Citrus Sinensis ID: 006803

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
MDARRVSQVVPKVRQVGFVTHSDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSENLSHLRSAAVAVPESSSRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFGRNSSGKFSAGSSFPGGGFDLTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLVR
cccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHHcccccEEEEcccHHcccccHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHcc
ccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccHHcccccccccccccccccccccccccccccccEccccccccccccccccccccccHccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHccccHHccccccccccccEEHHccccccccccccccHHHHHcccccccHHHHHHHHHHHcccEccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHcHHEHcHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccccHHHHcEEEEEEEc
mdarrvsqvvpkvrqvgfvthsdpnpppqasraqsvpiesnsgtpsdspdfspvmippprhhsenlshLRSAAvavpesssrrpmwddRVAVVGsynpgnsllgqpvspnssevnseasttlgwfgrnssgkfsagssfpgggfdltTVKMEnftqlegkkpeavpergggaaVEVHnevssstakAKTTKAERRAMQEAQRAAKAAtkgkgggggvevnnresssntlkAKTTKAERRETQEAQRAAKAAGkaqgnkpvaaaggagpgnilrqpsqnrddpavgstiagsdrrggdrppererkkdvppprmqfddqgrvnkskkravfnqpeakNRVELFRhlpqyehgsqltdLESKFLELDSMHPAVYKVGVQYlagdvtggNARCIAMLRAFQEVIndystppgktlVRDLTAKISSYVSFLIecrplsmsmgNAIRFQKSRiaklpltlsETEAKAALCNDIDRFINEKIILADKVIVRHAatkvrdgdvlLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGAssvlsngttysrVGTACVAMVAHAFRVPVLICCEaykfhervqldsicsneLGMLVLVLVR
mdarrvsqvvpkvrqvgfvthsdpnpppqasRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSENLSHLRSAAVavpesssrrpmWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFGRNSSGKFSAGSSFPGGGFDLTTVKMENFTQLegkkpeavpeRGGGAavevhnevssstakakttkaERRAMQEAQRAAKaatkgkgggggvevnnresssntlkakttkaerRETQEAQRAAKaagkaqgnkpvAAAGGAGPGNIlrqpsqnrddpavgstiagsdrrggdrppererkkdvppprmqfddqgrvnkskkravfnqpeaknrVELFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVrhaatkvrdgdvlLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQldsicsnelgMLVLVLVR
MDARRVSQVVPKVRQVGFVTHSDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSENLSHLRSAAVAVPESSSRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFGRNssgkfsagssfpgggfDLTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVssstakakttkaerramqeaqraakaatkgkgggggvevnnreSSSNTLKAKTTkaerretqeaqraakaagkaqGNKPVaaaggagpgNILRQPSQNRDDPAVGSTIAGSdrrggdrppererKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLVR
******************************************************************************************AVV******************************W***********************************************************************************************************************************************************************************************************************ELFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLV*
******S**VPKVRQVGFVT************************************PPPRHHSEN***********************************************************************************************************************************************************************************************************************************************************************************LFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLVR
********VVPKVRQVGFVTHS***************************DFSPVMIPPPRHHSENLSHL**************PMWDDRVAVVGSYNPGNSLLGQ**************TTLGWFGRNSSGKFSAGSSFPGGGFDLTTVKMENFTQLE**********************************************************VEVN******************************************AGGAGPGNILRQPSQNRDDPAVGS***********************PPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLVR
*******QVVPKVRQVGFVTHS*********************************IP********LSHLRSAAVAVPESSSRRPMWDDRVAVVGSYNPGNSLLG***************************************************************************************************************************************************************************************************************************************KNRVELFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLVR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDARRVSQVVPKVRQVGFVTHSDPNPPPQASRAQSVPIESNSGTPSDSPDFSPVMIPPPRHHSENLSHLRSAAVAVPESSSRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFGRNSSGKFSAGSSFPGGGFDLTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVLVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query630 2.2.26 [Sep-21-2011]
P41111523 Translation initiation fa yes no 0.563 0.678 0.443 2e-82
Q9UI10523 Translation initiation fa yes no 0.561 0.676 0.446 9e-82
Q3T058524 Translation initiation fa yes no 0.557 0.669 0.444 1e-80
Q61749524 Translation initiation fa yes no 0.563 0.677 0.433 1e-80
Q63186524 Translation initiation fa yes no 0.565 0.679 0.431 2e-80
Q09924467 Probable translation init yes no 0.406 0.548 0.5 1e-73
Q54FM3619 Translation initiation fa yes no 0.503 0.512 0.446 1e-72
P12754 651 Translation initiation fa yes no 0.436 0.422 0.422 2e-58
O57947324 Putative translation init yes no 0.304 0.592 0.29 4e-19
Q9V281324 Putative translation init yes no 0.320 0.623 0.278 5e-19
>sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 Back     alignment and function desciption
 Score =  307 bits (786), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/390 (44%), Positives = 237/390 (60%), Gaps = 35/390 (8%)

Query: 235 KAERRETQEAQRAAKAAGKA-QGNKPVAAAGGAGPGNILRQPSQNRDDPAVGSTIAGSDR 293
           +AERR  QEA+RA K A K  QG  P                      P    + AG   
Sbjct: 100 RAERRAKQEAERALKQARKGEQGGPP----------------------PQASPSTAGEAP 137

Query: 294 RGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFRHLPQYEHGSQ 353
            GG R  E  +  D   P +    +  V KS+++ V  + +  ++V LF HLPQY   + 
Sbjct: 138 AGGKRLTEHTQADD---PTLL---RRLVRKSERQQVPTRKDYGSKVSLFSHLPQYSRQNS 191

Query: 354 LTDLESKFLELDS--MHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKT 411
           LT    +++ + S  +HPA+ ++G+QY  G ++G NARCIA+LRA Q+VI DY+TPP + 
Sbjct: 192 LT----QYMSIPSSVIHPAMVRLGLQYSQGLISGSNARCIALLRALQQVIQDYTTPPNEE 247

Query: 412 LVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRF 471
           L RDL  K+  Y+ FL +CRPLS SM NAI+F    I  +  T  E EAKA L    DR+
Sbjct: 248 LSRDLVNKLKPYICFLTQCRPLSASMYNAIKFLNKEITGVSSTKREEEAKAELQAAADRY 307

Query: 472 INEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKH 531
           + EKI+LA + I+R A+ K+ +GDV+L YG S +V  IL  A   G++FRVVVVDSRP+ 
Sbjct: 308 VQEKIVLAAQAILRFASKKISNGDVILVYGCSSLVSRILQEAWSEGRKFRVVVVDSRPRL 367

Query: 532 EGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVA 591
           EG+ +LR L+  G+  +Y  I A SY++ EV++V LGA ++L+NG+  SRVGTA +A+VA
Sbjct: 368 EGRHMLRFLVRAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVA 427

Query: 592 HAFRVPVLICCEAYKFHERVQLDSICSNEL 621
            A  VPVL+CCE YKF ERVQ D+  SNEL
Sbjct: 428 RAHNVPVLVCCETYKFCERVQTDAFVSNEL 457
Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Oryctolagus cuniculus (taxid: 9986)
>sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 Back     alignment and function description
>sp|Q3T058|EI2BD_BOVIN Translation initiation factor eIF-2B subunit delta OS=Bos taurus GN=EIF2B4 PE=2 SV=1 Back     alignment and function description
>sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=2 SV=2 Back     alignment and function description
>sp|Q63186|EI2BD_RAT Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 Back     alignment and function description
>sp|Q09924|EI2BD_SCHPO Probable translation initiation factor eIF-2B subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif224 PE=1 SV=1 Back     alignment and function description
>sp|Q54FM3|EI2BD_DICDI Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1 Back     alignment and function description
>sp|P12754|EI2BD_YEAST Translation initiation factor eIF-2B subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD2 PE=1 SV=1 Back     alignment and function description
>sp|O57947|EI2B2_PYRHO Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0208 PE=3 SV=1 Back     alignment and function description
>sp|Q9V281|EI2B2_PYRAB Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=aIF-2BII PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
255541846664 translation initiation factor 2b, delta 0.907 0.861 0.642 0.0
449440905651 PREDICTED: translation initiation factor 0.907 0.878 0.593 0.0
359490928649 PREDICTED: translation initiation factor 0.904 0.878 0.617 0.0
225451956650 PREDICTED: translation initiation factor 0.892 0.864 0.620 0.0
449440897643 PREDICTED: translation initiation factor 0.896 0.878 0.595 0.0
356516904624 PREDICTED: translation initiation factor 0.849 0.857 0.576 0.0
356551080659 PREDICTED: translation initiation factor 0.912 0.872 0.577 0.0
224127602634 predicted protein [Populus trichocarpa] 0.869 0.864 0.584 0.0
356573663660 PREDICTED: translation initiation factor 0.909 0.868 0.587 1e-177
298204381492 unnamed protein product [Vitis vinifera] 0.647 0.829 0.756 1e-176
>gi|255541846|ref|XP_002511987.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] gi|223549167|gb|EEF50656.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/641 (64%), Positives = 472/641 (73%), Gaps = 69/641 (10%)

Query: 1   MDARRVSQVVPKVRQVGFVTHSDPNPPPQASRAQSVPIESNSGTPSDSP---DFSPVMIP 57
           MD RR  + VPKVRQVGF T   PN PP  SR QS P ++ S   S+SP     SPVMIP
Sbjct: 1   MDNRRGYRAVPKVRQVGFFT---PNEPPAPSRTQSGPPDATSPPLSNSPASNSLSPVMIP 57

Query: 58  PPRHHSENLSHLRSAAVAVPESSS-RRPMWD-DRVAVVGSYNPGNSLL--GQPVSPNSS- 112
           PPRH S++L+H  ++ + VPESS+ RRPM   + V V+GSYNP  SLL    P++  SS 
Sbjct: 58  PPRHLSDSLAHRATSPLPVPESSAFRRPMTGGEHVPVIGSYNPTESLLVVSPPLTSPSSR 117

Query: 113 ---------EVNSEASTTLGWFGRNSSGKFSAGSSFPGGGFDLTTVKMENFTQLEGKKPE 163
                    E+ SE S+  GWF R++S KF+A SSFPGGGFDLT++K      ++ KK  
Sbjct: 118 VDGGGDGDGELFSEESSP-GWFRRSNSAKFAA-SSFPGGGFDLTSIKSSEV--VDAKKKP 173

Query: 164 AVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKAATKGKGGGGGVEVNNRE 223
            V + GG     + NE++ S                                        
Sbjct: 174 VVEKSGGADGTVLQNELALS---------------------------------------- 193

Query: 224 SSSNTLKAKTTKAERRETQEAQRAAKAA--GKAQGNKPVAAAGGAGPGNILRQPSQNRDD 281
            SS  LKAKTTKAERR  QE+QRAAKAA  G+A G     + G + P    +QP Q +D 
Sbjct: 194 -SSKPLKAKTTKAERRALQESQRAAKAASKGEATGKPSTISEGASKPAK--QQPPQKKDA 250

Query: 282 PAVGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVEL 341
           P    +IA S+R+G DRP E+ERKKDVP PRMQFDD+ RV K+K+RAV NQ EA+NRVEL
Sbjct: 251 PPSAPSIAASERKGVDRPSEKERKKDVPQPRMQFDDKNRVEKAKRRAVVNQTEARNRVEL 310

Query: 342 FRHLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVI 401
           FRHLPQYEHG+QL DLESKF +LD MHPAV KVG+QYLAGD++GGNARCIAML AFQE I
Sbjct: 311 FRHLPQYEHGTQLPDLESKFFQLDLMHPAVCKVGLQYLAGDISGGNARCIAMLLAFQEAI 370

Query: 402 NDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAK 461
            DYSTPP K+L RDLTAKI+SYVSFLIECRPLSMSMGNAIRF KSRIA  P+T +E+EAK
Sbjct: 371 KDYSTPPEKSLTRDLTAKINSYVSFLIECRPLSMSMGNAIRFLKSRIANFPITFAESEAK 430

Query: 462 AALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFR 521
           A+LC+DIDRFINEKI+LADKVIVRHAA+KVRDGDVLLTYGSSCVVEMILLYAHELGKQFR
Sbjct: 431 ASLCSDIDRFINEKILLADKVIVRHAASKVRDGDVLLTYGSSCVVEMILLYAHELGKQFR 490

Query: 522 VVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSR 581
           VV+VD+RPK EGQALLRRL+AKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGT YSR
Sbjct: 491 VVIVDARPKLEGQALLRRLVAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTVYSR 550

Query: 582 VGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELG 622
           VGTACVAMVAHAF VPVL+CCEAYKFHERVQLDSICSNELG
Sbjct: 551 VGTACVAMVAHAFHVPVLVCCEAYKFHERVQLDSICSNELG 591

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440905|ref|XP_004138224.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] gi|449477110|ref|XP_004154932.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359490928|ref|XP_002275165.2| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera] gi|297734159|emb|CBI15406.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225451956|ref|XP_002283177.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449440897|ref|XP_004138220.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] gi|449477114|ref|XP_004154933.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516904|ref|XP_003527132.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|356551080|ref|XP_003543906.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|224127602|ref|XP_002329318.1| predicted protein [Populus trichocarpa] gi|222870772|gb|EEF07903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356573663|ref|XP_003554977.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|298204381|emb|CBI16861.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
TAIR|locus:2159868642 AT5G38640 "AT5G38640" [Arabido 0.619 0.607 0.674 2.5e-149
TAIR|locus:2028501666 AT1G48970 "AT1G48970" [Arabido 0.504 0.477 0.729 7.5e-148
UNIPROTKB|Q2QM52607 LOC_Os12g42260 "Initiation fac 0.504 0.523 0.783 2.8e-137
TAIR|locus:2051779333 AT2G44070 "AT2G44070" [Arabido 0.406 0.768 0.789 5.7e-107
ZFIN|ZDB-GENE-030131-955541 eif2b4 "eukaryotic translation 0.492 0.573 0.496 2.5e-77
UNIPROTKB|F1NDW0503 EIF2B4 "Uncharacterized protei 0.492 0.616 0.488 2.5e-74
UNIPROTKB|A8JGW6434 EIF2B "Eukaryotic initiation f 0.450 0.654 0.536 4.6e-73
UNIPROTKB|P41111523 EIF2B4 "Translation initiation 0.474 0.571 0.495 1.4e-71
DICTYBASE|DDB_G0290759619 eif2b4 "eIF2B GDP-GTP exchange 0.487 0.495 0.453 5.3e-71
MGI|MGI:95300524 Eif2b4 "eukaryotic translation 0.474 0.570 0.481 9.9e-71
TAIR|locus:2159868 AT5G38640 "AT5G38640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1350 (480.3 bits), Expect = 2.5e-149, Sum P(2) = 2.5e-149
 Identities = 269/399 (67%), Positives = 312/399 (78%)

Query:   229 LKAKTTXXXXXXXXXXXXXXXXXXXXXGNK--PVXXXXXXXXXNILRQPSQ---NRDDPA 283
             LK KTT                     G K  PV             +P++    ++D A
Sbjct:   178 LKEKTTKAERRAIQEAQRAAKAAAKADGGKVAPVSSASVASTSVKAAKPAKATSQKNDVA 237

Query:   284 VGSTIAGSXXXXXXXXXXXXXKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFR 343
             V +  A               KKD P PRMQ+DD+ RV K+K+RAV  Q EAKNRVELFR
Sbjct:   238 VATGAAEKKGGPSEKDR----KKDAPHPRMQYDDESRVVKAKRRAVVKQTEAKNRVELFR 293

Query:   344 HLPQYEHGSQLTDLESKFLELDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVIND 403
             HLPQYEHG+QL DLE+KF +LD MHPAVYKVG+QYL+GD++GGNARCIAML+AFQEV+ D
Sbjct:   294 HLPQYEHGTQLPDLETKFFQLDPMHPAVYKVGLQYLSGDISGGNARCIAMLQAFQEVVKD 353

Query:   404 YSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAA 463
             YSTPP K+L RD+TAKISSYVSFLIECRPLS+SMGNAIRF K+RIAKLP+TLSE+EAKA 
Sbjct:   354 YSTPPEKSLNRDMTAKISSYVSFLIECRPLSISMGNAIRFVKNRIAKLPITLSESEAKAT 413

Query:   464 LCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVV 523
             L +DI+RFINEKII+AD VIV+HA TK+RDGDVLLTYGS   VEM++L+AHEL K+FRV+
Sbjct:   414 LQSDIERFINEKIIVADTVIVKHAVTKIRDGDVLLTYGSPTAVEMVILHAHELRKKFRVL 473

Query:   524 VVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVG 583
             VVDSRPK EGQ LLRRL+ +G++CTYTHINA+SYIMHEVT+VFLGASSVLSNGT YSRVG
Sbjct:   474 VVDSRPKLEGQLLLRRLIKRGINCTYTHINAISYIMHEVTKVFLGASSVLSNGTVYSRVG 533

Query:   584 TACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELG 622
             TACVAMVA+AFRVPVL+CCEAYKFHERVQLDSICSNELG
Sbjct:   534 TACVAMVANAFRVPVLVCCEAYKFHERVQLDSICSNELG 572
GO:0003743 "translation initiation factor activity" evidence=ISS;IBA
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA
GO:0005525 "GTP binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA
GO:0006413 "translational initiation" evidence=ISS
GO:0044237 "cellular metabolic process" evidence=IEA
GO:0045947 "negative regulation of translational initiation" evidence=IBA
GO:0050790 "regulation of catalytic activity" evidence=IBA
TAIR|locus:2028501 AT1G48970 "AT1G48970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2QM52 LOC_Os12g42260 "Initiation factor 2 subunit family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2051779 AT2G44070 "AT2G44070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-955 eif2b4 "eukaryotic translation initiation factor 2B, subunit 4 delta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDW0 EIF2B4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A8JGW6 EIF2B "Eukaryotic initiation factor" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|P41111 EIF2B4 "Translation initiation factor eIF-2B subunit delta" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290759 eif2b4 "eIF2B GDP-GTP exchange factor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:95300 Eif2b4 "eukaryotic translation initiation factor 2B, subunit 4 delta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_1230028
hypothetical protein (634 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0022009302
hypothetical protein (343 aa)
    ••• 0.829
estExt_fgenesh4_pm.C_LG_VIII0284
hypothetical protein (343 aa)
    ••• 0.828
eugene3.00030772
hypothetical protein (464 aa)
    ••• 0.819
estExt_Genewise1_v1.C_290097
hypothetical protein (465 aa)
    ••• 0.818
estExt_fgenesh4_pm.C_LG_XIII0470
SubName- Full=Putative uncharacterized protein; (271 aa)
    ••  0.806
fgenesh4_pg.C_scaffold_1866000002
annotation not avaliable (150 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 4e-70
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 1e-55
PRK08535310 PRK08535, PRK08535, translation initiation factor 1e-28
TIGR00511301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 7e-26
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 1e-15
PRK08335275 PRK08335, PRK08335, translation initiation factor 3e-13
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 4e-08
COG0182346 COG0182, COG0182, Predicted translation initiation 7e-07
PRK05772363 PRK05772, PRK05772, translation initiation factor 2e-06
PRK06372253 PRK06372, PRK06372, translation initiation factor 1e-04
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 6e-04
PRK06371329 PRK06371, PRK06371, translation initiation factor 0.001
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information 
 Score =  228 bits (583), Expect = 4e-70
 Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 5/240 (2%)

Query: 383 VTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIR 442
           V G  A  IA L     VI D  TP     V +L  ++ S + FLI  RP ++S+GNAI 
Sbjct: 2   VRGSPAIAIAALEGLLLVIQDARTPT----VAELKEQLRSAIEFLISARPTAVSLGNAID 57

Query: 443 FQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGS 502
                I++L  +    EAK +L    D FI+E I  A + I   AA  ++DGD +LT+ +
Sbjct: 58  RLLRIISELHSSSDVEEAKESLIEAADEFIDE-IEEARRKIGAIAAELIKDGDTILTHCN 116

Query: 503 SCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEV 562
           S  V  +L  AH+ GK+FRV+V +SRP+ +G+   + L+  G+  T    +AV Y+M EV
Sbjct: 117 SGTVLGVLRAAHKEGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDSAVGYVMQEV 176

Query: 563 TRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELG 622
            +V +GA  +L+NG   +++GT  +A++A A  VP  +  E YKF  R  LD     E  
Sbjct: 177 DKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEER 236

This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. Length = 281
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 630
KOG1467556 consensus Translation initiation factor 2B, delta 100.0
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
COG0182346 Predicted translation initiation factor 2B subunit 100.0
PRK05772363 translation initiation factor IF-2B subunit alpha; 100.0
PRK06036339 translation initiation factor IF-2B subunit alpha; 100.0
PRK08535310 translation initiation factor IF-2B subunit delta; 100.0
PRK08334356 translation initiation factor IF-2B subunit beta; 100.0
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 100.0
PRK06371329 translation initiation factor IF-2B subunit alpha; 100.0
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 100.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 100.0
PRK08335275 translation initiation factor IF-2B subunit alpha; 100.0
KOG1468354 consensus Predicted translation initiation factor 100.0
KOG1465353 consensus Translation initiation factor 2B, beta s 100.0
KOG1466313 consensus Translation initiation factor 2B, alpha 100.0
PRK06372253 translation initiation factor IF-2B subunit delta; 100.0
PRK00702220 ribose-5-phosphate isomerase A; Provisional 97.54
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 97.45
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 97.32
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 96.65
PRK13509251 transcriptional repressor UlaR; Provisional 96.27
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 96.22
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 96.19
PRK10411240 DNA-binding transcriptional activator FucR; Provis 95.76
PLN02384264 ribose-5-phosphate isomerase 95.23
COG1349253 GlpR Transcriptional regulators of sugar metabolis 95.03
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 94.96
PRK13978228 ribose-5-phosphate isomerase A; Provisional 94.48
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 93.95
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 90.04
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 86.53
PRK04311 464 selenocysteine synthase; Provisional 83.23
KOG0259 447 consensus Tyrosine aminotransferase [Amino acid tr 82.69
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 82.11
PF01073 280 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso 81.99
cd00293130 USP_Like Usp: Universal stress protein family. The 80.23
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-90  Score=737.73  Aligned_cols=470  Identities=51%  Similarity=0.776  Sum_probs=387.7

Q ss_pred             CCCccccCCCC-CCCCcccccccc--cCCCCCCCCCCCCccccccccccCCCCCCccCCCCCCCCCCCCccccccCCccc
Q 006803           50 DFSPVMIPPPR-HHSENLSHLRSA--AVAVPESSSRRPMWDDRVAVVGSYNPGNSLLGQPVSPNSSEVNSEASTTLGWFG  126 (630)
Q Consensus        50 ~~spv~ipp~r-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (630)
                      .++|+|||++| |.+|++...+.+  ..+.....+..+        .+.|+.++.+. .+ .+.                
T Consensus        20 ~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~--------~~~~~~p~~~t-~s-~~~----------------   73 (556)
T KOG1467|consen   20 LPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQG--------EDKNAEPKDLT-AS-AKQ----------------   73 (556)
T ss_pred             ccccccCccccccchHHHHHHHHHhhcCccccccccCC--------CccccCccccc-cc-ccc----------------
Confidence            89999999999 999999987666  445444444333        36677777544 22 000                


Q ss_pred             CCCCCCcccCCCCCCCCcccccccccccccccCCCccccccCCCCceEEecCcccchhhhhhccHHHHHHHHHHHHHHHH
Q 006803          127 RNSSGKFSAGSSFPGGGFDLTTVKMENFTQLEGKKPEAVPERGGGAAVEVHNEVSSSTAKAKTTKAERRAMQEAQRAAKA  206 (630)
Q Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~k~sk~eRr~l~~~q~~ak~  206 (630)
                          .+..+..|.|+||||||..-.++                                                   .+
T Consensus        74 ----~~~~~~~s~~~~~~e~t~a~~a~---------------------------------------------------~~   98 (556)
T KOG1467|consen   74 ----ARVAVKASLPKGGAELTVANKAA---------------------------------------------------AA   98 (556)
T ss_pred             ----cccchhhcccCCcceecccccch---------------------------------------------------hh
Confidence                12477899999999999663000                                                   00


Q ss_pred             hccCCCCCCCcccCCcccccccchhhccHHHHHHHHHHHHHHHHhccccCCCCccc--cCCCCCCCCCCCCC-CCCCCCC
Q 006803          207 ATKGKGGGGGVEVNNRESSSNTLKAKTTKAERRETQEAQRAAKAAGKAQGNKPVAA--AGGAGPGNILRQPS-QNRDDPA  283 (630)
Q Consensus       207 ~~k~~~~~~~~~~~~~~~s~~~~~~k~~Kaerra~Qe~~RAak~a~~~~~~~~~~~--~~~~~~~~~~~~~~-~k~~~~~  283 (630)
                      +.    .+ ..+.+..++.++.....+++++|++.||++||+|.+.+++++.-+..  .+.+.+......|. .|+.-| 
T Consensus        99 a~----~s-~~~~p~~~~~~ka~~~~~t~a~~~a~~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p-  172 (556)
T KOG1467|consen   99 AG----SS-ATQSPKKEKPPKAGLAVPTRAERKAIQEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALP-  172 (556)
T ss_pred             hc----cc-cccCCcccCCcccccccccHHHHhhHHHHHHHHHHhhhcccccccccccccccCcccccCCCcccccccc-
Confidence            00    00 01112233445667778899999999999999999998886532110  11111111222222 122111 


Q ss_pred             CCCcccccCCCCCCCCCcccccCCCCCCCCccCchhhhhcccccccccccccCCceeeeccCCCccccccccChHHHhhh
Q 006803          284 VGSTIAGSDRRGGDRPPERERKKDVPPPRMQFDDQGRVNKSKKRAVFNQPEAKNRVELFRHLPQYEHGSQLTDLESKFLE  363 (630)
Q Consensus       284 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~q~d~~~~~~k~~~~~v~~~~~~~~~v~lf~hLP~~~~~~~l~~~~~~~~a  363 (630)
                          +.-    +... +-  .+.++++|.+|+|+..++. ++|++|..+     ++.||+||||+.+..      ..|..
T Consensus       173 ----~~t----~~~~-~~--~~~~~~~pq~q~kt~~~~~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~  229 (556)
T KOG1467|consen  173 ----VTT----SVDQ-AL--KRRAVQNPQNQAKTLASAS-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIF  229 (556)
T ss_pred             ----ccc----cccc-hH--HhhcccchhhhhhhhcccC-ccccccccc-----eehhhhhhhHhhccc------ccccc
Confidence                100    0000 11  5678999999999987665 788888866     899999999998875      23556


Q ss_pred             ccCchhhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCcchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHH
Q 006803          364 LDSMHPAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRF  443 (630)
Q Consensus       364 i~~mhPAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrr  443 (630)
                      +..|||||++||+||+.|+|+|+|+||++||.+|+++|+||++|++++|++||..+|+.+++||++|||++++|||||||
T Consensus       230 ~~~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRf  309 (556)
T KOG1467|consen  230 LDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRF  309 (556)
T ss_pred             cccccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHH
Confidence            66799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEeecChHHHHHHHHHHHHcCCceEEE
Q 006803          444 QKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVV  523 (630)
Q Consensus       444 lk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S~tV~~vL~~A~e~gk~f~Vi  523 (630)
                      +|++|+.++.+.++.|+|+.|++.|++||+|+|..|.+.|++++.++|+|||+|||||+|++|..+|.+||+.|++|+|+
T Consensus       310 lK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVv  389 (556)
T KOG1467|consen  310 LKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVV  389 (556)
T ss_pred             HHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCchHHHHHHHHHhCCCcEEEEcchhHHHHhccccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecc
Q 006803          524 VVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCE  603 (630)
Q Consensus       524 V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~ae  603 (630)
                      |+||||++||++|++.|.+.||+|||+++++++|+|.+|++||||||+|++||.||+|+||+++||+|++|||||+||||
T Consensus       390 VVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE  469 (556)
T KOG1467|consen  390 VVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCE  469 (556)
T ss_pred             EEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcccccccCcccccc
Q 006803          604 AYKFHERVQLDSICSNELGMLVLVLV  629 (630)
Q Consensus       604 t~Kf~~r~~~ds~i~nElrdP~EVl~  629 (630)
                      +|||++|+|+|++++|||+||++|.+
T Consensus       470 ~yKF~eRvQlDsi~~NEL~dpn~l~~  495 (556)
T KOG1467|consen  470 AYKFHERVQLDSIVSNELGDPNALQE  495 (556)
T ss_pred             hhhhhhhhhhhhhhhcccCChhhhhh
Confidence            99999999999999999999998754

>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>PRK04311 selenocysteine synthase; Provisional Back     alignment and domain information
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
3vm6_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-21
3a11_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 6e-21
3a9c_A321 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 8e-20
3a9c_E322 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 9e-20
3a9c_F323 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-19
3a9c_B326 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 3e-19
1vb5_A276 Crystal Structure Analysis Of The Pyrococcus Horiko 2e-11
3ecs_A315 Crystal Structure Of Human Eif2b Alpha Length = 315 9e-09
1t5o_A351 Crystal Structure Of The Translation Initiation Fac 1e-06
1t9k_A347 X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel 1e-04
2yrf_A374 Crystal Structure Of 5-Methylthioribose 1-Phosphate 1e-04
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1 In Complex With Alpha-D-Ribose-1,5- Bisphosphate Length = 338 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 10/216 (4%)
Query: 411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSE--TEAKAALCNDI 468
           T V +   ++      L E RP ++S+ NA+R+   R  K+  +      + +  + N  
Sbjct: 59  TNVDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAA 117
Query: 469 DRFINEKIILADKVIVR---HAATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVV 525
             FI+     ++K + R     A ++ DGDV++T+  S     ++  A E GK  +V+V 
Sbjct: 118 KEFIHN----SEKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVT 173
Query: 526 DSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTA 585
           ++RPK +G+   + L + G+   Y   +A  + M    +V +GA S+  NG   +++GTA
Sbjct: 174 ETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTA 233
Query: 586 CVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNEL 621
            +A+ A   RV  +I  E YKFH    L  +   E+
Sbjct: 234 LIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEM 269
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakaraensis Kod1 Length = 338 Back     alignment and structure
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii Ot3 Translation Initiation Factor Eif-2b Length = 276 Back     alignment and structure
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha Length = 315 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347 Back     alignment and structure
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate Isomerase From Bacillus Subtilis Complexed With Sulfate Ion Length = 374 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 1e-70
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 1e-25
3a11_A338 Translation initiation factor EIF-2B, delta subun; 2e-19
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 4e-11
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 6e-11
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 2e-09
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
 Score =  229 bits (587), Expect = 1e-70
 Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 5/227 (2%)

Query: 388 ARCIAMLRAFQEVINDYSTPPGKTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSR 447
           A  +A +R   E +        + L  +LT+ I +          +++S G  +  +   
Sbjct: 21  ASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGV---DSSVAVSSGGELFLRFIS 77

Query: 448 IAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATKVRDGDVLLTYGSSCVVE 507
           +A L  +   ++ K  +    + F+  +I L+   I     T ++DG  +LT+  S VV 
Sbjct: 78  LASLEYS-DYSKCKKIMIERGELFL-RRISLSRNKIADLCHTFIKDGATILTHAYSRVVL 135

Query: 508 MILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLSCTYTHINAVSYIMHEVTRVFL 567
            +L  A    K+F V V +S+P   G+ + + L    +  T     AV YIM +   V +
Sbjct: 136 RVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIV 195

Query: 568 GASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLD 614
           GA  V+ NG   +++GT  +A+ A A   P  +  E++KF     L+
Sbjct: 196 GAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLN 242
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 100.0
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 100.0
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 100.0
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 100.0
3a11_A338 Translation initiation factor EIF-2B, delta subun; 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 100.0
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 100.0
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.92
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 98.16
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 97.82
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 97.79
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 97.78
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 97.65
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 97.36
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 97.35
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 97.35
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 97.35
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 97.24
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 96.66
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 92.99
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 88.83
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 83.12
3i6i_A 346 Putative leucoanthocyanidin reductase 1; rossmann 82.63
3e8x_A236 Putative NAD-dependent epimerase/dehydratase; stru 81.99
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
Probab=100.00  E-value=9.9e-62  Score=517.59  Aligned_cols=273  Identities=19%  Similarity=0.256  Sum_probs=255.7

Q ss_pred             Cceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCCc
Q 006803          337 NRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPGK  410 (630)
Q Consensus       337 ~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~~  410 (630)
                      +.|.||  +.||++..|..|.++++.+.+|+.|+    |+|              |.++|++|+++++++.....|    
T Consensus        26 ~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaI--------------giaaa~~l~l~~~~~~~~~~~----   87 (383)
T 2a0u_A           26 GSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAI--------------AVSAALGIAVATQRKAANGEL----   87 (383)
T ss_dssp             TEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHHHHHHHSSC----
T ss_pred             CEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCCCCCcHHH--------------HHHHHHHHHHHHHhhcccccC----
Confidence            479999  99999999999999999999999999    999              999999999999998765444    


Q ss_pred             chHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006803          411 TLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAATK  490 (630)
Q Consensus       411 ~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~~  490 (630)
                      ....+|.+.|+..+++|.++|||++||+|++++|++.+.....+.+.+++|+.|++.+++|++|++ .+++.|+++|+++
T Consensus        88 ~~~~~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~~-~~~~~I~~~g~~~  166 (383)
T 2a0u_A           88 KSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDV-AFNEGIMRHGAAH  166 (383)
T ss_dssp             CCHHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            235789999999999999999999999999999999987643334678999999999999999976 7999999999999


Q ss_pred             cc--------CCCEEEeecCh--------HHHHHHHHHHHHcCCceEEEEcCCCCCchHHH-HHHHHHhCCCcEEEEcch
Q 006803          491 VR--------DGDVLLTYGSS--------CVVEMILLYAHELGKQFRVVVVDSRPKHEGQA-LLRRLLAKGLSCTYTHIN  553 (630)
Q Consensus       491 I~--------dgdvILT~g~S--------~tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~-La~eL~~~GI~vTlI~Ds  553 (630)
                      |.        +|++|||||||        +||+++|+.|+++|++|+|||+||||++||.+ ++|+|.+.|||||||+||
T Consensus       167 I~~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Ds  246 (383)
T 2a0u_A          167 ILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDG  246 (383)
T ss_dssp             HHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGG
T ss_pred             hhhhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehh
Confidence            99        99999999999        59999999999999999999999999999986 569999999999999999


Q ss_pred             hHHHHhcc--ccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803          554 AVSYIMHE--VTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL  628 (630)
Q Consensus       554 Av~~iM~~--Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl  628 (630)
                      |++|+|++  ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.+++|..+.||+|||+||+
T Consensus       247 a~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~  323 (383)
T 2a0u_A          247 AASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEIT  323 (383)
T ss_dssp             GHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHH
T ss_pred             HHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhc
Confidence            99999998  9999999999999999999999999999999999999999999999999999999999999999985
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Back     alignment and structure
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 630
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 4e-39
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 2e-30
g1w2w.1402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 3e-27
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 5e-22
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 2e-19
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  142 bits (360), Expect = 4e-39
 Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 12/194 (6%)

Query: 427 LIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRH 486
           +++  P   S+ N  RF           +  T  +  L +    F+   +  A + +   
Sbjct: 54  VVKVNPSMASLYNLARF-----------IPVTNRRDILKSRALEFLRR-MEEAKRELASI 101

Query: 487 AATKVRDGDVLLTYGSSCVVEMILLYAHELGKQFRVVVVDSRPKHEGQALLRRLLAKGLS 546
            A  + DGDV++T+  S  V  I+  A E  K+F+V++ +S P +EG  L R L   G+ 
Sbjct: 102 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 161

Query: 547 CTYTHINAVSYIMHEVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYK 606
                   +     E +   +GA  +  +G   ++ GT  +A+  H   +P  +  E YK
Sbjct: 162 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 221

Query: 607 FHERVQLDSICSNE 620
           FH  ++   +   E
Sbjct: 222 FHPTLKSGDVMLME 235
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 100.0
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 100.0
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.07
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.02
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 96.53
d1a9xa2138 Carbamoyl phosphate synthetase, large subunit allo 84.01
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Initiation factor 2b
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=7.3e-60  Score=499.79  Aligned_cols=274  Identities=20%  Similarity=0.269  Sum_probs=255.9

Q ss_pred             CCceeee--ccCCCccccccccChHHHhhhccCch----hhHHHHHHHhhcCCcchHHHHHHHHHHHHHHHhhhcCCCCC
Q 006803          336 KNRVELF--RHLPQYEHGSQLTDLESKFLELDSMH----PAVYKVGVQYLAGDVTGGNARCIAMLRAFQEVINDYSTPPG  409 (630)
Q Consensus       336 ~~~v~lf--~hLP~~~~~~~l~~~~~~~~ai~~mh----PAI~~Lgl~~~~g~I~Gs~arala~L~alr~vI~d~~~p~~  409 (630)
                      .++|.||  +.||++.+|+.|.++++++.+|++|.    |+|              |.++|++|++++++...+..+   
T Consensus        16 ~~~v~ilDQ~~LP~~~~~~~~~t~~~v~~AIk~M~VRGAPaI--------------gvaaA~glala~~~~~~~~~~---   78 (374)
T d2a0ua1          16 PGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAI--------------AVSAALGIAVATQRKAANGEL---   78 (374)
T ss_dssp             TTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHH--------------HHHHHHHHHHHHHHHHHHSSC---
T ss_pred             CCEEEEEeCCCCCCcEEEEEeCCHHHHHHHhhcCeecCccHH--------------HHHHHHHHHHHHHhhccCccc---
Confidence            3579999  99999999999999999999999999    999              999999999999998765433   


Q ss_pred             cchHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006803          410 KTLVRDLTAKISSYVSFLIECRPLSMSMGNAIRFQKSRIAKLPLTLSETEAKAALCNDIDRFINEKIILADKVIVRHAAT  489 (630)
Q Consensus       410 ~~~~rdL~~~L~~~i~~L~~aRPtsVsLgNAIrrlk~~I~~~~~~~s~~eaKe~L~e~Id~fi~E~i~~A~~~Ia~~a~~  489 (630)
                       .+.+++.++|+..+++|.++|||+|||+|++++|+..+.++....+..+.++.+++.++.|++|++ .+++.|+++|++
T Consensus        79 -~s~~el~~~L~~a~~~L~~sRPTAVNL~nAv~rv~~~i~~~~~~~s~~e~~~~ll~~A~~i~~eD~-~~n~~Ig~~Ga~  156 (374)
T d2a0ua1          79 -KSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDV-AFNEGIMRHGAA  156 (374)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence             456899999999999999999999999999999999998876556678899999999999999976 788999999999


Q ss_pred             hc--------cCCCEEEeecChH--------HHHHHHHHHHHcCCceEEEEcCCCCCchHHHH-HHHHHhCCCcEEEEcc
Q 006803          490 KV--------RDGDVLLTYGSSC--------VVEMILLYAHELGKQFRVVVVDSRPKHEGQAL-LRRLLAKGLSCTYTHI  552 (630)
Q Consensus       490 ~I--------~dgdvILT~g~S~--------tV~~vL~~A~e~gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~D  552 (630)
                      +|        .+|++||||||++        |++++|+.||++|++|+|||+||||++||.+| +|+|.+.||+||||+|
T Consensus       157 li~e~~~~~~~~~~~ilThcn~g~Lat~~~gtal~~i~~a~~~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~D  236 (374)
T d2a0ua1         157 HILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICD  236 (374)
T ss_dssp             HHHHHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECG
T ss_pred             HHHHHHhhcCCCCceeEeeccCcceEeeccchhhHHhHHHHHcCCccEEEEecccccccchHHHHHHHHhccCCcEEEec
Confidence            88        6789999999985        67999999999999999999999999999877 5999999999999999


Q ss_pred             hhHHHHhc--cccEEEEcceeEecCCceecccchHHHHHHHHhCCCcEEEecccccccccccCCCcccccccCccccc
Q 006803          553 NAVSYIMH--EVTRVFLGASSVLSNGTTYSRVGTACVAMVAHAFRVPVLICCEAYKFHERVQLDSICSNELGMLVLVL  628 (630)
Q Consensus       553 sAv~~iM~--~Vd~VivGAdaI~aNG~V~NKiGT~~lAlaAk~~~VPV~V~aet~Kf~~r~~~ds~i~nElrdP~EVl  628 (630)
                      |+++|+|+  +||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||+++++.|.++.||+|+|+||+
T Consensus       237 sa~~~~m~~~~v~~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~~~ev~  314 (374)
T d2a0ua1         237 GAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEIT  314 (374)
T ss_dssp             GGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHH
T ss_pred             cchhhhhhccceeEEEecceEEEecCCEEeccchHHHHHHHHHcCCCEEEEecccccCcCCCCCCcccccCCChHHcc
Confidence            99999997  49999999999999999999999999999999999999999999999999999999999999999985
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure