Citrus Sinensis ID: 007921

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEEEEEEcEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccEEEEEEHHHHcHHHHHHHHHHHHcHHHHHHHccc
ccEEEEcccccccccccccccEccccccEcccEEEccccccccEEEEEEcccccccccccccccHHHHHcccEEEEccHHHcccccccccccHHcccccccccccccccccccccccccccccccccHHHHcccHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHEcccccccccEEEcEccccccEEcccccccHHHHHHHHHcHHHHHHHHcccccHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
meatllsshhftpqlftttpvklggghvladnrfchplctkTFVSVRLSLLdskrrqvpllnrpflsrankrysvyssdqlrsDYVNVEASSALsvnleavpprlddevdsqglrdvtdnetfrskpkmykNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIgyfiplpgfdrrlipqdylsFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDtisesgfgqgsSLIICVGILTGYTETLYKMLSQLLVFKYtagssvrwwpFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFklasaaredspitevepyipfninpsgmqpvlttTYLLAFPSILASILGSPFWQHVKEIlnpetsvgarpwvYYTIYAFFVFLFNIFDIANLPKEIADYLNKMgaripnvkpgkaTIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
meatllsshhftpqlfTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLslldskrrqvpllnrpflsrankrysvyssdqlrSDYVNVEASSAlsvnleavpprlddevdsqglrdvtdnetfrskpkmykNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLasaaredspitEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRsyqaynvmpslskalrrygv
MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGlllsilatsstilDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
*********HFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYS******DYVNV****************************************MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP***********
********HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRL****************FLSRANKRYSV**************************************************************IRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL**********TEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY**
********HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
*EATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPP****************NETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYG*
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MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query585 2.2.26 [Sep-21-2011]
F4IQV7575 Preprotein translocase su yes no 0.923 0.939 0.727 0.0
P0A4H1439 Protein translocase subun yes no 0.687 0.915 0.321 3e-45
P0A4H0439 Protein translocase subun yes no 0.687 0.915 0.321 3e-45
O66491429 Protein translocase subun yes no 0.687 0.937 0.312 2e-42
Q1XDJ1411 Protein translocase subun N/A no 0.659 0.939 0.298 8e-42
P51297411 Protein translocase subun N/A no 0.659 0.939 0.296 1e-39
Q05217430 Protein translocase subun yes no 0.690 0.939 0.281 5e-38
Q8CNF3430 Protein translocase subun yes no 0.685 0.932 0.295 7e-38
Q5HM19430 Protein translocase subun yes no 0.685 0.932 0.295 7e-38
Q7A086430 Protein translocase subun yes no 0.682 0.927 0.291 7e-37
>sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1 Back     alignment and function desciption
 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/551 (72%), Positives = 471/551 (85%), Gaps = 11/551 (1%)

Query: 38  LCTKTFVSVRLSLLDSKRRQ---VPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSAL 94
           LC++    +  +L  S+ RQ   + +  R  L +  K +S+  SD+ R D ++ E     
Sbjct: 33  LCSQPRKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTD 92

Query: 95  SVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKS 154
           ++++E +PP   D  +SQ       N     +PK ++NRFL+F+R+SSVLN AAE FFKS
Sbjct: 93  ALDVEIIPPDSQDIRNSQN--SAVSNTLQDDRPKSFRNRFLDFVRISSVLNTAAERFFKS 150

Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214
           EIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+FGAE+KLS FQ
Sbjct: 151 EIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQ 210

Query: 215 LGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYS 274
           LG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHEKIKSYIWW+S  FAI+EA++VA  S
Sbjct: 211 LGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHEKIKSYIWWLSFFFAIVEALVVAYTS 270

Query: 275 LPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTET 334
           L YS++AA+  VKHVM+T+ LLVCGAMTM+W+CDTISESGFG GSSLIICVGILTGYTET
Sbjct: 271 LQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDTISESGFGHGSSLIICVGILTGYTET 330

Query: 335 LYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLAS 394
           L+KML+Q+      +GS   W P++LGLLG+FT+VTM+AVVVTEGCRK+KLQYYGFKLAS
Sbjct: 331 LHKMLNQI------SGSFSNWLPYLLGLLGIFTVVTMFAVVVTEGCRKIKLQYYGFKLAS 384

Query: 395 AAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPET 454
           A+RE SPITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILASILGSPF  ++KEILNPE+
Sbjct: 385 ASREGSPITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILASILGSPFLLNMKEILNPES 444

Query: 455 SVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQ 514
           +VGA PWVYY+IYAFFVFLFNIFDIANLPKEIADYLNKMGARIPN+KPGKATIEYLTKIQ
Sbjct: 445 TVGAPPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNIKPGKATIEYLTKIQ 504

Query: 515 ASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP 574
           ASTRFWGGLLLS LAT+ST+LDHYLR IN+GFSIGFTSVLIIVGSIIELRRSY AYNVMP
Sbjct: 505 ASTRFWGGLLLSFLATASTVLDHYLRSINQGFSIGFTSVLIIVGSIIELRRSYHAYNVMP 564

Query: 575 SLSKALRRYGV 585
           SLSKAL+RYGV
Sbjct: 565 SLSKALKRYGV 575
Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. Central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug.
Arabidopsis thaliana (taxid: 3702)
>sp|P0A4H1|SECY_SYNP6 Protein translocase subunit SecY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H0|SECY_SYNE7 Protein translocase subunit SecY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|O66491|SECY_AQUAE Protein translocase subunit SecY OS=Aquifex aeolicus (strain VF5) GN=secY PE=1 SV=1 Back     alignment and function description
>sp|Q1XDJ1|SECY_PORYE Protein translocase subunit SecY OS=Porphyra yezoensis GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P51297|SECY_PORPU Protein translocase subunit SecY OS=Porphyra purpurea GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q05217|SECY_STACT Protein translocase subunit SecY OS=Staphylococcus carnosus (strain TM300) GN=secY PE=3 SV=2 Back     alignment and function description
>sp|Q8CNF3|SECY_STAES Protein translocase subunit SecY OS=Staphylococcus epidermidis (strain ATCC 12228) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q5HM19|SECY_STAEQ Protein translocase subunit SecY OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q7A086|SECY_STAAW Protein translocase subunit SecY OS=Staphylococcus aureus (strain MW2) GN=secY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query585
296086738613 unnamed protein product [Vitis vinifera] 0.989 0.944 0.784 0.0
225437006668 PREDICTED: preprotein translocase subuni 0.967 0.847 0.779 0.0
147784859 1622 hypothetical protein VITISV_011897 [Viti 0.935 0.337 0.787 0.0
224066513552 SecY protein [Populus trichocarpa] gi|22 0.943 1.0 0.747 0.0
255559472538 protein translocase secy subunit, putati 0.835 0.908 0.805 0.0
449444663494 PREDICTED: preprotein translocase subuni 0.844 1.0 0.798 0.0
240254559575 secY protein transport-like protein [Ara 0.923 0.939 0.727 0.0
356503539546 PREDICTED: preprotein translocase subuni 0.926 0.992 0.702 0.0
297822899567 hypothetical protein ARALYDRAFT_320901 [ 0.914 0.943 0.687 0.0
4582448556 putative preprotein translocase SECY pro 0.935 0.983 0.688 0.0
>gi|296086738|emb|CBI32373.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/585 (78%), Positives = 507/585 (86%), Gaps = 6/585 (1%)

Query: 1   MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPL 60
           MEATLLSSHHF P+ F+  P K  GG V    + C P   +T VS++L   +S  R+  L
Sbjct: 35  MEATLLSSHHFNPRFFSPKPFKFPGGQVEHGLQLCCPFYARTNVSLKLISSESSARRFSL 94

Query: 61  LNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDN 120
           L+RPFLSRANK+  V  S+QLRSDY+N EA+   SVN E  P R DD  D  G  +V ++
Sbjct: 95  LSRPFLSRANKKLCVNFSEQLRSDYLNAEATPLQSVNDELFPQRHDDGSDVFGPHNVNNS 154

Query: 121 ETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPG 180
           ET + + KM++NRFLNF RL SVLNNAAESFFKSEIRRRLFVTAVL+VISR+GYFIPLPG
Sbjct: 155 ETLQPRTKMFRNRFLNFARLGSVLNNAAESFFKSEIRRRLFVTAVLLVISRVGYFIPLPG 214

Query: 181 FDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQL 240
           FDRRL+P+DYLSFVSGSVDELGDF  ELKLS FQLGISPQI ASILMQVLCH+VPSLV+L
Sbjct: 215 FDRRLMPEDYLSFVSGSVDELGDFAGELKLSLFQLGISPQIAASILMQVLCHVVPSLVKL 274

Query: 241 RKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGA 300
           RKEGLDGHEKIKSYIWWISLGFAILEA+++ACYSL YS+YAASH VKHVMVT   LVCGA
Sbjct: 275 RKEGLDGHEKIKSYIWWISLGFAILEALVLACYSLTYSVYAASHRVKHVMVTTLFLVCGA 334

Query: 301 MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFML 360
           MTM+WICD ISESGFGQGSSLIICVGILTGYT+TLYKML QL      +G +V WWP++L
Sbjct: 335 MTMTWICDKISESGFGQGSSLIICVGILTGYTDTLYKMLVQL------SGGAVSWWPYIL 388

Query: 361 GLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQP 420
            +LGVFTIVTMWAVVVTEGCRK+KLQYYGFKLASA R+DSPITEVEPYIPFNINPSGMQP
Sbjct: 389 AVLGVFTIVTMWAVVVTEGCRKIKLQYYGFKLASATRDDSPITEVEPYIPFNINPSGMQP 448

Query: 421 VLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA 480
           VLTT YLLAFPSILAS+L SPFW+H+KEILNPETS+GA PWVYY+IYAFFVF+FNIFDIA
Sbjct: 449 VLTTAYLLAFPSILASLLRSPFWEHIKEILNPETSIGAEPWVYYSIYAFFVFVFNIFDIA 508

Query: 481 NLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLR 540
           N+PKEIADYLNKMGARIPN+KPGKATI YLTKIQASTRFWGGLLLS LAT STILDHYLR
Sbjct: 509 NMPKEIADYLNKMGARIPNIKPGKATIAYLTKIQASTRFWGGLLLSFLATMSTILDHYLR 568

Query: 541 RINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV 585
           RIN+GFSIGFTSVLIIVGSIIELRRSYQAYNVMP LSKALRRYGV
Sbjct: 569 RINQGFSIGFTSVLIIVGSIIELRRSYQAYNVMPDLSKALRRYGV 613

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437006|ref|XP_002272499.1| PREDICTED: preprotein translocase subunit secY-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784859|emb|CAN77495.1| hypothetical protein VITISV_011897 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224066513|ref|XP_002302117.1| SecY protein [Populus trichocarpa] gi|222843843|gb|EEE81390.1| SecY protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255559472|ref|XP_002520756.1| protein translocase secy subunit, putative [Ricinus communis] gi|223540141|gb|EEF41718.1| protein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449444663|ref|XP_004140093.1| PREDICTED: preprotein translocase subunit SCY2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240254559|ref|NP_180711.4| secY protein transport-like protein [Arabidopsis thaliana] gi|363805540|sp|F4IQV7.1|SCY2_ARATH RecName: Full=Preprotein translocase subunit SCY2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2289; Flags: Precursor gi|330253463|gb|AEC08557.1| secY protein transport-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503539|ref|XP_003520565.1| PREDICTED: preprotein translocase subunit secY-like [Glycine max] Back     alignment and taxonomy information
>gi|297822899|ref|XP_002879332.1| hypothetical protein ARALYDRAFT_320901 [Arabidopsis lyrata subsp. lyrata] gi|297325171|gb|EFH55591.1| hypothetical protein ARALYDRAFT_320901 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|4582448|gb|AAD24832.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query585
TAIR|locus:2065868575 SCY2 "SECY HOMOLOG 2" [Arabido 0.923 0.939 0.709 1.2e-207
UNIPROTKB|P0AGA2443 secY [Escherichia coli K-12 (t 0.695 0.918 0.284 8.8e-35
TIGR_CMR|CPS_0621445 CPS_0621 "preprotein transloca 0.694 0.912 0.273 5.6e-34
TIGR_CMR|SO_0251446 SO_0251 "preprotein translocas 0.695 0.912 0.275 2.7e-33
TIGR_CMR|CBU_0258442 CBU_0258 "preprotein transloca 0.707 0.936 0.259 4.6e-33
UNIPROTKB|P78283444 secY "Protein translocase subu 0.700 0.923 0.266 6e-33
TIGR_CMR|VC_2576444 VC_2576 "preprotein translocas 0.700 0.923 0.266 6e-33
TIGR_CMR|DET_0494438 DET_0494 "preprotein transloca 0.702 0.938 0.269 2.2e-32
TIGR_CMR|SPO_0506455 SPO_0506 "preprotein transloca 0.676 0.870 0.265 2.9e-31
NCBI_NP|NP_354903.2446 prlA "preprotein translocase s 0.704 0.923 0.269 8.2e-30
TAIR|locus:2065868 SCY2 "SECY HOMOLOG 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
 Identities = 391/551 (70%), Positives = 459/551 (83%)

Query:    38 LCTKTFVSVRLSLLDSKRRQ---VPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSAL 94
             LC++    +  +L  S+ RQ   + +  R  L +  K +S+  SD+ R D ++ E     
Sbjct:    33 LCSQPRKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTD 92

Query:    95 SVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKS 154
             ++++E +PP   D  +SQ       N     +PK ++NRFL+F+R+SSVLN AAE FFKS
Sbjct:    93 ALDVEIIPPDSQDIRNSQN--SAVSNTLQDDRPKSFRNRFLDFVRISSVLNTAAERFFKS 150

Query:   155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214
             EIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+FGAE+KLS FQ
Sbjct:   151 EIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQ 210

Query:   215 LGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYS 274
             LG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHEKIKSYIWW+S  FAI+EA++VA  S
Sbjct:   211 LGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHEKIKSYIWWLSFFFAIVEALVVAYTS 270

Query:   275 LPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTET 334
             L YS++AA+  VKHVM+T+ LLVCGAMTM+W+CDTISESGFG GSSLIICVGILTGYTET
Sbjct:   271 LQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDTISESGFGHGSSLIICVGILTGYTET 330

Query:   335 LYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLAS 394
             L+KML+Q+      +GS   W P++LGLLG+FT+VTM+AVVVTEGCRK+KLQYYGFKLAS
Sbjct:   331 LHKMLNQI------SGSFSNWLPYLLGLLGIFTVVTMFAVVVTEGCRKIKLQYYGFKLAS 384

Query:   395 AAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPET 454
             A+RE SPITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILASILGSPF  ++KEILNPE+
Sbjct:   385 ASREGSPITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILASILGSPFLLNMKEILNPES 444

Query:   455 SVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQ 514
             +VGA PWVYY+IYAFFVFLFNIFDIANLPKEIADYLNKMGARIPN+KPGKATIEYLTKIQ
Sbjct:   445 TVGAPPWVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNIKPGKATIEYLTKIQ 504

Query:   515 ASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP 574
             ASTRFWGG             DHYLR IN+GFSIGFTSVLIIVGSIIELRRSY AYNVMP
Sbjct:   505 ASTRFWGGLLLSFLATASTVLDHYLRSINQGFSIGFTSVLIIVGSIIELRRSYHAYNVMP 564

Query:   575 SLSKALRRYGV 585
             SLSKAL+RYGV
Sbjct:   565 SLSKALKRYGV 575
GO:0005886 "plasma membrane" evidence=ISM
GO:0009306 "protein secretion" evidence=ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0009526 "plastid envelope" evidence=IDA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
UNIPROTKB|P0AGA2 secY [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0621 CPS_0621 "preprotein translocase, SecY subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0251 SO_0251 "preprotein translocase, SecY subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0258 CBU_0258 "preprotein translocase, SecY subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P78283 secY "Protein translocase subunit SecY" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2576 VC_2576 "preprotein translocase, SecY subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0494 DET_0494 "preprotein translocase, SecY subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0506 SPO_0506 "preprotein translocase, SecY subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
NCBI_NP|NP_354903.2 prlA "preprotein translocase subunit SecY" [Agrobacterium fabrum str. C58 (taxid:176299)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4IQV7SCY2_ARATHNo assigned EC number0.72770.92300.9391yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00020502
SecY protein (552 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.IV.3048.1
SubName- Full=Putative uncharacterized protein; (227 aa)
• •     0.498
rps8
RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)
• •     0.474
eugene3.00020721
hypothetical protein (1053 aa)
  •   • 0.473

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query585
pfam00344340 pfam00344, SecY, SecY translocase 3e-73
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 6e-71
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 4e-63
CHL00161417 CHL00161, secY, preprotein translocase subunit Sec 6e-63
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 6e-57
PRK12907434 PRK12907, secY, preprotein translocase subunit Sec 4e-31
PRK12417404 PRK12417, secY, preprotein translocase subunit Sec 2e-24
TIGR02920395 TIGR02920, acc_sec_Y2, accessory Sec system transl 5e-20
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information 
 Score =  237 bits (607), Expect = 3e-73
 Identities = 104/362 (28%), Positives = 173/362 (47%), Gaps = 29/362 (8%)

Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
           S F LGI P I ASI+MQ+L  + P L +L KEG +G +KI+ Y  +++L  A+++A+ +
Sbjct: 1   SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60

Query: 271 ACYSLPYSIYAASHSVK----HVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
                 Y  ++    +     ++++    L  G M + W+ + I++ G G G SLII  G
Sbjct: 61  VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAG 120

Query: 327 ILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKL 385
           I+      +  + S L     +AG  +     +L L  + T+  +  VV + E  R++ +
Sbjct: 121 IVASIPWAIINLFSLLS----SAGGLLSILYLLLLL--LATLAVILLVVYLQEARRRIPI 174

Query: 386 QYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQH 445
           QY    +     + S       Y+P  +N +G+ P++  + LLA P  +A  LGS F   
Sbjct: 175 QYAKRVVGGGRGQSS-------YLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLW 227

Query: 446 VKEILNPETSVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNVKPG 503
               L     +G+   VY   Y   +  F+ F   I   PK+IA+ L K G  IP ++PG
Sbjct: 228 PVSGLAYYLPIGS--PVYILFYIVLIIFFSYFYTAIGFNPKDIAENLKKSGGFIPGIRPG 285

Query: 504 KATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIEL 563
           K+T +YL ++     F G + L ++A    +L             G TS+LI VG  ++ 
Sbjct: 286 KSTEKYLNRVIPRLTFIGAIFLGLIAVLPDLLGAL-------GGFGGTSLLIAVGVALDT 338

Query: 564 RR 565
             
Sbjct: 339 YE 340

Length = 340
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 585
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 93.15
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=100.00  E-value=1e-89  Score=737.43  Aligned_cols=416  Identities=29%  Similarity=0.454  Sum_probs=344.6

Q ss_pred             hhhhhhhhh-hhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchhhcCchhHH
Q 007921          143 VLNNAAESF-FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQI  221 (585)
Q Consensus       143 ~~~~~~~~~-~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLfsLGI~PyI  221 (585)
                      ..|++..+. +.++++||++||++++++||+|++||+||+|.++..+.+.+...+.++.+...||++++|+|+|||+|||
T Consensus         5 ~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~PyI   84 (436)
T COG0201           5 LLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPYI   84 (436)
T ss_pred             hhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHHH
Confidence            457788876 4699999999999999999999999999999987654332221111111111256799999999999999


Q ss_pred             HHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhcccc--ccccccchhHHHHHHHHHHHH
Q 007921          222 VASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS--IYAASHSVKHVMVTAFLLVCG  299 (585)
Q Consensus       222 tAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~--~~~~~~~~~~~~~ivl~LvaG  299 (585)
                      |||||||||+...|.++|++||+|+||+|+|++|||+|+++|++||++++......+  ......+...+++++++|++|
T Consensus        85 TASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~G  164 (436)
T COG0201          85 TASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAG  164 (436)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHH
Confidence            999999999877999999999999999999999999999999999999975432111  111122355688999999999


Q ss_pred             HHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCC-CcchHHHHHHHHHHHHHHHHHhhheec
Q 007921          300 AMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGS-SVRWWPFMLGLLGVFTIVTMWAVVVTE  378 (585)
Q Consensus       300 s~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~-~~~~~~~li~~l~i~llii~~iv~v~~  378 (585)
                      +|++|||||+|||||+|||+||+|++||++++|+.+.+......     .+. ..++... +..+..+++++++++|+|+
T Consensus       165 t~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~-----~~~~~~~~l~~-l~~~~~~l~ii~~vvyve~  238 (436)
T COG0201         165 TMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALP-----TGALFLSILFL-LLLVLLTLAIIFLVVYVEQ  238 (436)
T ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHh-----cchhHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999887554331     221 1222211 2233345556777999999


Q ss_pred             eEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCCh-------hHHHHHHHcC
Q 007921          379 GCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-------FWQHVKEILN  451 (585)
Q Consensus       379 ~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~~-------~~~~l~~~l~  451 (585)
                      ++|||||||+|++         ..+++++|+|+|+||||+||+||||+++++|.+++++++++       |...+..+++
T Consensus       239 ~~r~IPI~y~~~~---------~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~  309 (436)
T COG0201         239 ARRRIPIQYAKRQ---------SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALS  309 (436)
T ss_pred             eEEEeehhhhhhh---------hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhcc
Confidence            9999999999753         23368899999999999999999999999999999999622       3345666666


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHH
Q 007921          452 PETSVGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILA  529 (585)
Q Consensus       452 p~~sl~~~~~i~~ily~~~ii~Fs~f~--i~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA  529 (585)
                      +.      .|+|..+|++++++|||||  +++||||+||||||+|.+|||+||||+|+|||+|+++|+|++||++++++|
T Consensus       310 ~~------~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~ia  383 (436)
T COG0201         310 PG------SPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIA  383 (436)
T ss_pred             CC------cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54      4899999999999999999  556899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007921          530 TSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRR  582 (585)
Q Consensus       530 ~lP~i~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~  582 (585)
                      ++|++++...+   ..+.+||||+||+||+++|+++|+++|+.+++|+.+.+.
T Consensus       384 ilp~l~~~~~~---~~~~~gGTslLI~V~V~l~~~~qi~~~l~~~~Y~~~~~~  433 (436)
T COG0201         384 ILPELLGTAGG---VPFYFGGTSLLIVVGVALDTYEQIEAELLMEKYPGLRRI  433 (436)
T ss_pred             HHHHHHHHhcC---CcccccCeeeeeehHHHHHHHHHHHHHHHHhhchhHHhh
Confidence            99999998643   347889999999999999999999999999999988554

>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query585
3dl8_G429 Structure Of The Complex Of Aquifex Aeolicus Secyeg 6e-40
3din_C431 Crystal Structure Of The Protein-Translocation Comp 3e-31
2zjs_Y434 Crystal Structure Of Secye Translocon From Thermus 2e-28
3j01_A435 Structure Of The Ribosome-Secye Complex In The Memb 5e-23
2akh_Y400 Normal Mode-Based Flexible Fitted Coordinates Of A 4e-16
>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 429 Back     alignment and structure 
Iteration: 1

 Score =  162 bits (409), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 135/445 (30%), Positives = 217/445 (48%), Gaps = 43/445 (9%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAEL-KL 210
            E+R++   T ++ VI R+G  IP+PG +   + +D+L    GSV  L D   G  L +L
Sbjct: 12  KELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDIFSGGNLGRL 70
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLD-GHEKIKSYIWWISLGFAILEAVI 269
           + F LG+ P I ASI+MQ+L   +PSL +L KE  D G  KI  Y  +++L  A ++++ 
Sbjct: 71  TVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLG 130
Query: 270 VACY----SLPYSIYAASH-SVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIIC 324
           +A +      P  I    +  +  +++T   LV G M + WI D I+E G G G+SLII 
Sbjct: 131 IAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIF 190
Query: 325 VGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKV 383
            GI+  +   + +         Y    +    P  L L+    I  +  +V V E  R++
Sbjct: 191 AGIVANFPNAVIQF--------YEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRI 242
Query: 384 KLQYYGFKLAS---AAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS 440
            +QY G ++     A R+         Y+P  INP+G+ P++    LL  PS L + + +
Sbjct: 243 PIQYPGRQVGRQLYAGRKT--------YLPIKINPAGVIPIIFAQALLLIPSTLLNFVQN 294
Query: 441 PFWQHVKEILNPETSVGARPWVYYT-IYAFFVFLFNIFDIANL--PKEIADYLNKMGARI 497
           PF + + ++  P    GA   ++Y  +Y  F+  F  F  A L  P E+A+ L+K GA I
Sbjct: 295 PFIKVIADMFQP----GA---IFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFI 347
Query: 498 PNVKPGKATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIV 557
           P V+PG+ T++YL +I     F+G                +    N  F  G T+ LI+V
Sbjct: 348 PGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYFGGTTALIVV 404
Query: 558 GSIIELRRSYQAYNVMPSLSKALRR 582
           G  ++  R  + Y +       +RR
Sbjct: 405 GVALDTFRQIETYLIQKKYKSYVRR 429
>pdb|3DIN|C Chain C, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 431 Back     alignment and structure
>pdb|2ZJS|Y Chain Y, Crystal Structure Of Secye Translocon From Thermus Thermophilus With A Fab Fragment Length = 434 Back     alignment and structure
>pdb|3J01|A Chain A, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 435 Back     alignment and structure
>pdb|2AKH|Y Chain Y, Normal Mode-Based Flexible Fitted Coordinates Of A Non- Translocating Secyeg Protein-Conducting Channel Into The Cryo-Em Map Of A Secyeg-Nascent Chain-70s Ribosome Complex From E. Coli Length = 400 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query585
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 3e-66
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 2e-65
3din_C431 Preprotein translocase subunit SECY; protein trans 7e-64
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 1e-63
1rh5_A436 Preprotein translocase SECY subunit; protein trans 3e-46
3mp7_A482 Preprotein translocase subunit SECY; protein trans 4e-45
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 2e-33
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 2e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure
 Score =  221 bits (565), Expect = 3e-66
 Identities = 129/445 (28%), Positives = 219/445 (49%), Gaps = 44/445 (9%)

Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
              ++ F+  E+R++   T ++ VI R+G  IP+PG +   + +D+L    GSV  L D 
Sbjct: 3   EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDI 61

Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISL 260
              G   +L+ F LG+ P I ASI+MQ+L   +PSL +L KE G  G  KI  Y  +++L
Sbjct: 62  FSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTL 121

Query: 261 GFAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 315
             A ++++ +A +     S        +  +  +++T   LV G M + WI D I+E G 
Sbjct: 122 FVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181

Query: 316 GQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV 375
           G G+SLII  GI+  +   + +   +         +       +L ++ +   + +  V 
Sbjct: 182 GNGASLIIFAGIVANFPNAVIQFYEK-------VKTGDIGPLTLLLIIALIIAIIVGIVY 234

Query: 376 VTEGCRKVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFP 431
           V E  R++ +QY     G +L +  +          Y+P  INP+G+ P++    LL  P
Sbjct: 235 VQEAERRIPIQYPGRQVGRQLYAGRKT---------YLPIKINPAGVIPIIFAQALLLIP 285

Query: 432 SILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIAD 488
           S L + + +PF + + ++  P          Y  +Y  F+  F  F  A   N P E+A+
Sbjct: 286 STLLNFVQNPFIKVIADMFQPGA------IFYNFLYVTFIVFFTYFYTAVLIN-PVELAE 338

Query: 489 YLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSI 548
            L+K GA IP V+PG+ T++YL +I     F+G L LS++A    ++  +    N  F  
Sbjct: 339 NLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYF 395

Query: 549 GFTSVLIIVGSIIELRRSYQAYNVM 573
           G T+ LI+VG  ++  R  + Y + 
Sbjct: 396 GGTTALIVVGVALDTFRQIETYLIQ 420
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Length = 434 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query585
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
Probab=100.00  E-value=8.3e-94  Score=772.09  Aligned_cols=414  Identities=27%  Similarity=0.452  Sum_probs=337.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccc-ccccc--ccccccchhhcCchhHHHHHH
Q 007921          149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVD-ELGDF--GAELKLSFFQLGISPQIVASI  225 (585)
Q Consensus       149 ~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~-~l~~~--ga~~~~SLfsLGI~PyItAsI  225 (585)
                      ..++++|+|+|++||++++++||+|++||+||+|.++.++. .+..+++++ +++.+  ||++++|+|+|||+|||||||
T Consensus         7 ~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~-~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItASI   85 (434)
T 2zjs_Y            7 SALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEF-LRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAI   85 (434)
T ss_dssp             HHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHH-HHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHH
T ss_pred             hHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHH-HhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHHH
Confidence            46778999999999999999999999999999999876442 222122344 33333  478999999999999999999


Q ss_pred             HHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhc-c-ccc-cccc--cchhHHHHHHHHHHHHH
Q 007921          226 LMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSL-P-YSI-YAAS--HSVKHVMVTAFLLVCGA  300 (585)
Q Consensus       226 I~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~-~-~~~-~~~~--~~~~~~~~ivl~LvaGs  300 (585)
                      |||||+.++|.++|++||||+||+|+|++|||+|+++|++||++++.... . ++. ...+  ++..+.++++++|++|+
T Consensus        86 I~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt  165 (434)
T 2zjs_Y           86 IMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGI  165 (434)
T ss_dssp             HHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHH
Confidence            99999989999999999999999999999999999999999999875421 1 121 1122  34446778999999999


Q ss_pred             HHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHhhheeceE
Q 007921          301 MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC  380 (585)
Q Consensus       301 ~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~~~~~~g~~~~~~~~li~~l~i~llii~~iv~v~~~~  380 (585)
                      |++|||||+|||||+|||+|++|++||++++|+.+.+.++..     ..++ .++.. ++..+++++++++++|++|+++
T Consensus       166 ~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~-----~~~~-~~~~~-~~~~l~~~~~vi~~vV~~~~~~  238 (434)
T 2zjs_Y          166 ALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLI-----RTGE-VNLVA-FLFFLAFIVLAFAGMAAVQQAE  238 (434)
T ss_dssp             HHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTT-----TTTS-SCHHH-HHHHHHHHHHHHHHHHHHHHCE
T ss_pred             HHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHh-----ccCc-ccHHH-HHHHHHHHHHHHHHHHHheeeE
Confidence            999999999999999999999999999999999988776533     1222 34432 2333445566677789999999


Q ss_pred             EEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhC-ChhHHHHHHHcCCCCCCCCc
Q 007921          381 RKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGAR  459 (585)
Q Consensus       381 rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~-~~~~~~l~~~l~p~~sl~~~  459 (585)
                      |||||||+++.  .++|   .++++++|+|+|+|++|+||+|||++++++|+++++++. ++|..++.++++|+      
T Consensus       239 rrIPvqyakr~--~gr~---~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~------  307 (434)
T 2zjs_Y          239 RRIPVQYARKV--VGGR---VYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPT------  307 (434)
T ss_dssp             EEEEEEECC------------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSS------
T ss_pred             EEEeehhhhhh--ccCc---ccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCC------
Confidence            99999999742  2222   456789999999999999999999999999999999764 45666688888875      


Q ss_pred             chHHHHHHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007921          460 PWVYYTIYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDH  537 (585)
Q Consensus       460 ~~i~~ily~~~ii~Fs~f~i--~~~PkeIAe~Lkk~G~~IpGvRPGk~T~~YL~kvi~rlt~~Ggl~L~~IA~lP~i~~~  537 (585)
                      +|+|.++|++++++|||||.  +.||||+||||||||++|||+||||+|++||+|+++|+|++||++++++|++|++++.
T Consensus       308 ~~~y~~~y~~lii~Fs~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~  387 (434)
T 2zjs_Y          308 RPSGLFIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQN  387 (434)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            38999999999999999994  4699999999999999999999999999999999999999999999999999999865


Q ss_pred             HhhccCCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 007921          538 YLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY  583 (585)
Q Consensus       538 ~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~  583 (585)
                      . .++. ++.+||||+||+||+++|++||+++++.+++|+++++|.
T Consensus       388 ~-~~~~-~~~~gGTslLI~VgV~ldt~~qi~s~~~~~~Y~~~~~~~  431 (434)
T 2zjs_Y          388 L-TGIH-SIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRG  431 (434)
T ss_dssp             H-SSCC-CGGGSSHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             h-cCcc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence            4 2121 567899999999999999999999999999999999874
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 585
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 7e-53
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  184 bits (468), Expect = 7e-53
 Identities = 68/433 (15%), Positives = 140/433 (32%), Gaps = 60/433 (13%)

Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
           +   + +L  T +++V+  I   I +     +        F            A    + 
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ--IPAIFEFWQT-------ITASRIGTL 69

Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
             LGI P + A I+MQ+L  +   ++Q+     +     +     +S+    +EAV+   
Sbjct: 70  ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL--- 124

Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYT 332
           +    +    +  +  +++    +  G++ + ++ + +S+ G G G  L I  G+     
Sbjct: 125 FVGAGAFGILTPLLAFLVI--IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 182

Query: 333 ETLYKMLSQLLVFKYTAGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL 392
                    L  F     S ++  P +  +  +   + ++ +VV   C +V++     + 
Sbjct: 183 VGALGPEGYLWKFL---NSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGR- 238

Query: 393 ASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI--- 449
                    I       P         PV+    L A   +    L       +      
Sbjct: 239 ---------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGG 289

Query: 450 ---------------LNPETSVGARPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLN 491
                          L+   S      VY         +F IF +      PK +A  + 
Sbjct: 290 RAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIG 349

Query: 492 KMGARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGF 550
            +G  I   +  +  IE+ L +            +  LAT +  +         G   G 
Sbjct: 350 SLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGG 400

Query: 551 TSVLIIVGSIIEL 563
           T VL+ V  +  +
Sbjct: 401 TGVLLTVSIVYRM 413

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query585
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.9e-84  Score=697.92  Aligned_cols=395  Identities=16%  Similarity=0.157  Sum_probs=308.8

Q ss_pred             hhhhhhh-hhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCcchhhhhhccCccccccccccccccchhhcC
Q 007921          138 IRLSSVL-NNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLG  216 (585)
Q Consensus       138 ~k~~~~~-~~~~~~~~k~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLfsLG  216 (585)
                      .+|+..+ ||+++|.+|.++|+|++||++++++||+|++||+||+|.+.. |        .+.+++.++|.+++|+|+||
T Consensus         3 ~~p~~~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~-~--------~~~~~~~~~a~~~~Sif~LG   73 (422)
T d1rh5a_           3 LIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-A--------IFEFWQTITASRIGTLITLG   73 (422)
T ss_dssp             THHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-S--------CCTTHHHHHTCCTTBTTTTT
T ss_pred             ccchhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCcc-c--------HHHHHHHHhccccccHHHhC
Confidence            4566656 999999999999999999999999999999999999998764 2        13344455678899999999


Q ss_pred             chhHHHHHHHHHHHHhHhhhHHHhhhcChhhHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Q 007921          217 ISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLL  296 (585)
Q Consensus       217 I~PyItAsII~QLL~~~~P~L~kl~keg~~gr~ki~~~tR~ltli~aiiQa~~i~~~~~~~~~~~~~~~~~~~~~ivl~L  296 (585)
                      |+|||||||+||+|+  .|++.++++|+++||+|+|++|||+|+++|++||++++. ...+.    ..+....++++++|
T Consensus        74 I~PyItASIImQLL~--~~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~-~~~~~----~~~~~~~~~iv~~L  146 (422)
T d1rh5a_          74 IGPIVTAGIIMQLLV--GSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVG-AGAFG----ILTPLLAFLVIIQI  146 (422)
T ss_dssp             THHHHHHHHHHHHHH--HHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSC----CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH--hhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccC----CCCchHHHHHHHHH
Confidence            999999999999997  479999999999999999999999999999999999863 22221    22334567889999


Q ss_pred             HHHHHHHHHHHhhhhhccCCCcchhHhHHHHhhHHHHHHHHHHHHHHH-hhhcCCCCcchHHHHHHHHHHHHHHHHHhhh
Q 007921          297 VCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLV-FKYTAGSSVRWWPFMLGLLGVFTIVTMWAVV  375 (585)
Q Consensus       297 vaGs~il~WL~E~Itk~GIGnGiSLiI~~gIi~~lp~~l~~~~~~~~~-~~~~~g~~~~~~~~li~~l~i~llii~~iv~  375 (585)
                      ++|+|++|||||+|||||+|||+||+|++||++++|+++.+....... ....... ...++.++ .+..+++++.++++
T Consensus       147 ~aGt~~lmwL~E~It~~GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~l~~~i~i~~~vv~  224 (422)
T d1rh5a_         147 AFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQG-VPNIEYIA-PIIGTIIVFLMVVY  224 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTT-CCCGGGTH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhcc-cchHHHHH-HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999976532111100 0000111 11122222 23334445667889


Q ss_pred             eeceEEEEEEeeccccccccccCCCCCCCCCCcccccccCCCcchHHHHHHHHHhHHHHHHHhCC------------hhH
Q 007921          376 VTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS------------PFW  443 (585)
Q Consensus       376 v~~~~rrIPIq~~~~~~~s~~r~~~~~~~~~syiPIKln~aGvMPIIfAssll~~p~~I~~~l~~------------~~~  443 (585)
                      +++++||||+||++.+            +.++|+|+|+|++|+||+|||++++++|+++++++.+            .+.
T Consensus       225 ~~~~~~~IPv~~~~~~------------~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~  292 (422)
T d1rh5a_         225 AECMRVEIPLAHGRIK------------GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAV  292 (422)
T ss_dssp             HTTCEEEEECCCSSST------------TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBS
T ss_pred             HHHhhhcccccccccc------------ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchH
Confidence            9999999999998642            4578999999999999999999999999999988721            123


Q ss_pred             HHHHHHcCCCCCCCC--c----chHHHHHHHHHHHHHHHHHh--c-cChHHHHHHHHHcCCccccccCChhhHH-HHHHh
Q 007921          444 QHVKEILNPETSVGA--R----PWVYYTIYAFFVFLFNIFDI--A-NLPKEIADYLNKMGARIPNVKPGKATIE-YLTKI  513 (585)
Q Consensus       444 ~~l~~~l~p~~sl~~--~----~~i~~ily~~~ii~Fs~f~i--~-~~PkeIAe~Lkk~G~~IpGvRPGk~T~~-YL~kv  513 (585)
                      +++.+|++++.++..  .    .++|.++|.+++++|++||.  . .||||+||||||||++|||+||||+|.+ ||+|+
T Consensus       293 ~~i~~~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~v  372 (422)
T d1rh5a_         293 DGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRY  372 (422)
T ss_dssp             SSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHH
T ss_pred             HHHHHHhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHH
Confidence            467788887765542  1    24667777888889999994  3 5899999999999999999999999966 69999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 007921          514 QASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYN  571 (585)
Q Consensus       514 i~rlt~~Ggl~L~~IA~lP~i~~~~~~~~~~~~~~ggTsLLIlVgvil~~~~qi~a~~  571 (585)
                      ++|+|++||++++++|++|++++.+         +||||+||+||+++|++||+++++
T Consensus       373 i~rit~~Ga~~l~~ia~~p~~l~~~---------~gGTslLI~V~v~l~~~~qi~~e~  421 (422)
T d1rh5a_         373 IPPLTVMSSAFVGFLATIANFIGAL---------GGGTGVLLTVSIVYRMYEQLLRER  421 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCT---------TCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998643         289999999999999999999875