GA + GG
Sbjct: 187 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTD-------VGMMGGA 239
Query: 195 SHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S +R G + + L + V NI + + I++L G G+
Sbjct: 240 SVNRAHRPTGGAGVGAHVVQVLYDNAVKR-NIDLRMNTRGIEVLKDDKG---TVKGILVK 295
Query: 253 NVETQEVVRFISKVTLLASGGAGHIYP------------STTNPLVATGDGMAMAHRAQA 300
+ + +LA+GG +TN A GDG+ +A A
Sbjct: 296 GMYKGYY-WVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGG 354
Query: 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER 360
+ +M+++Q HPT G ++TEAVRG+G IL N +RF+
Sbjct: 355 ALKDMQYIQAHPTLSVKGG------------VMVTEAVRGNGAILVNREGKRFV------ 396
Query: 361 AELAPRDVVARSI------------DDQLKKRN---EKYV-------------LLDISHK 392
E+ RD + +I DD ++K +KY+ L +
Sbjct: 397 NEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGI 456
Query: 393 PTEKILSHFPNIAAECLK----------YGLDITSQP---IPVVPAAHYMCGGVRAGLQG 439
+ + + + I V P H+ GGV +
Sbjct: 457 DGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKA 516
Query: 440 E------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
E + GLY AGEV G+HGANRL N++ + + F R A
Sbjct: 517 EVMNAKKQVIPGLYGAGEVTG-GVHGANRLGGNAISDIITFGRLA 560
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572 | Back alignment and structure |
|---|
Score = 263 bits (674), Expect = 5e-80
Identities = 115/468 (24%), Positives = 176/468 (37%), Gaps = 101/468 (21%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-------S 134
D +IGSG AGL A+ G V ++ K NT A GG++A
Sbjct: 127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIE 186
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
D + + DT+ G + D E V+V+ D I L ++GA + R GG
Sbjct: 187 DKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTD-------VGRMGGA 239
Query: 195 SHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S +R G + + L + V + + + +L G GV
Sbjct: 240 SVNRSHRPTGGAGVGAHVAQVLWDNAVKR-GTDIRLNSRVVRILEDASG---KVTGVLVK 295
Query: 253 NVETQEVVRFISKVTLLASGGAGHIYP------------STTNPLVATGDGMAMAHRAQA 300
T V + ++A+GG TN ATGDG+ +A +A A
Sbjct: 296 GEYTGYYV-IKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGA 354
Query: 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER 360
+++++Q HPT G +ITEAVRG+G I+ N RFM
Sbjct: 355 ATRDLQYIQAHPTYSPAGG------------VMITEAVRGNGAIVVNREGNRFM------ 396
Query: 361 AELAPRDVVARSIDDQ---------------LKKRNEKYVLLDISHK-PTEKILSHFPNI 404
E+ RD + +I Q K E YV L+I + T + L+ ++
Sbjct: 397 NEITTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDV 456
Query: 405 AAECLK----------------------YGLDITSQP---IPVVPAAHYMCGGVRAGLQG 439
A L ++ P + + PA H+ GG+ +
Sbjct: 457 PAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKA 516
Query: 440 E-------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480
E + GLY AGEV G+HGANRL N++ + + + R A
Sbjct: 517 EVKSEKTAKPITGLYAAGEVTG-GVHGANRLGGNAISDIVTYGRIAGA 563
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566 | Back alignment and structure |
|---|
Score = 223 bits (569), Expect = 6e-65
Identities = 122/543 (22%), Positives = 195/543 (35%), Gaps = 123/543 (22%)
Query: 13 HFGGIRCKGQSCQQASLVSSLTFNGCIQRELSWFLRFQRFNFSHSPVSENW--KSLRTVP 70
H G I C SC + N C F+ P S+ KS
Sbjct: 59 HLGDINCT--SCHKGHEEPKFYCNEC-----------HSFDIKPMPFSDAKKKKSWDDGW 105
Query: 71 VLSCLRDGSVKYFDFS----VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125
++ + V+G+G AG +L K G V ++ KA N+ + G
Sbjct: 106 DQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAG 165
Query: 126 GVSAVLCP-------SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASF 178
G++AV D VE ++D + G D + V ++ + D ++ L ++GA+
Sbjct: 166 GMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANL 225
Query: 179 DRGEDGNLHLAREGGHSHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236
D L R GG R H +G EI L +A I + + L+
Sbjct: 226 DD-------LKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQ-GIDTRLNSRVVKLV 277
Query: 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG-----------AGHIYP-STTNP 284
D G T + +K +LA+GG + +++N
Sbjct: 278 VNDDH---SVVGAVVHGKHTGYYMI-GAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNN 333
Query: 285 LVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGI 344
+ ATGDG+ MA A ++++++VQ HPT D LI+E VRG G +
Sbjct: 334 ITATGDGVLMAKEIGASMTDIDWVQAHPTVGKDSR------------ILISETVRGVGAV 381
Query: 345 LYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFP-- 402
+ N RF+ +EL RD + +I Q +++ D K++ +
Sbjct: 382 MVNKDGNRFI------SELTTRDKASDAILKQ--PGQFAWIIFDNQLYKKAKMVRGYDHL 433
Query: 403 ----------------NIAAECLK----------------------YGLDITSQP---IP 421
+ L L++T P +
Sbjct: 434 EMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFGRADMPLNMTQSPYYAVK 493
Query: 422 VVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFA 475
V P H+ GGV + GL+ AGEV G+HG NRL N++ + +VF
Sbjct: 494 VAPGIHHTMGGVAINTTASVLDLQSKPIDGLFAAGEVTG-GVHGYNRLGGNAIADTVVFG 552
Query: 476 RRA 478
R A
Sbjct: 553 RIA 555
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-37
Identities = 75/496 (15%), Positives = 132/496 (26%), Gaps = 135/496 (27%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS------- 134
D V G G+AG+ ++E A+ G V V+ + T A G +
Sbjct: 42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATALAGGFIYLGGGTPLQKACGF 101
Query: 135 -DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-------- 185
DS E+ + A D+E + C + L+ G F G
Sbjct: 102 DDSPENMKTFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFD 161
Query: 186 LHLAREGGHSHHRIVHAADM------------------TGREIERALLEAVVSDPNISVF 227
L GG + A G + + L+E +
Sbjct: 162 DGLMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVETA-EKLGVRAE 220
Query: 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH----------- 276
L+T G V G+ + VR + +LA+G +
Sbjct: 221 YDMRVQTLVTDDTG--RVV-GIVAKQYGKEVAVR-ARRGVVLATGSFAYNDKMIEAHAPR 276
Query: 277 -IYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLIT 335
I G + MA A +++M+ +
Sbjct: 277 LIGRPGAAIEEHDGRSILMAQALGADLAHMDATEVAFVCDPQL----------------- 319
Query: 336 EAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE 395
GIL N +R++ E + + + N+ ++++D +
Sbjct: 320 ----IVRGILVNGRGQRYV------PEDTYSGRIGQMTLFH--QDNQAFLIIDEASYEEG 367
Query: 396 KILSHFPNIAA----------ECL--KYGLD----------------------------- 414
+ E L GL
Sbjct: 368 AAATTATPFLRVQPKWAAETVEELESDMGLPAGALQSTVEVYNKHAAEGSDPLLHKKSEW 427
Query: 415 --ITSQP---IPVVPAA-HYMCGGVRAGLQGE---TN---VRGLYVAGEVACTGLHGANR 462
P + + + GG+R + E + + GL+ AG G+
Sbjct: 428 VKPIGTPVAALDLRGFTLGFTLGGLRTTVNSEVLHVSGEPIPGLFAAGRCTS-GVCAGGY 486
Query: 463 LASNSLLEALVFARRA 478
+ SL + + RRA
Sbjct: 487 ASGTSLGDGSFYGRRA 502
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 6e-06
Identities = 74/531 (13%), Positives = 159/531 (29%), Gaps = 172/531 (32%)
Query: 194 HSHHRI---VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT------LDGPDA 244
H HH + ++I +A V + + + +L+ + DA
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKDA 60
Query: 245 VCHG---VDTLNVETQEVV-RFISKV-----TLLAS---------GGAGHIYPSTTNPLV 286
V TL + +E+V +F+ +V L S +Y + L
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 287 ATGDGMAMAH--RAQAV---------ISNMEFVQFHPTALADEGLPIKPKKTRENSFLIT 335
A + R Q + + V G+ K +++
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-------GVLGSGK-----TWVAL 168
Query: 336 EAVRG-------DGGILY-NLG--------ME-------RFMPLYDERAELAPR-DVVAR 371
+ D I + NL +E + P + R++ + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 372 SIDDQLKK--RNEKY-----VLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVP 424
SI +L++ +++ Y VLL++ + K + F N++ + L +T++ V
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNA---KAWNAF-NLSCKIL-----LTTRFKQV-- 277
Query: 425 AAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL-VFARRAVQPSI 483
++ + + + L E + + +
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPD--------------------EVKSLLLK-----YL 311
Query: 484 DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTS 543
D + DL T P ++ I ++ + W++V + TT
Sbjct: 312 DCRPQ---DLPRE---VLTTNP--RRLSI---IAESIRDGLATWDN--WKHVNCDKLTTI 358
Query: 544 LQTAEWRIDELE-AEWETY-----LFEHG-----------WEQTFVGLEACEMRNLFCCA 586
++++ ++ LE AE+ +F W +++ M +
Sbjct: 359 IESS---LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD---VIKSDVMVVV---N 409
Query: 587 KLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILPSLVNCTWSSRQLHK 637
KL S + + +P+I L V + LH+
Sbjct: 410 KLHKYSLVEKQPKESTIS------------IPSIYLELKVKLE-NEYALHR 447
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 641 | ||||
| d1chua2 | 305 | c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E | 6e-61 | |
| d1chua2 | 305 | c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E | 1e-13 | |
| d1neka2 | 330 | c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase | 5e-58 | |
| d1neka2 | 330 | c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase | 5e-12 | |
| d1kf6a2 | 311 | c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es | 8e-55 | |
| d1kf6a2 | 311 | c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es | 1e-05 | |
| d1jnra2 | 356 | c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct | 9e-49 | |
| d2bs2a2 | 336 | c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo | 9e-46 | |
| d2bs2a2 | 336 | c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo | 1e-07 | |
| d1chua3 | 116 | d.168.1.1 (A:238-353) L-aspartate oxidase {Escheri | 3e-37 | |
| d1neka3 | 120 | d.168.1.1 (A:236-355) Succinate dehydogenase {Esch | 8e-37 | |
| d1kf6a3 | 132 | d.168.1.1 (A:226-357) Fumarate reductase {Escheric | 1e-31 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 2e-29 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 1e-09 | |
| d2bs2a3 | 121 | d.168.1.1 (A:251-371) Fumarate reductase {Wolinell | 1e-28 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 2e-23 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 1e-12 | |
| d1chua1 | 111 | a.7.3.1 (A:423-533) L-aspartate oxidase {Escherich | 7e-23 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 9e-21 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 5e-14 | |
| d1neka1 | 138 | a.7.3.1 (A:451-588) Succinate dehydogenase {Escher | 1e-17 | |
| d1d4ca3 | 146 | d.168.1.1 (A:360-505) Flavocytochrome c3 (respirat | 1e-17 | |
| d1kf6a1 | 134 | a.7.3.1 (A:443-576) Fumarate reductase {Escherichi | 2e-17 | |
| d2bs2a1 | 198 | a.7.3.1 (A:458-655) Fumarate reductase {Wolinella | 2e-16 | |
| d1y0pa3 | 143 | d.168.1.1 (A:362-504) Flavocytochrome c3 (respirat | 6e-16 | |
| d1jnra1 | 141 | a.7.3.1 (A:503-643) Adenylylsulfate reductase A su | 7e-15 | |
| d1qo8a3 | 146 | d.168.1.1 (A:360-505) Flavocytochrome c3 (respirat | 8e-15 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 7e-08 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 6e-06 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 2e-04 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 2e-04 | |
| d2gf3a1 | 281 | c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac | 5e-04 |
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Score = 203 bits (517), Expect = 6e-61
Identities = 101/301 (33%), Positives = 147/301 (48%), Gaps = 18/301 (5%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 142
D +IGSG AGL AL +A V V++K E +T YAQGG++AV +DS++SH++
Sbjct: 8 CDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVE 67
Query: 143 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGE----DGNLHLAREGGHSHHR 198
DT++AGA +CD V V + ++ LI G FD + + HL REGGHSH R
Sbjct: 68 DTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRR 127
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG---PDAVCHGVDTLNVE 255
I+HAAD TGRE+E L+ ++ PNI V E A+DL+ + G N
Sbjct: 128 ILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRN 187
Query: 256 TQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315
+ V +K +LA+GGA +Y TTNP +++GDG+AMA RA ++N V
Sbjct: 188 KETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANCGGVMVDDHGR 247
Query: 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD 375
D + + + G + N +E + A D+ R
Sbjct: 248 TD------VEGLYAIGEVSYTGLHGANRMASNSLLECLVY-----GWSAAEDITRRMPYA 296
Query: 376 Q 376
Sbjct: 297 H 297
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Score = 69.9 bits (170), Expect = 1e-13
Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 411 YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLE 470
G I A+ V G T+V GLY GEV+ TGLHGANR+ASNSLLE
Sbjct: 220 SGDGIAMAWRAGCRVANCGGVMV--DDHGRTDVEGLYAIGEVSYTGLHGANRMASNSLLE 277
Query: 471 ALVFARRA 478
LV+ A
Sbjct: 278 CLVYGWSA 285
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 196 bits (499), Expect = 5e-58
Identities = 102/341 (29%), Positives = 156/341 (45%), Gaps = 34/341 (9%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS--DS 136
V+ FD VIG+G AG+ AL++++ G T A+++K P S+T AQGG++ L + D+
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDN 64
Query: 137 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREG---- 192
E HM DT+ Y+ D + + +C GP+ I EL +G F R +DG ++ G
Sbjct: 65 WEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSK 124
Query: 193 ---GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
G R AAD TG + L + + + + ++F +A+DL+ DG C +
Sbjct: 125 NFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGCTAL 183
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 309
ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +
Sbjct: 184 CI---ETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVP--VQDMMG 238
Query: 310 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVV 369
PT + + L + K E V G L+ +G E L ++
Sbjct: 239 GIPTKVTGQALTVNEK---------GEDVVVPG--LFAVG-EIACVSVHGANRLGGNSLL 286
Query: 370 ARSI------DDQLKKRNEKYVLLDISHKPTEKILSHFPNI 404
+ + E+ L D S E L
Sbjct: 287 DLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRW 327
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 65.3 bits (158), Expect = 5e-12
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 418 QPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARR 477
+ +P + V GL+ GE+AC +HGANRL NSLL+ +VF R
Sbjct: 235 DMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRA 294
Query: 478 A 478
A
Sbjct: 295 A 295
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Score = 187 bits (474), Expect = 8e-55
Identities = 77/313 (24%), Positives = 133/313 (42%), Gaps = 23/313 (7%)
Query: 82 YFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVE 138
D +++G+G AGL A+ A+ +A+I+K P S+T A+GG +AV DS E
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFE 64
Query: 139 SHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHR 198
H DT+ G +LC+ + V P + +L G + R DG++++ R GG R
Sbjct: 65 YHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIER 124
Query: 199 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQE 258
AAD TG + L + + P I F+ HF +D+L D G+ +N+
Sbjct: 125 TWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD----DGHVRGLVAMNMMEGT 180
Query: 259 VVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADE 318
+V+ + ++A+GGAG +Y TN + TGDGM MA + +M ++
Sbjct: 181 LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMGGIETDQNC---- 236
Query: 319 GLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM----------PLYDERAELAPRDV 368
+ K + + G + N E + +
Sbjct: 237 --ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAI 294
Query: 369 VARSIDDQLKKRN 381
A++ + + ++
Sbjct: 295 EAQAAGVEQRLKD 307
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 440 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
ET ++GL+ GE + GLHGANRL SNSL E +VF R A
Sbjct: 237 ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLA 275
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 172 bits (436), Expect = 9e-49
Identities = 55/343 (16%), Positives = 109/343 (31%), Gaps = 37/343 (10%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHGT-----VAVITKAEPHESNTNYAQGG--------VSA 129
D +IG G +G A E A V ++ KA S AQG ++
Sbjct: 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA-VAQGLSAINTYIDLTG 80
Query: 130 VLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLA 189
+++E +++ + L ++ V + G + DG
Sbjct: 81 RSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVRE 140
Query: 190 REGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
+ H + + +++E F +LL + G
Sbjct: 141 GQWQIMIHGESYKPIIAEAAKMAVG--------EENIYERVFIFELLK-DNNDPNAVAGA 191
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHIY---------PSTTNPLVATGDGMAMAHRAQA 300
+V + F +K +LA+GGA ++ T + TG G M +A A
Sbjct: 192 VGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGA 251
Query: 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER 360
+++ F P L E K + N + + G +F
Sbjct: 252 MLTQAGFWVCGPEDLMPEEYA-KLFPLKYNRMTTVKGLFAIGDCAGANP-HKFSSGSFTE 309
Query: 361 AELAPRDVVARSIDDQLKKRNEKYVLLDIS---HKPTEKILSH 400
+A + V ++ + + V+ ++ + P E+ + +
Sbjct: 310 GRIAAKAAVRFILEQKPNPEIDDAVVEELKKKAYAPMERFMQY 352
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 163 bits (412), Expect = 9e-46
Identities = 83/342 (24%), Positives = 136/342 (39%), Gaps = 50/342 (14%)
Query: 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-----CP 133
V+Y D VIG G+AGL A+ + G + V++ S++ AQGG+ A L
Sbjct: 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSD 62
Query: 134 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-------- 185
D+ + H DT+ + CD + R+ P IREL A G + R G+
Sbjct: 63 GDNEDLHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQ 122
Query: 186 -------------LHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232
+H GG R + AD TG + A+ + +S+ + A
Sbjct: 123 KTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTMLFAVANECL-KLGVSIQDRKEA 181
Query: 233 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 292
I L D C+G ++ T +++ +++K TL+A+GG G IY +TTN +V G G
Sbjct: 182 IA----LIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT 237
Query: 293 AMAHRAQ-AVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGM- 350
A+A A + NM ++ A E + GG + +
Sbjct: 238 AIALETGIAQLGNMGGIRTDYRGEAKLKGLFSA---GEAACWDMHGFNRLGGNSVSEAVV 294
Query: 351 ------ERFMPLYD-ERAELAPRDVVARSIDDQLKKRNEKYV 385
E F + +L + + ++ K E Y+
Sbjct: 295 AGMIVGEYFAEHCANTQVDLETKTL------EKFVKGQEAYM 330
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 421 PVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 480
A GG+R +GE ++GL+ AGE AC +HG NRL NS+ EA+V +
Sbjct: 242 ETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGE 301
Query: 481 PSIDHKKSTSIDLSA 495
+H +T +DL
Sbjct: 302 YFAEHCANTQVDLET 316
|
| >d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Score = 132 bits (332), Expect = 3e-37
Identities = 61/124 (49%), Positives = 80/124 (64%), Gaps = 9/124 (7%)
Query: 305 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELA 364
+EF QFHPTAL +FL+TEA+RG+G L RFMP +DER ELA
Sbjct: 1 LEFNQFHPTALYHPQAR---------NFLLTEALRGEGAYLKRPDGTRFMPDFDERGELA 51
Query: 365 PRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVP 424
PRD+VAR+ID ++K+ + LDISHKP + I HFP I + L G+D+T +P+P+VP
Sbjct: 52 PRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVP 111
Query: 425 AAHY 428
AAHY
Sbjct: 112 AAHY 115
|
| >d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 131 bits (330), Expect = 8e-37
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 305 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-EL 363
ME QFHPT +A G L+TE RG+GG L N ERFM Y A +L
Sbjct: 1 MEMWQFHPTGIAGAG------------VLVTEGCRGEGGYLLNKHGERFMERYAPNAKDL 48
Query: 364 APRDVVARSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDIT 416
A RDVVARSI ++++ + L + H E + S P I + +D
Sbjct: 49 AGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPV 108
Query: 417 SQPIPVVPAAHY 428
+PIPV+P HY
Sbjct: 109 KEPIPVIPTCHY 120
|
| >d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Score = 117 bits (294), Expect = 1e-31
Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 31/143 (21%)
Query: 305 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY------- 357
MEFVQ+HPT L G L+TE RG+GGIL N R++ Y
Sbjct: 1 MEFVQYHPTGLPGSG------------ILMTEGCRGEGGILVNKNGYRYLQDYGMGPETP 48
Query: 358 -----DERAELAPRDVVARSIDDQLKKRNEK------YVLLDISHKPTEKILSHFPNIAA 406
++ EL PRD V+++ + +K N V LD+ H +K+ P I
Sbjct: 49 LGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE 108
Query: 407 ECLKY-GLDITSQPIPVVPAAHY 428
Y G+D +PIPV P AHY
Sbjct: 109 LAKAYVGVDPVKEPIPVRPTAHY 131
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 116 bits (290), Expect = 2e-29
Identities = 61/311 (19%), Positives = 98/311 (31%), Gaps = 40/311 (12%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG-------VSAVLCPS 134
D V+GSG AG A+ G V +I K N A GG +
Sbjct: 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKIT 76
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
DS E +DT+ G + D V+V+ + D + + A+GA + GG
Sbjct: 77 DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLT-------DVGMMGGA 129
Query: 195 SHHRIVHAADMTGREIE-RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 253
S +R G +L NI + + I++L G
Sbjct: 130 SVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGM-- 187
Query: 254 VETQEVVRFISKVTLLASGGAGHIYP------------STTNPLVATGDGMAMAHRAQAV 301
+ + +LA+GG +TN A GDG+ +A A
Sbjct: 188 --YKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGA 245
Query: 302 ISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA 361
+ +M+++ + + I + E G G N +
Sbjct: 246 LKDMQYIDTKAEVMNAKKQVIP------GLYGAGEVTGGVHGA--NRLGGNAISDIITFG 297
Query: 362 ELAPRDVVARS 372
LA + S
Sbjct: 298 RLAGEEAAKYS 308
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 57.7 bits (138), Expect = 1e-09
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 440 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
+ + GLY AGEV G+HGANRL N++ + + F R A
Sbjct: 263 KQVIPGLYGAGEVTG-GVHGANRLGGNAISDIITFGRLA 300
|
| >d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 108 bits (270), Expect = 1e-28
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 20/132 (15%)
Query: 305 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMP-LYDERAEL 363
ME VQFHPT L G L+TE RGDGGIL ++ RFMP E+ EL
Sbjct: 1 MEAVQFHPTPLFPSG------------ILLTEGCRGDGGILRDVDGHRFMPDYEPEKKEL 48
Query: 364 APRDVVARSIDDQLKKR------NEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDIT 416
A RDVV+R + + ++K +++ LDIS + I ++ ++ C + G+D
Sbjct: 49 ASRDVVSRRMIEHIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPA 108
Query: 417 SQPIPVVPAAHY 428
+ PV+P HY
Sbjct: 109 EKWAPVLPMQHY 120
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 99.3 bits (246), Expect = 2e-23
Identities = 60/286 (20%), Positives = 107/286 (37%), Gaps = 32/286 (11%)
Query: 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS-- 134
G + V+G+G AG +L K G V ++ KA N+ + GG++AV
Sbjct: 15 GPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQT 74
Query: 135 -----DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLA 189
D VE ++D + G D + V ++ + D ++ L ++GA+ D +
Sbjct: 75 AHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGA-- 132
Query: 190 REGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 249
H +G EI L +A + + D
Sbjct: 133 ---RVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLV-----VNDDHSVVG 184
Query: 250 DTLNVETQEVVRFISKVTLLASGGAGHIY------------PSTTNPLVATGDGMAMAHR 297
++ + +K +LA+GG G +++N + ATGDG+ MA
Sbjct: 185 AVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKE 244
Query: 298 AQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGG 343
A ++++++VQ A L ++ K + F E G G
Sbjct: 245 IGASMTDIDWVQAAINTTA-SVLDLQ-SKPIDGLFAAGEVTGGVHG 288
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 67.3 bits (163), Expect = 1e-12
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 443 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
+ GL+ AGEV G+HG NRL N++ + +VF R A
Sbjct: 273 IDGLFAAGEVTG-GVHGYNRLGGNAIADTVVFGRIA 307
|
| >d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 111 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Score = 91.6 bits (227), Expect = 7e-23
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 522 EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRN 581
EL+ MW YVGIVR+T L+ A RI L+ E + Y + V E+RN
Sbjct: 16 HNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEY-----YAHFRVSNNLLELRN 70
Query: 582 LFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP 623
L A+L+V A+ R ESRGLH+ +D+P + + P+I+ P
Sbjct: 71 LVQVAELIVRCAMMRKESRGLHFTLDYPELLTHSG-PSILSP 111
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 91.6 bits (226), Expect = 9e-21
Identities = 64/283 (22%), Positives = 91/283 (32%), Gaps = 35/283 (12%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG-------GVSAVLCPS 134
D +IGSG AGL A+ G V ++ K NT A G A L
Sbjct: 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIE 83
Query: 135 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 194
D + + DT+ G + D E V+V+ D I L ++GA + R GG
Sbjct: 84 DKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMT-------DVGRMGGA 136
Query: 195 SHHRIVHAA--DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 252
S +R G + + L + V L GV
Sbjct: 137 SVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILED----ASGKVTGVLVK 192
Query: 253 NVETQEVVRFISKVTLLASGGAGHIYP------------STTNPLVATGDGMAMAHRAQA 300
T + ++A+GG TN ATGDG+ +A +A A
Sbjct: 193 GEYT-GYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGA 251
Query: 301 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGG 343
++E A E K K + E G G
Sbjct: 252 ATRDLEMGGLVIDTKA-EVKSEKTGKPITGLYAAGEVTGGVHG 293
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 71.2 bits (173), Expect = 5e-14
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 425 AAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478
+ + GLY AGEV G+HGANRL N++ + + + R A
Sbjct: 260 GLVIDTKAEVKSEKTGKPITGLYAAGEVTG-GVHGANRLGGNAISDIVTYGRIA 312
|
| >d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 138 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 77.5 bits (190), Expect = 1e-17
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 522 EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMR 580
+RK LQ M + R ++ ++ + + + E +E E+
Sbjct: 8 AIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELD 67
Query: 581 NLFCCAKLVVSSALARHESRGLHYMVDFP 609
NL A SA R ESRG H DFP
Sbjct: 68 NLMETAYATAVSANFRTESRGAHSRFDFP 96
|
| >d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 77.9 bits (191), Expect = 1e-17
Identities = 37/165 (22%), Positives = 57/165 (34%), Gaps = 34/165 (20%)
Query: 307 FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPR 366
++Q HPT G +ITEAVRG+G I+ N RFM E+ R
Sbjct: 1 YIQAHPTYSPAGG------------VMITEAVRGNGAIVVNREGNRFM------NEITTR 42
Query: 367 DVVARSIDDQLKKRNEKYVLLDISHKPT---------EKILSHFPNIAAECLKYGLDITS 417
D + +I Q K Y++ D S + + I+ I + +
Sbjct: 43 DKASAAILQQ--KGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAE 100
Query: 418 QPIPVVPAAHYMCGGVRA----GLQGETNVRGLYVAGEVACTGLH 458
V ++ G A V + A E+A +H
Sbjct: 101 LAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAP-AVH 144
|
| >d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Score = 76.7 bits (188), Expect = 2e-17
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 522 EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHGWEQTFVGLEACEMR 580
++R E+ M GI R+ +Q ++ EL+ ++ + + L E+
Sbjct: 8 KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELG 67
Query: 581 NLFCCAKLVVSSALARHESRGLHYMVDFPHVEEN 614
+ A+ + SA+AR ESRG H +D E +
Sbjct: 68 HGLNVAECMAHSAMARKESRGAHQRLDEGCTERD 101
|
| >d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 198 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 75.5 bits (185), Expect = 2e-16
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 522 EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHGWEQTFVGLEACEMR 580
+++ ++ +M VGI R L+ A ++EL + + + EA +
Sbjct: 8 KIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVP 67
Query: 581 NLFCCAKLVVSSALARHESRGLHYMVDFPH 610
+ A V AL R ESRG H D+P
Sbjct: 68 MMLKVALCVAKGALDRTESRGAHNREDYPK 97
|
| >d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 72.9 bits (178), Expect = 6e-16
Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 34/164 (20%)
Query: 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRD 367
+Q HPT G ++TEAVRG+G IL N +RF+ E+ RD
Sbjct: 1 IQAHPTLSVKGG------------VMVTEAVRGNGAILVNREGKRFVN------EITTRD 42
Query: 368 VVARSIDDQLKKRNEKYVLLDISHKPTEKILSH---------FPNIAAECLKYGLDITSQ 418
+ +I Q K Y++ D S + + + ++ G+D +
Sbjct: 43 KASAAILAQTGKSA--YLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKAL 100
Query: 419 PIPVVPAAHYMCGGVRAGLQGETNVR----GLYVAGEVACTGLH 458
V + G + R G Y A EV G+H
Sbjct: 101 TETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTP-GVH 143
|
| >d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 141 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 69.7 bits (170), Expect = 7e-15
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 521 KEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE-WETYLFEHGWEQTFVGLEACEM 579
+ LQ IM Y + + + + L + + A E+
Sbjct: 13 WQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLHELMRAWEL 72
Query: 580 RNLFCCAKLVVSSALARHESRG--LHYMVDFPHVEENKRLPTIIL 622
+ A+ V L R E+R +Y D+P + + + +
Sbjct: 73 VHRVWTAEAHVRHMLFRKETRWPGYYYRTDYPELNDEEWKCFVCS 117
|
| >d1qo8a3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 70.1 bits (170), Expect = 8e-15
Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 18/154 (11%)
Query: 311 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVA 370
HPT D LI+E VRG G ++ N RF+ R + + +
Sbjct: 1 HPTVGKDSR------------ILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQ 48
Query: 371 RSIDDQLKKRNEKYVLL-DISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYM 429
+ N+ Y + ++L + G+ + V Y+
Sbjct: 49 PGQFAWIIFDNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYV 108
Query: 430 CGGVRAGLQGETN----VRGLYVAGEVACTGLHG 459
G + Y A +VA G+H
Sbjct: 109 ASGKDTAFGRADMPLNMTQSPYYAVKVAP-GIHH 141
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 52.0 bits (123), Expect = 7e-08
Identities = 40/263 (15%), Positives = 81/263 (30%), Gaps = 19/263 (7%)
Query: 87 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTI 145
V+GSGV GL AL +A+ G +V ++ + P + ++ + M T
Sbjct: 11 VLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANW-----TPFMTLTD 65
Query: 146 VAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM 205
++ T + P + F + EDG L + ++R + +++
Sbjct: 66 GPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPSSEC 125
Query: 206 TGREIERALLEAVVSDPNISVFEHHFAIDL--------LTTLDGP-DAVCHGVDTLNVET 256
I V P + L +T+L+ D V+ +
Sbjct: 126 PPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFERRTVTSLEQAFDGADLVVNATGLGA 185
Query: 257 QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 316
+ + + A I T +++ + E H +
Sbjct: 186 KSIAGIDDQARGGPRVEAERIVLPLDR----TKSPLSLGRGSARAAKEKEVTLVHAYGFS 241
Query: 317 DEGLPIKPKKTRENSFLITEAVR 339
G + + L+ EA +
Sbjct: 242 SAGYQQSWGAAEDVAQLVDEAFQ 264
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 46.0 bits (108), Expect = 6e-06
Identities = 35/267 (13%), Positives = 72/267 (26%), Gaps = 45/267 (16%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVES 139
+Y + +IG+G AGL A ++AK G +V V + + GG
Sbjct: 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNF--------- 53
Query: 140 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI 199
+ A + V+ + + + +
Sbjct: 54 TNLEVTPAHYLSQNPHFVKSALARYTNWDF--------ISLVAEQGITYHEKELGQLFCD 105
Query: 200 VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEV 259
A + +L++ + + + + V + + +
Sbjct: 106 EGAEQI------VEMLKSECDKYGAKILLRSEVSQ-VERIQNDEKVRFVLQVNSTQ---- 154
Query: 260 VRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 319
+ K ++A+GG P AT G +A + + T +
Sbjct: 155 --WQCKNLIVATGGLS--MPGLG----ATPFGYQIAEQFGIPV----IPPRAVTMGGVDT 202
Query: 320 LPIKPK----KTRENSFLITEAVRGDG 342
I K + I E + G
Sbjct: 203 KVISSKTMESNQVSGLYFIGEVLDVTG 229
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 81 KYFDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGGVSA 129
++++ VIG G+ G A +AK A+ T+ A G + A
Sbjct: 3 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGA 52
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAV 130
+D VIG G +GL A+ A+ G V ++ K + GG V
Sbjct: 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNV 51
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Score = 40.1 bits (92), Expect = 5e-04
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESH 140
FD V+G+G G+ ++AK G ++ +P H + +++ +
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 141 MQ 142
+
Sbjct: 64 LA 65
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 641 | |||
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 100.0 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 100.0 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 100.0 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 100.0 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 100.0 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 100.0 | |
| d2bs2a1 | 198 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.94 | |
| d1neka1 | 138 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 99.94 | |
| d1jnra1 | 141 | Adenylylsulfate reductase A subunit {Archaeon Arch | 99.93 | |
| d1kf6a1 | 134 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 99.93 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.92 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.91 | |
| d1chua1 | 111 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 99.87 | |
| d1chua3 | 116 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 99.86 | |
| d1kf6a3 | 132 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 99.81 | |
| d2bs2a3 | 121 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.81 | |
| d1neka3 | 120 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 99.78 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.73 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.64 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.63 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.61 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.59 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.59 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.57 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.56 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.56 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.55 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.55 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.53 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.47 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.46 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.43 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 99.42 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.37 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 99.33 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.32 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 99.31 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 99.3 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.28 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 99.25 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 99.21 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.2 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.2 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 99.19 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 99.18 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 99.15 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.09 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 99.09 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.08 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.06 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 99.06 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.03 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 99.0 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.96 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.89 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.85 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.71 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.53 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.52 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.51 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.43 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.43 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.41 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.41 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.4 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.4 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.37 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.32 | |
| d1qo8a3 | 146 | Flavocytochrome c3 (respiratory fumarate reductase | 98.32 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.31 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.28 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.27 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 98.25 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.25 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.2 | |
| d1d4ca3 | 146 | Flavocytochrome c3 (respiratory fumarate reductase | 98.18 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.16 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 98.13 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.1 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.08 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.07 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.07 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.06 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.01 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 97.97 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 97.97 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.96 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 97.94 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 97.89 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.79 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.78 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.77 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 97.71 | |
| d1y0pa3 | 143 | Flavocytochrome c3 (respiratory fumarate reductase | 97.69 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.59 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.58 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.5 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.15 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 97.15 | |
| d1jnra3 | 145 | Adenylylsulfate reductase A subunit {Archaeon Arch | 96.9 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.61 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 96.46 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 96.46 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 96.23 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 96.22 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 96.19 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.15 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.12 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 95.71 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.45 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 95.34 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.2 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.13 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.08 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.98 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 93.86 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.44 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.55 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 91.58 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 90.55 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.53 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 89.82 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 89.3 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 89.02 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 88.99 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 88.8 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 88.75 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.29 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.84 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 87.41 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 87.38 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 87.16 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 87.1 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 86.6 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 86.31 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 86.31 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.51 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 85.5 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 85.21 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 84.42 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 83.95 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 83.72 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 83.51 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.4 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.43 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 82.36 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 81.44 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 81.38 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.98 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 80.87 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 80.84 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.31 |
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=100.00 E-value=0 Score=342.68 Aligned_cols=280 Identities=28% Similarity=0.399 Sum_probs=236.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECC-------CCCCCHHHHHHHHHHHCC
Q ss_conf 9632126899996079999999988669-86999715899995101358602104-------997889999999999565
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~-------~~~d~~~~~~~~~~~~g~ 149 (641)
.+..++||||||+|+|||+||+.|++.| +|+||||....+|+|.++.|+++... ...|+++.++.+++..+.
T Consensus 15 ~~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~ 94 (317)
T d1qo8a2 15 GPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGR 94 (317)
T ss_dssp CCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 99870588998968999999999997799389996778899843530899632353455523557757788999987404
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7889999999997829999999985992035899973223579820131443--16872799999999999819994898
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVH--AADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~--~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
+.+++++++.+++++++.++|+.++|++|... ...+++..+|... ..+.++..+...|.+.+++ .|++++
T Consensus 95 ~~~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~-------~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~-~g~~i~ 166 (317)
T d1qo8a2 95 QQNDIKLVTILAEQSADGVQWLESLGANLDDL-------KRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKE-QGIDTR 166 (317)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEE-------ECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHH-TTCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEE
T ss_conf 65206677888766555423577764201213-------3346765564333223332204666999998652-141343
Q ss_pred CCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCC------------CCCCCCCCCCCCHHHHH
Q ss_conf 542788877448999755999999965899499998277999699778679------------89977666733216888
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY------------PSTTNPLVATGDGMAMA 295 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~------------~~~~~~~~~~G~g~~~a 295 (641)
.++.+++|+.++++ +|.||++.+. ++..+.|.||.||||||||+..+ ..+.+++.++|||+.|+
T Consensus 167 ~~~~v~~l~~~~~g---~V~Gv~~~~~-~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdGi~ma 242 (317)
T d1qo8a2 167 LNSRVVKLVVNDDH---SVVGAVVHGK-HTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMA 242 (317)
T ss_dssp CSEEEEEEEECTTS---BEEEEEEEET-TTEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCEECSCTTCSCHHHHHH
T ss_pred ECCCHHHEEECCCC---CCEEEEEECC-CCEEEEEECCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 20210210100213---3112476325-4058997236238831433337999998640255554458999484999999
Q ss_pred HHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86599560533322342000389998898777776312420211799689819988554445322224863589999999
Q 006532 296 HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD 375 (641)
Q Consensus 296 ~~aGa~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~ 375 (641)
+++|+.+.||||+|++|... ..
T Consensus 243 ~~~Ga~l~~me~vq~~~~~~---------------------------~~------------------------------- 264 (317)
T d1qo8a2 243 KEIGASMTDIDWVQAAINTT---------------------------AS------------------------------- 264 (317)
T ss_dssp HHTTBCEESTTCEEECBCTT---------------------------CE-------------------------------
T ss_pred HHCCCEECCCCCEEECCCCC---------------------------CE-------------------------------
T ss_conf 98698245872421036874---------------------------07-------------------------------
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCC
Q ss_conf 99936997599917899965899458109999998199999997447420021147348689997326870232544677
Q 006532 376 QLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACT 455 (641)
Q Consensus 376 ~~~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~g 455 (641)
.+|.. .++||||||||||+ +
T Consensus 265 ----------~~d~~-------------------------------------------------~~~i~gl~aaGe~~-~ 284 (317)
T d1qo8a2 265 ----------VLDLQ-------------------------------------------------SKPIDGLFAAGEVT-G 284 (317)
T ss_dssp ----------EEBTT-------------------------------------------------SCEEEEEEECSTTB-C
T ss_pred ----------EECCC-------------------------------------------------CCEECCEEEHHHHC-C
T ss_conf ----------86799-------------------------------------------------99879876503340-6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88899820323168999999999899898531
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 456 g~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~ 487 (641)
|+||+|||+||++.+++|||++||++|++|++
T Consensus 285 g~hG~nrlggnsl~~~~vfg~~ag~~aa~~~~ 316 (317)
T d1qo8a2 285 GVHGYNRLGGNAIADTVVFGRIAGDNAAKHAL 316 (317)
T ss_dssp SSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77787766310377878879999999999860
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=341.45 Aligned_cols=294 Identities=38% Similarity=0.583 Sum_probs=253.1
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCC--CCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 9632126899996079999999988669-869997158999951013586021049--9788999999999956578899
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~ 154 (641)
.+.++|||||||+|+|||+||++|+++| +|+|+||....+|+|.+++|||++... ..|+++.|+.|+++.+.+++++
T Consensus 3 ~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~ 82 (330)
T d1neka2 3 LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQ 82 (330)
T ss_dssp CCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHCCCH
T ss_conf 87516999999967899999999987299089996789999718888645844757888889999999999831122689
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-------CCCEEECCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999997829999999985992035899973223579820-------13144316872799999999999819994898
Q 006532 155 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS-------HHRIVHAADMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 155 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~-------~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
++++.+++++++.++|++++|++|.++.+|.+.....++++ .++..+..+.+|..+...|.+++.+ .+++++
T Consensus 83 ~~v~~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~-~~v~~~ 161 (330)
T d1neka2 83 DAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLK-NHTTIF 161 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCEEE
T ss_conf 9999999870899999862245420258985301105765323467656533204784099999999999986-297499
Q ss_pred CCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCC
Q ss_conf 54278887744899975599999996589949999827799969977867989977666733216888865995605333
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 307 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~ 307 (641)
.++.++++++++++ ++.|+.+.+..+|+.+.+.|+.|||||||++++|..+++|+.++|||++|++++|+.+.||++
T Consensus 162 ~~~~~~~l~~~~~~---~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~~a~~aGa~l~d~~~ 238 (330)
T d1neka2 162 SEWYALDLVKNQDG---AVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMMG 238 (330)
T ss_dssp CSEEEEEEEECTTS---CEEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEESECC
T ss_pred EEEEEEEEEEECCC---CCEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCCC
T ss_conf 87788874320233---430035687369958998535799768776566667689986374999999976988355443
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 22342000389998898777776312420211799689819988554445322224863589999999999369975999
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLL 387 (641)
Q Consensus 308 ~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 387 (641)
. +|..+.. ....++..|++
T Consensus 239 ~--~~~~~~~------------------------~~~~~~~~g~~----------------------------------- 257 (330)
T d1neka2 239 G--IPTKVTG------------------------QALTVNEKGED----------------------------------- 257 (330)
T ss_dssp B--EEBCTTC------------------------EEEEECSSSCE-----------------------------------
T ss_pred C--CCCCCCC------------------------CEEECCCCCCC-----------------------------------
T ss_conf 1--3203445------------------------24422567875-----------------------------------
Q ss_pred ECCCCCHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 17899965899458109999998199999997447420021147348689997326870232544677888998203231
Q 006532 388 DISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNS 467 (641)
Q Consensus 388 d~~~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~ 467 (641)
+.+|||||+||++|.|+||+|||+||+
T Consensus 258 -----------------------------------------------------~v~~gl~a~Ge~a~~g~HganrL~~ns 284 (330)
T d1neka2 258 -----------------------------------------------------VVVPGLFAVGEIACVSVHGANRLGGNS 284 (330)
T ss_dssp -----------------------------------------------------EEEEEEEECSSSEECSSSTTSCCTTHH
T ss_pred -----------------------------------------------------EECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -----------------------------------------------------203564206763246663322235501
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6899999999989989853104
Q 006532 468 LLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 468 l~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
+.+++|||++||+.++++.+..
T Consensus 285 l~~~~v~g~~ag~~~~~~~~~~ 306 (330)
T d1neka2 285 LLDLVVFGRAAGLHLQESIAEQ 306 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8999999999999999874125
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=314.92 Aligned_cols=281 Identities=34% Similarity=0.557 Sum_probs=255.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC--C-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHH
Q ss_conf 63212689999607999999998866--9-86999715899995101358602104997889999999999565788999
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDE 155 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~--G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~ 155 (641)
++.+|||||||+|+|||+||++|++. | +|+||||....+|+|.+++||+++...+.|+++.|+.|++..+.++++++
T Consensus 2 ~~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~ 81 (311)
T d1kf6a2 2 QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQD 81 (311)
T ss_dssp EEEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHH
T ss_pred CCEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH
T ss_conf 71246999999669999999999986898979999789999985788765374025899999999988876036751799
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEE
Q ss_conf 99999978299999999859920358999732235798201314431687279999999999981999489854278887
Q 006532 156 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDL 235 (641)
Q Consensus 156 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l 235 (641)
+++.+++++++.+.|+.++|++|.+...+.+.....+++..++..+..+.++..+...+.+++.+..+|++++++++++|
T Consensus 82 ~v~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~L 161 (311)
T d1kf6a2 82 VVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDI 161 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
T ss_conf 99999875147677665035554444311123445531133432112220146777768999870586406751470344
Q ss_pred EECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCEEE
Q ss_conf 74489997559999999658994999982779996997786798997766673321688886599560533322342000
Q 006532 236 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 315 (641)
Q Consensus 236 ~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~~~~~p~~~ 315 (641)
+.+ ++ +|.|+++.+..+|+.+.|.||+|||||||++++|..++|++.+||||+.||+++|+.+.||||+|+||+..
T Consensus 162 l~d-~g---~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa~l~dme~iq~~p~~~ 237 (311)
T d1kf6a2 162 LVD-DG---HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMGGIETDQNCE 237 (311)
T ss_dssp EEE-TT---EEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEESCCEEECCTTSB
T ss_pred EEC-CC---CCEEEEEEECCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCH
T ss_conf 744-89---62467999768996899977979976788654445557999957679999885535602033211110020
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 38999889877777631242021179968981998855444532222486358999999999936997599917899965
Q 006532 316 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE 395 (641)
Q Consensus 316 ~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ld~~~~~~~ 395 (641)
T Consensus 238 -------------------------------------------------------------------------------- 237 (311)
T d1kf6a2 238 -------------------------------------------------------------------------------- 237 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89945810999999819999999744742002114734868999732687023254467788899820323168999999
Q 006532 396 KILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFA 475 (641)
Q Consensus 396 ~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G 475 (641)
+..+|||+++++.+.|+||.|+++.+++.+.++++
T Consensus 238 ---------------------------------------------~~~~~~~~~~~~~~~g~~g~n~~~~~~~~e~~~~~ 272 (311)
T d1kf6a2 238 ---------------------------------------------TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFG 272 (311)
T ss_dssp ---------------------------------------------CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHH
T ss_pred ---------------------------------------------HCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECC
T ss_conf ---------------------------------------------00258875761324321840603434565021047
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9998998985310
Q 006532 476 RRAVQPSIDHKKS 488 (641)
Q Consensus 476 ~~Ag~~aa~~~~~ 488 (641)
+.+++.+.+++..
T Consensus 273 ~~~~~~~~~~~~~ 285 (311)
T d1kf6a2 273 RLAGEQATERAAT 285 (311)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCC
T ss_conf 1779999986140
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=100.00 E-value=0 Score=318.09 Aligned_cols=274 Identities=27% Similarity=0.408 Sum_probs=231.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCC-------CCCCHHHHHHHHHHHCCC
Q ss_conf 632126899996079999999988669-869997158999951013586021049-------978899999999995657
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAY 150 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~-------~~d~~~~~~~~~~~~g~~ 150 (641)
+..+|||||||+|++||+||+.|+++| +|+||||....+|+|.++.|++..... ..++++.+..+.+..+.+
T Consensus 13 p~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~ 92 (308)
T d1y0pa2 13 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQN 92 (308)
T ss_dssp CSEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 88868789999589999999999988993899964798998630058887444430555531011077788888765431
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC--CHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 8899999999978299999999859920358999732235798201314431687--27999999999998199948985
Q 006532 151 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM--TGREIERALLEAVVSDPNISVFE 228 (641)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~--~g~~~~~~l~~~~~~~~gv~i~~ 228 (641)
+++++++..++++.++.++|+.++|++|... ....++...+..++... .+..+...+.+.+.+ .|+++++
T Consensus 93 ~~d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-~gv~i~~ 164 (308)
T d1y0pa2 93 INDPALVKVLSSHSKDSVDWMTAMGADLTDV-------GMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVK-RNIDLRM 164 (308)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEE-------ECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHH-TTCEEES
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEE
T ss_conf 1346778899986137789999809973114-------5444665564323455530378999999999872-4646997
Q ss_pred CEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCC------------CCCCCCCCCCCHHHHHH
Q ss_conf 427888774489997559999999658994999982779996997786798------------99776667332168888
Q 006532 229 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP------------STTNPLVATGDGMAMAH 296 (641)
Q Consensus 229 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~------------~~~~~~~~~G~g~~~a~ 296 (641)
++++++|+.+++| +|.||++.+.. +....|+||.||||||||+.++. .+++++.++|||+.|++
T Consensus 165 ~~~v~~li~~~~G---~V~Gv~~~~~~-~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdg~~ma~ 240 (308)
T d1y0pa2 165 NTRGIEVLKDDKG---TVKGILVKGMY-KGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAE 240 (308)
T ss_dssp SEEEEEEEECTTS---CEEEEEEEETT-TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHH
T ss_pred EECCCHHHHHCCC---CCCCCCCCCCC-CCEEEEECCEEEECCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHH
T ss_conf 3030022221022---22211124666-6506860570797267631149999874202233100588756477999999
Q ss_pred HCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 65995605333223420003899988987777763124202117996898199885544453222248635899999999
Q 006532 297 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 376 (641)
Q Consensus 297 ~aGa~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~ 376 (641)
++|+.+.||||+||||+.+...
T Consensus 241 ~aGa~l~~me~vq~~p~~~~~~---------------------------------------------------------- 262 (308)
T d1y0pa2 241 NAGGALKDMQYIDTKAEVMNAK---------------------------------------------------------- 262 (308)
T ss_dssp HTTCCEECTTCBCTTCEEECTT----------------------------------------------------------
T ss_pred HCCCCCCCCCCEECCCCEECCC----------------------------------------------------------
T ss_conf 8699702846031236246689----------------------------------------------------------
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCC
Q ss_conf 99369975999178999658994581099999981999999974474200211473486899973268702325446778
Q 006532 377 LKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTG 456 (641)
Q Consensus 377 ~~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~gg 456 (641)
.+.+|||||+||++ +|
T Consensus 263 ---------------------------------------------------------------~~~~~gl~a~G~~~-~g 278 (308)
T d1y0pa2 263 ---------------------------------------------------------------KQVIPGLYGAGEVT-GG 278 (308)
T ss_dssp ---------------------------------------------------------------SCEEEEEEECSTTE-ES
T ss_pred ---------------------------------------------------------------CCCCCCEEEHHHHH-CC
T ss_conf ---------------------------------------------------------------97236530224450-56
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889982032316899999999989989853
Q 006532 457 LHGANRLASNSLLEALVFARRAVQPSIDHK 486 (641)
Q Consensus 457 ~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~ 486 (641)
+||+||+|++++.+++|||++||++|++|+
T Consensus 279 ~hg~nrlg~~~~~~~~~~g~~ag~~a~~~~ 308 (308)
T d1y0pa2 279 VHGANRLGGNAISDIITFGRLAGEEAAKYS 308 (308)
T ss_dssp SSTTSCCTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 667677730137788888999999999609
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=100.00 E-value=0 Score=312.29 Aligned_cols=282 Identities=27% Similarity=0.369 Sum_probs=232.6
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECC-------CCCCCHHHHHHHHHHHCC
Q ss_conf 9632126899996079999999988669-86999715899995101358602104-------997889999999999565
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 149 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~-------~~~d~~~~~~~~~~~~g~ 149 (641)
....++||+|||+|+|||+||+.|+++| +|+||||....+|+|.++.|+++... ...|+++.++.++...+.
T Consensus 19 ~~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~ 98 (322)
T d1d4ca2 19 GVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGR 98 (322)
T ss_dssp CCCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 99986419999969899999999998899289996888899852025876534576155421457899999999874045
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECC--CCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 788999999999782999999998599203589997322357982013144316--872799999999999819994898
Q 006532 150 YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA--DMTGREIERALLEAVVSDPNISVF 227 (641)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~--~~~g~~~~~~l~~~~~~~~gv~i~ 227 (641)
++++++.+..+++++.+.++|+.++|++|... ...++++.++..+.. ...+..+...|.+.+.++ |++|+
T Consensus 99 ~~~d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-gv~i~ 170 (322)
T d1d4ca2 99 NINDPELVKVLANNSSDSIDWLTSMGADMTDV-------GRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKR-GTDIR 170 (322)
T ss_dssp TCSCHHHHHHHHHTHHHHHHHHHHTTCCCCEE-------ECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHT-TCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCEEE
T ss_conf 44587774554453455544555305330002-------32246545644454200001578999999998744-86699
Q ss_pred CCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCC------------CCCCCCCCCCCHHHHH
Q ss_conf 5427888774489997559999999658994999982779996997786798------------9977666733216888
Q 006532 228 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP------------STTNPLVATGDGMAMA 295 (641)
Q Consensus 228 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~------------~~~~~~~~~G~g~~~a 295 (641)
++++|++|+.+++| +|.||++.+.. +....|+||.||||||||++++. .+++++.++|+|+.|+
T Consensus 171 ~~t~v~~li~d~~G---~V~Gv~~~~~~-~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a 246 (322)
T d1d4ca2 171 LNSRVVRILEDASG---KVTGVLVKGEY-TGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVA 246 (322)
T ss_dssp TTEEEEEEECCSSS---CCCEEEEEETT-TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHH
T ss_pred EEEECCCCCCCCCC---CCCCEEEEEEC-CCEEEEECCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 85310221001232---10433788604-617999479699918972208999986284323651138998618899999
Q ss_pred HHCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 86599560533322342000389998898777776312420211799689819988554445322224863589999999
Q 006532 296 HRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD 375 (641)
Q Consensus 296 ~~aGa~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~ 375 (641)
+++|+.+.+||+.... + +..
T Consensus 247 ~~aGa~~~~~e~~~~~---~-------------------------------~~~-------------------------- 266 (322)
T d1d4ca2 247 LQAGAATRDLEMGGLV---I-------------------------------DTK-------------------------- 266 (322)
T ss_dssp HHTTBCEECTTCCEEC---C-------------------------------CTT--------------------------
T ss_pred HHCCCCCEECCCCEEE---E-------------------------------CCC--------------------------
T ss_conf 9849850102443277---3-------------------------------586--------------------------
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCC
Q ss_conf 99936997599917899965899458109999998199999997447420021147348689997326870232544677
Q 006532 376 QLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACT 455 (641)
Q Consensus 376 ~~~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~g 455 (641)
. -.+++...|+|||||||||++ +
T Consensus 267 -------~-------------------------------------------------~~~~~~~~~~v~Glya~Ge~~-~ 289 (322)
T d1d4ca2 267 -------A-------------------------------------------------EVKSEKTGKPITGLYAAGEVT-G 289 (322)
T ss_dssp -------C-------------------------------------------------EEEBTTTSSEEEEEEECGGGB-C
T ss_pred -------E-------------------------------------------------EEEECCCCCEECCEEECHHHC-C
T ss_conf -------2-------------------------------------------------888779998817657854104-8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 888998203231689999999998998985310
Q 006532 456 GLHGANRLASNSLLEALVFARRAVQPSIDHKKS 488 (641)
Q Consensus 456 g~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~~ 488 (641)
|+||+||+|||++.+++|||++||++|++|++.
T Consensus 290 gvhG~nrlg~~~~~e~~v~g~~ag~~aa~~~~~ 322 (322)
T d1d4ca2 290 GVHGANRLGGNAISDIVTYGRIAGASAAKFAKD 322 (322)
T ss_dssp SSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 764654144667889999999999999998519
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=100.00 E-value=4.2e-43 Score=294.13 Aligned_cols=279 Identities=34% Similarity=0.522 Sum_probs=246.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCC-----CCCCHHHHHHHHHHHCCCCC
Q ss_conf 632126899996079999999988669-869997158999951013586021049-----97889999999999565788
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-----PSDSVESHMQDTIVAGAYLC 152 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~-----~~d~~~~~~~~~~~~g~~~~ 152 (641)
+...|||||||+|+|||+||+.|+++| +|+||||....+|+|.+++||+++... +.|+++.++.++...+.+++
T Consensus 2 ~~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S~~a~GGi~a~~~~~~~~~~ds~~~~~~d~~~~g~~~~ 81 (336)
T d2bs2a2 2 KVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGC 81 (336)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCS
T ss_pred CCEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 95155789989679999999999977998899956899997066423527564243556889999999999987650663
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---------------------CCCCCCCCCCCCCCEEECCCCCHHHHH
Q ss_conf 99999999978299999999859920358999---------------------732235798201314431687279999
Q 006532 153 DDETVRVVCTEGPDRIRELIAIGASFDRGEDG---------------------NLHLAREGGHSHHRIVHAADMTGREIE 211 (641)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g---------------------~~~~~~~~g~~~~r~~~~~~~~g~~~~ 211 (641)
++..++.+++++++.+.|+.++|++|.+...+ .+.....+++..+|.++..+.+|..+.
T Consensus 82 ~~~~v~~~~~~~~~~i~~l~~~g~~f~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~r~~~~~~~~G~~i~ 161 (336)
T d2bs2a2 82 DQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFGGTKKWRTCYTADATGHTML 161 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCCBCCTTCSSCCEECSTTCHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCHHHHH
T ss_conf 29999999874508778999853875635665400112444454332223455011136788520036761488779999
Q ss_pred HHHHHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99999998199948985427888774489997559999999658994999982779996997786798997766673321
Q 006532 212 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDG 291 (641)
Q Consensus 212 ~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g 291 (641)
..|.+.+.+ .|++|++++++++|+.+ ++ +|.|+++.+..+|+.+.|.||.|||||||++++|..++++..++|||
T Consensus 162 ~~l~~~~~~-~gv~i~~~~~~~~li~~-~~---~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg 236 (336)
T d2bs2a2 162 FAVANECLK-LGVSIQDRKEAIALIHQ-DG---KCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTG 236 (336)
T ss_dssp HHHHHHHHH-HTCEEECSEEEEEEEEE-TT---EEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHH
T ss_pred HHHHHHHHH-CCCCCCCEEEEEECCCC-CC---CCCCEEEEECCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 999988874-25554311564300145-54---45650698636785799962768872134343233455654444304
Q ss_pred HHHHHHCC-CEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 68888659-95605333223420003899988987777763124202117996898199885544453222248635899
Q 006532 292 MAMAHRAQ-AVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVA 370 (641)
Q Consensus 292 ~~~a~~aG-a~l~~~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~ 370 (641)
++|++++| +.+.+|+|+|++|
T Consensus 237 ~~~~~~~G~~~l~~~~~iq~~~---------------------------------------------------------- 258 (336)
T d2bs2a2 237 TAIALETGIAQLGNMGGIRTDY---------------------------------------------------------- 258 (336)
T ss_dssp HHHHHTTSSSCEECCCEEECCT----------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCCEEECH----------------------------------------------------------
T ss_conf 5543455555431354256540----------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECC
Q ss_conf 99999999369975999178999658994581099999981999999974474200211473486899973268702325
Q 006532 371 RSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAG 450 (641)
Q Consensus 371 ~~~~~~~~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaG 450 (641)
.++|++||||++|
T Consensus 259 -------------------------------------------------------------------~~~t~~~gl~a~G 271 (336)
T d2bs2a2 259 -------------------------------------------------------------------RGEAKLKGLFSAG 271 (336)
T ss_dssp -------------------------------------------------------------------TSBCSSBTEEECG
T ss_pred -------------------------------------------------------------------HHCCCCCCCEECC
T ss_conf -------------------------------------------------------------------1303577502335
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4467788899820323168999999999899898531
Q 006532 451 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 451 e~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~ 487 (641)
|+.|.+.||+||++++++.++++++.++|+...++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~~~~ 308 (336)
T d2bs2a2 272 EAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA 308 (336)
T ss_dssp GGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHCCCHHHHHCCHHHHHHHHHCC
T ss_conf 5320010102341232051366642166899875168
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-43 Score=297.24 Aligned_cols=284 Identities=43% Similarity=0.634 Sum_probs=243.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 63212689999607999999998866986999715899995101358602104997889999999999565788999999
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 158 (641)
++.+|||||||+|+|||+||+.|++.|+|+||||....+|+|.+++|++++.....|+++.++.++++.+.++++++..+
T Consensus 4 p~~~~DVvVVG~G~AGl~AA~~a~~~g~V~llEK~~~~gG~s~~a~Ggi~a~~~~~D~~~~~~~d~~~~~~~~~~~~~~~ 83 (305)
T d1chua2 4 PEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVE 83 (305)
T ss_dssp CSEECSEEEECCSHHHHHHHHHHTTTSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 76508999999649999999986348998999778999970677185127987898899999987653046864289999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEE
Q ss_conf 999782999999998599203589----9973223579820131443168727999999999998199948985427888
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGE----DGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 234 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~----~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~ 234 (641)
.+++++++.++|+.+++++|.... .+.......++++++|.++.....+..+...+..+..+..++++++++.+++
T Consensus 84 ~~~~~~~e~~~~l~~~g~~f~~~~~~~~~~~~~~~~~gg~s~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (305)
T d1chua2 84 FVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVD 163 (305)
T ss_dssp HHHHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEEE
T ss_pred HHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEECEEEEEE
T ss_conf 99875630056787528865402455565310001358875475785578877303889999988605763131057999
Q ss_pred EEECCCC---CCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCC
Q ss_conf 7744899---9755999999965899499998277999699778679899776667332168888659956053332234
Q 006532 235 LLTTLDG---PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 311 (641)
Q Consensus 235 l~~~~~g---~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~~~~~ 311 (641)
|+++++. ...+|+|+++.+..+++...|.+|.|||||||+++++..++++..+||||+.|++++|+.+.+|+|+|+|
T Consensus 164 Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~mA~~aGa~l~~m~~iq~~ 243 (305)
T d1chua2 164 LIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANCGGVMVD 243 (305)
T ss_dssp EEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHHHHHHTTCCEECSCEEECC
T ss_pred EEEECCCCCCCCCEEEEEEEEECCCCCEEEEEECCEEEEEECCCCCEECCCCCCCEECCCEEECCCCCEEEEECCEEEEC
T ss_conf 99976865456765999999967999489884001577654233310036787841166675323243424742400797
Q ss_pred CEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 20003899988987777763124202117996898199885544453222248635899999999993699759991789
Q 006532 312 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISH 391 (641)
Q Consensus 312 p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ld~~~ 391 (641)
|+
T Consensus 244 ~~------------------------------------------------------------------------------ 245 (305)
T d1chua2 244 DH------------------------------------------------------------------------------ 245 (305)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
T ss_conf 75------------------------------------------------------------------------------
Q ss_pred CCHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99658994581099999981999999974474200211473486899973268702325446778889982032316899
Q 006532 392 KPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEA 471 (641)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a 471 (641)
++|++|||||+||++|.++||++++..|++.+.
T Consensus 246 -----------------------------------------------g~t~~~g~~a~G~~~~~~~~G~~~~~~N~~ger 278 (305)
T d1chua2 246 -----------------------------------------------GRTDVEGLYAIGEVSYTGLHGANRMASNSLLEC 278 (305)
T ss_dssp -----------------------------------------------CBCSSBTEEECGGGEECSSSTTSCCTTHHHHHH
T ss_pred -----------------------------------------------CCCCCCCCEECCCEEEEEECCCCCEEECCCCCC
T ss_conf -----------------------------------------------107798850633088860137573668477511
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999899898531
Q 006532 472 LVFARRAVQPSIDHKK 487 (641)
Q Consensus 472 ~v~G~~Ag~~aa~~~~ 487 (641)
+|+++.|.+.++..+.
T Consensus 279 fv~~~~~~~d~~~~~~ 294 (305)
T d1chua2 279 LVYGWSAAEDITRRMP 294 (305)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHCCCHHHHHHHHHCC
T ss_conf 1236666899997250
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.4e-34 Score=237.29 Aligned_cols=229 Identities=19% Similarity=0.220 Sum_probs=174.4
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHH----CC-CEEEEEECCCCCCCCCCCCCC-EEEC------CCCCCCHHHHHHHHH
Q ss_conf 96321268999960799999999886----69-869997158999951013586-0210------499788999999999
Q 006532 78 GSVKYFDFSVIGSGVAGLCYALEVAK----HG-TVAVITKAEPHESNTNYAQGG-VSAV------LCPSDSVESHMQDTI 145 (641)
Q Consensus 78 ~~~~~~DVlVIGgG~AGl~AA~~aa~----~G-~V~iiek~~~~~g~s~~~~gg-i~~~------~~~~d~~~~~~~~~~ 145 (641)
....++||||||+|+|||+||+.|++ .| +|+||||+...+|++....+. +... ....|+++.++.+++
T Consensus 17 ~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~~~~~~Ds~e~~~~d~~ 96 (356)
T d1jnra2 17 TEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVT 96 (356)
T ss_dssp EEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHH
T ss_pred CEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66876498998988899999999999788676979999678899973598778999742333235676689999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 95657889999999997829999999985992035899973223579820131443168727999999999998199948
Q 006532 146 VAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNIS 225 (641)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~ 225 (641)
..+.+.+++++.+.+..++...++|+.++|++|.+...+........ .. ..... .............. ..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~----~~-~~~~~--~~~~~~~~~~~~~~-~~~~ 168 (356)
T d1jnra2 97 LDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQW----QI-MIHGE--SYKPIIAEAAKMAV-GEEN 168 (356)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSS----CE-EEEET--THHHHHHHHHHHHH-CGGG
T ss_pred HHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCC----EE-CCCCC--CHHHHHHHHHHHHH-CCEE
T ss_conf 86068761889999887411235568760977420133233223331----00-24664--07889999988630-4517
Q ss_pred EECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCC---------CCCCCCCCCCCHHHHHH
Q ss_conf 985427888774489997559999999658994999982779996997786798---------99776667332168888
Q 006532 226 VFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP---------STTNPLVATGDGMAMAH 296 (641)
Q Consensus 226 i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~---------~~~~~~~~~G~g~~~a~ 296 (641)
+++.+.++.++.... ....+.++.+.+.++|+.+.|+||.|||||||++++|. .+++++.+||||+.|+.
T Consensus 169 i~~~~~~~~l~~~~~-~~~~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~ 247 (356)
T d1jnra2 169 IYERVFIFELLKDNN-DPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGL 247 (356)
T ss_dssp EECSEEEEEEEECTT-CTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBSHHHHHHH
T ss_pred EEEEEEEEEEEEECC-CCCCEEEEEEEEEECCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 899999887653024-6652145688774048379840787999178753313577776445644479875770999999
Q ss_pred HCCCEEECCCCCCCCCEEE
Q ss_conf 6599560533322342000
Q 006532 297 RAQAVISNMEFVQFHPTAL 315 (641)
Q Consensus 297 ~aGa~l~~~e~~~~~p~~~ 315 (641)
++|+.+.||+|+||||+.+
T Consensus 248 ~aGa~l~~~~~~q~~p~~~ 266 (356)
T d1jnra2 248 KAGAMLTQAGFWVCGPEDL 266 (356)
T ss_dssp HHTCCEESCEECCCCCTTT
T ss_pred HHHHHHCCCCCEEEECCCC
T ss_conf 8534524787247616645
|
| >d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.94 E-value=1.1e-26 Score=187.45 Aligned_cols=104 Identities=23% Similarity=0.273 Sum_probs=94.3
Q ss_pred HCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 126999999999997217511399999999999999999999752205-7643100099999997999999999999846
Q 006532 518 RRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596 (641)
Q Consensus 518 ~~~~~~~~~l~~~m~~~~~~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R 596 (641)
.++.+++.+||++||+++||+|++++|+.|+.+|++|++++..+...+ +...++++.+++|++||+.+|++++.|||+|
T Consensus 4 e~~~~lr~eLq~iM~~~vGI~R~~~~L~~al~~L~~L~~~~~~i~v~d~s~~~N~~l~ealEL~nml~vA~~i~~aAL~R 83 (198)
T d2bs2a1 4 EDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDR 83 (198)
T ss_dssp BCHHHHHHHHHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHTTBCCSCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999829898988899999999999999998741036631001212688877847999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 6575544335899985588999265
Q 006532 597 HESRGLHYMVDFPHVEENKRLPTII 621 (641)
Q Consensus 597 ~ESRG~h~R~D~p~~d~~~~~~~~~ 621 (641)
+||||+|||+|||++||++|+++++
T Consensus 84 ~ESRGaH~R~DyPerdD~nWlkhTl 108 (198)
T d2bs2a1 84 TESRGAHNREDYPKRDDINWLNRTL 108 (198)
T ss_dssp CSCBTTBCBTTBCSEETTTCCEEEE
T ss_pred HHCCHHHCCCCCCCCCCCCCCCEEE
T ss_conf 5333313337888667645265389
|
| >d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.5e-26 Score=186.61 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=94.3
Q ss_pred HHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0126999999999997217511399999999999999999999752205-764310009999999799999999999984
Q 006532 517 LRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALA 595 (641)
Q Consensus 517 ~~~~~~~~~~l~~~m~~~~~~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~~al~ 595 (641)
+.+|.+++++||++||+++||+|++++|++|+.+|++|++++......+ ....++++.+++|++||+.+|++|+.||++
T Consensus 3 G~~p~~l~~~Lq~~M~~~~Gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~l~~~~el~n~l~~a~~i~~aAl~ 82 (138)
T d1neka1 3 GEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANF 82 (138)
T ss_dssp SBCHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHGGGBCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999981978898789999999999999975200012565223311478888887999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 6657554433589998558899926527
Q 006532 596 RHESRGLHYMVDFPHVEENKRLPTIILP 623 (641)
Q Consensus 596 R~ESRG~h~R~D~p~~d~~~~~~~~~~~ 623 (641)
|+||||+|||.|||++||++|++++++.
T Consensus 83 R~ESRG~H~R~DyP~~dd~~w~~~~~~~ 110 (138)
T d1neka1 83 RTESRGAHSRFDFPDRDDENWLCHSLYL 110 (138)
T ss_dssp CCSCCTTCEESSSCSCCTTTSCSCCEEE
T ss_pred HHHHHHHHHHCCCCCCCCHHHCEEEEEE
T ss_conf 6641002302469987786354167898
|
| >d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=3.6e-26 Score=184.19 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=106.5
Q ss_pred HHHHHCHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 111012699999999999721751139-----999999999999999999975220576431000999999979999999
Q 006532 514 HNILRRTKEVRKELQSIMWRYVGIVRS-----TTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKL 588 (641)
Q Consensus 514 ~~~~~~~~~~~~~l~~~m~~~~~~~r~-----~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~ 588 (641)
.+....|.+++++||++||+|+|++|+ ++.|+.++.+++.+++.+... ....++++++++|++||+.+|++
T Consensus 6 np~~i~P~~~~~~Lq~~M~~y~Givr~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~El~nml~~A~~ 81 (141)
T d1jnra1 6 NPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKL----AARDLHELMRAWELVHRVWTAEA 81 (141)
T ss_dssp CTTCBCHHHHHHHHHHHHHHHTTCGGGTTEECHHHHHHHHHHHHHHHHHHTTB----CCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 87850889999999999996288671224501999987888899999886640----33877999999999999999999
Q ss_pred HHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCEEEC---CCCCCCCCCCCCCCCC
Q ss_conf 999998466575--5443358999855889992652---7985211113455558
Q 006532 589 VVSSALARHESR--GLHYMVDFPHVEENKRLPTIIL---PSLVNCTWSSRQLHKL 638 (641)
Q Consensus 589 ~~~~al~R~ESR--G~h~R~D~p~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~ 638 (641)
+++|||+|+||| |+|||+|||++||++|++++++ .++.++..+|.|++++
T Consensus 82 i~~sAL~R~ESR~~GaH~R~DyPerDD~~w~k~~~~~~~~e~g~~~~~k~P~~~~ 136 (141)
T d1jnra1 82 HVRHMLFRKETRWPGYYYRTDYPELNDEEWKCFVCSKYDAEKDEWTFEKVPYVQV 136 (141)
T ss_dssp HHHHHHHCCSCSSTTTCEETTSCSCCTTTCCEEEEEEEETTTTEEEEEEEECCCC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCEEEEEEEECCCCEEEEEECCCEEC
T ss_conf 9998861233544565334888876716545678999928998089994573121
|
| >d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=8.8e-26 Score=181.69 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=99.6
Q ss_pred HCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 126999999999997217511399999999999999999999752205-7643100099999997999999999999846
Q 006532 518 RRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALAR 596 (641)
Q Consensus 518 ~~~~~~~~~l~~~m~~~~~~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R 596 (641)
.++.+++.+||++||+++||+||+++|+.|+.+|.+|++++..+...+ +...++++.+++|+.||+.+|++++.||++|
T Consensus 4 e~~~~ir~~Lq~~M~~~~Gv~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~l~~~~el~n~l~~a~~i~~aAl~R 83 (134)
T d1kf6a1 4 ENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMAR 83 (134)
T ss_dssp BCHHHHHHHHHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHTTBCCCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999999999838988988899999999999998875421455311000024899999988999999999888703
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCEEEC--CCCCCCCCCCCCCC
Q ss_conf 65755443358--999855889992652--79852111134555
Q 006532 597 HESRGLHYMVD--FPHVEENKRLPTIIL--PSLVNCTWSSRQLH 636 (641)
Q Consensus 597 ~ESRG~h~R~D--~p~~d~~~~~~~~~~--~~~~~~~~~~~~~~ 636 (641)
+||||+|||.| ||++||++|+++++. +++.+...+.+|++
T Consensus 84 ~ESRG~H~R~D~~~p~~dD~~wl~~t~~~~~~~g~~~~~~~pV~ 127 (134)
T d1kf6a1 84 KESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSDVK 127 (134)
T ss_dssp CSCBTTBCBCSTTCSSCCTTTCCEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCEEEEEEECCCCCEEEEECCCC
T ss_conf 56566342356899998845447378999989998888840455
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.92 E-value=2e-24 Score=172.80 Aligned_cols=242 Identities=21% Similarity=0.228 Sum_probs=158.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH-
Q ss_conf 2126899996079999999988669-86999715899995101358602104997889999999999565788999999-
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR- 158 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~- 158 (641)
..+||+|||||+|||+||+.|+++| +|+|+||.+.++.......++.+........+..+. ..++...+
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~---------~~~~~~~~~ 73 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYL---------SQNPHFVKS 73 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEE---------CSCTTSTHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHHH---------CCCHHHHHH
T ss_conf 88729998748999999999997899689996489899745742775523457666712311---------027687777
Q ss_pred HHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEE
Q ss_conf 999-7829999999985992035899973223579820131443168727999999999998199948985427888774
Q 006532 159 VVC-TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 159 ~~~-~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.+. ......++++..+++.+.....+.+. + ......+.+.|.+.+++ .||+++.++.|+++..
T Consensus 74 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------~-~~~a~~i~~~L~~~~~~-~gV~i~~~~~V~~i~~ 137 (253)
T d2gqfa1 74 ALARYTNWDFISLVAEQGITYHEKELGQLF--------------C-DEGAEQIVEMLKSECDK-YGAKILLRSEVSQVER 137 (253)
T ss_dssp HHHHSCHHHHHHHHHHTTCCEEECSTTEEE--------------E-TTCTHHHHHHHHHHHHH-HTCEEECSCCEEEEEE
T ss_pred HHHHHCCCCHHHHHHHCCCCEEEECCCCCC--------------C-CCCHHHHHHHHHHHHHH-CCCCEECCCEEEEEEE
T ss_conf 765323200223444038510330377332--------------0-02205899999999987-6987523866899874
Q ss_pred CCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCEEECC
Q ss_conf 48999755999999965899499998277999699778679899776667332168888659956053332234200038
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 317 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~~~~~p~~~~~ 317 (641)
.+++ ..+..++. .++. .|+|+.||+||||.+ ||.. ..+|+|+.++.+.|..+..
T Consensus 138 ~~~~--~~v~~~~~---~~~~--~~~a~~VIiAtGG~S--~p~~----G~~g~g~~~a~~~~~~i~~------------- 191 (253)
T d2gqfa1 138 IQND--EKVRFVLQ---VNST--QWQCKNLIVATGGLS--MPGL----GATPFGYQIAEQFGIPVIP------------- 191 (253)
T ss_dssp CCSC--SSCCEEEE---ETTE--EEEESEEEECCCCSS--CGGG----TCCSHHHHHHHHTTCCEEE-------------
T ss_pred ECCC--CEEEEEEE---CCCE--EEEECEEEECCCCCC--CCCC----CCCCHHHHHHHHCCCCCCC-------------
T ss_conf 0677--43679994---4987--999697999479634--4546----8995179999862654010-------------
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf 99988987777763124202117996898199885544453222248635899999999993699759991789996589
Q 006532 318 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKI 397 (641)
Q Consensus 318 ~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ld~~~~~~~~~ 397 (641)
|
T Consensus 192 ------~------------------------------------------------------------------------- 192 (253)
T d2gqfa1 192 ------P------------------------------------------------------------------------- 192 (253)
T ss_dssp ------E-------------------------------------------------------------------------
T ss_pred ------C-------------------------------------------------------------------------
T ss_conf ------2-------------------------------------------------------------------------
Q ss_pred HHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEE---ECCC-CCC-CCCCEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9458109999998199999997447420021147348---6899-973-2687023254467788899820323168999
Q 006532 398 LSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVR---AGLQ-GET-NVRGLYVAGEVACTGLHGANRLASNSLLEAL 472 (641)
Q Consensus 398 ~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~---vD~~-~~T-~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~ 472 (641)
...+.|||. ||.+ +++ .+||||.+||+. .+.| .+||.++.+|+
T Consensus 193 ----------------------------~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~l--dv~g--~~gg~n~~~a~ 240 (253)
T d2gqfa1 193 ----------------------------RAVTMGGVDTKVISSKTMESNQVSGLYFIGEVL--DVTG--WLGGYNFQWAW 240 (253)
T ss_dssp ----------------------------EEEEEEEECGGGBCTTTCBBSSSTTEEECGGGB--SCEE--CTTTHHHHHHH
T ss_pred ----------------------------CCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEE--EEEE--ECCCEEHHHHH
T ss_conf ----------------------------002578873021572005440489807962688--8543--10998312467
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999899898
Q 006532 473 VFARRAVQPSID 484 (641)
Q Consensus 473 v~G~~Ag~~aa~ 484 (641)
.+|+.||+++++
T Consensus 241 ~s~~~~~~~~~~ 252 (253)
T d2gqfa1 241 SSAYACALSISR 252 (253)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
T ss_conf 689999999851
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.91 E-value=1.6e-22 Score=160.50 Aligned_cols=247 Identities=22% Similarity=0.302 Sum_probs=161.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH-H
Q ss_conf 126899996079999999988669-86999715899995101358602104997889999999999565788999999-9
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR-V 159 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~-~ 159 (641)
+|||+|||||++|++||+.|+++| +|+||||....++.+....++.+..... ........ . . ..+..... .
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~----~-~-~~~~~~~~~~ 74 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNR-LPLDEIVK----H-I-PGNGRFLYSA 74 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEEC-SCHHHHHH----T-C-TBTGGGGHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCEECCCC-CCCCHHHC----C-C-CCCHHHHHHH
T ss_conf 68999999479999999999978795899958887785425058841201345-56320000----3-4-4311231334
Q ss_pred H-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEEC
Q ss_conf 9-978299999999859920358999732235798201314431687279999999999981999489854278887744
Q 006532 160 V-CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 160 ~-~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
. .......+.++...|+++.....+. .++.......+...|.+.+++ .||+++.+++|++|..+
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~i~~~L~~~~~~-~gv~i~~~~~v~~i~~~ 139 (251)
T d2i0za1 75 FSIFNNEDIITFFENLGVKLKEEDHGR--------------MFPVSNKAQSVVDALLTRLKD-LGVKIRTNTPVETIEYE 139 (251)
T ss_dssp HHHSCHHHHHHHHHHTTCCEEECGGGE--------------EEETTCCHHHHHHHHHHHHHH-TTCEEECSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCC--------------EECCCCCHHHHHHHHHHHHHH-CCCCCCCCCEEEEEEEE
T ss_conf 554446777777875398421234420--------------000354289999999999998-39964578378999997
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCEEECCC
Q ss_conf 89997559999999658994999982779996997786798997766673321688886599560533322342000389
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADE 318 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~~~~~~~~~~~~G~g~~~a~~aGa~l~~~e~~~~~p~~~~~~ 318 (641)
++ .+.++.. .+++ .|+|+.||+|||+.+ ++.+ .++|+|+.++.+.|..+..+ .|..+.
T Consensus 140 -~~---~~~~v~~---~~g~--~i~a~~vI~AtGg~S--~p~~----Gs~g~g~~~a~~~~~~~~~~-----~~~~~~-- 197 (251)
T d2i0za1 140 -NG---QTKAVIL---QTGE--VLETNHVVIAVGGKS--VPQT----GSTGDGYAWAEKAGHTITEL-----FGGGVS-- 197 (251)
T ss_dssp -TT---EEEEEEE---TTCC--EEECSCEEECCCCSS--SGGG----SCSSHHHHHHHHTTCCEEEE-----EEEEEC--
T ss_pred -CC---EEEEEEE---CCCC--EEECCEEEECCCCCC--CCCC----CCCCCCCHHCCCCEEEEEEE-----EECCCC--
T ss_conf -99---8999991---7998--574685999448766--4656----78954210000111345643-----204667--
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
Q ss_conf 99889877777631242021179968981998855444532222486358999999999936997599917899965899
Q 006532 319 GLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKIL 398 (641)
Q Consensus 319 g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ld~~~~~~~~~~ 398 (641)
+. +
T Consensus 198 ----------------------------------~~-------~------------------------------------ 200 (251)
T d2i0za1 198 ----------------------------------VK-------E------------------------------------ 200 (251)
T ss_dssp ----------------------------------GG-------G------------------------------------
T ss_pred ----------------------------------CC-------C------------------------------------
T ss_conf ----------------------------------55-------5------------------------------------
Q ss_pred HHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 45810999999819999999744742002114734868999732687023254467788899820323168999999999
Q 006532 399 SHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 478 (641)
Q Consensus 399 ~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~A 478 (641)
...++...+.+||+|.+||+. ..|+ ..+|..+.+++..|+.|
T Consensus 201 ----------------------------------~~~~~~~~~~~~g~~~~g~~l--~~~~--~~gG~~~~~a~~~G~~a 242 (251)
T d2i0za1 201 ----------------------------------INPKEMSSKFTNGLYFCGEVL--DIHG--YTGGYNITSALVTGRIA 242 (251)
T ss_dssp ----------------------------------EETTTTEESSSBTEEECGGGB--SCBC--CTTTHHHHHHHHHHHHH
T ss_pred ----------------------------------CCCHHHHHHCCCCCEEEEEEE--ECCC--CCCHHHHHHHHHHHHHH
T ss_conf ----------------------------------675247772079927521489--8038--76659999999888999
Q ss_pred HHHHHHHHH
Q ss_conf 899898531
Q 006532 479 VQPSIDHKK 487 (641)
Q Consensus 479 g~~aa~~~~ 487 (641)
++.++++++
T Consensus 243 ~~~~~~~~~ 251 (251)
T d2i0za1 243 GTTAGENAK 251 (251)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHCC
T ss_conf 999998629
|
| >d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4.4e-22 Score=157.65 Aligned_cols=99 Identities=38% Similarity=0.588 Sum_probs=83.6
Q ss_pred HCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 12699999999999721751139999999999999999999975220576431000999999979999999999998466
Q 006532 518 RRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARH 597 (641)
Q Consensus 518 ~~~~~~~~~l~~~m~~~~~~~r~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~~al~R~ 597 (641)
..+..++++||++||+++||+|++++|+.|+.+|+.|++++...... .....+++|++||+.+|++++.||+.|+
T Consensus 12 ~~~~~~~~~L~~~M~~~~GivR~~~~L~~al~~l~~l~~~~~~~~~~-----~~~~~~~~el~nml~~A~~i~~aAl~R~ 86 (111)
T d1chua1 12 VVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAH-----FRVSNNLLELRNLVQVAELIVRCAMMRK 86 (111)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTT-----BCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 30698999999999970882536779999999999999999998720-----4301478999999999999999998674
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 5755443358999855889992652
Q 006532 598 ESRGLHYMVDFPHVEENKRLPTIIL 622 (641)
Q Consensus 598 ESRG~h~R~D~p~~d~~~~~~~~~~ 622 (641)
||||+|||.|||+++++ +.++++.
T Consensus 87 ESRG~HyR~DyPe~~~~-~~~~ii~ 110 (111)
T d1chua1 87 ESRGLHFTLDYPELLTH-SGPSILS 110 (111)
T ss_dssp SCBTTBCBTTCCSCCSS-CCCCEEC
T ss_pred CCCCCEECCCCCCCCCC-CCCCEEC
T ss_conf 55567407889988876-7888309
|
| >d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.3e-21 Score=154.67 Aligned_cols=116 Identities=53% Similarity=0.891 Sum_probs=107.6
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 33322342000389998898777776312420211799689819988554445322224863589999999999369975
Q 006532 305 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKY 384 (641)
Q Consensus 305 ~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (641)
|||+||||+.+..++. ..++++|+++|+|++++|.+|+|||.+|++.++++|||+++++++.++...++..
T Consensus 1 mEfvQFHPT~l~~~~~---------~~~LisEa~RGeGa~L~n~~GerFm~~y~~~~eLapRDvvarai~~e~~~~~~~~ 71 (116)
T d1chua3 1 LEFNQFHPTALYHPQA---------RNFLLTEALRGEGAYLKRPDGTRFMPDFDERGELAPRDIVARAIDHEMKRLGADC 71 (116)
T ss_dssp TTCEEEEEEEECSTTC---------TTCBCCHHHHHTTCEEECTTSCBCGGGTCTTGGGSCHHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEECCEEECCCC---------CCEECCHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 9844476457606998---------7706158662994299847996136477963460077899999999874437880
Q ss_pred EEEECCCCCHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCC
Q ss_conf 999178999658994581099999981999999974474200211
Q 006532 385 VLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYM 429 (641)
Q Consensus 385 v~ld~~~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~ 429 (641)
+|+|+++++.+.+.++||++.+.+.+.|+|+.+++|+|.|++||+
T Consensus 72 v~LD~~~~~~~~i~~rfP~i~~~~~~~GiD~~~~~IpV~PaaHYt 116 (116)
T d1chua3 72 MFLDISHKPADFIRQHFPMIYEKLLGLGIDLTQEPVPIVPAAHYT 116 (116)
T ss_dssp EEEECCSSCSHHHHHHCHHHHHHHHTTTCCTTTSCEEEEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 777602188899872179999999981999878853423687749
|
| >d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=7.1e-20 Score=143.35 Aligned_cols=113 Identities=41% Similarity=0.677 Sum_probs=101.4
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCC------------CCCCCCCCHHHHHHH
Q ss_conf 33322342000389998898777776312420211799689819988554445------------322224863589999
Q 006532 305 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY------------DERAELAPRDVVARS 372 (641)
Q Consensus 305 ~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~------------~~~~~~~~~~~~~~~ 372 (641)
|||+||||+.+... .++++|+++|+|++++|.+|+|||++| ++..++++||+++++
T Consensus 1 MEfiQfHPT~l~~~------------~~LisEa~RGeGa~Lvn~~g~rfm~~~~~~~~~~~~~~~~~~~eLa~RDvvara 68 (132)
T d1kf6a3 1 MEFVQYHPTGLPGS------------GILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQA 68 (132)
T ss_dssp TTCEEEEEEECTTT------------CCBCCTHHHHTTCEEECTTCCCGGGGTTTCSCCCSSCCCTTSGGGSCHHHHHHH
T ss_pred CCCEEEECCCCCCC------------CCEECHHHCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 98355605721799------------825058664785178852774021102657454334445532465821488999
Q ss_pred HHHHHHHCCC------CEEEEECCCCCHHHHHHHCHHHHHHHHH-CCCCCCCCCEEEEEEECCC
Q ss_conf 9999993699------7599917899965899458109999998-1999999974474200211
Q 006532 373 IDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYM 429 (641)
Q Consensus 373 ~~~~~~~~~~------~~v~ld~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~ 429 (641)
++.++.++++ ..+|+|+++++.+.+.++||++.+.+.+ .|+||.++||+|.|++|||
T Consensus 69 i~~~~~~~~~~~~~~~~~v~Ld~~~~~~~~l~~rfp~i~~~~~~~~GiD~~kepIpV~PaaHYT 132 (132)
T d1kf6a3 69 FWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYT 132 (132)
T ss_dssp HHHHHHHTCSBCCTTCCBEEEECGGGCHHHHHHHCHHHHHHHHHHHCCCTTTSCEEEEEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC
T ss_conf 9999998568788847778886105658899999999999999972999778971413687759
|
| >d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.81 E-value=3.2e-20 Score=145.54 Aligned_cols=113 Identities=41% Similarity=0.684 Sum_probs=102.8
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 3332234200038999889877777631242021179968981998855444532-22248635899999999993699-
Q 006532 305 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE- 382 (641)
Q Consensus 305 ~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 382 (641)
|||+||||+.+... .++++|+++|+|++++|.+|+|||.+|++ .+++++||+++++++.++.++++
T Consensus 1 MEfvQfHPT~l~~~------------~~LitEavRGeGa~L~n~~G~rFm~~~~p~~~ela~RDvvarai~~e~~~grg~ 68 (121)
T d2bs2a3 1 MEAVQFHPTPLFPS------------GILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGV 68 (121)
T ss_dssp TTCEEEESCBBTTT------------CCBCCTHHHHHTCEEECTTCCBCHHHHCTTTGGGSCHHHHHHHHHHHHHTTTSB
T ss_pred CCCEEEECCCCCCC------------CCEECHHHCCCCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 98552578844799------------853302011685389805896201103862112211689999999999844787
Q ss_pred -----CEEEEECCCCCHHHHHHHCHHHHHHHHHC-CCCCCCCCEEEEEEECCC
Q ss_conf -----75999178999658994581099999981-999999974474200211
Q 006532 383 -----KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYM 429 (641)
Q Consensus 383 -----~~v~ld~~~~~~~~~~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~~ 429 (641)
..||||+++++.+.+.++||++.+.+.++ |+|+.++||+|.|++||+
T Consensus 69 ~~~~~~~V~LD~~~i~~e~l~~rfp~i~~~~~~~~GiD~~k~pIpV~PaaHYt 121 (121)
T d2bs2a3 69 QSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYS 121 (121)
T ss_dssp CCTTCCBEEEECGGGCHHHHHHHSHHHHHHHHHTSCCCTTTSCEEECCEEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC
T ss_conf 77898736777443877888664378999999966988778960303676759
|
| >d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.4e-19 Score=139.87 Aligned_cols=112 Identities=42% Similarity=0.653 Sum_probs=102.3
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 333223420003899988987777763124202117996898199885544453222-248635899999999993699-
Q 006532 305 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKKRNE- 382 (641)
Q Consensus 305 ~e~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 382 (641)
|||+||||+.+... +++++|+++|+|++++|.+|+|||.+|++.. ++++||+++++++.++.++++
T Consensus 1 mEfvQFHPT~l~~~------------g~LisEavRGeGa~L~n~~gerFm~~~~p~~~eLapRDvvarai~~e~~~g~g~ 68 (120)
T d1neka3 1 MEMWQFHPTGIAGA------------GVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGC 68 (120)
T ss_dssp TTCEEEEEEEETTT------------CCCCCTHHHHHTCEEECTTSCCHHHHHSTTTGGGCCHHHHHHHHHHHHHTTCSB
T ss_pred CCCEEEECCEECCC------------CEECCHHHCCCCCEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 97341424850789------------805698781787877783022355501854345532799999999999957898
Q ss_pred -----CEEEEECCCCCHHHHHHHCHHHHHHHHHC-CCCCCCCCEEEEEEECC
Q ss_conf -----75999178999658994581099999981-99999997447420021
Q 006532 383 -----KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHY 428 (641)
Q Consensus 383 -----~~v~ld~~~~~~~~~~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~ 428 (641)
..+++|+++++.+.+.++||++.+.+.++ |+|+.+++|+|.|++||
T Consensus 69 ~~~~~~~v~ld~~~~~~~~i~~rfP~i~~~~~~~~giD~~~epIpV~PaaHY 120 (120)
T d1neka3 69 DGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 120 (120)
T ss_dssp CSSSCSBEEEECTTSCHHHHHHHCHHHHHHHHHHHCCCTTTSCEEEEEEEEE
T ss_pred CCCCCCCEEEEHHCCCHHHHHHHCHHHHHHHHHHCCCCCCCCCCEECCCCCC
T ss_conf 8875662131110069899998877999999996498877896200278789
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=8.5e-17 Score=123.35 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=79.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 2126899996079999999988669-869997158999951013586021049978899999999995657889999999
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 159 (641)
.+|||+||||||||++||+.|++.| +|+|+|+....+.......||.+...+ +.+.....
T Consensus 2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g-------------------~~~~k~l~ 62 (235)
T d1h6va1 2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVG-------------------CIPKKLMH 62 (235)
T ss_dssp CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHS-------------------HHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-------------------CCCHHHHH
T ss_conf 64899998979999999999997899699993457777544455453211333-------------------44123321
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECC
Q ss_conf 99782999999998599203589997322357982013144316872799999999999819994898542788877448
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
..............+|+.+.......+. .........-..+...+...+.+ .+|+++.+... ..+
T Consensus 63 ~~~~~~~~~~~~~~~gi~~~~~~~~d~~----------~~~~~~~~~i~~l~~g~~~~l~~-~~V~vi~G~~~---~~~- 127 (235)
T d1h6va1 63 QAALLGQALKDSRNYGWKLEDTVKHDWE----------KMTESVQNHIGSLNWGYRVALRE-KKVVYENAYGK---FIG- 127 (235)
T ss_dssp HHHHHHHHHHHTTTTTBCCCSCCCBCHH----------HHHHHHHHHHHHHHHHHHHHHHH-HTCEEECCEEE---EEE-
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECHH----------HHHHEEEEEEEECCCHHHHHHHC-CCCEEEEEEEE---ECC-
T ss_conf 3344556766401023443331244002----------21100321453031035666643-68449976882---035-
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
Q ss_conf 9997559999999658994999982779996997786
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+ .+ .. ....++...+.++.+++++|...+
T Consensus 128 ~~---~~---~v-~~~~~~~~~i~a~~ivi~~G~~p~ 157 (235)
T d1h6va1 128 PH---KI---MA-TNNKGKEKVYSAERFLIATGERPR 157 (235)
T ss_dssp TT---EE---EE-ECTTSCEEEEEEEEEEECCCEEEC
T ss_pred CC---CE---EC-CCCCCCCCCCCCCCCEEECCCCCE
T ss_conf 42---00---01-356664210233211032388850
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.64 E-value=2.6e-15 Score=113.72 Aligned_cols=179 Identities=13% Similarity=0.051 Sum_probs=95.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCC-CCH-HHHHHHHHHHCCCCCCHHHH
Q ss_conf 2126899996079999999988669-86999715899995101358602104997-889-99999999956578899999
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS-DSV-ESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~-d~~-~~~~~~~~~~g~~~~~~~~~ 157 (641)
.+|||+|||||++|+++|++|+++| +|+|||++...+|+|..+.|.+....... ... ..........-. . +.
T Consensus 3 ~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~~gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~----~-l~ 77 (276)
T d1ryia1 3 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYK----G-LG 77 (276)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTT----T-HH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC----C-CC
T ss_conf 518799999689999999999988995899958999887020034632646554545432012232222011----2-22
Q ss_pred HHHH-----------------HHHHHHHHHHHHC-CCCCCCCCCC-CC-CCCCCCCCCCCCEEE---CCCCCHHHHHHHH
Q ss_conf 9999-----------------7829999999985-9920358999-73-223579820131443---1687279999999
Q 006532 158 RVVC-----------------TEGPDRIRELIAI-GASFDRGEDG-NL-HLAREGGHSHHRIVH---AADMTGREIERAL 214 (641)
Q Consensus 158 ~~~~-----------------~~~~~~i~~l~~~-Gv~~~~~~~g-~~-~~~~~~g~~~~r~~~---~~~~~g~~~~~~l 214 (641)
.... ........++... +.......+. .. ...+..........+ ........+...|
T Consensus 78 ~~~~~~~g~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~g~i~~~~~~~~l 157 (276)
T d1ryia1 78 EELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAY 157 (276)
T ss_dssp HHHHHHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCHHHH
T ss_conf 22221002222212332103431011233222111121100234422112476545552589985020021011110278
Q ss_pred HHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
Q ss_conf 99998199948985427888774489997559999999658994999982779996997786
Q 006532 215 LEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 215 ~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+.+.+ .|++|++++.|++|..++ .+.+|.. .+| +|.|+.||+|+|++++
T Consensus 158 ~~~~~~-~Gv~i~~~~~V~~i~~~~-----~~~~V~t---~~g---~i~a~~vV~AaG~~s~ 207 (276)
T d1ryia1 158 VKAAKM-LGAEIFEHTPVLHVERDG-----EALFIKT---PSG---DVWANHVVVASGVWSG 207 (276)
T ss_dssp HHHHHH-TTCEEETTCCCCEEECSS-----SSEEEEE---TTE---EEEEEEEEECCGGGTH
T ss_pred HHHHHH-CCCEEECCEEEEEEEEEC-----CEEEEEC---CCE---EEECCEEEECCCCCHH
T ss_conf 999987-598786562787677606-----2578755---982---7996989999884578
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.63 E-value=2.8e-15 Score=113.46 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=35.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 2126899996079999999988669-869997158999951
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
.+|||+|||||+||+.||+.+++.| +|+|+|+....+|..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~ 42 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTC 42 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEE
T ss_conf 82899999978999999999998899389997328878756
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.61 E-value=8.4e-15 Score=110.41 Aligned_cols=159 Identities=21% Similarity=0.239 Sum_probs=78.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 2126899996079999999988669--86999715899995101358602104997889999999999565788999999
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 158 (641)
++|||+|||+||||++||+.|++.| +|+|+|+....+......-||.+...+ |.+....
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~g-------------------cip~K~l 62 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVG-------------------CVPKKLM 62 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHS-------------------HHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC-------------------CHHHHHC
T ss_conf 751989989788999999999986998799998743678645453244110110-------------------0001000
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEEC
Q ss_conf 99978299999999859920358999732235798201314431687279999999999981999489854278887744
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
....+..+.+..+..+|+.+....- .+. +.......+..-..+...+...+.+..+++++.+..... +
T Consensus 63 ~~~a~~~~~~~~~~~~Gi~~~~~~v-~~d--------~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~---~ 130 (240)
T d1feca1 63 VTGANYMDTIRESAGFGWELDRESV-RPN--------WKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQ---D 130 (240)
T ss_dssp HHHHHHHHHHHHGGGGTEECCGGGC-EEC--------HHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEE---E
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCC--------HHHHHHHHHCEEECCCCCEEEEECCCCCEEEEEEECCCC---C
T ss_conf 1123221000110002334565432-347--------899988755199311353043302477479998564334---4
Q ss_pred CCCCCCEEEEEE-EEECCCCEEEEEECCEEEECCCCCC
Q ss_conf 899975599999-9965899499998277999699778
Q 006532 239 LDGPDAVCHGVD-TLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 239 ~~g~~~~v~Gv~-~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.. .. ... ......+....+.++.|++++|...
T Consensus 131 ~~----~~-~~~~~~~~~~~~~e~i~~~~i~ia~G~~p 163 (240)
T d1feca1 131 NH----TV-LVRESADPNSAVLETLDTEYILLATGSWP 163 (240)
T ss_dssp TT----EE-EEESSSSTTSCEEEEEEEEEEEECCCEEE
T ss_pred CC----CC-CCCCCCCCCCCCEEEEECCEEEEECCCCE
T ss_conf 32----11-11112223443248982435999508802
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.59 E-value=1e-14 Score=109.92 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=99.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC--CCCCCCCCCCEEECCCCCCCHHHHHHHHHH----HCC-----
Q ss_conf 26899996079999999988669--86999715899--995101358602104997889999999999----565-----
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH--ESNTNYAQGGVSAVLCPSDSVESHMQDTIV----AGA----- 149 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~~~--~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~----~g~----- 149 (641)
-||+|||||++|+++|+.|+++| +|+||||+... +|+|..+.|.+... ........+...... ...
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~~~~gas~~~~G~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQT-NPSKTMASFAKYTVEKLLSLTEDGVSC 80 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCC-CSCHHHHHHHHHHHHHHHHCEETTEES
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCEECCC-CCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9899989489999999999976998189996888898863110026545569-998899999999899997644216532
Q ss_pred -------CC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCC-CCCCCCCCEEEC---CCCCHHHHHHHHHH
Q ss_conf -------78-899999999978299999999859920358999732-235-798201314431---68727999999999
Q 006532 150 -------YL-CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH-LAR-EGGHSHHRIVHA---ADMTGREIERALLE 216 (641)
Q Consensus 150 -------~~-~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~-~~~-~~g~~~~r~~~~---~~~~g~~~~~~l~~ 216 (641)
.. .+.+. ..........+...+.++......... ... ..........+. .......+...|.+
T Consensus 81 ~~~~g~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~l~~~l~~ 156 (305)
T d1pj5a2 81 FNQVGGLEVATTETR----LADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIK 156 (305)
T ss_dssp EECCCEEEEESSHHH----HHHHHHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHH----HHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH
T ss_conf 102212333211466----7999999998774224321133677654246544556444200146654202344556776
Q ss_pred HHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
Q ss_conf 998199948985427888774489997559999999658994999982779996997786
Q 006532 217 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 217 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+.+ .|++++++++|++|..+ ++ ++.+|.. ..| +|+|+.||+|+|+++.
T Consensus 157 ~a~~-~gv~i~~~~~V~~i~~~-~~---~v~~V~T---~~g---~i~a~~VV~aaG~~s~ 205 (305)
T d1pj5a2 157 RTES-AGVTYRGSTTVTGIEQS-GG---RVTGVQT---ADG---VIPADIVVSCAGFWGA 205 (305)
T ss_dssp HHHH-TTCEEECSCCEEEEEEE-TT---EEEEEEE---TTE---EEECSEEEECCGGGHH
T ss_pred HHHC-CCCCCCCCCEEEEEEEE-CC---EEEEEEC---CCE---EEECCEEEEECCHHHH
T ss_conf 5311-32334577458888985-99---7899853---551---6999999994216189
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.59 E-value=1.1e-14 Score=109.72 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=38.6
Q ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 899632126899996079999999988669-869997158999951
Q 006532 76 RDGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 76 ~~~~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
+....++|||+|||||++|+.||+.+++.| +|+++|+....+|.+
T Consensus 36 ~~~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c 81 (261)
T d1mo9a1 36 DENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC 81 (261)
T ss_dssp CTTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 8898752899998989899999999997799699996468646650
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.57 E-value=2.7e-14 Score=107.10 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 2126899996079999999988669-8699971589
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~ 115 (641)
.+|||+|||||+||+.||+.|++.| +|+|+|+...
T Consensus 2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~ 37 (223)
T d1ebda1 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL 37 (223)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 618999989789999999999988997999956887
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=6.9e-14 Score=104.47 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC----CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 26899996079999999988669----86999715899995101358602104997889999999999565788999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G----~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 158 (641)
++|+||||||||++||+.+++.| +|+|+|+... +| ++.+.|.+ |....
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~-GG-~cln~Gci--------------------------PsK~l 53 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI-GG-AAVLDDCV--------------------------PSKTF 53 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT-TH-HHHHTSHH--------------------------HHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCC-CC-EEECCCCC--------------------------CCEEE
T ss_conf 6899988888999999999975989888999945887-86-34033640--------------------------66888
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEEC
Q ss_conf 99978299999999859920358999732235798201314431687279999999999981999489854278887744
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
....+..+.+.....+|+.+.... ..+. +.......+..-......+...+.. .+|+++.+.... ...
T Consensus 54 l~~a~~~~~~~~~~~~G~~i~~~~-~~~d--------~~~~~~~~~~v~~~~~~~~~~~~~~-~gV~vi~G~~~~--~~~ 121 (233)
T d1xdia1 54 IASTGLRTELRRAPHLGFHIDFDD-AKIS--------LPQIHARVKTLAAAQSADITAQLLS-MGVQVIAGRGEL--IDS 121 (233)
T ss_dssp HHHHHHHHHHTTTTTTTBC-------CBC--------HHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEESEEEE--CCS
T ss_pred EEECCHHHHHHHHHHCCCCCCCCC-CEEE--------EEEECCCCCEEEEEEECCEEHHHCC-CCEEEEECCCCC--CCC
T ss_conf 860312444434666087411367-3055--------4210133202565310100001113-330699775003--566
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCC
Q ss_conf 8999755999999965899499998277999699778
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.... ....+.. ...+|+...+.|+.||+|||...
T Consensus 122 ~~~~--~~~~v~v-~~~dg~~~~i~ad~viiAtG~~p 155 (233)
T d1xdia1 122 TPGL--ARHRIKA-TAADGSTSEHEADVVLVATGASP 155 (233)
T ss_dssp SSCC--SSEEEEE-ECTTSCEEEEEESEEEECCCEEE
T ss_pred CCCC--CCCEEEE-EECCCCEEEEECCEEEEECCCCC
T ss_conf 5422--3305899-95688356663011564067443
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.9e-14 Score=108.14 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=32.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 2126899996079999999988669-8699971589
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~ 115 (641)
.+|||+|||||+||+.||+.|++.| +|+|||+...
T Consensus 2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~ 37 (221)
T d3grsa1 2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKL 37 (221)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 864989989799999999999977997999963688
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.55 E-value=4.4e-14 Score=105.73 Aligned_cols=179 Identities=12% Similarity=0.134 Sum_probs=94.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCC-CCCEE-ECCCCCCCHHHH-------HHHHHHHCCC
Q ss_conf 2126899996079999999988669-869997158999951013-58602-104997889999-------9999995657
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYA-QGGVS-AVLCPSDSVESH-------MQDTIVAGAY 150 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~-~ggi~-~~~~~~d~~~~~-------~~~~~~~g~~ 150 (641)
.+|||+|||||++|+++|++|+++| +|+|||+...+++.+... .+++. ...........+ +.+.......
T Consensus 2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~ 81 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH 81 (281)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEECCHHHHHH
T ss_conf 71899999947999999999998899589996789887546567776666011477501210002321000000012101
Q ss_pred -C----------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCC-CCCCCCCEEE-CC--CCCHHHHHHHH
Q ss_conf -8----------8999999999782999999998599203589997322-357-9820131443-16--87279999999
Q 006532 151 -L----------CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHL-ARE-GGHSHHRIVH-AA--DMTGREIERAL 214 (641)
Q Consensus 151 -~----------~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~-~~~-~g~~~~r~~~-~~--~~~g~~~~~~l 214 (641)
. .+.+. .......+....+|.++.......... .+. ........++ .. ......++..|
T Consensus 82 ~~~~~~g~l~~~~~~~~-----~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l 156 (281)
T d2gf3a1 82 KIFTKTGVLVFGPKGES-----AFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAY 156 (281)
T ss_dssp CCEECCCEEEEEETTCC-----HHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHH
T ss_pred CCCCCCCEEEEEECCHH-----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 02223552554300025-----6665544321023320200026766544301345532000000111222222222222
Q ss_pred HHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
Q ss_conf 99998199948985427888774489997559999999658994999982779996997786
Q 006532 215 LEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 215 ~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
.+.+.+ .|++++++++|.++..++++ + .|. +.+| .|.|+.||+|+|+++.
T Consensus 157 ~~~a~~-~Gv~i~~~~~V~~i~~~~~~----v-~V~---t~~g---~i~a~~VViAaG~~s~ 206 (281)
T d2gf3a1 157 RELAEA-RGAKVLTHTRVEDFDISPDS----V-KIE---TANG---SYTADKLIVSMGAWNS 206 (281)
T ss_dssp HHHHHH-TTCEEECSCCEEEEEECSSC----E-EEE---ETTE---EEEEEEEEECCGGGHH
T ss_pred CCCCCC-CCCCCCCCCEEEEEEEECCE----E-EEE---ECCC---EEECCEEEECCCCCCH
T ss_conf 211111-11233478579999997999----9-999---8991---9993989999987433
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.55 E-value=8.4e-14 Score=103.91 Aligned_cols=40 Identities=38% Similarity=0.542 Sum_probs=35.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 2126899996079999999988669-869997158999951
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
..|||+||||||||++||+.|++.| +|+|+|+....++..
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~ 42 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 83899998968899999999998799099996146877665
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.53 E-value=3.6e-14 Score=106.28 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=35.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCC
Q ss_conf 32126899996079999999988669-86999715899995
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~ 119 (641)
+.+|||+|||+|||||+||+.|++.| +|+|+|+....+|.
T Consensus 4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~ 44 (229)
T d1ojta1 4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV 44 (229)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE
T ss_conf 77658899896999999999999889909999645887876
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.47 E-value=2.5e-12 Score=94.39 Aligned_cols=36 Identities=44% Similarity=0.505 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC
Q ss_conf 2126899996079999999988669--86999715899
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 116 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~~~ 116 (641)
+.|||+|||+||||++||+.|++.| +|+|+|+....
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~ 39 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH 39 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 71698999988799999999997699979999744356
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.46 E-value=1.7e-13 Score=101.90 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=33.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 632126899996079999999988669-8699971589
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~ 115 (641)
.+.+|||+|||||+||+.||+.|++.| +|+|+|++..
T Consensus 2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~ 39 (220)
T d1lvla1 2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQAL 39 (220)
T ss_dssp CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCT
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 75416999989788999999999987994899951788
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=3.1e-12 Score=93.73 Aligned_cols=123 Identities=17% Similarity=0.103 Sum_probs=76.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 126899996079999999988669-8699971589999510135860210499788999999999956578899999999
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (641)
.|||+|||||+||+.||+.+++.| +|+||++.....|..+.+.... .+... .+
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~g----g~~kg------------------~l---- 55 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPP----FPPGS------------------LL---- 55 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSC----CCTTC------------------HH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCCCC----CCCCC------------------CE----
T ss_conf 87689999688999999999988994799971351104555577556----67776------------------25----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCC
Q ss_conf 97829999999985992035899973223579820131443168727999999999998199948985427888774489
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
. .+.+ ..| .....+...+.+.+.+..++.++.. +|++++.+ +
T Consensus 56 ~----------reid------~kG--------------------~av~a~raQ~k~~l~~~~nL~i~q~-~V~dli~e-~ 97 (230)
T d2cula1 56 E----------RAYD------PKD--------------------ERVWAFHARAKYLLEGLRPLHLFQA-TATGLLLE-G 97 (230)
T ss_dssp H----------HHCC------TTC--------------------CCHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEE-T
T ss_pred E----------EEEE------CCC--------------------HHHHHHHHHHHHHHHHHCCHHHHHC-CCEEEEEC-C
T ss_conf 6----------6640------232--------------------3445299999987765127788743-31026751-6
Q ss_pred CCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
Q ss_conf 997559999999658994999982779996997786
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+ ++.||+. .+|. .|.|++||||||.|-+
T Consensus 98 ~---~v~gV~t---~~G~--~~~AkaVILtTGTFL~ 125 (230)
T d2cula1 98 N---RVVGVRT---WEGP--PARGEKVVLAVGSFLG 125 (230)
T ss_dssp T---EEEEEEE---TTSC--CEECSEEEECCTTCSS
T ss_pred C---CEEEEEE---CCCC--EEEEEEEEECCCCCEE
T ss_conf 6---3035772---3464--9997089986685140
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=99.42 E-value=2.8e-11 Score=87.52 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=47.9
Q ss_pred HHHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCE-EEECCCCCCC
Q ss_conf 99999819994898542788877448999755999999965899499998277-9996997786
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-TLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~-VVlAtGg~~~ 276 (641)
....+.++.+++++.++.|+.|+.++++...+++||.+.+ .+|+.++++|+. ||||+|++..
T Consensus 230 ~~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~-~~g~~~~v~A~keVILsAGAi~S 292 (385)
T d1cf3a1 230 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT-HKGNTHNVYAKHEVLLAAGSAVS 292 (385)
T ss_dssp HTGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEE-ETTEEEEEEEEEEEEECSCTTTH
T ss_pred HCCCHHCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEC-CCCCEEEEEECCEEEECCCHHHC
T ss_conf 3373210774333377368888871899654799999986-89978999968889986853549
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=2.1e-12 Score=94.80 Aligned_cols=40 Identities=30% Similarity=0.409 Sum_probs=35.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCC
Q ss_conf 32126899996079999999988669-86999715899995
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~ 119 (641)
.+.|||+|||||+||++||+.|++.| +|+|+|+....+|.
T Consensus 3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~ 43 (233)
T d1v59a1 3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT 43 (233)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEE
T ss_conf 86247999999889999999999889968999715871407
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=99.33 E-value=1.1e-10 Score=83.79 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=44.0
Q ss_pred HHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCE-EEECCCCCCC
Q ss_conf 9819994898542788877448999755999999965899499998277-9996997786
Q 006532 218 VVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV-TLLASGGAGH 276 (641)
Q Consensus 218 ~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~-VVlAtGg~~~ 276 (641)
...+.+++++.++.|++|+.++++...+++||.+.+. ++..++++|+. ||||+|++..
T Consensus 240 ~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~-~g~~~~v~A~keVILaAGai~S 298 (391)
T d1gpea1 240 NYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTN-KAVNFDVFAKHEVLLAAGSAIS 298 (391)
T ss_dssp TTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEE-TTEEEEEEEEEEEEECSCTTTH
T ss_pred CCCCHHHHHHCCCEEEEEEEECCCCCCEEEEEEEECC-CCEEEEEEECCEEEEECCHHCC
T ss_conf 3220134433053256886507888746886588338-9727899848879992612046
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=99.31 E-value=7.6e-12 Score=91.21 Aligned_cols=61 Identities=8% Similarity=0.166 Sum_probs=40.4
Q ss_pred HHHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCC--CEEEEEECCEEEECCCCCCC
Q ss_conf 9999981999489854278887744899975599999996589--94999982779996997786
Q 006532 214 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVET--QEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 214 l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~--g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++..+.+..+++|+.++.|++|+.++++ ...+.+...+... .+..+++||.||||+|+++.
T Consensus 228 ~L~~a~~~g~~~i~t~~~V~~I~~~~~~--~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~T 290 (370)
T d3coxa1 228 YLAQAAATGKLTITTLHRVTKVAPATGS--GYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGT 290 (370)
T ss_dssp HHHHHHHTTCEEEECSEEEEEEEECSSS--SEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHH
T ss_pred HHHHHHHCCCCEEEECCCEEEEEECCCC--EEEEEEEEECCCCCEEEEEEEECCEEEEEECHHHH
T ss_conf 7899985898489736738999984997--18999999588662322899989999995078885
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=99.30 E-value=1.1e-11 Score=90.21 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=42.8
Q ss_pred HHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECC--CCEEEEEECCEEEECCCCCCC
Q ss_conf 99998199948985427888774489997559999999658--994999982779996997786
Q 006532 215 LEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE--TQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 215 ~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~--~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
+..+.+..+++|+.++.|+.|..++++ ...+++...+.. .++..+|+||.||||+|+++.
T Consensus 225 l~~a~~~gn~~i~~~t~V~~I~~~~~g--~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~T 286 (367)
T d1n4wa1 225 LAAALGTGKVTIQTLHQVKTIRQTKDG--GYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGS 286 (367)
T ss_dssp HHHHHHTTSEEEEESEEEEEEEECTTS--SEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHH
T ss_pred HHHHHHCCCEEEECCCEEEEEEECCCC--CEEEEEEEECCCCCCEEEEEEECCEEEEECCHHCC
T ss_conf 378975898099878789998985899--88999999777775204999864899990652307
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.28 E-value=4.1e-10 Score=79.94 Aligned_cols=118 Identities=12% Similarity=0.180 Sum_probs=71.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 632126899996079999999988669-8699971589999510135860210499788999999999956578899999
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 157 (641)
.++.+||+|||||++|+.||+.|++.| +|+|+|+........ .+.+.
T Consensus 2 ~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~---~~~~~----------------------------- 49 (192)
T d1vdca1 2 ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAP---GGQLT----------------------------- 49 (192)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCT---TCGGG-----------------------------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CCCCC-----------------------------
T ss_conf 8666469999988999999999998499389999400123432---21112-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEE
Q ss_conf 99997829999999985992035899973223579820131443168727999999999998199948985427888774
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
....+.. ..+ ++....+..+...+.+++.+ .|+++... .|..+..
T Consensus 50 ----------------~~~~~~~-~~~----------------~~~~~~~~el~~~~~~q~~~-~g~~i~~~-~V~~~~~ 94 (192)
T d1vdca1 50 ----------------TTTDVEN-FPG----------------FPEGILGVELTDKFRKQSER-FGTTIFTE-TVTKVDF 94 (192)
T ss_dssp ----------------GCSEECC-STT----------------CTTCEEHHHHHHHHHHHHHH-TTCEEECC-CCCEEEC
T ss_pred ----------------CCHHHHC-CCC----------------CCCCCCCHHHHHHHHHHHHH-HCCEEEEE-EEEECCC
T ss_conf ----------------3200101-235----------------43344416788889988876-23202311-6986024
Q ss_pred CCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCC
Q ss_conf 4899975599999996589949999827799969977
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
.+++ .... ... ..+.++.+++++|..
T Consensus 95 ~~~~-------~~v~-~~~---~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 95 SSKP-------FKLF-TDS---KAILADAVILAIGAV 120 (192)
T ss_dssp SSSS-------EEEE-CSS---EEEEEEEEEECCCEE
T ss_pred CCCC-------EEEC-CCC---EEEEEEEEEEEEEEE
T ss_conf 5576-------7750-433---023333577886102
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=4.1e-10 Score=79.96 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=37.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 32126899996079999999988669-869997158999951
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
+.+|||+|||+|++||+||..|+++| +|+|+|+....||.+
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~ 44 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA 44 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGG
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCE
T ss_conf 886788998969899999999998899899994899887523
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=99.21 E-value=6.7e-10 Score=78.60 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=85.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-C-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 3212689999607999999998866-9-8699971589999510135860210499788999999999956578899999
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~-G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 157 (641)
..++||+|||+|+|||+||+.|+++ | +|+|+|+.+..+|.... .+.. ..... ...
T Consensus 31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~-~g~~-~~~~~------------------~~~--- 87 (278)
T d1rp0a1 31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL-GGQL-FSAMI------------------VRK--- 87 (278)
T ss_dssp HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC-CSTT-CCCEE------------------EET---
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEE-CCEE-CCHHH------------------HHH---
T ss_conf 468998998978899999999997069869999567878873463-5797-68888------------------755---
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEE
Q ss_conf 99997829999999985992035899973223579820131443168727999999999998199948985427888774
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.....+.++++.+....... ........+...+.+.+.. .++.+..++.+.+++.
T Consensus 88 --------~~~~~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 142 (278)
T d1rp0a1 88 --------PAHLFLDEIGVAYDEQDTYV----------------VVKHAALFTSTIMSKLLAR-PNVKLFNAVAAEDLIV 142 (278)
T ss_dssp --------TTHHHHHHHTCCCEECSSEE----------------EESCHHHHHHHHHHHHHTS-TTEEEEETEEEEEEEE
T ss_pred --------HHHHHHHHCCCCEECCCCCC----------------EECCCHHHHHHHHHHHHHH-CCCEEEECCCCEEEEE
T ss_conf --------58999997698303378662----------------3345689999999999986-7998994773100243
Q ss_pred CCCCCCCEEEEEEEEEC---------CCCEEEEEECCEEEECCCCCC
Q ss_conf 48999755999999965---------899499998277999699778
Q 006532 238 TLDGPDAVCHGVDTLNV---------ETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~---------~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
+ ++ ++.|+..... .......+.++.||.|+|..+
T Consensus 143 ~-~~---~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~ 185 (278)
T d1rp0a1 143 K-GN---RVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 185 (278)
T ss_dssp E-TT---EEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred C-CC---EEEEEEECCCEEEEEECCCCCCCCEEECCCEEEECCCCCC
T ss_conf 0-88---3789993361245420244444530522666997868875
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.20 E-value=3.3e-11 Score=87.09 Aligned_cols=41 Identities=34% Similarity=0.559 Sum_probs=34.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCC
Q ss_conf 26899996079999999988669-86999715899995101358
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 125 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~g 125 (641)
|||+|||||+||+.||+.|++.| +|+|+|+... |+++.+.|
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~--GGtc~n~g 43 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL--GGTCVNVG 43 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSST--THHHHHTS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--CCEEEEEC
T ss_conf 6299989788999999999978895999963899--97687567
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.20 E-value=1.3e-10 Score=83.30 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=34.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 26899996079999999988669-869997158999951
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
-||+|||||++||+||+.|+++| +|+|+|+.+..||..
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 39 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAV 39 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
T ss_conf 949999977899999999986899899992699887638
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=99.19 E-value=1.5e-11 Score=89.35 Aligned_cols=52 Identities=8% Similarity=0.120 Sum_probs=45.3
Q ss_pred CCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCC
Q ss_conf 994898542788877448999755999999965899499998277999699778
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
.|++++.++.|+.|+.++++ .+++||.+.+..+|+.+.+.|+.||+|.|++.
T Consensus 231 ~~~~l~~~a~V~~i~~~~~~--~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~ 282 (379)
T d2f5va1 231 ERFNLFPAVACERVVRNALN--SEIESLHIHDLISGDRFEIKADVYVLTAGAVH 282 (379)
T ss_dssp EEEEEECSEEEEEEEECTTS--SCEEEEEEEETTTCCEEEEEEEEEEECSCHHH
T ss_pred CCCEEECCCEEEEEEEECCC--CEEEEEEEEECCCCEEEEEECEEEEECCCCCC
T ss_conf 99999569999999981899--98999999979999799996508996557668
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=99.18 E-value=9.4e-11 Score=84.12 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=45.7
Q ss_pred HHHHHHHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECC--CCEEEEEEC-CEEEECCCCCCC
Q ss_conf 9999999998199948985427888774489997559999999658--994999982-779996997786
Q 006532 210 IERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE--TQEVVRFIS-KVTLLASGGAGH 276 (641)
Q Consensus 210 ~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~--~g~~~~i~A-k~VVlAtGg~~~ 276 (641)
...+++..+.++.+++|+.++.|++|+.+ ++ +++||.+.+.. .+....+.| +.||||+|++..
T Consensus 192 ~~~~yl~~a~~r~nl~i~t~~~V~rI~~d-~~---ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~S 257 (360)
T d1kdga1 192 PVATYLQTALARPNFTFKTNVMVSNVVRN-GS---QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGT 257 (360)
T ss_dssp HHHTHHHHHHTCTTEEEECSCCEEEEEEE-TT---EEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCCCEEEEEEEE-CC---EEEEEEEEECCCCCCEEEEEEECCEEEEECHHHHC
T ss_conf 22113566642663001048679999972-99---89999998523676248999979999993656747
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=1.1e-10 Score=83.74 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=42.8
Q ss_pred EEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4868999732687023254467788899820323168999999999899898531
Q 006532 433 VRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 433 i~vD~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~ 487 (641)
|.++...+|++||||++|+.+ +.++|.+|+|. .+..++++|++|++.|.++++
T Consensus 258 iv~~~~~~~~~pgl~~~Gdaa-~~v~g~~r~G~-t~g~m~~sG~~aA~~i~~~l~ 310 (311)
T d2gjca1 258 VVIHSGAYAGVDNMYFAGMEV-AELDGLNRMGP-TFGAMALSGVHAAEQILKHFA 310 (311)
T ss_dssp HHHHCEECTTSTTEEECTHHH-HHHHTCCBCCS-CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCEECCCCEEEEEEEC-CCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHC
T ss_conf 897998387569999976153-75167677667-899999999999999999865
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.7e-10 Score=80.29 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=34.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 6899996079999999988669-869997158999951
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
||+|||||++||+||+.|+++| +|+|+|+....||..
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~ 38 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRT 38 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
T ss_conf 98998978899999999986899789993499874506
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.09 E-value=1.6e-09 Score=76.06 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=72.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHH------CC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 321268999960799999999886------69-86999715899995101358602104997889999999999565788
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAK------HG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLC 152 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~------~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~ 152 (641)
..+|||+||||||||++||+.|++ .| +|+||||+..++... ..|++..
T Consensus 30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~--~~Ggvl~----------------------- 84 (380)
T d2gmha1 30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT--LSGACLD----------------------- 84 (380)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC--CCCCEEC-----------------------
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--CCCCCCC-----------------------
T ss_conf 363888998977899999999985213413999799981788899874--5351666-----------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCC----------CCCCCCCCCCCCCC-CCCCEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999997829999999985992035----------89997322357982-013144316872799999999999819
Q 006532 153 DDETVRVVCTEGPDRIRELIAIGASFDR----------GEDGNLHLAREGGH-SHHRIVHAADMTGREIERALLEAVVSD 221 (641)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~----------~~~g~~~~~~~~g~-~~~r~~~~~~~~g~~~~~~l~~~~~~~ 221 (641)
+..+..+.. .+... +.+... .............. ..... ........+...+...+..
T Consensus 85 -~~~l~~l~p------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~Ae~- 153 (380)
T d2gmha1 85 -PRAFEELFP------DWKEK-GAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHG--NYVVRLGHLVSWMGEQAEA- 153 (380)
T ss_dssp -THHHHHHCT------THHHH-TCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTT--CEECCHHHHHHHHHHHHHH-
T ss_pred -HHHHHHHCC------CHHHH-CCCCCCCEECCEEEEEECCCCCCCCCCCCHHCCCCC--CEEEHHHHHHHHHHHHHHH-
T ss_conf -889998763------03443-553013200122799633664665456701102455--5132046788899998763-
Q ss_pred CCCEEECCEEEEEEEECCCCCCCEEEEEE
Q ss_conf 99489854278887744899975599999
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVD 250 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~ 250 (641)
.++.+.....+.+++.++++ .+.++.
T Consensus 154 ~g~~~~~~~~~~~~l~~~~g---~~~~~~ 179 (380)
T d2gmha1 154 LGVEVYPGYAAAEILFHEDG---SVKGIA 179 (380)
T ss_dssp TTCEEETTCCEEEEEECTTS---SEEEEE
T ss_pred CCCEEEEECCEEEEEECCCC---CEEECC
T ss_conf 15434430100134422577---311012
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.08 E-value=2e-09 Score=75.44 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCC-CCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 32126899996079999999988669-8699971589999510135-860210499788999999999956578899999
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQ-GGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~-ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 157 (641)
..++||+|||+|++||++|..|.+.| +|+|+||....||.=..+. -|... +.+... ......+..
T Consensus 5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~-----d~~~~~-------~~~s~~~~~- 71 (298)
T d1w4xa1 5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARC-----DIESIE-------YCYSFSEEV- 71 (298)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBC-----SSCTTT-------SSCCSCHHH-
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEE-----CCCCCC-------CCCCCCCCC-
T ss_conf 9879899989659999999999868989899976899646032689998256-----556643-------345566444-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCC--EEECCEEEEEE
Q ss_conf 9999782999999998599203589997322357982013144316872799999999999819994--89854278887
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNI--SVFEHHFAIDL 235 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv--~i~~~~~v~~l 235 (641)
..... +. . .-..+..+..-|...+.+ .++ .|..++.|+++
T Consensus 72 -------------~~~~~--~~------------------~----~~p~~~e~~~Yl~~~a~~-~~L~~~I~f~t~V~~~ 113 (298)
T d1w4xa1 72 -------------LQEWN--WT------------------E----RYASQPEILRYINFVADK-FDLRSGITFHTTVTAA 113 (298)
T ss_dssp -------------HHHCC--CC------------------B----SSCBHHHHHHHHHHHHHH-TTGGGGEECSCCEEEE
T ss_pred -------------CCCCC--CC------------------C----CCCCCCHHHHHHHHHHHH-CCCCCCCCCCCEEEEE
T ss_conf -------------67888--75------------------4----357630389999999998-2986455478577789
Q ss_pred EECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
Q ss_conf 74489997559999999658994999982779996997786
Q 006532 236 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 236 ~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+++. .. ..+ .+.+++ .++++.||+|||-.+.
T Consensus 114 ~~de~~---~~--W~V-~~~~~~--~~~~~~~i~atG~ls~ 146 (298)
T d1w4xa1 114 AFDEAT---NT--WTV-DTNHGD--RIRARYLIMASGQLSD 146 (298)
T ss_dssp EEETTT---TE--EEE-EETTCC--EEEEEEEEECCCSCCC
T ss_pred EEECCC---CC--EEE-CCCCCC--CCCCCEEEEEECCCCC
T ss_conf 985678---95--003-024554--4334338985166455
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.06 E-value=3e-10 Score=80.89 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=35.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 126899996079999999988669-869997158999951
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
..+|+|||||++||+||+.|+++| +|+|+|+....||..
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~ 69 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV 69 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
T ss_conf 9969998988899999999987899889995899887706
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.06 E-value=5.9e-10 Score=78.96 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=79.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 126899996079999999988669-8699971589999510135860210499788999999999956578899999999
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (641)
.+||+|||||++||++|+.|++.| +|+|+||.+... ......+.. .. ......+.. -++
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~-~~~~~~~~~---l~--~~~~~~l~~-----lg~--------- 61 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDY-VLGRIRAGV---LE--QGMVDLLRE-----AGV--------- 61 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHH-HHTCCCCCE---EC--HHHHHHHHH-----TTC---------
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCEEEE---EC--HHHHHHHHH-----CCC---------
T ss_conf 9999998959899999999997899999995799998-889746988---89--889999998-----396---------
Q ss_pred HHHHHHHHHHHHHCCCCCCC----CCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEE
Q ss_conf 97829999999985992035----89997322357982013144316872799999999999819994898542788877
Q 006532 161 CTEGPDRIRELIAIGASFDR----GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 236 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~----~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~ 236 (641)
.+.+...+.+... ...+...... ........ ........+...|.+.+.+. +..+..+...+..+
T Consensus 62 -------~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~ 130 (292)
T d1k0ia1 62 -------DRRMARDGLVHEGVEIAFAGQRRRIDL-KRLSGGKT--VTVYGQTEVTRDLMEAREAC-GATTVYQAAEVRLH 130 (292)
T ss_dssp -------CHHHHHHCEEESCEEEEETTEEEEECH-HHHHTSCC--EEECCHHHHHHHHHHHHHHT-TCEEESSCEEEEEE
T ss_pred -------HHHHHHHCCCCCCEEEEECCCCCCCCC-CCCCCCCC--CEEECHHHHHHHHHHHHHHC-CCCEEECCEEEEEE
T ss_conf -------689996266344169994564422343-34455564--14532999999999999857-99489722466655
Q ss_pred ECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCCC
Q ss_conf 44899975599999996589949999827799969977867
Q 006532 237 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 277 (641)
Q Consensus 237 ~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~~ 277 (641)
..+++ .+ .+... .+|+...+.|+.||.|.|..+.+
T Consensus 131 ~~~~~---~~-~v~~~--~~g~~~~i~a~~vVgADG~~S~v 165 (292)
T d1k0ia1 131 DLQGE---RP-YVTFE--RDGERLRLDCDYIAGCDGFHGIS 165 (292)
T ss_dssp CTTSS---SC-EEEEE--ETTEEEEEECSEEEECCCTTCST
T ss_pred EECCC---CE-EEEEE--CCCCEEEEEECEEEECCCCCCCC
T ss_conf 42167---40-89993--59957999809999899998744
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.03 E-value=1.2e-09 Score=76.93 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=69.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 6899996079999999988669---8699971589999510135860210499788999999999956578899999999
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (641)
.|+|||||.+|+.+|..+++.+ +|+++++.....- ..-++
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~----~~~~~--------------------------------- 44 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF----LSAGM--------------------------------- 44 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB----CGGGH---------------------------------
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC----CCCCC---------------------------------
T ss_conf 79999972999999999985599985999947886663----44576---------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCC
Q ss_conf 97829999999985992035899973223579820131443168727999999999998199948985427888774489
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
..+.. -.+... + .+. ....+.+.+ .|++++.++.|+++..+ +
T Consensus 45 --------~~~l~--~~~~~~-~-~~~------------------------~~~~~~l~~-~gi~v~~~~~V~~i~~~-~ 86 (198)
T d1nhpa1 45 --------QLYLE--GKVKDV-N-SVR------------------------YMTGEKMES-RGVNVFSNTEITAIQPK-E 86 (198)
T ss_dssp --------HHHHT--TSSCCG-G-GSB------------------------SCCHHHHHH-TTCEEEETEEEEEEETT-T
T ss_pred --------CHHHC--CCCCCH-H-HHH------------------------HHHHHHHHH-CCCEEEEEECEEEEEEC-C
T ss_conf --------45441--543326-8-887------------------------766788987-79689995010057640-4
Q ss_pred CCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCC
Q ss_conf 99755999999965899499998277999699778
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
. ++.+.+..+|+...+.++.+|+|+|...
T Consensus 87 ~------~v~~~~~~~g~~~~~~~D~li~a~G~~~ 115 (198)
T d1nhpa1 87 H------QVTVKDLVSGEERVENYDKLIISPGAVP 115 (198)
T ss_dssp T------EEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred C------CCEEEECCCCCCCCCCCCEEEEEECCEE
T ss_conf 4------2103522455324422213457612111
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=99.00 E-value=1.6e-09 Score=76.06 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=39.8
Q ss_pred CCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCC-EEEEEEC-CEEEECCCCCCC
Q ss_conf 9994898542788877448999755999999965899-4999982-779996997786
Q 006532 221 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFIS-KVTLLASGGAGH 276 (641)
Q Consensus 221 ~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g-~~~~i~A-k~VVlAtGg~~~ 276 (641)
+.|++|+.++.|+.++.+.. ...+++||++.+.... ....++| +.||||+|++..
T Consensus 206 ~~nl~i~~~~~V~rv~~~~~-~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~T 262 (351)
T d1ju2a1 206 SNNLRVGVHASVEKIIFSNA-PGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGT 262 (351)
T ss_dssp TTTEEEEESCEEEEEEECCS-SSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHH
T ss_pred HHHHHHHCCCHHHCEEEECC-CCCEEEEEEEEECCCCEEEEEEECCCEEEEECCCCCC
T ss_conf 21211102520010464024-5634667899927991489986249679994762038
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.96 E-value=4.4e-08 Score=66.80 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=79.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCC--CCEEECCC----CCCCHHHHHHHHHHHCCCCCCH
Q ss_conf 6899996079999999988669---8699971589999510135--86021049----9788999999999956578899
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQ--GGVSAVLC----PSDSVESHMQDTIVAGAYLCDD 154 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~iiek~~~~~g~s~~~~--ggi~~~~~----~~d~~~~~~~~~~~~g~~~~~~ 154 (641)
.|+|||||++||+||..|++.| +|+|+||....||.-.+.. +....... ........ ........
T Consensus 6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 79 (335)
T d2gv8a1 6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVG------PAALPVYP 79 (335)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCC------SSSCCBCC
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCC
T ss_conf 699989599999999999982989988999789998872213688775568754453435564346------43235566
Q ss_pred HHH-HHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEE
Q ss_conf 999-99997829999999985-9920358999732235798201314431687279999999999981999489854278
Q 006532 155 ETV-RVVCTEGPDRIRELIAI-GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 232 (641)
Q Consensus 155 ~~~-~~~~~~~~~~i~~l~~~-Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v 232 (641)
... ..+....+ ..+..+ ..++.. .. + .+ .....+...|...+.. .+..|..++.|
T Consensus 80 s~~y~~l~~~~~---~~~~~~~~~~~~~-----------~~----~-~f---~~~~~~~~yl~~~~~~-~~~~I~~~t~V 136 (335)
T d2gv8a1 80 SPLYRDLQTNTP---IELMGYCDQSFKP-----------QT----L-QF---PHRHTIQEYQRIYAQP-LLPFIKLATDV 136 (335)
T ss_dssp CCCCTTCBCSSC---HHHHSCTTCCCCT-----------TC----C-SS---CBHHHHHHHHHHHHGG-GGGGEECSEEE
T ss_pred CCCCHHHHCCCC---HHHHHHHHHCCCC-----------CC----C-CC---CCHHHHHHHHHHHHHH-HHHCCCCCEEE
T ss_conf 510013331771---7664310103786-----------55----6-67---7628999999999998-64334586699
Q ss_pred EEEEECCCCCCCEEEEEEEEECCCCE-EEEEECCEEEECCCCCCC
Q ss_conf 88774489997559999999658994-999982779996997786
Q 006532 233 IDLLTTLDGPDAVCHGVDTLNVETQE-VVRFISKVTLLASGGAGH 276 (641)
Q Consensus 233 ~~l~~~~~g~~~~v~Gv~~~~~~~g~-~~~i~Ak~VVlAtGg~~~ 276 (641)
+++..+ ++ +.. |...+.++++ .....++.||+|||.++.
T Consensus 137 ~~v~~~-~~---~w~-Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~ 176 (335)
T d2gv8a1 137 LDIEKK-DG---SWV-VTYKGTKAGSPISKDIFDAVSICNGHYEV 176 (335)
T ss_dssp EEEEEE-TT---EEE-EEEEESSTTCCEEEEEESEEEECCCSSSS
T ss_pred EEEEEC-CC---EEE-EEEEECCCCCEEEEEEEEEEEECCCCCCC
T ss_conf 999960-99---799-99996578986899971189990464233
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.89 E-value=8.5e-08 Score=64.94 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=76.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||||++||++|+.|+++| +|+|+||........ .+++. . .+
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~---~~g~~--~---------------------~~------- 51 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF---GTGIV--V---------------------QP------- 51 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCC---SCEEE--C---------------------CH-------
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CEEEE--E---------------------CC-------
T ss_conf 929998948899999999997799999992899887887---34999--7---------------------82-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC--C-CCCCCCCCCCCCEEECCCCC-HHHHHHHHHHHHHCCCCCEEECCEEEEEEEE
Q ss_conf 782999999998599203589997--3-22357982013144316872-7999999999998199948985427888774
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGN--L-HLAREGGHSHHRIVHAADMT-GREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~--~-~~~~~~g~~~~r~~~~~~~~-g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.....+..+|+......... . ......+............. ...+...+.. ...++.+..++.++++..
T Consensus 52 ----~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~ 124 (265)
T d2voua1 52 ----ELVHYLLEQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYE---LFGPERYHTSKCLVGLSQ 124 (265)
T ss_dssp ----HHHHHHHHTTCCGGGTCBCCCEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHH---HHCSTTEETTCCEEEEEE
T ss_pred ----CHHHHHHHCCCCHHHHCCCCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHHHHH---HCCCCEEECCCEEEEEEE
T ss_conf ----0789999769625553147776136753677440111234332026788999998---655310361748899996
Q ss_pred CCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
Q ss_conf 489997559999999658994999982779996997786
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
++++ + .+. ..+|+ ++.++.+|.|.|..+.
T Consensus 125 ~~~~----v---~v~-~~dG~--~~~~d~~v~adG~~s~ 153 (265)
T d2voua1 125 DSET----V---QMR-FSDGT--KAEANWVIGADGGASV 153 (265)
T ss_dssp CSSC----E---EEE-ETTSC--EEEESEEEECCCTTCH
T ss_pred ECCC----E---EEE-ECCCC--EEEEEEEECCCCCCCC
T ss_conf 0783----0---899-78998--9999888615424332
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.85 E-value=8.8e-08 Score=64.85 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=78.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 26899996079999999988669--8699971589999510135860210499788999999999956578899999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (641)
.||+|||||+|||++|+.|++.| +|+|+|+.+...... .++. +.+ .....+.. +.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g----~~i~--l~~--~~~~~l~~-------~~-------- 58 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLG----VGIN--IQP--AAVEALAE-------LG-------- 58 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCS----CEEE--ECH--HHHHHHHH-------TT--------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC----EEEE--ECH--HHHHHHHH-------CC--------
T ss_conf 8899999698999999999958998399996899888784----5999--898--99999998-------39--------
Q ss_pred HHHHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHH-HHHCCCCCEEECCEEEEEE
Q ss_conf 9782999999998599203----5899973223579820131443168727999999999-9981999489854278887
Q 006532 161 CTEGPDRIRELIAIGASFD----RGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLE-AVVSDPNISVFEHHFAIDL 235 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~----~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~-~~~~~~gv~i~~~~~v~~l 235 (641)
..+.+.+.+.... ...+|.............................+.. ......++.+..++.++.+
T Consensus 59 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 132 (288)
T d3c96a1 59 ------LGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERI 132 (288)
T ss_dssp ------CHHHHHHHSEEECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEE
T ss_pred ------CHHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEE
T ss_conf ------62666764103321114769998887413443333557642000125677888999985167166227589885
Q ss_pred EECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCCC
Q ss_conf 74489997559999999658994999982779996997786
Q 006532 236 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 276 (641)
Q Consensus 236 ~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~~ 276 (641)
..+++ .+ .+...+ .+++..++.++.||.|.|..+.
T Consensus 133 ~~~~~----~v-~v~~~~-g~~~~~~~~ad~vi~ADG~~S~ 167 (288)
T d3c96a1 133 EERDG----RV-LIGARD-GHGKPQALGADVLVGADGIHSA 167 (288)
T ss_dssp EEETT----EE-EEEEEE-TTSCEEEEEESEEEECCCTTCH
T ss_pred EECCC----CE-EEEEEC-CCCCEEEEEECEEECCCCCCCE
T ss_conf 41188----28-999986-9997599961213125776432
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=3.9e-07 Score=60.65 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=70.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 32126899996079999999988669-86999715899995101358602104997889999999999565788999999
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 158 (641)
++.+||+|||||++||.||+.|++.| +|+|+|+.... |.... ...+.
T Consensus 3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~-g~~~~-~~~i~------------------------------ 50 (190)
T d1trba1 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG-GQLTT-TTEVE------------------------------ 50 (190)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTT-GGGGG-CSBCC------------------------------
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC-CCCCC-CCHHH------------------------------
T ss_conf 77882999998989999999999869935999842036-66301-11321------------------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEEC
Q ss_conf 99978299999999859920358999732235798201314431687279999999999981999489854278887744
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
. -..+ .....+..+...+..++.+ .++.+... .|+.+...
T Consensus 51 --------------~-~~~~-----------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~V~~~~~~ 90 (190)
T d1trba1 51 --------------N-WPGD-----------------------PNDLTGPLLMERMHEHATK-FETEIIFD-HINKVDLQ 90 (190)
T ss_dssp --------------C-STTC-----------------------CSSCBHHHHHHHHHHHHHH-TTCEEECC-CEEEEECS
T ss_pred --------------H-HHCC-----------------------CCCCCHHHHHHHHHHHHHH-CCCEEECC-EEEEEECC
T ss_conf --------------1-0010-----------------------2232308999999999986-28187125-05898537
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCEEEECCCCC
Q ss_conf 899975599999996589949999827799969977
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 274 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~ 274 (641)
++. . .+.. ... .+.++.+|+++|..
T Consensus 91 ~~~---~----~v~~-~~~---~~~~~~viva~G~~ 115 (190)
T d1trba1 91 NRP---F----RLNG-DNG---EYTCDALIIATGAS 115 (190)
T ss_dssp SSS---E----EEEE-SSC---EEEEEEEEECCCEE
T ss_pred CCC---E----EEEE-EEE---EEEEEEEEEECCEE
T ss_conf 996---8----9999-423---67610455421301
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=2.6e-08 Score=68.26 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=35.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 26899996079999999988669-869997158999951
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
+||||||||++||+||..|++.| +|+|+|+....||.+
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~ 40 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA 40 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGG
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 659998975999999999996899679998899763616
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.53 E-value=6.2e-08 Score=65.80 Aligned_cols=47 Identities=28% Similarity=0.430 Sum_probs=39.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 126899996079999999988669-86999715899995101358602
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS 128 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~ 128 (641)
..+|+|||||++||++|+.|+++| +|+|+||....+++|..+.+.+.
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~s~~~~~~~~ 53 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWA 53 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCTTSSGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHC
T ss_conf 996899995099999999999789978999688888875145554540
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4.8e-08 Score=66.56 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=36.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 2126899996079999999988669-869997158999951
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
+..+|+|||||+|||+||+.|+++| +|+|+|+....||..
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~ 44 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV 44 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 99948998988899999999985899989990799875667
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=4.1e-08 Score=66.97 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=32.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 2126899996079999999988669-8699971589
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~ 115 (641)
++|||+|||||+||+.||+.|++.| +|+|+|++..
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~ 36 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKEL 36 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 967889989799999999999978997999961676
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.43 E-value=1.2e-07 Score=64.07 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=33.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-C-EEEEEECCCCCCCC
Q ss_conf 6899996079999999988669-8-69997158999951
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~-V~iiek~~~~~g~s 120 (641)
||+|||||+|||+||+.|+++| + |+|+|+....||..
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~ 40 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM 40 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCEE
T ss_conf 899989838999999999867998389997989987458
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=7.3e-06 Score=52.37 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=73.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.++|||||+-|+-.|-.+++.| +|+|+++.+..-. ..++
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~--------------------------------~~d~------- 64 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA--------------------------------SMDG------- 64 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS--------------------------------SSCH-------
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCH--------------------------------HHHH-------
T ss_conf 8399998770688999999860851468985563233--------------------------------4544-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+...+.+.+++ .||+++.++.++++..++++
T Consensus 65 -----------------------------------------------ei~~~l~~~l~~-~GV~i~~~~~v~~v~~~~~~ 96 (122)
T d1v59a2 65 -----------------------------------------------EVAKATQKFLKK-QGLDFKLSTKVISAKRNDDK 96 (122)
T ss_dssp -----------------------------------------------HHHHHHHHHHHH-TTCEEECSEEEEEEEEETTT
T ss_pred -----------------------------------------------HHHHHHHHHHHH-CCCEEEECCEEEEEEEECCC
T ss_conf -----------------------------------------------348999999972-55148827889999994997
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEEC
Q ss_conf 97559999999658994999982779996
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLA 270 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlA 270 (641)
....+...+..+++..++.++.|++|
T Consensus 97 ---~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 97 ---NVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp ---TEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred ---CEEEEEEEECCCCCEEEEEECEEEEC
T ss_conf ---38999997278898279993999989
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.41 E-value=4.2e-06 Score=53.92 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=68.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||||+.|+-+|..+++.| +|+|+|+.+..-... .++
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~-------------------------------~~~------- 77 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-------------------------------TAP------- 77 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-------------------------------SCH-------
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-------------------------------CCH-------
T ss_conf 889999983378999899876272103642055344333-------------------------------315-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+...+.+.+++ .||+++.++.++.+....++
T Consensus 78 -----------------------------------------------~~~~~~~~~~~~-~GV~i~~~~~v~~i~~~~~~ 109 (133)
T d1q1ra2 78 -----------------------------------------------PVSAFYEHLHRE-AGVDIRTGTQVCGFEMSTDQ 109 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHH-HTCEEECSCCEEEEEECTTT
T ss_pred -----------------------------------------------HHHHHHHHCCCC-CCCEEEECCEEEEEEEECCC
T ss_conf -----------------------------------------------565443301243-25289968857999992899
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 9755999999965899499998277999699
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
.++..+.. .+|+ .+.++.||+|+|
T Consensus 110 --~~v~~v~~---~~G~--~i~~D~vi~a~G 133 (133)
T d1q1ra2 110 --QKVTAVLC---EDGT--RLPADLVIAGIG 133 (133)
T ss_dssp --CCEEEEEE---TTSC--EEECSEEEECCC
T ss_pred --CEEEEEEC---CCCC--EEECCEEEEEEC
T ss_conf --66999997---9998--999999999139
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.41 E-value=7.3e-06 Score=52.36 Aligned_cols=98 Identities=14% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||||..|+-.|..+++.| +|.++++.+.... + .+++
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-------~-------------------------~d~~------ 64 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-------I-------------------------KDNE------ 64 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-------C-------------------------CSHH------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCHHHEEEECCCHHHC-------C-------------------------CCCC------
T ss_conf 7799999878999999999740501057411421111-------3-------------------------3210------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+...+.+.+++ .|++++.++.++++..++++
T Consensus 65 ------------------------------------------------~~~~~~~~l~~-~gI~v~~~~~v~~i~~~~~~ 95 (121)
T d1mo9a2 65 ------------------------------------------------TRAYVLDRMKE-QGMEIISGSNVTRIEEDANG 95 (121)
T ss_dssp ------------------------------------------------HHHHHHHHHHH-TTCEEESSCEEEEEEECTTS
T ss_pred ------------------------------------------------HHHHHHHHHHC-CCCEEECCCEEEEEEECCCC
T ss_conf ------------------------------------------------05666654430-35189749889999833991
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 9755999999965899499998277999699
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
++..+.... .+....+.++.||+|+|
T Consensus 96 ---~~~~~~~~~--~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 96 ---RVQAVVAMT--PNGEMRIETDFVFLGLG 121 (121)
T ss_dssp ---BEEEEEEEE--TTEEEEEECSCEEECCC
T ss_pred ---EEEEEEEEE--CCCCEEEECCEEEEEEC
T ss_conf ---499999995--89989999099999889
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=2.7e-06 Score=55.21 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=67.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 6899996079999999988669-869997158999951013586021049978899999999995657889999999997
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 162 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (641)
.|+|||||+.|+-+|..+++.| +|+|+++.+.... ..+++
T Consensus 23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~--------------------------------~~d~~------- 63 (116)
T d1gesa2 23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP--------------------------------SFDPM------- 63 (116)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST--------------------------------TSCHH-------
T ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEEEECCHHHH--------------------------------HCCHH-------
T ss_conf 899988972357778875426638999840323333--------------------------------10103-------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCCC
Q ss_conf 82999999998599203589997322357982013144316872799999999999819994898542788877448999
Q 006532 163 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 242 (641)
Q Consensus 163 ~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 242 (641)
+...+.+.+++ .||+++.++.+..+..++++
T Consensus 64 -----------------------------------------------~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~~- 94 (116)
T d1gesa2 64 -----------------------------------------------ISETLVEVMNA-EGPQLHTNAIPKAVVKNTDG- 94 (116)
T ss_dssp -----------------------------------------------HHHHHHHHHHH-HSCEEECSCCEEEEEECTTS-
T ss_pred -----------------------------------------------HHHHHHHHHHH-CCCEEEECCEEEEEEECCCC-
T ss_conf -----------------------------------------------69999999997-79999939999999986996-
Q ss_pred CCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 755999999965899499998277999699
Q 006532 243 DAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 243 ~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
.+. +. ..+|+ .+.++.||+|+|
T Consensus 95 --~~~-v~---~~~g~--~~~~D~vi~a~G 116 (116)
T d1gesa2 95 --SLT-LE---LEDGR--SETVDCLIWAIG 116 (116)
T ss_dssp --CEE-EE---ETTSC--EEEESEEEECSC
T ss_pred --EEE-EE---ECCCC--EEECCEEEEECC
T ss_conf --799-99---89999--999299999009
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.40 E-value=7.6e-06 Score=52.25 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.++|||||.-|+-.|..+++.| +|+++++....-. ..+++
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~--------------------------------~~d~e------ 64 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP--------------------------------AVDEQ------ 64 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST--------------------------------TSCHH------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCC--------------------------------CCCCH------
T ss_conf 7299998872799999999976993578876022477--------------------------------53100------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+...+.+.+++ .|++++.++.++.+..++++
T Consensus 65 ------------------------------------------------i~~~l~~~l~~-~Gv~i~~~~~v~~i~~~~~~ 95 (119)
T d3lada2 65 ------------------------------------------------VAKEAQKILTK-QGLKILLGARVTGTEVKNKQ 95 (119)
T ss_dssp ------------------------------------------------HHHHHHHHHHH-TTEEEEETCEEEEEEECSSC
T ss_pred ------------------------------------------------HHHHHHHHHHH-CCCEEECCCEEEEEEEECCE
T ss_conf ------------------------------------------------37999999875-59151048689999990999
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 9755999999965899499998277999699
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
+. +...+ .+....+.++.|++|+|
T Consensus 96 ----v~-v~~~~--~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 96 ----VT-VKFVD--AEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp ----EE-EEEES--SSEEEEEEESEEEECSC
T ss_pred ----EE-EEEEE--CCCCEEEECCEEEEEEC
T ss_conf ----99-99998--99989999899999129
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.37 E-value=1.5e-07 Score=63.28 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=34.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 6899996079999999988669-869997158999951
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
.|+|||||+|||+||+.|++.| +|+|+|+.+..||..
T Consensus 3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~ 40 (373)
T d1seza1 3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKL 40 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 89998968899999999986899899995899885866
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.32 E-value=2.1e-05 Score=49.34 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=70.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.++|||||+.|+-.|..+++.| +|+|+++.....+ .|++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~---------------------------------~D~~------ 61 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG---------------------------------FDQD------ 61 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTT---------------------------------SCHH------
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCEEEEEEECHHHCC---------------------------------CCHH------
T ss_conf 8099998872189999998612976999972024224---------------------------------8999------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+...+.+.+++ .||+|+.++.++++...+++
T Consensus 62 ------------------------------------------------~~~~l~~~l~~-~Gv~i~~~~~v~~~~~~~~~ 92 (122)
T d1h6va2 62 ------------------------------------------------MANKIGEHMEE-HGIKFIRQFVPTKIEQIEAG 92 (122)
T ss_dssp ------------------------------------------------HHHHHHHHHHH-TTEEEEESCEEEEEEEEECS
T ss_pred ------------------------------------------------HHHHHHHHHHH-CCCEEEECCEEEEEEEECCC
T ss_conf ------------------------------------------------99999999997-79999989989999994389
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 9755999999965899499998277999699
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
.. ....+......+++...+.++.|++|+|
T Consensus 93 ~~-~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 93 TP-GRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp TT-CEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred CC-CEEEEEEEECCCCCEEEEECCEEEEEEC
T ss_conf 86-3799999978988489998799999749
|
| >d1qo8a3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.32 E-value=2.9e-07 Score=61.46 Aligned_cols=95 Identities=28% Similarity=0.420 Sum_probs=56.6
Q ss_pred CCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH---------HHHC
Q ss_conf 3124202117996898199885544453222248635899999999993699759991789996589---------9458
Q 006532 331 SFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKI---------LSHF 401 (641)
Q Consensus 331 ~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ld~~~~~~~~~---------~~~~ 401 (641)
.++++|.++++|+++||.+|+||+++ ..+++.+...+..+... ..++++|......... ..+.
T Consensus 9 ~~li~e~~rG~GgIlVn~~G~RF~nE------~~~~~~~~~~~~~~~~~--~~~~i~d~~~~~~~~~~~~~~~~~~~~~a 80 (146)
T d1qo8a3 9 RILISETVRGVGAVMVNKDGNRFISE------LTTRDKASDAILKQPGQ--FAWIIFDNQLYKKAKMVRGYDHLEMLYKG 80 (146)
T ss_dssp CSBCCTHHHHTTCEEECTTSCCCSCT------TSCHHHHHHHHHTSGGG--CEEEEEEHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CCEEEEHHHCCCEEEECCCCCCCCCC------CCCCCEEEEEECCCCCC--CCCCCCCHHHHHHHCCCCCCCCCCCEEEC
T ss_conf 61764132268849999888870010------16521341000024566--42334330244320011101236826875
Q ss_pred HHHHHHHHHC--------------------CCCCC-----------CCC---EEEEEEECCCCCCE
Q ss_conf 1099999981--------------------99999-----------997---44742002114734
Q 006532 402 PNIAAECLKY--------------------GLDIT-----------SQP---IPVVPAAHYMCGGV 433 (641)
Q Consensus 402 ~~~~~~~~~~--------------------G~d~~-----------~~~---i~v~p~~~~~~GGi 433 (641)
+++.+++.+. |.|+. +.| +++.|..|+++|||
T Consensus 81 ~tl~eLA~~~g~~~~~l~~tv~~yN~~~~~g~d~~f~r~~~~~~~~~~Pfya~~v~p~~~~T~GGl 146 (146)
T d1qo8a3 81 DTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAFGRADMPLNMTQSPYYAVKVAPGIHHTMGGV 146 (146)
T ss_dssp SSHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCTTTCCSCCCCCSCSSSEEEEEEEEEEEEECCEE
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEHHEEEECCCC
T ss_conf 879999987387620258889999999862998766754567777779848999884135877899
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=4.6e-07 Score=60.16 Aligned_cols=38 Identities=26% Similarity=0.495 Sum_probs=34.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCC
Q ss_conf 126899996079999999988669-86999715899995
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~ 119 (641)
..+|+|||||||||.||+.|+++| +|+|+|+.+..+|.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~ 81 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ 81 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCE
T ss_conf 758999896599999999998632456898336766866
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.28 E-value=1.4e-05 Score=50.59 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=67.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||||+.|+-+|..+++.| +|+|+|+.+..-. . .+++
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~-------~-------------------------~d~~------ 64 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-------G-------------------------FEKQ------ 64 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-------T-------------------------SCHH------
T ss_pred CEEEEECCCCCCEEEEEEECCCCCEEEEEEECCEECC-------C-------------------------CCCH------
T ss_conf 8699999986521644300125517999973130011-------3-------------------------4412------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+...+.+.+++ .||+++.++.++++..++++
T Consensus 65 ------------------------------------------------~~~~l~~~l~~-~GI~i~~~~~v~~i~~~~~~ 95 (117)
T d1ebda2 65 ------------------------------------------------MAAIIKKRLKK-KGVEVVTNALAKGAEEREDG 95 (117)
T ss_dssp ------------------------------------------------HHHHHHHHHHH-TTCEEEESEEEEEEEEETTE
T ss_pred ------------------------------------------------HHHHHHHHHHH-CCCEEECCCEEEEEEECCCE
T ss_conf ------------------------------------------------37899999975-59789849889999983998
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEEC
Q ss_conf 97559999999658994999982779996
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLA 270 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlA 270 (641)
+. +.. ..+|+..++.++.||+.
T Consensus 96 ----~~-v~~--~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 96 ----VT-VTY--EANGETKTIDADYVLVT 117 (117)
T ss_dssp ----EE-EEE--EETTEEEEEEESEEEEC
T ss_pred ----EE-EEE--EECCCEEEEEEEEEEEC
T ss_conf ----99-999--94998799993799989
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.27 E-value=3.9e-07 Score=60.61 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=35.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC
Q ss_conf 26899996079999999988669-869997158999951
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 120 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s 120 (641)
..|+|||||++||+||..|+++| +|+|+|+....||.+
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~ 41 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 41 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEE
T ss_conf 879998974999999999996899789997899886766
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=98.25 E-value=3.9e-07 Score=60.63 Aligned_cols=37 Identities=32% Similarity=0.482 Sum_probs=32.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHH-----HCC-CEEEEEECCCC
Q ss_conf 32126899996079999999988-----669-86999715899
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVA-----KHG-TVAVITKAEPH 116 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa-----~~G-~V~iiek~~~~ 116 (641)
+..|||+|||||++||++|..|+ +.| +|+|+|+.+.+
T Consensus 5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 8788989989598999999998705332489868998689998
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=3.7e-07 Score=60.76 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=38.8
Q ss_pred CCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 73486899973268702325446778889982032316899999999989989853104
Q 006532 431 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 431 GGi~vD~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
|.|.+|...+|++||+||+|||. +..+. ....+...|..|+..++.|+...
T Consensus 131 g~i~v~~~~~t~~~gv~a~gd~~-~~~~~-------~~vva~g~G~~aA~~~~~~l~~~ 181 (184)
T d1fl2a1 131 GEIIIDAKCETNVKGVFAAGDCT-TVPYK-------QIIIATGEGAKASLSAFDYLIRT 181 (184)
T ss_dssp SCBCCCTTCBCSSTTEEECSTTB-SCSSC-------CHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CEECCCCCEEEECCCEEEEEEEC-CCCCC-------CCEEEEECCHHHHHHHHHHHHHC
T ss_conf 50525884043079889976505-73338-------81999988699999999998664
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.20 E-value=7.3e-06 Score=52.37 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=64.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.++|||||+.|+-.|..+++.| +|+|+|+.+..-. . .+++
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~---------------~-----------------~d~~------ 63 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP---------------T-----------------YDSE------ 63 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------------T-----------------SCHH------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCC---------------C-----------------CCCH------
T ss_conf 8699999977899999998432661278854000046---------------5-----------------3202------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+...+.+.+.+ .||+++.++.|+++. ++
T Consensus 64 ------------------------------------------------~~~~l~~~l~~-~gV~i~~~~~V~~i~---~~ 91 (115)
T d1lvla2 64 ------------------------------------------------LTAPVAESLKK-LGIALHLGHSVEGYE---NG 91 (115)
T ss_dssp ------------------------------------------------HHHHHHHHHHH-HTCEEETTCEEEEEE---TT
T ss_pred ------------------------------------------------HHHHHHHHHHH-HCCEEECCCEEEEEC---CC
T ss_conf ------------------------------------------------67999999986-013077376899982---98
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 9755999999965899499998277999699
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
. ..... ..++...+.++.||+|+|
T Consensus 92 ---~---~~~~~-~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 92 ---C---LLAND-GKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp ---E---EEEEC-SSSCCCEECCSCEEECCC
T ss_pred ---E---EEEEE-CCCCEEEEECCEEEEECC
T ss_conf ---6---99998-289849999699999339
|
| >d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.18 E-value=2.8e-06 Score=55.07 Aligned_cols=90 Identities=31% Similarity=0.422 Sum_probs=57.8
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 32234200038999889877777631242021179968981998855444532222486358999999999936997599
Q 006532 307 FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVL 386 (641)
Q Consensus 307 ~~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 386 (641)
|+|+||+.... ..+++++.+++.|+++||.+|+||++ |..+++.+++++..+. +...++.
T Consensus 1 ~iQ~hPt~~p~------------~g~l~~~a~rg~GgI~VN~~G~RF~n------E~~~~~~~~~ai~~~~--~~~~~~I 60 (146)
T d1d4ca3 1 YIQAHPTYSPA------------GGVMITEAVRGNGAIVVNREGNRFMN------EITTRDKASAAILQQK--GESAYLV 60 (146)
T ss_dssp CEEEEEEEETT------------TTEECCTHHHHTTCEEECTTSCCCSC------TTSCHHHHHHHHHTST--TSCEEEE
T ss_pred CEECCCCCCCC------------CCCEECHHHCCCCEEEECCCCCHHHH------CCCCHHHHHHHHHHCC--CCCEEEE
T ss_conf 98757885588------------86061432215887998875003555------2354859999998514--8725898
Q ss_pred EECCC----CCHHHH-----HHHCHHHHHHHHHCCCCCC
Q ss_conf 91789----996589-----9458109999998199999
Q 006532 387 LDISH----KPTEKI-----LSHFPNIAAECLKYGLDIT 416 (641)
Q Consensus 387 ld~~~----~~~~~~-----~~~~~~~~~~~~~~G~d~~ 416 (641)
+|... ...+.. ..+..++.++..+.|+|+.
T Consensus 61 ~D~~~~~~~~~~~~~~~~g~~~ka~TleeLA~~~gid~~ 99 (146)
T d1d4ca3 61 FDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAA 99 (146)
T ss_dssp EEHHHHHTCTTHHHHHHTTCCEEESSHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHCCCHH
T ss_conf 048997653101332225805574889999998698978
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=5.3e-05 Score=46.76 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=67.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||||..|+-.|..+++.| +|+|+++....-. . .+++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~-------~-------------------------~d~~------ 64 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-------S-------------------------FDSM------ 64 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-------T-------------------------SCHH------
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCC-------C-------------------------HHHH------
T ss_conf 8799986883289999987517857899960452212-------1-------------------------1568------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+...+.+.+++ .||+++.++.++++..++++
T Consensus 65 ------------------------------------------------~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~g 95 (125)
T d3grsa2 65 ------------------------------------------------ISTNCTEELEN-AGVEVLKFSQVKEVKKTLSG 95 (125)
T ss_dssp ------------------------------------------------HHHHHHHHHHH-TTCEEETTEEEEEEEEETTE
T ss_pred ------------------------------------------------HHHHHHHHHHH-CCCEEEECCEEEEEEECCCE
T ss_conf ------------------------------------------------99999999997-89899969989999983992
Q ss_pred CCCEEEEEEEEECCCC----EEEEEECCEEEECCC
Q ss_conf 9755999999965899----499998277999699
Q 006532 242 PDAVCHGVDTLNVETQ----EVVRFISKVTLLASG 272 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g----~~~~i~Ak~VVlAtG 272 (641)
... ......+| ....+.++.||+|+|
T Consensus 96 ---~~v--~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 96 ---LEV--SMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp ---EEE--EEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred ---EEE--EEEECCCCCCCCCCCCCCCCEEEEEEC
T ss_conf ---899--999956883727630235999999769
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.13 E-value=1.9e-06 Score=56.24 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=35.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCC
Q ss_conf 32126899996079999999988669-86999715899995
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~ 119 (641)
....+|+|||||+||++||..|+++| +|+|+|+....+|.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~ 87 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH 87 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 67853899863489999999998733530268523212772
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=7.4e-05 Score=45.86 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=76.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 2126899996079999999988669-869997158999951013586021049978899999999995657889999999
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 159 (641)
..-+|+|||||-+.+-.|+.|++.. +|.|+.+++...+ .
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~----------------------------------~------ 68 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA----------------------------------D------ 68 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS----------------------------------C------
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCC----------------------------------C------
T ss_conf 996599970788998888755325774179850551011----------------------------------1------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECC
Q ss_conf 99782999999998599203589997322357982013144316872799999999999819994898542788877448
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
..+.+++.+.++|+++.++.++++.-+
T Consensus 69 ----------------------------------------------------~~~~~~~~~~~~I~v~~~~~v~~i~G~- 95 (126)
T d1fl2a2 69 ----------------------------------------------------QVLQDKLRSLKNVDIILNAQTTEVKGD- 95 (126)
T ss_dssp ----------------------------------------------------HHHHHHHHTCTTEEEESSEEEEEEEES-
T ss_pred ----------------------------------------------------CCCCCCCCCCCCEEEECCCCEEEEECC-
T ss_conf ----------------------------------------------------000111124543268727525999722-
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 999755999999965899499998277999699
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
++ .+.++...+..+|+...+.++.|+++-|
T Consensus 96 ~~---~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 96 GS---KVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp SS---SEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred CC---CEEEEEEEECCCCCEEEEECCEEEEEEC
T ss_conf 23---1014899988999789998998999767
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.08 E-value=4.2e-05 Score=47.41 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=65.1
Q ss_pred CCEEEECCCHHHHHHHHHHHH---CC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 268999960799999999886---69-86999715899995101358602104997889999999999565788999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAK---HG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~---~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 158 (641)
-.++|||||+.|+-.|..+++ .| +|.++++.+..-. + .++
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-------~-------------------------~d~---- 62 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-------G-------------------------FDS---- 62 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-------T-------------------------SCH----
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC-------C-------------------------CCC----
T ss_conf 8699999985788899986753236622100012441113-------3-------------------------230----
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEEC
Q ss_conf 99978299999999859920358999732235798201314431687279999999999981999489854278887744
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+...+.+.+++ .||+++.++.++++..+
T Consensus 63 --------------------------------------------------~~~~~~~~~l~~-~GI~v~~~~~v~~i~~~ 91 (117)
T d1feca2 63 --------------------------------------------------ELRKQLTEQLRA-NGINVRTHENPAKVTKN 91 (117)
T ss_dssp --------------------------------------------------HHHHHHHHHHHH-TTEEEEETCCEEEEEEC
T ss_pred --------------------------------------------------HHHHHHHHHHHH-CCEEEECCCEEEEEEEC
T ss_conf --------------------------------------------------146899999863-73799839889999987
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 8999755999999965899499998277999699
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
+++ +..+.. .+|+ .+.++.||+|+|
T Consensus 92 ~~g----~~~v~~---~~g~--~i~~D~Vi~a~G 116 (117)
T d1feca2 92 ADG----TRHVVF---ESGA--EADYDVVMLAIG 116 (117)
T ss_dssp TTS----CEEEEE---TTSC--EEEESEEEECSC
T ss_pred CCC----EEEEEE---CCCC--EEECCEEEEECC
T ss_conf 997----799998---8998--999399999138
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.07 E-value=5.5e-05 Score=46.70 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=63.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
..|+|||||+.|+-+|..++++| +|+|+|+.+..-.. ..++
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------~~~~------- 72 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-------------------------------AAPA------- 72 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------TSCH-------
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-------------------------------CCCH-------
T ss_conf 85999996334999888860666169999606621144-------------------------------5888-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+...+.+.+++ .||+++.++.++++. ++
T Consensus 73 -----------------------------------------------~~~~~~~~~l~~-~GV~i~~~~~v~~~~---~~ 101 (121)
T d1d7ya2 73 -----------------------------------------------TLADFVARYHAA-QGVDLRFERSVTGSV---DG 101 (121)
T ss_dssp -----------------------------------------------HHHHHHHHHHHT-TTCEEEESCCEEEEE---TT
T ss_pred -----------------------------------------------HHHHHHHHHHHH-CCCEEEECCEEEEEE---CC
T ss_conf -----------------------------------------------999999999997-794999698999873---89
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 9755999999965899499998277999699
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
. +.. .+|+ .+.++.||+|+|
T Consensus 102 ---~---v~l---~dg~--~i~~D~vi~a~G 121 (121)
T d1d7ya2 102 ---V---VLL---DDGT--RIAADMVVVGIG 121 (121)
T ss_dssp ---E---EEE---TTSC--EEECSEEEECSC
T ss_pred ---E---EEE---CCCC--EEECCEEEEEEC
T ss_conf ---9---997---7999--999999999119
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.07 E-value=1.8e-05 Score=49.89 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=69.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.++|||||..|+-.|..+++.| +|+|+|+.+..-. ..|++
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~--------------------------------~~d~~------ 68 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ--------------------------------GADRD------ 68 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST--------------------------------TSCHH------
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCCCC--------------------------------CCHHH------
T ss_conf 7279988887998787773037977999986033364--------------------------------20024------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+...+.+.+.+ .|++++.++.+.++..++++
T Consensus 69 ------------------------------------------------~~~~l~~~l~~-~gv~~~~~~~v~~v~~~~~g 99 (125)
T d1ojta2 69 ------------------------------------------------LVKVWQKQNEY-RFDNIMVNTKTVAVEPKEDG 99 (125)
T ss_dssp ------------------------------------------------HHHHHHHHHGG-GEEEEECSCEEEEEEEETTE
T ss_pred ------------------------------------------------HHHHHHHHHHH-CCCCCCCCCEEEEEEECCCC
T ss_conf ------------------------------------------------78999999987-58201548378999976991
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 9755999999965899499998277999699
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
+ -+...+ .+|+...+.++.|++|+|
T Consensus 100 ----~-~v~~~~-~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 100 ----V-YVTFEG-ANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp ----E-EEEEES-SSCCSSCEEESCEEECCC
T ss_pred ----E-EEEEEE-CCCCEEEEECCEEEEECC
T ss_conf ----8-999996-899868999699999048
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.06 E-value=3.8e-05 Score=47.71 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.++|||||.-|+-.|..+++.| +|+|+++.+..-.. .++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~--------------------------------~d~------- 66 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT--------------------------------MDA------- 66 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT--------------------------------SCH-------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCH--------------------------------HHH-------
T ss_conf 72899866527889999998539917999975644731--------------------------------230-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+...+.+.+++ .||+++.++.+.++..++++
T Consensus 67 -----------------------------------------------~~~~~l~~~l~~-~GI~i~~~~~v~~i~~~~~~ 98 (123)
T d1dxla2 67 -----------------------------------------------EIRKQFQRSLEK-QGMKFKLKTKVVGVDTSGDG 98 (123)
T ss_dssp -----------------------------------------------HHHHHHHHHHHH-SSCCEECSEEEEEEECSSSS
T ss_pred -----------------------------------------------CCHHHHHHHHHC-CCCEEECCCCEEEEEECCCE
T ss_conf -----------------------------------------------310655445540-56248858725999971681
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECC
Q ss_conf 975599999996589949999827799969
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLAS 271 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 271 (641)
.. +.+....+|+...+.++.|++|+
T Consensus 99 ---~~--v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 99 ---VK--LTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp ---EE--EEEEESSSCCCEEEEESEEECCC
T ss_pred ---EE--EEEEECCCCEEEEEECCEEEECC
T ss_conf ---89--99999999918999847999859
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1e-04 Score=45.01 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=64.7
Q ss_pred CCEEEECCCHHHHHHHHHHHH----CC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 268999960799999999886----69-8699971589999510135860210499788999999999956578899999
Q 006532 83 FDFSVIGSGVAGLCYALEVAK----HG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 157 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~----~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 157 (641)
-.++|||||+.|+-.|..+++ .| +|+++++.+..-+. ..++
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~-------------------------------~~~~--- 83 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK-------------------------------ILPE--- 83 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT-------------------------------TSCH---
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC-------------------------------CCCH---
T ss_conf 889999987889999999998777559889882335457753-------------------------------3779---
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEE
Q ss_conf 99997829999999985992035899973223579820131443168727999999999998199948985427888774
Q 006532 158 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 237 (641)
Q Consensus 158 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~ 237 (641)
.+...+.+.+.+ .||+++.++.|..+..
T Consensus 84 ---------------------------------------------------~~~~~~~~~l~~-~GV~~~~~~~V~~i~~ 111 (137)
T d1m6ia2 84 ---------------------------------------------------YLSNWTMEKVRR-EGVKVMPNAIVQSVGV 111 (137)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHT-TTCEEECSCCEEEEEE
T ss_pred ---------------------------------------------------HHHHHHHHHHHH-CCCEEEECCEEEEEEE
T ss_conf ---------------------------------------------------999999988886-7949995978999995
Q ss_pred CCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 48999755999999965899499998277999699
Q 006532 238 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 238 ~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
+ ++ .+ .+. ..+|+ .|.|+.||.|+|
T Consensus 112 ~-~~---~~-~v~---l~~G~--~i~aD~Vi~A~G 136 (137)
T d1m6ia2 112 S-SG---KL-LIK---LKDGR--KVETDHIVAAVG 136 (137)
T ss_dssp E-TT---EE-EEE---ETTSC--EEEESEEEECCC
T ss_pred C-CC---EE-EEE---ECCCC--EEECCEEEEEEC
T ss_conf 2-99---89-999---89999--999799999454
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.97 E-value=5.1e-06 Score=53.40 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=32.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-C-EEEEEECCCCCC
Q ss_conf 126899996079999999988669-8-699971589999
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHES 118 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~-V~iiek~~~~~g 118 (641)
.-.|+|||||++||.||+.|+++| + |+|+||.+..+|
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg 42 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 42 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCST
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 997999997099999999999879985999981684440
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=97.97 E-value=0.0001 Score=44.93 Aligned_cols=94 Identities=10% Similarity=0.140 Sum_probs=65.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||||..|+-.|..+++.| +|+|+++....-. ..++
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~--------------------------------~~d~------- 63 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR--------------------------------KFDE------- 63 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT--------------------------------TSCH-------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEHHCCCCC--------------------------------CCCH-------
T ss_conf 8799989965799999999860655311101002134--------------------------------6669-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+...+.+.+.+ .||+++.++.++++...+++
T Consensus 64 -----------------------------------------------~~~~~~~~~l~~-~gV~i~~~~~v~~i~~~~~~ 95 (117)
T d1onfa2 64 -----------------------------------------------SVINVLENDMKK-NNINIVTFADVVEIKKVSDK 95 (117)
T ss_dssp -----------------------------------------------HHHHHHHHHHHH-TTCEEECSCCEEEEEESSTT
T ss_pred -----------------------------------------------HHHHHHHHHHHH-CCCEEEECCEEEEEEECCCC
T ss_conf -----------------------------------------------999999999986-79899979989999986998
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECC
Q ss_conf 975599999996589949999827799969
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLAS 271 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 271 (641)
.+ -+ ...+|+.. ..++.||+|-
T Consensus 96 ---~~-~v---~~~~G~~~-~~~D~Vi~AI 117 (117)
T d1onfa2 96 ---NL-SI---HLSDGRIY-EHFDHVIYCV 117 (117)
T ss_dssp ---CE-EE---EETTSCEE-EEESEEEECC
T ss_pred ---EE-EE---EECCCCEE-EECCEEEEEC
T ss_conf ---59-99---98999999-7389999939
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.96 E-value=2.5e-06 Score=55.36 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=32.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------CEEEEEECCCCCC
Q ss_conf 126899996079999999988669--------8699971589999
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--------TVAVITKAEPHES 118 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--------~V~iiek~~~~~g 118 (641)
.+.|+|||+|||||+||+.|+++| +|+|+|+.+.++|
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG 46 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 46 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 857999896889999999999758844367873699942899887
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.94 E-value=6.3e-05 Score=46.29 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=62.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-+|+|||||+.|+-.|..+++.| +|+|+++.+...+ .+++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~---------------------------------~d~~------ 73 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG---------------------------------LDEE------ 73 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT---------------------------------CCHH------
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCC---------------------------------CCHH------
T ss_conf 8499999807899999986336624888704641337---------------------------------8989------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
+...+.+.+.+ .||+++.++.+.++. +++
T Consensus 74 ------------------------------------------------~~~~~~~~l~~-~GV~~~~~~~v~~~~--~~~ 102 (122)
T d1xhca2 74 ------------------------------------------------LSNMIKDMLEE-TGVKFFLNSELLEAN--EEG 102 (122)
T ss_dssp ------------------------------------------------HHHHHHHHHHH-TTEEEECSCCEEEEC--SSE
T ss_pred ------------------------------------------------HHHHHHHHHHH-CCCEEEECCEEEEEE--CCE
T ss_conf ------------------------------------------------99999999997-796999499999990--898
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECCCC
Q ss_conf 97559999999658994999982779996997
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLASGG 273 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg 273 (641)
+. .+++ .+.++.||+|+|-
T Consensus 103 -------v~----~~~~--~i~~D~vi~a~Gv 121 (122)
T d1xhca2 103 -------VL----TNSG--FIEGKVKICAIGI 121 (122)
T ss_dssp -------EE----ETTE--EEECSCEEEECCE
T ss_pred -------EE----ECCC--EEECCEEEEEEEE
T ss_conf -------99----6897--9988999997875
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=97.89 E-value=0.00014 Score=44.05 Aligned_cols=92 Identities=24% Similarity=0.254 Sum_probs=63.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 26899996079999999988669-86999715899995101358602104997889999999999565788999999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 161 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 161 (641)
-.|+|||||+.|+-+|..+++.| +|+++|+.+..-+. ..++
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~-------------------------------~~d~------- 72 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-------------------------------YLDK------- 72 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------------------------TCCH-------
T ss_pred CEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCC-------------------------------CCCH-------
T ss_conf 78999997187999999861045379999745721022-------------------------------1244-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCCC
Q ss_conf 78299999999859920358999732235798201314431687279999999999981999489854278887744899
Q 006532 162 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 241 (641)
Q Consensus 162 ~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~g 241 (641)
.+...+.+.+++ .|++++.++.+.++..+ +
T Consensus 73 -----------------------------------------------~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~--~ 102 (123)
T d1nhpa2 73 -----------------------------------------------EFTDVLTEEMEA-NNITIATGETVERYEGD--G 102 (123)
T ss_dssp -----------------------------------------------HHHHHHHHHHHT-TTEEEEESCCEEEEECS--S
T ss_pred -----------------------------------------------HHHHHHHHHHHC-CCEEEEECCEEEEEECC--C
T ss_conf -----------------------------------------------568999998604-88099937669999918--9
Q ss_pred CCCEEEEEEEEECCCCEEEEEECCEEEECC
Q ss_conf 975599999996589949999827799969
Q 006532 242 PDAVCHGVDTLNVETQEVVRFISKVTLLAS 271 (641)
Q Consensus 242 ~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 271 (641)
++..+. .+|+ .+.|+.||+|-
T Consensus 103 ---~~~~v~----~dg~--~i~~D~vi~aI 123 (123)
T d1nhpa2 103 ---RVQKVV----TDKN--AYDADLVVVAV 123 (123)
T ss_dssp ---BCCEEE----ESSC--EEECSEEEECS
T ss_pred ---CEEEEE----ECCC--EEECCEEEEEC
T ss_conf ---899999----6999--99979999979
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.79 E-value=0.00057 Score=40.11 Aligned_cols=97 Identities=21% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 2126899996079999999988669-869997158999951013586021049978899999999995657889999999
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 159 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 159 (641)
..-+|+|||||-+.+-.|+.|++.. +|.|+-+.+...+ .
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra----------------------------------~------ 72 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA----------------------------------S------ 72 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS----------------------------------C------
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCC----------------------------------C------
T ss_conf 798899973835889999988577971799984565562----------------------------------5------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECC
Q ss_conf 99782999999998599203589997322357982013144316872799999999999819994898542788877448
Q 006532 160 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 239 (641)
Q Consensus 160 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~ 239 (641)
..+.+++.+.++|+++.++.+.++.-++
T Consensus 73 ----------------------------------------------------~~~~~~l~~~~nI~v~~~~~v~~i~Gd~ 100 (130)
T d1vdca2 73 ----------------------------------------------------KIMQQRALSNPKIDVIWNSSVVEAYGDG 100 (130)
T ss_dssp ----------------------------------------------------HHHHHHHHTCTTEEEECSEEEEEEEESS
T ss_pred ----------------------------------------------------HHHHHCCCCCCCEEEEECCEEEEEECCC
T ss_conf ----------------------------------------------------5565212367865898566889997058
Q ss_pred CCCCCEEEEEEEEECCCCEEEEEECCEEEECC
Q ss_conf 99975599999996589949999827799969
Q 006532 240 DGPDAVCHGVDTLNVETQEVVRFISKVTLLAS 271 (641)
Q Consensus 240 ~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 271 (641)
.. ..+.++...+..+++..++.++.|++|.
T Consensus 101 ~~--~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 101 ER--DVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp SS--SSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred CC--CCEEEEEEEECCCCCEEEEECCEEEEEC
T ss_conf 76--6278999997899987999877999979
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=1e-05 Score=51.40 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHHC--C-CEEEEEECCCCCC
Q ss_conf 689999607999999998866--9-8699971589999
Q 006532 84 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHES 118 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~--G-~V~iiek~~~~~g 118 (641)
.|+|||+|+|||+||..|++. | +|+|+|+.+.++|
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG 40 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 40 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 19998953999999999995599785999937999883
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.77 E-value=0.00036 Score=41.39 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=63.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC----CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 26899996079999999988669----86999715899995101358602104997889999999999565788999999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 158 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G----~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 158 (641)
-.++|||||+.|+-+|..+...+ +|+|+++++..-. . .++
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-------~-------------------------~d~---- 64 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-------G-------------------------FDH---- 64 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-------T-------------------------SCH----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHC-------C-------------------------CCH----
T ss_conf 8699989867898998875632567847999942533320-------5-------------------------334----
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEEC
Q ss_conf 99978299999999859920358999732235798201314431687279999999999981999489854278887744
Q 006532 159 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 238 (641)
Q Consensus 159 ~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~ 238 (641)
.+...+.+.+++ .||+++.++.++++..+
T Consensus 65 --------------------------------------------------~~~~~l~~~l~~-~GV~v~~~~~v~~ie~~ 93 (117)
T d1aoga2 65 --------------------------------------------------TLREELTKQLTA-NGIQILTKENPAKVELN 93 (117)
T ss_dssp --------------------------------------------------HHHHHHHHHHHH-TTCEEEESCCEEEEEEC
T ss_pred --------------------------------------------------HHHHHHHHHHHH-CCCEEECCCEEEEEEEC
T ss_conf --------------------------------------------------799999999984-48579729889999996
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCEEEECC
Q ss_conf 899975599999996589949999827799969
Q 006532 239 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLAS 271 (641)
Q Consensus 239 ~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 271 (641)
+++ ++ .+. ..+|+ .+.|+.||+|-
T Consensus 94 ~~~---~~-~v~---~~~G~--~i~~D~Vi~AI 117 (117)
T d1aoga2 94 ADG---SK-SVT---FESGK--KMDFDLVMMAI 117 (117)
T ss_dssp TTS---CE-EEE---ETTSC--EEEESEEEECS
T ss_pred CCC---EE-EEE---ECCCC--EEEECEEEEEC
T ss_conf 997---39-999---88996--99909999969
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=5.4e-05 Score=46.76 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC---CEEEEEECCC
Q ss_conf 2126899996079999999988669---8699971589
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 115 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G---~V~iiek~~~ 115 (641)
.+++++|||||++|+.+|..|.+.+ +|+++++...
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~ 40 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE 40 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 87989999974999999999994399985899957877
|
| >d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.69 E-value=2.7e-05 Score=48.72 Aligned_cols=89 Identities=30% Similarity=0.429 Sum_probs=57.6
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 22342000389998898777776312420211799689819988554445322224863589999999999369975999
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLL 387 (641)
Q Consensus 308 ~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 387 (641)
+|+||+..... .+++++.+++.|+++||.+|+||++ |..+++.+++++..+. +...++.+
T Consensus 1 iQ~hPt~~~~~------------~~l~~e~~rg~G~IlVn~~G~RF~n------E~~~~~~~~~ai~~q~--~~~~~~I~ 60 (143)
T d1y0pa3 1 IQAHPTLSVKG------------GVMVTEAVRGNGAILVNREGKRFVN------EITTRDKASAAILAQT--GKSAYLIF 60 (143)
T ss_dssp EEEEEEEETTT------------CSBCCTHHHHTTCEEECTTSCCCSC------TTSCHHHHHHHHHTSG--GGCEEEEE
T ss_pred CCCCCCCCCCC------------CEEEEEHHCCCCEEEECCCCCCCCC------CCCCHHHHHHHHHHCC--CCCEEEEE
T ss_conf 91458763899------------7085001056884998876582001------6752868999999666--99728972
Q ss_pred ECCCC----CHHHHH-----HHCHHHHHHHHHCCCCCC
Q ss_conf 17899----965899-----458109999998199999
Q 006532 388 DISHK----PTEKIL-----SHFPNIAAECLKYGLDIT 416 (641)
Q Consensus 388 d~~~~----~~~~~~-----~~~~~~~~~~~~~G~d~~ 416 (641)
|.... ..+... .+..++.++..+.|+|+.
T Consensus 61 D~~~~~~~~~~~~~~~~g~~~~adtleeLA~~~gid~~ 98 (143)
T d1y0pa3 61 DDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGK 98 (143)
T ss_dssp EHHHHHHCTTHHHHHHHTCCCEESSHHHHHHHHTSCHH
T ss_pred CCHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHCCCHH
T ss_conf 43653122212321246732235839999998598978
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.0014 Score=37.64 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 126899996079999999988669-8699971589999510135860210499788999999999956578899999999
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (641)
.-+|+|||||-+++-.|+.|++.. +|.++-+.....+ ++.
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~----------------------------------~~~----- 67 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA----------------------------------EKI----- 67 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC----------------------------------CHH-----
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCC----------------------------------HHH-----
T ss_conf 98799988988999999997415782799862543340----------------------------------167-----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCC
Q ss_conf 97829999999985992035899973223579820131443168727999999999998199948985427888774489
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
+...+.+.... .++.++.++.+.++.-+ +
T Consensus 68 -------------------------------------------------~~~~~~~~~~~-~~i~~~~~~~v~~i~G~-~ 96 (126)
T d1trba2 68 -------------------------------------------------LIKRLMDKVEN-GNIILHTNRTLEEVTGD-Q 96 (126)
T ss_dssp -------------------------------------------------HHHHHHHHHHT-SSEEEECSCEEEEEEEC-S
T ss_pred -------------------------------------------------HHHHHHHHHCC-CCEEEECCEEEEEEECC-C
T ss_conf -------------------------------------------------99999975425-53057413699999878-8
Q ss_pred CCCCEEEEEEEEECCCCEE-EEEECCEEEECCC
Q ss_conf 9975599999996589949-9998277999699
Q 006532 241 GPDAVCHGVDTLNVETQEV-VRFISKVTLLASG 272 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~-~~i~Ak~VVlAtG 272 (641)
. .+.++...+..+++. ..+.++.|+++.|
T Consensus 97 ~---~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 97 M---GVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp S---SEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred C---CEEEEEEEECCCCCEEEEEECCEEEEEEC
T ss_conf 7---53899999779996589997899999969
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.58 E-value=0.0013 Score=37.69 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=27.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-C-EEEEEECC
Q ss_conf 126899996079999999988669-8-69997158
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~-V~iiek~~ 114 (641)
.-.|+|||||-.|+=+|..|.+.| + |.++.+..
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 98799988885399999999876774115999688
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.50 E-value=2.8e-05 Score=48.64 Aligned_cols=45 Identities=27% Similarity=0.256 Sum_probs=31.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC-----CCCCCCCCCCCCEE
Q ss_conf 6899996079999999988669-869997158-----99995101358602
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-----PHESNTNYAQGGVS 128 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~-----~~~g~s~~~~ggi~ 128 (641)
.|+|||+|++||++|+.|+++| +|+++|+.. ..+.+++...+++.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~~~~ts~~a~g~~ 52 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLW 52 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCTTSSSGGGSCCBC
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHCEE
T ss_conf 899999519999999999977997658865223256789887667621433
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.0053 Score=33.82 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHCCCCCEEECCEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEEECCEEEECCC
Q ss_conf 999999819994898542788877448999755999999965899499998277999699
Q 006532 213 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 272 (641)
Q Consensus 213 ~l~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtG 272 (641)
.+...+.. .+++++.++.+..+. ++| +.+. ..|+...+.|+.||+|+|
T Consensus 113 ~~~~~~~~-~gv~~~~~~~v~~i~--~~g-------v~~~--~~g~e~~i~aD~Vv~A~G 160 (162)
T d1ps9a2 113 IHRTTLLS-RGVKMIPGVSYQKID--DDG-------LHVV--INGETQVLAVDNVVICAG 160 (162)
T ss_dssp HHHHHHHH-TTCEEECSCEEEEEE--TTE-------EEEE--ETTEEEEECCSEEEECCC
T ss_pred HHHHHHHH-CCEEEEEEEEEEEEC--CCC-------CEEE--CCCEEEEEECCEEEECCC
T ss_conf 88887760-796999645787786--998-------8894--399379998999998778
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=97.15 E-value=0.00026 Score=42.33 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=34.0
Q ss_pred CCEEECCCCCCCCCCEEECCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7348689997326870232544677888--9982032316899999999989989
Q 006532 431 GGVRAGLQGETNVRGLYVAGEVACTGLH--GANRLASNSLLEALVFARRAVQPSI 483 (641)
Q Consensus 431 GGi~vD~~~~T~ipGLyAaGe~~~gg~~--Ga~rl~g~~l~~a~v~G~~Ag~~aa 483 (641)
+||.||+++||++|++||+|||+ ...+ +..+.+--....|...|+.|++++.
T Consensus 128 ~~I~vd~~~~ts~~~IyA~GD~a-~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil 181 (183)
T d1d7ya1 128 DGIFVDAYGRTTCPDVYALGDVT-RQRNPLSGRFERIETWSNAQNQGIAVARHLV 181 (183)
T ss_dssp SSEECCTTCBCSSTTEEECGGGE-EEECTTTCSEEECCCHHHHHHHHHHHHHHHH
T ss_pred CCEEECCCEECCCCCCCHHHHHH-CCCEEECCCEECHHHHHHHHHHHHHHHHHHC
T ss_conf 94996541002553420225564-3634307915005589999999999999870
|
| >d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.90 E-value=0.0018 Score=36.89 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=76.4
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCC-------CCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf 2234200038999889877777631242021179968981998855444-------53222--24863589999999999
Q 006532 308 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL-------YDERA--ELAPRDVVARSIDDQLK 378 (641)
Q Consensus 308 ~~~~p~~~~~~g~~~~p~~~~~~~~~~~~~~~~~g~~~vn~~g~rf~~~-------~~~~~--~~~~~~~~~~~~~~~~~ 378 (641)
..|.|.-+++...|+. ..+ ...++..+|..|++|+.+ |.+.+ .-.|..+-..++..++.
T Consensus 3 ~RFvp~RfKD~ygPvG------a~f------l~~Ka~~~Na~GE~Y~~~~~~~l~~~~~yg~~~~~pT~lRn~~~~~E~~ 70 (145)
T d1jnra3 3 HRFIPFRFKDGYGPVG------AWF------LFFKCKAKNAYGEEYIKTRAAELEKYKPYGAAQPIPTPLRNHQVMLEIM 70 (145)
T ss_dssp CCBCCEEETTTCCCCH------HHH------HTSCCCEECTTSCCHHHHTSGGGGGGTTGGGSSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCH------HHH------HHCCCEEECCCCCHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 5113131227747502------989------8527035306974376403787630024666788873798888999996
Q ss_pred HCCCCEEEEECCCCCH-------HHH-----------HHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCE
Q ss_conf 3699759991789996-------589-----------945810999999819999999744742002114734
Q 006532 379 KRNEKYVLLDISHKPT-------EKI-----------LSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGV 433 (641)
Q Consensus 379 ~~~~~~v~ld~~~~~~-------~~~-----------~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi 433 (641)
+++ +++|+|..+... +.+ +..-+....++...+++|.+.++||.+..-|.+||.
T Consensus 71 ~Gr-GPiym~T~~a~~~~~~~~~k~~k~le~eawedfLdM~~~qa~~Wa~~ni~P~~~~~EI~~tEPYi~GsH 142 (145)
T d1jnra3 71 DGN-QPIYMHTEEALAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWACQNIDPQEQPSEAAPAEPYIMGSH 142 (145)
T ss_dssp TTC-CCEEECHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTTSCEEEEECCCBBCSSS
T ss_pred CCC-CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCCEEECCC
T ss_conf 599-986886378788875411667788899999998647899999999839997867651216788572576
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.61 E-value=0.00086 Score=38.94 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=29.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCC
Q ss_conf 26899996079999999988669-86999715899
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 116 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~ 116 (641)
-+|+|||||++|+-+|..+++.| +|.|++.....
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~ 38 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT 38 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99999997599999999999769944999965754
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0026 Score=35.82 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=36.3
Q ss_pred CCCCEEECCC-----CCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1473486899-----9732687023254467788899820323168999999999899898531
Q 006532 429 MCGGVRAGLQ-----GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 429 ~~GGi~vD~~-----~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~ 487 (641)
..|.|.+|.. ++|+|||+||+|||+ +... | ....|.-.|.+|+..+-+|+.
T Consensus 133 ~~g~i~~~~~~~~~~~~T~v~gV~aaGDv~-~~~~---~----q~i~Aag~G~~AA~~a~~yl~ 188 (190)
T d1trba1 133 ENGYIKVQSGIHGNATQTSIPGVFAAGDVM-DHIY---R----QAITSAGTGCMAALDAERYLD 188 (190)
T ss_dssp ETTEECCCCSSSSCTTBCSSTTEEECGGGG-CSSS---C----CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCCCCCCEEEEEEEEC-CCCE---E----EEEEEECCHHHHHHHHHHHHH
T ss_conf 786899805876653215557499838741-7624---6----899994467899999999986
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.46 E-value=0.019 Score=30.22 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=28.5
Q ss_pred CCEEEE--CCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 268999--96079999999988669-8699971589
Q 006532 83 FDFSVI--GSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 83 ~DVlVI--GgG~AGl~AA~~aa~~G-~V~iiek~~~ 115 (641)
-.|+|+ |||.-|+.+|-.++++| +|+|+++...
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 726999659974799999999975996999943774
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0045 Score=34.29 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=68.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 126899996079999999988669-8699971589999510135860210499788999999999956578899999999
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 160 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~s~~~~ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 160 (641)
.|||+|||||++|+.||+.|++.| +|+|||+.. +|.... ...+.
T Consensus 1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~--gg~~~~-~~~~~-------------------------------- 45 (184)
T d1fl2a1 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF--GGQILD-TVDIE-------------------------------- 45 (184)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST--TGGGGG-CCEEC--------------------------------
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEEC--CCCCCC-CCCCE--------------------------------
T ss_conf 9739999967999999999998699489999715--886331-22000--------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEECCEEEEEEEECCC
Q ss_conf 97829999999985992035899973223579820131443168727999999999998199948985427888774489
Q 006532 161 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 240 (641)
Q Consensus 161 ~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~~g~~~~r~~~~~~~~g~~~~~~l~~~~~~~~gv~i~~~~~v~~l~~~~~ 240 (641)
.++. .....+..+...+...+.+ .++++.....+..+.....
T Consensus 46 --------------~~~~-----------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 87 (184)
T d1fl2a1 46 --------------NYIS-----------------------VPKTEGQKLAGALKVHVDE-YDVDVIDSQSASKLIPAAV 87 (184)
T ss_dssp --------------CBTT-----------------------BSSEEHHHHHHHHHHHHHT-SCEEEECSCCEEEEECCSS
T ss_pred --------------ECCC-----------------------CCHHHHHHHHHHHHHHHHH-EECEEECCCEEEEECCCCC
T ss_conf --------------0144-----------------------3122567877889887652-0010002402443012222
Q ss_pred CCCCEEEEEEEEECCCCEEEEEECCEEEECCCCCC
Q ss_conf 99755999999965899499998277999699778
Q 006532 241 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 275 (641)
Q Consensus 241 g~~~~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGg~~ 275 (641)
. ........ .... .+.++.+++++|...
T Consensus 88 ~--~~~~~~~~---~~~~--~~~~~~~~~~~g~~~ 115 (184)
T d1fl2a1 88 E--GGLHQIET---ASGA--VLKARSIIVATGAKL 115 (184)
T ss_dssp T--TCCEEEEE---TTSC--EEEEEEEEECCCEEE
T ss_pred C--CCEEEEEE---ECCE--EEECCCCCCCCCCCC
T ss_conf 3--41011353---1110--231122110012223
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.22 E-value=0.0042 Score=34.44 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=35.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCC
Q ss_conf 32126899996079999999988669-86999715899995
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 119 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g~ 119 (641)
..+|||||+|.|..=...|..|++.| +|+-+|+..+-||.
T Consensus 4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~ 44 (491)
T d1vg0a1 4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGN 44 (491)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 87567899798859999999998669979984598767775
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=96.19 E-value=0.0021 Score=36.48 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=28.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CEEEEEECCC
Q ss_conf 6899996079999999988669---8699971589
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G---~V~iiek~~~ 115 (641)
.|+|||||++|+.+|..+.+.+ +|+|+|+.+.
T Consensus 4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 59999962999999999997198986899977774
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.15 E-value=0.0016 Score=37.24 Aligned_cols=41 Identities=32% Similarity=0.286 Sum_probs=33.5
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 973268702325446778889982032316899999999989989853104
Q 006532 439 GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 489 (641)
Q Consensus 439 ~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~~~ 489 (641)
++|++||||+|||+. +| .++..|+..|+.|++.+.+|+...
T Consensus 332 ~~t~~pglf~aGd~~-~g---------~~~~~A~~~G~~aA~~i~~~L~~~ 372 (373)
T d1seza1 332 MEKNLPGLFYAGNHR-GG---------LSVGKALSSGCNAADLVISYLESV 372 (373)
T ss_dssp HHHHSTTEEECCSSS-SC---------SSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCEEEEECCC-CC---------HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 478999999972578-76---------539999999999999999987528
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.12 E-value=0.0037 Score=34.80 Aligned_cols=53 Identities=19% Similarity=0.046 Sum_probs=34.3
Q ss_pred CCCEEECCCCCCCCCCEEECCCCCCCCCC-CCCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 47348689997326870232544677888-99820-32316899999999989989
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLH-GANRL-ASNSLLEALVFARRAVQPSI 483 (641)
Q Consensus 430 ~GGi~vD~~~~T~ipGLyAaGe~~~gg~~-Ga~rl-~g~~l~~a~v~G~~Ag~~aa 483 (641)
.|+|.||+++||++|++||+|||+. ... -.++. .--....|.-.|+.|+++++
T Consensus 129 ~~~i~Vd~~~~ts~~~vya~GD~~~-~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~ 183 (185)
T d1q1ra1 129 DNGIVINEHMQTSDPLIMAVGDCAR-FHSQLYDRWVRIESVPNALEQARKIAAILC 183 (185)
T ss_dssp SSSEECCTTSBCSSTTEEECGGGEE-EEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHCCHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 4861267742356365411501214-641237864513069999999999999746
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.003 Score=35.36 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=35.5
Q ss_pred CCCEEECCCCCCCCCCEEECCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4734868999732687023254467788899-820323168999999999899898
Q 006532 430 CGGVRAGLQGETNVRGLYVAGEVACTGLHGA-NRLASNSLLEALVFARRAVQPSID 484 (641)
Q Consensus 430 ~GGi~vD~~~~T~ipGLyAaGe~~~gg~~Ga-~rl~g~~l~~a~v~G~~Ag~~aa~ 484 (641)
.|+|+||+++||+ |++||+|||+ ...+.. .+..=-....|...|+.||++++.
T Consensus 154 ~~~i~vd~~l~~~-~~VyA~GD~a-~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g 207 (213)
T d1m6ia1 154 FGGFRVNAELQAR-SNIWVAGDAA-CFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 207 (213)
T ss_dssp TCSEECCTTCEEE-TTEEECGGGE-EEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCCC-CCEEEEEEEE-EECCCCCCCEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 3444436752868-7529950046-4023557847862749999999999999659
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.45 E-value=0.0063 Score=33.32 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=27.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 26899996079999999988669-869997158
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
..|+|||||++|+.+|..+++.| +|.|++...
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~ 36 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGD 36 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 999999962999999999996699359999826
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.34 E-value=0.06 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=37.0
Q ss_pred CCCEEECCEEEEEEEECCCCCCCEEEEEEEEEC------------CCCEEEEEECCEEEECCC
Q ss_conf 994898542788877448999755999999965------------899499998277999699
Q 006532 222 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV------------ETQEVVRFISKVTLLASG 272 (641)
Q Consensus 222 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~------------~~g~~~~i~Ak~VVlAtG 272 (641)
.++.+.+.....+++.++++ .++.++.+... .+|+.+.+.|+.||.|.|
T Consensus 164 ~~i~~~f~~~p~~i~~~~~g--~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiG 224 (225)
T d1cjca1 164 RAWGLRFFRSPQQVLPSPDG--RRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIG 224 (225)
T ss_dssp EEEEEECSEEEEEEEECTTS--SSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCC
T ss_pred CCEEEEEECCCCCCCCCCCC--CEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEECCC
T ss_conf 43178860244301036888--76889999996887889877532799579998999997878
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.20 E-value=0.0095 Score=32.14 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=27.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 689999607999999998866986999715899
Q 006532 84 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPH 116 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G~V~iiek~~~~ 116 (641)
.|+|||||++|+-+|..+++.++|+|+++.+.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~ 34 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVP 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSC
T ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 699999739999999999769988999636655
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.13 E-value=0.011 Score=31.87 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 126899996079999999988669-8699971589
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~ 115 (641)
...|+|||+|.+|+.||..|...| .|.++|....
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 72899985868999999999986998999850478
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.08 E-value=0.011 Score=31.65 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.5
Q ss_pred CCEEECCCCCCCCCCEEECCCCC
Q ss_conf 73486899973268702325446
Q 006532 431 GGVRAGLQGETNVRGLYVAGEVA 453 (641)
Q Consensus 431 GGi~vD~~~~T~ipGLyAaGe~~ 453 (641)
++|.+|.++||+.|++||+|||+
T Consensus 118 ~~i~v~~~~~t~~~~i~aiGD~~ 140 (167)
T d1xhca1 118 RGILIDDNFRTSAKDVYAIGDCA 140 (167)
T ss_dssp SSEECCTTSBCSSTTEEECGGGE
T ss_pred CCEEECCCCEECCCCEEEEEECC
T ss_conf 81354023274678828810114
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.98 E-value=0.013 Score=31.17 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 2126899996079999999988669-869997158
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
....|+|||+|.+|+.|+..|.+.| .|.++|...
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 87079998888599999999740898999973768
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.069 Score=26.56 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCC
Q ss_conf 26899996079999999988669-8699971589999
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 118 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~~~g 118 (641)
-.|+|+|.|.+|+++|..|.++| +|.+.|.......
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~ 42 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG 42 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTT
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCHH
T ss_conf 9999996789999999999977998999608768255
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.44 E-value=0.031 Score=28.87 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 6899996079999999988669-8699971589
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~ 115 (641)
.|+|||+|..|...|..|++.| +|+|+++...
T Consensus 4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~ 36 (182)
T d1e5qa1 4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE 36 (182)
T ss_dssp EEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 799987879999999999849797999989747
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.55 E-value=0.063 Score=26.83 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 6899996079999999988669-869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.+.|||+|..|+..|..++++| +|.++++..
T Consensus 3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 89998966999999999998899799998999
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.14 Score=24.49 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=32.3
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999732687023254467788899820323168999999999899898531
Q 006532 437 LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 487 (641)
Q Consensus 437 ~~~~T~ipGLyAaGe~~~gg~~Ga~rl~g~~l~~a~v~G~~Ag~~aa~~~~ 487 (641)
...+++++|||.|||.++.+..| .+-.|+.+|.+|++.++++..
T Consensus 405 ~~~~~~~~~l~fAGe~t~~~~~g-------~~~GA~~SG~~aA~~Il~~~~ 448 (449)
T d2dw4a2 405 PGAPQPIPRLFFAGEHTIRNYPA-------TVHGALLSGLREAGRIADQFL 448 (449)
T ss_dssp -----CCCCEEECSGGGCTTSCS-------SHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCEEEECCCCCCCCCE-------EHHHHHHHHHHHHHHHHHHHC
T ss_conf 01058889789980893799960-------069999999999999999754
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.55 E-value=0.1 Score=25.40 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 126899996079999999988669-869997158
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.-.|||||||..|+..|..+.+.| +|+|+....
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~ 46 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9879998979999999999997899799991889
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.53 E-value=0.13 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=29.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 6899996079999999988669-869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.|+|+|+|.-|...|..|.+.| .|+++|+.+
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEECCCH
T ss_conf 89998988999999999997799720021784
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=89.82 E-value=0.16 Score=24.15 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEEC
Q ss_conf 126899996079999999988669-86999715
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~ 113 (641)
..+|+|+|+|.|+-++++.|.+.| ++.|+.|.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt 50 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 50 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 998999897589899999861552379731321
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=89.30 E-value=0.23 Score=23.21 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=28.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 6899996079999999988669-869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.|.|||+|.-|..-|..++..| +|.++|...
T Consensus 6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 89998969899999999996899699997977
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=89.02 E-value=0.23 Score=23.22 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 6899996079999999988669-8699971589
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 115 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~~ 115 (641)
.|+|||+|.-|...|..|++.| +|.++++...
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 899999589999999999987994599970778
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.99 E-value=0.22 Score=23.36 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=28.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 26899996079999999988669-869997158
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
-.|.|||+|.-|..-|..++..| .|+++|...
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 899998968899999999995899179997874
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=88.80 E-value=0.29 Score=22.54 Aligned_cols=31 Identities=32% Similarity=0.451 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 6899996079999999988669-869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.++|||.|.-|...|..|.+.| .|+++|+.+
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 79998988999999999998799189943708
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=88.75 E-value=0.28 Score=22.58 Aligned_cols=33 Identities=18% Similarity=0.095 Sum_probs=28.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 126899996079999999988669-869997158
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
...|+|||+|..|..-|..+.+.| +|+++....
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9879998788999999999987799699982557
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.29 E-value=0.5 Score=20.97 Aligned_cols=35 Identities=6% Similarity=-0.116 Sum_probs=28.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 32126899996079999999988669-869997158
Q 006532 80 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 80 ~~~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
-..-+|+|||+|.+|+-.|..+++.+ +|+++.+..
T Consensus 30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECC
T ss_conf 599769998889879999999997559899999648
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.84 E-value=0.28 Score=22.65 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCC
Q ss_conf 2126899996079999999988669--86999715899995101
Q 006532 81 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNY 122 (641)
Q Consensus 81 ~~~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~~~~g~s~~ 122 (641)
....|+|||.|.-|..+|..|++.| ++.|+|.+...-++..+
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~R 72 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQR 72 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGT
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 67989998978899999999998499868998884302114333
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=87.41 E-value=0.36 Score=21.87 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=27.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 6899996079999999988669-869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.|+|+|+|+-|+.++..|...| +|++++...
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCHHH
T ss_conf 89998206644233766766202310132077
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.38 E-value=0.37 Score=21.86 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=26.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 6899996079999999988669--869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~ 114 (641)
.|+|+|+|+-|+.++..|...| +|+++|...
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCEEEECCCCH
T ss_conf 899988884189999999873982587406998
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=87.16 E-value=0.29 Score=22.49 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEEC
Q ss_conf 126899996079999999988669--86999715
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~ 113 (641)
...|+|+|+|.++-++++.|.+.| ++.|+.|.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~ 50 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN 50 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9969998987899999999997799889996332
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.10 E-value=0.35 Score=21.97 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=27.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 6899996079999999988669-869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.|+|+|+|+-|+.++..+...| +|++++..+
T Consensus 30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCH
T ss_conf 99997888762157887651132100112211
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.60 E-value=0.26 Score=22.78 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=28.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 6899996079999999988669-869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.|.|||.|--|+..|..++++| +|+.+|...
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 89998988849999999995899389996988
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=86.31 E-value=0.28 Score=22.67 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=27.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEEC
Q ss_conf 26899996079999999988669-86999715
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~ 113 (641)
..|.|||+|.-|.+.|..+++.| +|.|..+.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 56999998999999999999759968999925
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.31 E-value=0.43 Score=21.40 Aligned_cols=31 Identities=29% Similarity=0.239 Sum_probs=25.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEEC
Q ss_conf 26899996079999999988669--86999715
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~ 113 (641)
-.|+|+|+|+-|+.++..+...| +|++++..
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~ 59 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLN 59 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 999998958789999999976056541453041
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.51 E-value=0.53 Score=20.84 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=27.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 6899996079999999988669-869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
.|+|+|+|+-|+.++..|...| +|+++++.+
T Consensus 30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEECCHH
T ss_conf 89994156017899999987398651220104
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=85.50 E-value=0.54 Score=20.77 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 632126899996079999999988669--869997158
Q 006532 79 SVKYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 79 ~~~~~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~ 114 (641)
..+...|.|||+|.-|...|+.++..+ +++|+|...
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 45788489989888899999999837986399997416
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=85.21 E-value=0.57 Score=20.60 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=28.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 126899996079999999988669--869997158
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~ 114 (641)
...|+|+|+|.++-+++..+.+.| ++.|+.+..
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 52 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 99899989748999999998644873676423306
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=84.42 E-value=0.51 Score=20.91 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=26.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 26899996079999999988669--869997158
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~ 114 (641)
-.|+|+|+|+-|+.+...|...| +|++++..+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CEEEEECCCCCCHHHEECCCCCCCCCCCCCCCCC
T ss_conf 9999989986522220223333232212333322
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=83.95 E-value=0.69 Score=20.09 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=26.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEEC
Q ss_conf 26899996079999999988669--86999715
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 113 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~ 113 (641)
-.|+|+|+|+-|+.++..+...| +|++++..
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR 61 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 989997477502444554302223222100210
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=83.72 E-value=0.69 Score=20.08 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=26.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 26899996079999999988669-869997158
Q 006532 83 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 114 (641)
Q Consensus 83 ~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~~ 114 (641)
-.|+|+|+|+-|+.++..|...| ++++++...
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCHHHCCCH
T ss_conf 999996662388999998640332100101305
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.51 E-value=0.49 Score=21.07 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=26.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CEEEEEEC
Q ss_conf 6899996079999999988669-86999715
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~ 113 (641)
.|.|||+|.-|.+-|..+++.| +|.|..+.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 8999997999999999999889989999735
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.40 E-value=0.62 Score=20.40 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 6899996079999999988669--869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~ 114 (641)
-|+|+|+|+-|+.+...+...| +|+++|...
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 999988772658899999974984589843717
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.43 E-value=0.71 Score=20.00 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=25.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 6899996079999999988669--869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~ 114 (641)
.|+|+|+|+.|+.++..++..| +|+.++..+
T Consensus 31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~ 63 (175)
T d1cdoa2 31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP 63 (175)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCHHEEECCHH
T ss_conf 999983688500689999997402120243547
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=82.36 E-value=0.72 Score=19.97 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-C-EEEEEECC
Q ss_conf 6899996079999999988669-8-69997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~-V~iiek~~ 114 (641)
.|+|+|+|+-|+.++..+...| + |++.+...
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 999977770788899999983884366543524
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.44 E-value=0.82 Score=19.60 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCC
Q ss_conf 126899996079999999988669--86999715899995
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 119 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~~~~g~ 119 (641)
...|+|||+|.-|...|..|+..| ++.|+|.+...-.+
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sN 76 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSN 76 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
T ss_conf 6969998978899999999998399769999799956312
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=81.38 E-value=0.62 Score=20.39 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=27.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC-CEEEEEEC
Q ss_conf 126899996079999999988669-86999715
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G-~V~iiek~ 113 (641)
...|+|+|+|.++-+++..+.+.+ +|.|+.|.
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~ 50 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 50 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHCCCCCEEEECCCH
T ss_conf 997999897399999999870467456523633
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.98 E-value=0.86 Score=19.46 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=25.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 6899996079999999988669--869997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G--~V~iiek~~ 114 (641)
-|+|+|+|..|+.++..++..| +|++++...
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~ 63 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK 63 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 999988987078999999974983577643727
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=80.87 E-value=0.9 Score=19.32 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=27.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC---CEEEEEEC
Q ss_conf 126899996079999999988669---86999715
Q 006532 82 YFDFSVIGSGVAGLCYALEVAKHG---TVAVITKA 113 (641)
Q Consensus 82 ~~DVlVIGgG~AGl~AA~~aa~~G---~V~iiek~ 113 (641)
...|.|||+|--|...|+.++.+| .++|+|..
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~ 39 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 97799989888899999999956977379986302
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.84 E-value=0.062 Score=26.87 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=8.6
Q ss_pred EECCEEEECCCCCC
Q ss_conf 98277999699778
Q 006532 262 FISKVTLLASGGAG 275 (641)
Q Consensus 262 i~Ak~VVlAtGg~~ 275 (641)
+.+++||+|||...
T Consensus 138 ~~~d~vviAtG~~~ 151 (233)
T d1djqa3 138 YGADKVIIATGASE 151 (233)
T ss_dssp SCCSEEEECCCEEC
T ss_pred HCCCEEEECCCCCC
T ss_conf 21002444367775
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.31 E-value=0.79 Score=19.69 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=25.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-C-EEEEEECC
Q ss_conf 6899996079999999988669-8-69997158
Q 006532 84 DFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 114 (641)
Q Consensus 84 DVlVIGgG~AGl~AA~~aa~~G-~-V~iiek~~ 114 (641)
.|+|+|+|+-|+.+...+...| + |++++...
T Consensus 30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEECCCCHH
T ss_conf 999987771658999999981985123127817
|