Citrus Sinensis ID: 008170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
Protein Sequence
MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCIV
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccccEEEEEEcccccccccccccHHHccccccccccHHHHHHHHHcccEEccHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHccHHcEEEEccHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccHHHHHHHcccccccccHHHHHHHHHcccEEEEcccccHHccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHHcccccccccccccccccHHHHHHccccccEEEEccccHHccccccHHHHHHHHHHHHHHHHHHcEEEEEEEccHHHHHHHHcccccEEcEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccHHHHHHHEEEEEEEHccccccEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msksfniiktntsnpkVWVVIGVSVVGFVVLAETLrrrrnpklngrvdfgaflerfelipfpqppppaarqplaGLKFAIKDVfdvkgyvtgfgspdwkrdhheAERTAVVVTLLLKNgatcigktvldefafgitgenkhygtpvnpqmpshipggsssgSAVAVAAQLVDFAlgtdtigcvrvpasfcgilgyrpshgtvsmigvlpnsqsldtVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAddifqlskvpklktIHVISKAIESlsgyqnpehmnvgqyiasnvpslkglraqstspengTATLKALSSVMLSLQRYEFKTIYEEWVksakprlgyNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKddkilviptvsdpplklntkktysaefhdrtLVLSSIgsmsgccqvaipigkynehpiSISFITyhggdkflLDTVLDLYDSLQEQVNIAsnlvplpdtngsidASELLKEKgnaafkgkQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCIV
Flexible Loop (DISEMBL)
MSKSFNIIktntsnpkvwvVIGVSVVGFVVLaetlrrrrnpklngRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGfgspdwkrdhhEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFaddifqlskvpklktIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWvksakprlgYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRllkddkilviptvsdpplklntkktysaefHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIAsnlvplpdtNGSIDASELLKEKGnaafkgkqwNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKtisldkkvrarvgyvdcSMLIYLLCIV
Low Complexity Region (SEG)
MSKSFNIIKTNTSNPKvwvvigvsvvgfvvLAETLRRRRNPKLNGRVDFGAFLERFELIpfpqppppaarqpLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPggsssgsavavaaQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCIV
Disordered region (IsUnstruct)
******IIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPF**********PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHY********************AVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA**********************LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPD*********LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCI*
Disordered Region (DISOPRED)
***************KVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFE***************LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVN****************************FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCIV
Disordered Region (DISEMBL)
MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHI********AVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLK***********GTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCIV
Disordered Region (DISPRO)
*SKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSS********AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCIV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	575	2.2.26 [Sep-21-2011]
F4KCL7	603	Outer envelope protein 64	yes	no	0.961	0.917	0.645	0.0
Q9MUK5	593	Translocon at the outer m	N/A	no	0.928	0.900	0.503	1e-137
Q9LVH5	589	Outer envelope protein 64	no	no	0.886	0.865	0.513	1e-134
Q9FR37	425	Amidase 1 OS=Arabidopsis	no	no	0.716	0.969	0.477	1e-101
Q8PXJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.636	0.768	0.306	2e-30
Q8THJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.64	0.773	0.298	6e-30
Q2FQM9	431	Glutamyl-tRNA(Gln) amidot	yes	no	0.650	0.867	0.291	3e-29
Q9JTZ5	481	Glutamyl-tRNA(Gln) amidot	yes	no	0.321	0.384	0.401	5e-29
A9M003	481	Glutamyl-tRNA(Gln) amidot	yes	no	0.321	0.384	0.401	5e-29
B4RM85	481	Glutamyl-tRNA(Gln) amidot	yes	no	0.321	0.384	0.401	1e-28

>sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/556 (64%), Positives = 449/556 (80%), Gaps = 3/556 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS + ++I++N SNPKVWVVIGV+V G V+LAET R+RR   L    DFGAFL+RFEL+P
Sbjct: 1   MSNTLSLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIRALREE-DFGAFLDRFELLP 58

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FP PPPPAA+Q L+GL F+I D FDVK Y+TGFG P WK+ H  AE+TAVVVT LLKNGA
Sbjct: 59  FPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKT++DE  FGI GENKHYGTP+NP MP ++PGG SSGSAV+V A+LVDF+LG DT 
Sbjct: 119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           G VRVPA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct: 179 GGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
             RR R LIFADD+F+LS +PK K++ V+ KAIE+LSGY+ P+H+NVGQY+ASNVPSL  
Sbjct: 239 THRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAE 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS   +N  +TL+ALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct: 299 FCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSK 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS-AEFHDRTLVLSS 419
            ++IK LY+V+NEMRA +Q LLK+D ILVIPTV+DPP +LNTK+  S  EF DRT  LS 
Sbjct: 359 NESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSC 418

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
           I SMSGCCQV IP+G++ + PIS+S +TY+GGDKFLLDT LD+Y SLQ+Q  +ASNL P+
Sbjct: 419 IASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPV 478

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG+++ASE++KEKGNAA+KGKQWNKAVN+Y+EAIKLNG +ATYY NRAAA+LEL CF
Sbjct: 479 SDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCF 538

Query: 540 QQAEEDCSKTISLDKK 555
           QQAE+DC+K + +DKK
Sbjct: 539 QQAEQDCTKAMLIDKK 554

Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score =  489 bits (1259), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 272/540 (50%), Positives = 367/540 (67%), Gaps = 6/540 (1%)

Query: 16  KVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAG 75
           ++WV++G+ + G  VL   L +        + DFGAFL + +L+P P P PP A  PL+ 
Sbjct: 10  QIWVILGLGLAGIYVLTRKLTQAV------KEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query: 76  LKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGI 135
           L FAI D+FD++G+V+ FG P+W R H  A  TA  V+ L+++GATCIG TV+DE A+GI
Sbjct: 64  LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query: 136 TGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGY 195
           +GENKH+GTP NP +P+ +PGGSSSG+AVAVAA  VDF+LG DT G VRVPA FCGILG+
Sbjct: 124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query: 196 RPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIF 255
           RPSHG VS +G++P S SLDTVG  A++  +L RVGH+LLQ   V  R  R++I ADD F
Sbjct: 184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATL 315
           Q   VP  +T  V+ KA E L G Q  +H+N   YI+S V SLK    Q ++    +++L
Sbjct: 244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query: 316 KALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMR 375
           K L++VM SLQR+EF+  + EW+   KP L   V  ++ E    ++  I+    VR+E+R
Sbjct: 304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query: 376 AALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGK 435
            A+  LLKD+ +LVIPTV+DPP KL  K+  S ++  R L L SI S+SGCCQV +P+G 
Sbjct: 364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query: 436 YNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEK 495
           ++++P+S+S I  HGGD+FLLDT+  +Y  LQEQ +IA+             ++E+ KEK
Sbjct: 424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           GN A+K KQW KA+ +Y+EAIKL G +ATYYSNRA AYLELG + QAEEDC+  IS DKK
Sbjct: 484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.

Pisum sativum (taxid: 3888)

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  480 bits (1236), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 262/510 (51%), Positives = 343/510 (67%)

Query: 46  RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA 105
           R DFGAF+++  L+P PQP PP A  PL GL FA+ DVFD+ GYVTGFG PDW R H  A
Sbjct: 31  REDFGAFIDKLMLLPPPQPAPPKAPHPLTGLTFAVSDVFDITGYVTGFGHPDWVRTHEAA 90

Query: 106 ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVA 165
             T+ VV+ L++ GATC+GKTV+DEFAF I+GENKHY +P NP  P+ IPGG+ SG+AVA
Sbjct: 91  SSTSPVVSTLVEGGATCVGKTVVDEFAFSISGENKHYDSPTNPAAPTRIPGGACSGAAVA 150

Query: 166 VAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNAS 225
           VA   VDFALG DT+G VRVPA +CG+LG++ S+G +S  G++P S SLD+VG  AR+ +
Sbjct: 151 VATNAVDFALGIDTVGGVRVPAGYCGVLGFKSSYGAISNTGIIPVSSSLDSVGWFARDPN 210

Query: 226 ILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHM 285
            L RVGHVLLQL     R  R++I ADD FQL K+P  +   V++K+ E L G Q  +H 
Sbjct: 211 TLRRVGHVLLQLPFATQRNPRQIILADDCFQLLKIPVDRITQVVTKSAEKLFGRQLLKHQ 270

Query: 286 NVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRL 345
           N+  Y  + VPSLK             +T + L++VM  LQR+EF   + +W+ + KP +
Sbjct: 271 NLETYFETKVPSLKEFARTKAIANTKVSTSRLLANVMQLLQRHEFLQNHGDWINTVKPAI 330

Query: 346 GYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKT 405
              +  +V E    T +  + L  +RNE R A+  LLKDD ILVIPT+   P KL +K+ 
Sbjct: 331 DPVILSQVCENPELTNEETENLNAIRNETRVAIGSLLKDDGILVIPTLPAVPPKLGSKEI 390

Query: 406 YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465
            S ++ +R   L SI S+SGCCQV +P+G + + PIS+SFI  HGGD+FLLDTV  +Y S
Sbjct: 391 TSEDYQNRASSLLSIASISGCCQVTVPLGHHEKCPISVSFIGRHGGDRFLLDTVQTMYPS 450

Query: 466 LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY 525
           LQE  +I ++           +++E+ KEKGN AFK K W KA+  YSEAIKL+  +ATY
Sbjct: 451 LQEYSSIVTDPKSSKKAITKEESAEIAKEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATY 510

Query: 526 YSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           YSNRAAAYLELG F QAEEDC+K I+LDKK
Sbjct: 511 YSNRAAAYLELGGFLQAEEDCTKAITLDKK 540

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FR37|AMI1_ARATH Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/423 (47%), Positives = 261/423 (61%), Gaps = 11/423 (2%)

Query: 48  DFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
           DFGAF+E+  + P       ++   L GL FAIKD+FDV+G VTGFG+PDW R H  A  
Sbjct: 6   DFGAFIEKVTISPTSTS---SSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAATS 62

Query: 108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVA 167
           TA VV+ LL+ GAT +G T++DE A+ I GEN HYGTP NP     +PGGSSSGSAVAVA
Sbjct: 63  TAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVA 122

Query: 168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
           A+LVDF++GTDT G VRVPAS+CGI G+RPSHG VS +G+ P +QS DTVG  AR+ + L
Sbjct: 123 ARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTATL 182

Query: 228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIE-SLSGYQNPEHMN 286
            RVG VLLQ + + P    +LI ADD F+L  VP    +  +  ++E S  G    + +N
Sbjct: 183 KRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKKVN 242

Query: 287 VGQYIASNVPSLKGLRAQ---STSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKP 343
           +G+YI  NVPSLK        +T  E    +L ALSS M  LQR+EFK  +  W+ S KP
Sbjct: 243 LGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSVKP 302

Query: 344 RLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTK 403
             G  + ER+ EAI T+ + I     V++E+  AL  LL +  +LVIPTV  PP  L   
Sbjct: 303 EFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQAN 362

Query: 404 KTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLY 463
                 F  R   L SI  +SG CQV+IP+G +   P+S+S +  +G D FL    L L 
Sbjct: 363 VAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFL----LSLV 418

Query: 464 DSL 466
           DSL
Sbjct: 419 DSL 421

Amidase involved in auxin biosynthesis. Converts indole-3-acetamide into indole-3-acetic acid. Can also use L-asparagine, oleamide and 1-naphtalene-acetamide as substrates, but not indole-3-acetonitrile or indole-3-acetyl-L-aspartic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8PXJ1|GATA_METMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=gatA PE=3 SV=1

 Score =  134 bits (338), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 186/418 (44%), Gaps = 52/418 (12%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PLAG+  AIKD   V G     GS     + +     A V+  LL  GA  +GKT +DEF
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSK--ILEGYVPPFNAHVIEKLLSAGAVILGKTNMDEF 118

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           A G + E  H+G   NP     +PGGSS GSA  VAA    FALG+DT G VR PASFCG
Sbjct: 119 AMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPASFCG 178

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           ++G +P++G VS  GV+  + SL+ VG LA N   +     VL+ + A   RR    I +
Sbjct: 179 VVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDI----AVLMDVIAGYDRRDSTSIDS 234

Query: 252 DDIFQLSKVPKLKTIHV-ISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPEN 310
              +Q + V  +K + + + K       +    H +V + +   +   + L A  T  E 
Sbjct: 235 KTEYQKALVDDVKGLKIGVPKEF-----FGEGIHPDVEKAVWDAIHKCESLGA--TWEEV 287

Query: 311 GTATLK---------ALSSVMLSL-----QRYEFKTIYEEW----VKSAKPRLGYNVFER 352
               +K         A+S    +L      RY F+   E W     K+     G  V  R
Sbjct: 288 SMPHIKYALASYYIIAMSEASSNLARFDGTRYGFRAGGENWHAMVSKTRAEGFGTEVKRR 347

Query: 353 VLEAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS 407
           +L             Y     KVR  ++    + L    +L+ PT+ +P  K+  K    
Sbjct: 348 ILLGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSKVDLLMAPTMPNPAFKIGEK---- 403

Query: 408 AEFHD-RTLVLSSIGS----MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVL 460
               D  TL LS I +    ++G   +++P G  +  PI +  +    G  F  +TVL
Sbjct: 404 --IEDPLTLYLSDINTCPINLAGVPSISVPCGFTDGLPIGLQIM----GKPFDEETVL 455

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q8THJ1|GATA_METAC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=gatA PE=3 SV=1

 Score =  132 bits (333), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 184/416 (44%), Gaps = 48/416 (11%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PLAG+  AIKD   V G     GS     + +     A V+  LL  GA  +GKT LDEF
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSK--ILEGYVPPFNAHVIEKLLDAGAVILGKTNLDEF 118

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           A G + E  +YG   NP     +PGGSS GSA  VAA    FALG+DT G VR PA+FCG
Sbjct: 119 AMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCG 178

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           ++G +P++G VS  GV+  + SL+ VG LA N   +     +L+ + A   RR    I +
Sbjct: 179 VVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDI----AILMDVIAGYDRRDSTSIDS 234

Query: 252 DDIFQLSKVPKLKTIHV-ISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRA--QSTSP 308
              +Q + V  +K + + + K       +    H  V + + + +   + L A  Q  S 
Sbjct: 235 KTEYQKALVDDVKGLKIGVPKEF-----FGEGIHPGVEKAVWNAIHKFESLGATRQEVSM 289

Query: 309 ENGTATLKALSSVMLSL----------QRYEFKTIYEEW----VKSAKPRLGYNVFERVL 354
            N    L +   + +S            RY F+   E W     K+     G  V  R+L
Sbjct: 290 PNINYALASYYIIAMSEASSNLARFDGTRYGFRANGENWHAMVSKTRAEGFGTEVKRRIL 349

Query: 355 EAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAE 409
                        Y     KVR  ++    + L    +L+ PT+ +P  ++  K      
Sbjct: 350 LGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSTVDLLMAPTMPNPAFRIGEK------ 403

Query: 410 FHDR-TLVLSSIGS----MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVL 460
             D  TL LS + +    ++G   V++P G  +  P+ +  +    G  F   TVL
Sbjct: 404 IEDPLTLYLSDVNTCPINLAGVPSVSVPCGFTDGLPVGLQIM----GKPFDEPTVL 455

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q2FQM9|GATA_METHJ Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1

 Score =  130 bits (327), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 188/408 (46%), Gaps = 34/408 (8%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PL+G+  A+KD    KG  T   S   K   +     A VVTLL   GA  +GKT +DEF
Sbjct: 28  PLSGVTVAVKDNISTKGIETTCASKILK--GYIPPYDAHVVTLLKNAGAAIVGKTNMDEF 85

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
             G T EN  YG  +NP     +PGGSS GSA AVAA LVD A+G+DT G +R PA+FCG
Sbjct: 86  GMGTTTENSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTGGSIRCPAAFCG 145

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL--------------LQL 237
           I+G +P++G VS  G++  + SL+ +G +AR+   L  +  V+               + 
Sbjct: 146 IVGLKPTYGRVSRFGLIAYANSLEQIGPMARDVQTLSNLYSVIAGHDSRDATSVDKPYKH 205

Query: 238 NAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPS 297
           N V      ++   D+ F     P +    V+ +AI++L      E M     +   +PS
Sbjct: 206 NPVSDITGLKIGVPDEFFGEGVNPNVA--EVVRQAIDTL------ESMGA-TAVPCTIPS 256

Query: 298 LK-GLRAQS-TSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLE 355
           +K  L A   T     ++ L     V         K+ ++ + +  K   G  V  R++ 
Sbjct: 257 MKYALSAYYVTCTSEASSNLARFDGVRYGPAVGTLKSWHDAYSEQRKAGFGKEVRRRIIL 316

Query: 356 AINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF 410
              +        Y       R  +R   +R+ +D  ++  PT+ D   KL  K      +
Sbjct: 317 GTFSLAAGYYGRYYQKAQTARQMVRDDFERIFRDVDVIAGPTMPDIAFKLGEKSDPLQMY 376

Query: 411 HDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDT 458
               L + +  +++G   +++P GK N  P+ +  I  +  D+ ++DT
Sbjct: 377 LSDILTVPA--NLAGVPALSVPCGKINSMPVGLQLIGRYFEDERIIDT 422

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanospirillum hungatei (strain JF-1 / DSM 864) (taxid: 323259)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q9JTZ5|GATA_NEIMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=gatA PE=3 SV=1

 Score =  129 bits (325), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 38  RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPD 97
            +NP LNG +         E     +         L G+  A KD+F   G+ +   S  
Sbjct: 33  EKNPALNGYITIDQDKTLAEARAADERIAQGNASALTGIPVAYKDIFCQTGWRSACASK- 91

Query: 98  WKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGG 157
              D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+PGG
Sbjct: 92  -MLDNFISPYTATVVQKLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGG 150

Query: 158 SSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV 217
           SS GSA  VAA+L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  
Sbjct: 151 SSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQA 210

Query: 218 GLLARNA 224
           G +A+ A
Sbjct: 211 GPMAQTA 217

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A9M003|GATA_NEIM0 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C (strain 053442) GN=gatA PE=3 SV=1

 Score =  129 bits (325), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 38  RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPD 97
            +NP LNG +         E     +         L G+  A KD+F   G+ +   S  
Sbjct: 33  EKNPALNGYITIDQDKTLAEARAADERIAQGNASALTGIPVAYKDIFCQTGWRSACASK- 91

Query: 98  WKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGG 157
              D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+PGG
Sbjct: 92  -MLDNFISSYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGATKNPWNPEHVPGG 150

Query: 158 SSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV 217
           SS GSA  VAA+L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  
Sbjct: 151 SSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQA 210

Query: 218 GLLARNA 224
           G +A+ A
Sbjct: 211 GPMAQTA 217

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Neisseria meningitidis serogroup C (strain 053442) (taxid: 374833)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B4RM85|GATA_NEIG2 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria gonorrhoeae (strain NCCP11945) GN=gatA PE=3 SV=1

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 99/187 (52%), Gaps = 2/187 (1%)

Query: 38  RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPD 97
            +NP LNG +         E     +         L G+  A KD+F   G+ +   S  
Sbjct: 33  EKNPALNGYITIDQDKTLAEARAADERIAQGNASALTGVPVAYKDIFCQTGWRSACASK- 91

Query: 98  WKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGG 157
              D+  +  TA VV  LL  G   +G+T +DEFA G T EN  YG   NP  P H+PGG
Sbjct: 92  -MLDNFVSPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGG 150

Query: 158 SSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV 217
           SS GSA  VAA+L   ALG+DT G +R PAS CGI G +P++GTVS  G++  + S D  
Sbjct: 151 SSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQA 210

Query: 218 GLLARNA 224
           G +A+ A
Sbjct: 211 GPMAQTA 217

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Neisseria gonorrhoeae (strain NCCP11945) (taxid: 521006)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
449438199	606	PREDICTED: outer envelope protein 64, mi	0.991	0.940	0.693	0.0
255569802	607	amidase, putative [Ricinus communis] gi|	0.991	0.939	0.709	0.0
225448253	607	PREDICTED: outer envelope protein 64, mi	0.991	0.939	0.716	0.0
224054324	599	amidase family protein [Populus trichoca	0.977	0.938	0.690	0.0
356512046	603	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.987	0.941	0.673	0.0
297806973	621	hypothetical protein ARALYDRAFT_325494 [	0.961	0.890	0.649	0.0
356525874	598	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.953	0.916	0.681	0.0
30682691	603	translocon at the outer membrane of chlo	0.961	0.917	0.645	0.0
9955529	616	putative subunit of TOC complex [Arabido	0.961	0.897	0.645	0.0
356557561	665	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.953	0.824	0.687	0.0

>gi|449438199|ref|XP_004136877.1| PREDICTED: outer envelope protein 64, mitochondrial-like [Cucumis sativus]

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/574 (69%), Positives = 468/574 (81%), Gaps = 4/574 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS    ++KTN SNPK+W++IGV V G V+LAET RR RN K+    DFGAF++RFEL P
Sbjct: 1   MSNPLKLLKTNASNPKLWILIGVGVAGVVILAETRRRGRNGKVLQGEDFGAFIQRFELRP 60

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FPQP PPAARQ LAGL FA+KDVFDVK YVTGFG+PDWKR H  AE+T  +VTLLLKNGA
Sbjct: 61  FPQPSPPAARQSLAGLTFAVKDVFDVKDYVTGFGNPDWKRTHDVAEKTDEMVTLLLKNGA 120

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
            C+GKTV+DE  FGITGENK YGTP+NP++ S +PGGSSSGSAVAVA +LVDFALGTDT+
Sbjct: 121 ACVGKTVMDELGFGITGENKQYGTPINPKLSSFVPGGSSSGSAVAVAGELVDFALGTDTV 180

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           GC+R+PASFCGI  +RPSHG + M  VL NS SLDTVG  AR+ S LHRVGHVLL+LN+V
Sbjct: 181 GCIRIPASFCGIFAFRPSHGVIPMNRVLSNSPSLDTVGWFARDPSTLHRVGHVLLKLNSV 240

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
           EPRR RRL+ ADD+FQLSKVP  KT+HV+ KAIE+LSGYQ+P+HMN G+Y+ASNVPSLKG
Sbjct: 241 EPRRMRRLVIADDLFQLSKVPLQKTVHVVEKAIENLSGYQSPKHMNFGEYLASNVPSLKG 300

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS + + G   LKALSSVM+ LQR EFK  +EEW+KS KP+LG N  E VL AI T+
Sbjct: 301 FHNQSPTLQKGITILKALSSVMILLQRSEFKINHEEWIKSVKPKLGSNASEDVLAAIKTS 360

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSI 420
            D+IK LYKVR E R AL+ LLKDD ILVIPTV+DPP K +TKK  ++EF DRT  LSSI
Sbjct: 361 YDDIKTLYKVRMETRIALKSLLKDDGILVIPTVADPPPKFSTKKGIASEFRDRTFALSSI 420

Query: 421 GSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIAS-NLVPL 479
            SMSGCC+VA+P+GK ++ PISIS IT+HG DKFLLDTVLD++ +LQEQV +AS NL+P 
Sbjct: 421 SSMSGCCEVAVPLGKQDDCPISISLITFHGADKFLLDTVLDIFSALQEQVGVASNNLLPF 480

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG +DASELLKEKGNAAFKG+QWNKAVNYY++AIKLNGT+ATYY NRAAAYLELGCF
Sbjct: 481 ADTNGDMDASELLKEKGNAAFKGRQWNKAVNYYTDAIKLNGTNATYYCNRAAAYLELGCF 540

Query: 540 QQAEEDCSKTISLDKK-VRA--RVGYVDCSMLIY 570
           QQAE+DCSK I LDKK V+A  R G    S+L+Y
Sbjct: 541 QQAEDDCSKAILLDKKTVKAYLRRGTARESLLLY 574

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569802|ref|XP_002525865.1| amidase, putative [Ricinus communis] gi|223534870|gb|EEF36559.1| amidase, putative [Ricinus communis]

 Score =  825 bits (2131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/575 (70%), Positives = 486/575 (84%), Gaps = 5/575 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLN--GRVDFGAFLERFEL 58
           M+K   +IK + SNPKVW+VIGV+V G +V+AET RR R   L    R DFGAF+E+FE+
Sbjct: 1   MNKPLTLIKQHASNPKVWLVIGVTVAGIIVVAETRRRSRKAALMMIKREDFGAFIEKFEI 60

Query: 59  IPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKN 118
           +PFPQ PPPAA+QPL+GL FAIKD+FDVK YVTGFG+PDW+R H  AE+ AV VT LLKN
Sbjct: 61  LPFPQAPPPAAKQPLSGLSFAIKDIFDVKDYVTGFGNPDWRRTHEVAEKMAVAVTALLKN 120

Query: 119 GATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178
           GATC+GKT++DE   GI+GEN HYGTP+NP MPS +PGGSSSGSAV VAA+LVDFALGTD
Sbjct: 121 GATCVGKTIMDELGLGISGENLHYGTPMNPIMPSFVPGGSSSGSAVTVAAELVDFALGTD 180

Query: 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLN 238
           TIGC+R+PA+FCGI GYRPSHGTVSMIG +PN+QSLDTVG LAR+ SIL  VGH LL+LN
Sbjct: 181 TIGCIRIPAAFCGIFGYRPSHGTVSMIGAIPNAQSLDTVGWLARDPSILRCVGHALLKLN 240

Query: 239 AVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSL 298
           AVE R+ARR+IFADD+FQL KVPK KT +VISKAIE+LSGYQ+P+H+N GQYIASNVPSL
Sbjct: 241 AVEARKARRIIFADDLFQLCKVPKQKTEYVISKAIENLSGYQSPKHLNFGQYIASNVPSL 300

Query: 299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAIN 358
           KG   QS + ++GT+ LKALSSVM+SLQRYEFKT +EEWVKS KP+L  +V  RVL AIN
Sbjct: 301 KGFLEQSGNLQSGTSALKALSSVMVSLQRYEFKTNHEEWVKSVKPKLAPDVSNRVLAAIN 360

Query: 359 TTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLS 418
            T +N+K+LYK+R+EMRAA Q LLKDD ILVIPTV+DPPLKLNTKK YS E HDR ++LS
Sbjct: 361 ATYENVKVLYKIRSEMRAATQSLLKDDGILVIPTVADPPLKLNTKKGYSPESHDRVIILS 420

Query: 419 SIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVP 478
           SI SMSGCCQVA+P+GK+++ PIS+SFI++HG DKFLLDT++D+Y SLQ Q++I SN   
Sbjct: 421 SIASMSGCCQVAVPLGKHDDCPISVSFISFHGADKFLLDTIVDMYLSLQAQISIVSNSPL 480

Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC 538
           LPDTNG++DASELLKEKGNAAFKG +WNKAV+YY+EAIKLNG++AT+Y NRAAAYLELGC
Sbjct: 481 LPDTNGNMDASELLKEKGNAAFKGGKWNKAVDYYTEAIKLNGSNATFYCNRAAAYLELGC 540

Query: 539 FQQAEEDCSKTISLDKK-VRA--RVGYVDCSMLIY 570
           FQQAEEDCS  ISLDKK V+A  R G    S+L Y
Sbjct: 541 FQQAEEDCSMAISLDKKNVKAYLRRGTAKESLLYY 575

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448253|ref|XP_002268888.1| PREDICTED: outer envelope protein 64, mitochondrial [Vitis vinifera] gi|296086830|emb|CBI32979.3| unnamed protein product [Vitis vinifera]

 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/575 (71%), Positives = 470/575 (81%), Gaps = 5/575 (0%)

Query: 1   MSKSFNIIKT--NTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFEL 58
           MSK+ + +K   + SNPK W+VI   V G V+L ET RR+R   L  R   GAF+ERFEL
Sbjct: 1   MSKALHQLKKHIDVSNPKAWIVIAAGVAGIVILVETRRRKRRAALLTREGLGAFVERFEL 60

Query: 59  IPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKN 118
           +PFPQPPPPA+R  L+G KFA+ D+FDVKGYVTGFGS  WKR H EA +TAV VT LLKN
Sbjct: 61  LPFPQPPPPASRLLLSGFKFAVTDIFDVKGYVTGFGSTSWKRTHEEATKTAVAVTALLKN 120

Query: 119 GATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD 178
           GATC+GKTVLDE +FGITGEN  +G+P NP +PSHIPGGSSSGSAVAVA+QLVDFA+GTD
Sbjct: 121 GATCVGKTVLDELSFGITGENMDFGSPANPVLPSHIPGGSSSGSAVAVASQLVDFAIGTD 180

Query: 179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLN 238
           TIG VRVPASFCGILGYRPSHG VS IGVLP+SQSLDTVG  AR+ SILHRVGH+LLQ+N
Sbjct: 181 TIGGVRVPASFCGILGYRPSHGAVSTIGVLPSSQSLDTVGWFARDPSILHRVGHILLQIN 240

Query: 239 AVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSL 298
            VEPRR R L+ ADD+FQLSKVPK KT+HV++K  E+LSGYQ P+H+N GQYIASNVPSL
Sbjct: 241 PVEPRRVRNLMIADDLFQLSKVPKQKTVHVVNKVAENLSGYQPPKHVNFGQYIASNVPSL 300

Query: 299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAIN 358
           KG   QS + +NG + LKALSSVM+SLQR EFKT +EEWVKS KPRLG  V +RVL AIN
Sbjct: 301 KGFHEQSINVKNGISALKALSSVMISLQRCEFKTNHEEWVKSVKPRLGPEVSDRVLAAIN 360

Query: 359 TTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLS 418
           TT +NIKI YKVR EMRAAL  LLKDD ILVIPTV+DPPLKLN+KK   +EFHDR   L 
Sbjct: 361 TTHENIKIFYKVRTEMRAALHSLLKDDGILVIPTVADPPLKLNSKKAVFSEFHDRAFTLL 420

Query: 419 SIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVP 478
           SI SMSGCCQV +P+GK+ + PIS+SFI +HG DKFLLDTVLD+Y SLQEQ +I SN +P
Sbjct: 421 SIASMSGCCQVTVPLGKHEDFPISVSFIAFHGADKFLLDTVLDMYPSLQEQASITSNSLP 480

Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC 538
           LPDTNG +DASELLKEKGNAAFKG+QWNKAVNYY+EAIKLN T+ATYY NRAAAYLELGC
Sbjct: 481 LPDTNGDMDASELLKEKGNAAFKGRQWNKAVNYYTEAIKLNETNATYYCNRAAAYLELGC 540

Query: 539 FQQAEEDCSKTISLDKK-VRA--RVGYVDCSMLIY 570
           FQQA EDCSK I LDKK V+A  R G    S+L Y
Sbjct: 541 FQQAVEDCSKAILLDKKNVKAYLRRGTARESLLCY 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054324|ref|XP_002298203.1| amidase family protein [Populus trichocarpa] gi|222845461|gb|EEE83008.1| amidase family protein [Populus trichocarpa]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/571 (69%), Positives = 467/571 (81%), Gaps = 9/571 (1%)

Query: 5   FNIIKTNTSNPKVWV-VIGVSV-VGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFP 62
            N +K N  NPKVWV VIGV+V VG V  AET  RRR  K   + DFGAF++RF+++PFP
Sbjct: 1   MNTVKANIKNPKVWVLVIGVTVAVGMVAAAET--RRRKAKF--KEDFGAFVQRFQILPFP 56

Query: 63  QPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC 122
           QPPPPAA+Q LAGL FAI D+F+++ YVTGFG+PDW R H  AE+TAV VT LLKNGA C
Sbjct: 57  QPPPPAAKQTLAGLTFAINDIFELEDYVTGFGNPDWARTHEAAEKTAVTVTALLKNGAVC 116

Query: 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGC 182
           +GKTV+ E  FG++GEN HYGTP+NP+MP+H+PGGSSSGSAVAVAA LVDFALGTDTIGC
Sbjct: 117 VGKTVMGELGFGVSGENIHYGTPINPEMPAHVPGGSSSGSAVAVAAGLVDFALGTDTIGC 176

Query: 183 VRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
           +R+PA+FCG+L YRPSHG VS IG+LPNSQSLDTVG LAR+ SIL RVGH LL+LN VEP
Sbjct: 177 IRIPAAFCGLLSYRPSHGAVSTIGILPNSQSLDTVGWLARDPSILLRVGHTLLKLNTVEP 236

Query: 243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLR 302
           RRARRLIFADD+FQLSKVPK K   VI+KAIE+LSGYQ  +H+N GQ+I+ NVPSLKG  
Sbjct: 237 RRARRLIFADDLFQLSKVPKQKAEVVINKAIENLSGYQPQQHINFGQHISLNVPSLKGFL 296

Query: 303 AQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD 362
            QST+ +NG + LKALSS M+SLQR+EFKT +E+WVKS +P+L  +V + +L AINTT +
Sbjct: 297 DQSTNMQNGISNLKALSSAMVSLQRHEFKTNHEDWVKSVEPKLALDVSDNLLTAINTTHE 356

Query: 363 NIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS 422
           NIK L  +R E+RA +Q LLKDD ILVIPTV+DPP KLN+KK  + E H+R L+LSSI S
Sbjct: 357 NIKALCDIRKELRACMQILLKDDGILVIPTVADPPSKLNSKKRDTVESHNRALILSSIAS 416

Query: 423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDT 482
           MSGCCQV IP+GK +  PIS+SFIT+HGGDKFLLDTVLD+Y SL+EQ+N  SN  PL D 
Sbjct: 417 MSGCCQVTIPLGKNDGCPISVSFITFHGGDKFLLDTVLDMYSSLKEQINFLSNPAPLKDA 476

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
           N + DASELLKEKGNAA+KGKQWNKAVNYYSEAIKLNG +ATYYSNRAAAYL+LGCFQ+A
Sbjct: 477 NENFDASELLKEKGNAAYKGKQWNKAVNYYSEAIKLNGKNATYYSNRAAAYLQLGCFQKA 536

Query: 543 EEDCSKTISLDKK-VRA--RVGYVDCSMLIY 570
           EEDC+  ISLDKK V+A  R G    S+L Y
Sbjct: 537 EEDCNMAISLDKKNVKAYLRRGTARESLLFY 567

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512046|ref|XP_003524732.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/573 (67%), Positives = 461/573 (80%), Gaps = 5/573 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS+S  +IK + SNPK+W+VIG+ V G VVL ET RR R  K + + DFGAF+ERFEL+P
Sbjct: 1   MSQSLKLIKEHASNPKLWLVIGIGVAGIVVLVETRRRTRRGKTH-KQDFGAFVERFELLP 59

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FPQPPPPAA+Q L+ L FAI D FDVK YVTGFG+  WK  H  AE+TAVVVT LL +GA
Sbjct: 60  FPQPPPPAAKQSLSALTFAINDTFDVKDYVTGFGNSTWKSTHKAAEKTAVVVTALLMSGA 119

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKTV+DEF+FGI+GENK+YGTP +PQMPS   GGSS GSAVAVAA LVDFA+GTDT 
Sbjct: 120 TCVGKTVVDEFSFGISGENKYYGTPTHPQMPSCKLGGSSCGSAVAVAAGLVDFAVGTDTT 179

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           GCVR+PASFCGI G+RPSHG VS IGVLPN+QSLDT+G  AR+ SILHRVGHVLLQLN+V
Sbjct: 180 GCVRIPASFCGIFGFRPSHGAVSTIGVLPNAQSLDTIGWFARDPSILHRVGHVLLQLNSV 239

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
           E +R+R  IFADD+FQLSK+P   TI+VI KAIE++SGYQ P+H+N+ QYI S VPSL+ 
Sbjct: 240 ETKRSRHFIFADDLFQLSKIPTQNTIYVIGKAIENMSGYQAPKHLNLCQYIDSRVPSLR- 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
           L  QST  +N T+ LK LSSVMLSLQ YEFKT +EEWVKS K +LG  V + V+ AINTT
Sbjct: 299 LHQQSTHQQNETSILKTLSSVMLSLQGYEFKTNHEEWVKSLKYKLGCGVSDHVIAAINTT 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSI 420
            DNIK LYKVR EMR A Q LLKDD ILVIPTV+   LKLNTKK +S+EFHDRT  LSSI
Sbjct: 359 YDNIKALYKVRTEMRGAFQSLLKDDGILVIPTVAGSQLKLNTKKGFSSEFHDRTFALSSI 418

Query: 421 GSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLP 480
            S+SGCCQV IP+G +++  +S+SFI++HG DKFLLDT+LD+Y +LQEQV++ S  +PLP
Sbjct: 419 ASVSGCCQVTIPLGYHDDCSLSVSFISFHGADKFLLDTILDIYSTLQEQVSVGSYSLPLP 478

Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           + NG+ + SELLKEKGNAAFK +QW+KA++YYSEAIKLNGT+ TYY NRAAA+L+LGCFQ
Sbjct: 479 NINGNRETSELLKEKGNAAFKERQWSKALSYYSEAIKLNGTNTTYYCNRAAAHLKLGCFQ 538

Query: 541 QAEEDCSKTISLDKK-VRA--RVGYVDCSMLIY 570
           QA EDC K I LDKK V+A  R G    S+L Y
Sbjct: 539 QAAEDCGKAILLDKKNVKAYLRRGTARESLLCY 571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806973|ref|XP_002871370.1| hypothetical protein ARALYDRAFT_325494 [Arabidopsis lyrata subsp. lyrata] gi|297317207|gb|EFH47629.1| hypothetical protein ARALYDRAFT_325494 [Arabidopsis lyrata subsp. lyrata]

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/556 (64%), Positives = 451/556 (81%), Gaps = 3/556 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS +  +I++N SNPKVWVVIGV+V G V+LAET  R+R  K     DFGAFL+RFEL+P
Sbjct: 1   MSNTLTLIQSNASNPKVWVVIGVTVAGIVILAET--RKRRIKALREEDFGAFLDRFELLP 58

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FP PPPPAA+Q L+ L F+I D FDVK Y+TGFGSP WK+ H  AE+TAVVVT LLKNGA
Sbjct: 59  FPPPPPPAAKQSLSALTFSISDAFDVKDYITGFGSPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKT++DE  FGI GENKHYGTP+NP MPS++PGG SSGSAV+V A+LVDF+LG DT 
Sbjct: 119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPSNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           G VR+PA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct: 179 GGVRIPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
             RR R LIFADD+F+LS +PK K++HV+ KAIE+LSGYQ P+H+NVGQY+ASNVPSL  
Sbjct: 239 AHRRQRSLIFADDLFELSDIPKQKSVHVVRKAIENLSGYQTPKHVNVGQYVASNVPSLAE 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS   +N  +TLKALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct: 299 FCEQSGKSQNSASTLKALSSVMLAIQRHEFKTNHEEWSQTCKSFLGPRFSNDVVTALKSR 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS-AEFHDRTLVLSS 419
            ++IK LY+V+ EMRA +Q LLK+D ILVIPTV+DPP KLNTK   S  EF DRT  LSS
Sbjct: 359 NESIKSLYRVKTEMRATIQSLLKEDGILVIPTVADPPPKLNTKNKNSLNEFLDRTYALSS 418

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
           I SMSGCCQV IP+G++ + PIS+SF+TY+GGDKFLLDT+LD+Y SLQ+Q  +ASNL P+
Sbjct: 419 IASMSGCCQVTIPLGQHGDRPISVSFLTYYGGDKFLLDTILDVYASLQDQAKLASNLAPV 478

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG+++ASE++KEKGNAA+KG+QWNKAVN+Y+EAIKLNG +ATY+ NRAAA+LELGCF
Sbjct: 479 SDTNGNMEASEVMKEKGNAAYKGRQWNKAVNFYTEAIKLNGANATYFCNRAAAFLELGCF 538

Query: 540 QQAEEDCSKTISLDKK 555
           QQAE+DC++ + +DKK
Sbjct: 539 QQAEQDCTEAMLIDKK 554

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525874|ref|XP_003531546.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/555 (68%), Positives = 447/555 (80%), Gaps = 7/555 (1%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MSK     K N SNPK+W++IG+ + G VV+    RRRR+  L  + DFGAF+ER EL+P
Sbjct: 1   MSKMLK--KVNASNPKLWLLIGIGLAGAVVVVAETRRRRHRNLP-KEDFGAFVERIELLP 57

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
            PQP      Q L+ L FAIKD+FDVKGYVTGFG+P WK+ H EA +TA+V+T LL +GA
Sbjct: 58  IPQP---NQTQTLSALTFAIKDIFDVKGYVTGFGNPQWKKTHGEAGKTAIVITALLSDGA 114

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKTV+DEF+FGI+GENK YGTP NPQMPS IPGGSSSGSAVAVAA+LVDFA+GTDT 
Sbjct: 115 TCVGKTVMDEFSFGISGENKFYGTPTNPQMPSSIPGGSSSGSAVAVAARLVDFAIGTDTT 174

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           GCVR+PA+FCGILG+RPSHG +S IGVLPN+QSLDTVG  AR+ S+LHRVG VLL L +V
Sbjct: 175 GCVRIPAAFCGILGFRPSHGVISTIGVLPNAQSLDTVGWFARDPSVLHRVGLVLLPLTSV 234

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
           E +R RR+IFADD+FQLSK P  KT ++I KAIE+LSGYQ+ +HMN+ QYIASNVPSLKG
Sbjct: 235 ELKRTRRIIFADDLFQLSKAPSQKTAYIIGKAIENLSGYQSLQHMNLCQYIASNVPSLKG 294

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              + T  +NG + LKAL+SVM SLQ YEFKT +EEWVKS KPRLG  V ERV  A+N T
Sbjct: 295 FHEKLTQQQNGLSILKALTSVMFSLQGYEFKTNHEEWVKSVKPRLGRGVSERVNAAMNAT 354

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSI 420
            DNIK LYKVR EMR A Q LLKDD ILVIPTV+D PLKLNT+K +S+EFHDR   LSSI
Sbjct: 355 HDNIKTLYKVRTEMRGAFQHLLKDDGILVIPTVADYPLKLNTEKGFSSEFHDRAFALSSI 414

Query: 421 GSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLP 480
            S+SGCCQVAIP+G +N+   SIS I+ HG DKFLL+TVLD+Y +LQEQV++A  L PL 
Sbjct: 415 ASISGCCQVAIPLGCHNDCCASISLISAHGVDKFLLNTVLDMYSTLQEQVSVAYAL-PLL 473

Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           DTNGS++ SELLKEKGN AFKG+ WNKAV+YY+EAI LNGT+ATYYSNRAAAYLELGCFQ
Sbjct: 474 DTNGSMETSELLKEKGNTAFKGRLWNKAVDYYTEAINLNGTNATYYSNRAAAYLELGCFQ 533

Query: 541 QAEEDCSKTISLDKK 555
           +AEEDC+  I  DKK
Sbjct: 534 EAEEDCNMAILHDKK 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682691|ref|NP_196504.2| translocon at the outer membrane of chloroplasts 64-V [Arabidopsis thaliana] gi|357580466|sp|F4KCL7.1|OE64M_ARATH RecName: Full=Outer envelope protein 64, mitochondrial; AltName: Full=Mitochondrial outer membrane protein 64; Short=mtOM64; AltName: Full=Translocon at the outer membrane of chloroplasts 64-V; Short=AtTOC64-V gi|332004008|gb|AED91391.1| translocon at the outer membrane of chloroplasts 64-V [Arabidopsis thaliana]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/556 (64%), Positives = 449/556 (80%), Gaps = 3/556 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS + ++I++N SNPKVWVVIGV+V G V+LAET R+RR   L    DFGAFL+RFEL+P
Sbjct: 1   MSNTLSLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIRALREE-DFGAFLDRFELLP 58

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FP PPPPAA+Q L+GL F+I D FDVK Y+TGFG P WK+ H  AE+TAVVVT LLKNGA
Sbjct: 59  FPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKT++DE  FGI GENKHYGTP+NP MP ++PGG SSGSAV+V A+LVDF+LG DT 
Sbjct: 119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           G VRVPA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct: 179 GGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
             RR R LIFADD+F+LS +PK K++ V+ KAIE+LSGY+ P+H+NVGQY+ASNVPSL  
Sbjct: 239 THRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAE 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS   +N  +TL+ALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct: 299 FCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSK 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS-AEFHDRTLVLSS 419
            ++IK LY+V+NEMRA +Q LLK+D ILVIPTV+DPP +LNTK+  S  EF DRT  LS 
Sbjct: 359 NESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSC 418

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
           I SMSGCCQV IP+G++ + PIS+S +TY+GGDKFLLDT LD+Y SLQ+Q  +ASNL P+
Sbjct: 419 IASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPV 478

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG+++ASE++KEKGNAA+KGKQWNKAVN+Y+EAIKLNG +ATYY NRAAA+LEL CF
Sbjct: 479 SDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCF 538

Query: 540 QQAEEDCSKTISLDKK 555
           QQAE+DC+K + +DKK
Sbjct: 539 QQAEQDCTKAMLIDKK 554

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9955529|emb|CAC05468.1| putative subunit of TOC complex [Arabidopsis thaliana]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/556 (64%), Positives = 449/556 (80%), Gaps = 3/556 (0%)

Query: 1   MSKSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIP 60
           MS + ++I++N SNPKVWVVIGV+V G V+LAET R+RR   L    DFGAFL+RFEL+P
Sbjct: 1   MSNTLSLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIRALREE-DFGAFLDRFELLP 58

Query: 61  FPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
           FP PPPPAA+Q L+GL F+I D FDVK Y+TGFG P WK+ H  AE+TAVVVT LLKNGA
Sbjct: 59  FPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
           TC+GKT++DE  FGI GENKHYGTP+NP MP ++PGG SSGSAV+V A+LVDF+LG DT 
Sbjct: 119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
           G VRVPA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct: 179 GGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query: 241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
             RR R LIFADD+F+LS +PK K++ V+ KAIE+LSGY+ P+H+NVGQY+ASNVPSL  
Sbjct: 239 THRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAE 298

Query: 301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
              QS   +N  +TL+ALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct: 299 FCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSK 358

Query: 361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA-EFHDRTLVLSS 419
            ++IK LY+V+NEMRA +Q LLK+D ILVIPTV+DPP +LNTK+  S  EF DRT  LS 
Sbjct: 359 NESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSC 418

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
           I SMSGCCQV IP+G++ + PIS+S +TY+GGDKFLLDT LD+Y SLQ+Q  +ASNL P+
Sbjct: 419 IASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPV 478

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
            DTNG+++ASE++KEKGNAA+KGKQWNKAVN+Y+EAIKLNG +ATYY NRAAA+LEL CF
Sbjct: 479 SDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCF 538

Query: 540 QQAEEDCSKTISLDKK 555
           QQAE+DC+K + +DKK
Sbjct: 539 QQAEQDCTKAMLIDKK 554

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557561|ref|XP_003547084.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/553 (68%), Positives = 450/553 (81%), Gaps = 5/553 (0%)

Query: 3   KSFNIIKTNTSNPKVWVVIGVSVVGFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFP 62
           KS  +IK N SNPK+W++IG+ +VG VV+    RRRR  KL  + DFGAF+ERFEL+P P
Sbjct: 68  KSLTLIKVNPSNPKLWLLIGIGLVGAVVVVAETRRRRRRKL-PKPDFGAFVERFELLPIP 126

Query: 63  QPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC 122
           QP      Q L+ L FAIKD+FDVKGYVTGFG+P WK+ H+EA +TA+V+T LL NGATC
Sbjct: 127 QP---NQTQTLSALTFAIKDIFDVKGYVTGFGNPQWKKMHNEAGKTAIVITALLSNGATC 183

Query: 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGC 182
           +GKTV+DEF+FGI+GENK YGTP NPQMPS IPGGSSSGSAVAVAA+LVDFA+GTDT GC
Sbjct: 184 VGKTVMDEFSFGISGENKFYGTPTNPQMPSSIPGGSSSGSAVAVAARLVDFAMGTDTTGC 243

Query: 183 VRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
           VR+PA+FCGILG+RPSHG +S IGVLPN+QSLDTVG  AR+ S+LHRVG VLL LN+VE 
Sbjct: 244 VRIPAAFCGILGFRPSHGVISTIGVLPNAQSLDTVGWFARDPSVLHRVGLVLLPLNSVEL 303

Query: 243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLR 302
           +R RR+IFADD+FQL K P  KT+++I KAIE+LSGYQ P+HMN+ QYIASNVPSLK  R
Sbjct: 304 KRTRRIIFADDLFQLCKAPSQKTVYIIGKAIENLSGYQFPQHMNLCQYIASNVPSLKEFR 363

Query: 303 AQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD 362
            + T  +NG + LKAL+SVM  LQ YEFKT +EEWVKS KPRLG  + ERV  A+N T D
Sbjct: 364 EKFTHQQNGVSILKALTSVMFYLQGYEFKTNHEEWVKSVKPRLGRGMSERVNAAMNATHD 423

Query: 363 NIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS 422
           NIK LYKVR EM  A Q LLKDD ILVIPTV+D PLKLNT+K +S+EF DR   LSSI S
Sbjct: 424 NIKTLYKVRTEMWGAFQHLLKDDGILVIPTVADYPLKLNTEKGFSSEFGDRAFALSSIAS 483

Query: 423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDT 482
           +SGCCQVAIP+G +N+   S+S I+ HG DKFLL+TVLD+Y +LQEQV++A  L PLPDT
Sbjct: 484 ISGCCQVAIPLGCHNDCCASVSLISAHGADKFLLNTVLDMYSTLQEQVSVAYAL-PLPDT 542

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
           NGS+  SELLKEKGNAAFKG+ WNKAV+YY+EAI LNGT+ATYYSNRAAAYLELGCFQ+A
Sbjct: 543 NGSMGTSELLKEKGNAAFKGRLWNKAVDYYTEAINLNGTNATYYSNRAAAYLELGCFQEA 602

Query: 543 EEDCSKTISLDKK 555
           EEDC+  I  DKK
Sbjct: 603 EEDCNMAILHDKK 615

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
TAIR|locus:2184757	603	TOC64-V "AT5G09420" [Arabidops	0.966	0.922	0.591	1.2e-175
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.888	0.861	0.484	6.1e-126
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.918	0.896	0.474	1.5e-124
TAIR|locus:2036029	425	AMI1 "AT1G08980" [Arabidopsis	0.711	0.962	0.444	3.3e-86
UNIPROTKB|Q60AB7	341	MCA0950 "Amidase family protei	0.213	0.360	0.520	2.8e-41
CGD|CAL0003013	450	orf19.3956 [Candida albicans (	0.290	0.371	0.333	3e-22
TIGR_CMR|CBU_1474	483	CBU_1474 "glutamyl-tRNA(Gln) a	0.313	0.372	0.356	7.2e-21
SGD|S000004907	464	HER2 "Subunit of the trimeric	0.292	0.362	0.375	2e-20
TIGR_CMR|CJE_1202	453	CJE_1202 "aspartyl/glutamyl-tR	0.723	0.918	0.233	3.2e-19
UNIPROTKB|Q936X3	457	atzE "Biuret hydrolase" [Pseud	0.257	0.323	0.395	5.7e-19

TAIR|locus:2184757 TOC64-V "AT5G09420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
 Identities = 331/560 (59%), Positives = 418/560 (74%)

Query:     1 MSKSFNIIKTNTSNPKXXXXXXXXXXXXXXLAETLRRRRNPKLNGRVDFGAFLERFELIX 60
             MS + ++I++N SNPK              LAET R+RR   L    DFGAFL+RFEL+ 
Sbjct:     1 MSNTLSLIQSNASNPKVWVVIGVTVAGIVILAET-RKRRIRALREE-DFGAFLDRFELLP 58

Query:    61 XXXXXXXXXXXXLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
                         L+GL F+I D FDVK Y+TGFG P WK+ H  AE+TAVVVT LLKNGA
Sbjct:    59 FPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGA 118

Query:   121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTI 180
             TC+GKT++DE  FGI GENKHYGTP+NP MP ++P             +LVDF+LG DT 
Sbjct:   119 TCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTT 178

Query:   181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV 240
             G VRVPA+FCGILG+RPS GTVS +GVLPNSQSL+TVG  A + S+L +VGH LL L+AV
Sbjct:   179 GGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAV 238

Query:   241 EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKG 300
               RR R LIFADD+F+LS +PK K++ V+ KAIE+LSGY+ P+H+NVGQY+ASNVPSL  
Sbjct:   239 THRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAE 298

Query:   301 LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT 360
                QS   +N  +TL+ALSSVML++QR+EFKT +EEW ++ K  LG      V+ A+ + 
Sbjct:   299 FCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSK 358

Query:   361 QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSA-EFHDRTLVLSS 419
              ++IK LY+V+NEMRA +Q LLK+D ILVIPTV+DPP +LNTK+  S  EF DRT  LS 
Sbjct:   359 NESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSC 418

Query:   420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPL 479
             I SMSGCCQV IP+G++ + PIS+S +TY+GGDKFLLDT LD+Y SLQ+Q  +ASNL P+
Sbjct:   419 IASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPV 478

Query:   480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
              DTNG+++ASE++KEKGNAA+KGKQWNKAVN+Y+EAIKLNG +ATYY NRAAA+LEL CF
Sbjct:   479 SDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCF 538

Query:   540 QQAEEDCSKTISLDKK-VRA 558
             QQAE+DC+K + +DKK V+A
Sbjct:   539 QQAEQDCTKAMLIDKKNVKA 558

GO:0004040 "amidase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
 Identities = 248/512 (48%), Positives = 335/512 (65%)

Query:    48 DFGAFLERFELIXXXXXXXXXXXXXLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
             DFGAFL + +L+             L+ L FAI D+FD++G+V+ FG P+W R H  A  
Sbjct:    36 DFGAFLLKLKLLPPPPPAPPKAPHPLSSLNFAISDIFDIEGHVSTFGHPEWARTHEPASS 95

Query:   108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXX 167
             TA  V+ L+++GATCIG TV+DE A+GI+GENKH+GTP NP +P+ +P            
Sbjct:    96 TASAVSALVESGATCIGTTVVDELAYGISGENKHFGTPTNPAVPNRVPGGSSSGAAVAVA 155

Query:   168 XQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
                VDF+LG DT G VRVPA FCGILG+RPSHG VS +G++P S SLDTVG  A++  +L
Sbjct:   156 ANFVDFSLGVDTSGGVRVPAGFCGILGFRPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVL 215

Query:   228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNV 287
              RVGH+LLQ   V  R  R++I ADD FQ   VP  +T  V+ KA E L G Q  +H+N 
Sbjct:   216 RRVGHILLQAPFVMQRNPRQIIIADDCFQHLNVPLDRTSQVVIKATEKLFGKQVLKHINF 275

Query:   288 GQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGY 347
               YI+S V SLK    Q ++    +++LK L++VM SLQR+EF+  + EW+   KP L  
Sbjct:   276 EDYISSKVSSLKACSIQKSNGVLKSSSLKLLANVMQSLQRHEFEHTHSEWMSIVKPDLHP 335

Query:   348 NVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS 407
              V  ++ E    ++  I+    VR+E+R A+  LLKD+ +LVIPTV+DPP KL  K+  S
Sbjct:   336 AVSAQLHEKFEVSELEIENSKSVRSELRVAVNSLLKDEGVLVIPTVADPPPKLGGKEFLS 395

Query:   408 AEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ 467
              ++  R L L SI S+SGCCQV +P+G ++++P+S+S I  HGGD+FLLDT+  +Y  LQ
Sbjct:   396 HDYQSRALSLLSIASISGCCQVTVPLGFFDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQ 455

Query:   468 EQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYS 527
             EQ +IA+             ++E+ KEKGN A+K KQW KA+ +Y+EAIKL G +ATYYS
Sbjct:   456 EQADIAAPSKSSKSVVSKEQSAEISKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYS 515

Query:   528 NRAAAYLELGCFQQAEEDCSKTISLDKK-VRA 558
             NRA AYLELG + QAEEDC+  IS DKK V+A
Sbjct:   516 NRAQAYLELGSYLQAEEDCTTAISFDKKNVKA 547

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
 Identities = 251/529 (47%), Positives = 332/529 (62%)

Query:    31 LAETLRRRRNPKLNGRVDFGAFLERFELIXXXXXXXXXXXXXLAGLKFAIKDVFDVKGYV 90
             LA  L   +  K   R DFGAF+++  L+             L GL FA+ DVFD+ GYV
Sbjct:    16 LAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTGLTFAVSDVFDITGYV 75

Query:    91 TGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQM 150
             TGFG PDW R H  A  T+ VV+ L++ GATC+GKTV+DEFAF I+GENKHY +P NP  
Sbjct:    76 TGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSISGENKHYDSPTNPAA 135

Query:   151 PSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPN 210
             P+ IP               VDFALG DT+G VRVPA +CG+LG++ S+G +S  G++P 
Sbjct:   136 PTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGFKSSYGAISNTGIIPV 195

Query:   211 SQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVIS 270
             S SLD+VG  AR+ + L RVGHVLLQL     R  R++I ADD FQL K+P  +   V++
Sbjct:   196 SSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCFQLLKIPVDRITQVVT 255

Query:   271 KAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEF 330
             K+ E L G Q  +H N+  Y  + VPSLK             +T + L++VM  LQR+EF
Sbjct:   256 KSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTSRLLANVMQLLQRHEF 315

Query:   331 KTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVI 390
                + +W+ + KP +   +  +V E    T +  + L  +RNE R A+  LLKDD ILVI
Sbjct:   316 LQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETRVAIGSLLKDDGILVI 375

Query:   391 PTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHG 450
             PT+   P KL +K+  S ++ +R   L SI S+SGCCQV +P+G + + PIS+SFI  HG
Sbjct:   376 PTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGHHEKCPISVSFIGRHG 435

Query:   451 GDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVN 510
             GD+FLLDTV  +Y SLQE  +I ++           +++E+ KEKGN AFK K W KA+ 
Sbjct:   436 GDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEKGNQAFKEKLWQKAIG 495

Query:   511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-VRA 558
              YSEAIKL+  +ATYYSNRAAAYLELG F QAEEDC+K I+LDKK V+A
Sbjct:   496 LYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKA 544

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2036029 AMI1 "AT1G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 185/416 (44%), Positives = 242/416 (58%)

Query:    48 DFGAFLERFELIXXXXXXXXXXXXXLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
             DFGAF+E+   +             L GL FAIKD+FDV+G VTGFG+PDW R H  A  
Sbjct:     6 DFGAFIEK---VTISPTSTSSSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAATS 62

Query:   108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXX 167
             TA VV+ LL+ GAT +G T++DE A+ I GEN HYGTP NP     +P            
Sbjct:    63 TAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVA 122

Query:   168 XQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
              +LVDF++GTDT G VRVPAS+CGI G+RPSHG VS +G+ P +QS DTVG  AR+ + L
Sbjct:   123 ARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTATL 182

Query:   228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIE-SLSGYQNPEHMN 286
              RVG VLLQ + + P    +LI ADD F+L  VP    +  +  ++E S  G    + +N
Sbjct:   183 KRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKKVN 242

Query:   287 VGQYIASNVPSLKGLRAQ---STSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKP 343
             +G+YI  NVPSLK        +T  E    +L ALSS M  LQR+EFK  +  W+ S KP
Sbjct:   243 LGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSVKP 302

Query:   344 RLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTK 403
               G  + ER+ EAI T+ + I     V++E+  AL  LL +  +LVIPTV  PP  L   
Sbjct:   303 EFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQAN 362

Query:   404 KTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTV 459
                   F  R   L SI  +SG CQV+IP+G +   P+S+S +  +G D FLL  V
Sbjct:   363 VAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLV 418

GO:0004040 "amidase activity" evidence=ISS;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IDA

GO:0043864 "indoleacetamide hydrolase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q60AB7 MCA0950 "Amidase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 325 (119.5 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
 Identities = 64/123 (52%), Positives = 76/123 (61%)

Query:   116 LKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFAL 175
             L+ GA C+GKT  DE AFG+TGEN  YGTP+NP  P  +P               VDFAL
Sbjct:     7 LQAGAVCLGKTCADELAFGLTGENAFYGTPLNPAAPDRVPGGSSSGSAVAVAAGEVDFAL 66

Query:   176 GTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLL 235
             GTDT G +R+PAS CGI G RPSHG VS+ GV P +   DTVG  ARN   L RV  +LL
Sbjct:    67 GTDTAGSIRLPASNCGIWGMRPSHGGVSVAGVNPLAPGFDTVGAFARNGETLQRVMSLLL 126

Query:   236 QLN 238
              ++
Sbjct:   127 NVD 129

GO:0008150 "biological_process" evidence=ND

CGD|CAL0003013 orf19.3956 [Candida albicans (taxid:5476)]

 Score = 282 (104.3 bits), Expect = 3.0e-22, P = 3.0e-22
 Identities = 57/171 (33%), Positives = 95/171 (55%)

Query:    73 LAGLKFAIKD-VFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
             L+G  + +KD +    GY T          ++E+   A+++ LL  NG+  IGK+ LDEF
Sbjct:    39 LSGTTYIVKDNIATSHGYTTAASKI---LSNYESPFNAMIIDLLSSNGSKLIGKSNLDEF 95

Query:   132 AFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCG 191
               G    N ++    NP   + +P             ++  F++GTDT G VR+PAS+C 
Sbjct:    96 GMGSANYNSYFNKVTNPYDNTKVPGGSSGGSAASVAGKMCSFSIGTDTGGSVRLPASYCN 155

Query:   192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
             + G++P++G +S  GV+P +Q+LDTVG++  N +I+ RV  VL + +  +P
Sbjct:   156 VFGFKPTYGRISRWGVIPYAQTLDTVGIIGENVNIIKRVYDVLNKYDDKDP 206

GO:0005739 "mitochondrion" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 256 (95.2 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
 Identities = 67/188 (35%), Positives = 88/188 (46%)

Query:    40 NPKLNGRVDFGAFLERFELIXXXXXXXXXX---XXXLAGLKFAIKDVFDVKGYVTGFGSP 96
             NP LN    F +  E + L                 L G+  A KD+F  K   T  GS 
Sbjct:    35 NPTLNS---FISITEEYALTQAKAADARLAKGEATSLTGIPIAQKDIFCTKDIKTSCGSK 91

Query:    97 DWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPX 156
                 D+  A   A VV  L K GA  IGKT +DEFA G + EN ++G   NP     +P 
Sbjct:    92 --MLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFAMGSSNENSYFGAVKNPWDLERVPG 149

Query:   157 XXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDT 216
                         +LV  A GTDT G +R PA+ CGI G +P++G VS  G++  + SLD 
Sbjct:   150 GSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQ 209

Query:   217 VGLLARNA 224
              G +A+ A
Sbjct:   210 AGPMAQTA 217

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

SGD|S000004907 HER2 "Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 260 (96.6 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
 Identities = 65/173 (37%), Positives = 92/173 (53%)

Query:    73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
             L G   +IKD    K + T   S     ++ ++   A VV LL + G   +GKT LDEF 
Sbjct:    44 LTGCVASIKDNIVTKDFPTTCASHIL--ENFKSPFDATVVKLLKQAGVHILGKTNLDEFG 101

Query:   133 FGITGENKHYGTPVNPQMPSH---IPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASF 189
              G  G +   G  +NP  P     I               LVDFALGTDT G VR+PA +
Sbjct:   102 MGSGGVHSIRGPVINPLYPHEDKKIMGGSSSGAAASVACDLVDFALGTDTGGSVRLPACY 161

Query:   190 CGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
               +LG++PS+G +S  GV+  SQSLDTVG+L++  ++L +V H L + +  +P
Sbjct:   162 GSVLGFKPSYGRLSRFGVIAYSQSLDTVGILSKKINVLRKVFHTLDKYDMKDP 214

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA;IDA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007029 "endoplasmic reticulum organization" evidence=IGI

TIGR_CMR|CJE_1202 CJE_1202 "aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 256 (95.2 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 104/446 (23%), Positives = 179/446 (40%)

Query:    33 ETLRRRRNPKLNGRVDFGAFLERFELIXXXXXXXXXXXXXLAGLKFAIKDVFDVKGYVTG 92
             E L++  N K       GA++E+F                  G+  AIKD   VKG+   
Sbjct:    16 ENLKKELNEKAKKEKKIGAYIEQF--------LDKDLSVSGEGVPVAIKDNISVKGWELT 67

Query:    93 FGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPS 152
               S   +   + A   A V+  L  NG +  G+  +DEFA G +  + +YG  +NP    
Sbjct:    68 SASKILQG--YIAPYDASVIVNLKANGFSPFGRCNMDEFAMGSSTASSYYGKTLNPLNFE 125

Query:   153 HIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQ 212
              +P              L   +LG+DT G VR PA+FCG +G++PS+G VS  G+   S 
Sbjct:   126 RVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSS 185

Query:   213 SLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKA 272
             SLD +G+L +N      +   +   + ++   A  + F      L+   KLK I VI   
Sbjct:   186 SLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSAN-IEFIKTAPNLNANKKLK-IAVIENY 243

Query:   273 IESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE--- 329
             +           +     + +N   +       +  +     + A +    +L RY+   
Sbjct:   244 VNDADSEVKNALLKTIDMLKANGHEIVYKNLLDSKFDIAAYYIIATAEASTNLSRYDGVR 303

Query:   330 -------FKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILY-----KVRNEMRAA 377
                     + + E +V +     G  V  R+L             Y     K R  ++A 
Sbjct:   304 YGKRSENIQNLKEMYVNTRSEGFGEEVKRRILLGTFVLSSGYYDAYYIKAQKARAFIKAK 363

Query:   378 LQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYN 437
              + +L+D  ++ +P       K +T+K+    + +    +S   +++G   +++P+ K  
Sbjct:   364 YEEILQDCDLIFMPVTPTTAFKFDTQKSPIQTYLEDVYTISV--NLAGLGGISVPVAKDK 421

Query:   438 EH-PISISFITYHGGDKFLLDTVLDL 462
             E   IS   I     ++ LLD  L L
Sbjct:   422 EGLNISAQLICKAYDEQTLLDGALSL 447

GO:0006422 "aspartyl-tRNA aminoacylation" evidence=ISS

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q936X3 atzE "Biuret hydrolase" [Pseudomonas sp. ADP (taxid:47660)]

 Score = 254 (94.5 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 59/149 (39%), Positives = 78/149 (52%)

Query:    73 LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
             LAGL +A+K++FD++G  T  GS    R    A   AV+V  L   GA  +G   +DEFA
Sbjct:    66 LAGLPYAVKNLFDIEGVTTLAGSKI-NRTLPPARADAVLVQRLKAAGAVLLGGLNMDEFA 124

Query:   133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
             +G T EN HYG   NP     I                V  +LG+DT G +RVPAS CG+
Sbjct:   125 YGFTTENTHYGPTRNPHDTGRIAGGSSGGSGAAIAAGQVPLSLGSDTNGSIRVPASLCGV 184

Query:   193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLA 221
              G +P+ G +S  G  P   S+D +G LA
Sbjct:   185 WGLKPTFGRLSRRGTYPFVHSIDHLGPLA 213

GO:0018750 "biuret amidohydrolase activity" evidence=IDA

GO:0019381 "atrazine catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MUK5	TOC64_PEA	No assigned EC number	0.5037	0.9286	0.9005	N/A	no
F4KCL7	OE64M_ARATH	No assigned EC number	0.6456	0.9617	0.9170	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000238001 SubName- Full=Chromosome chr12 scaffold_103, whole genome shotgun sequence; (607 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	575
PLN02722	422	PLN02722, PLN02722, indole-3-acetamide amidohydrol	1e-164
PRK08310	395	PRK08310, PRK08310, amidase; Provisional	1e-116
COG0154	475	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf	5e-71
pfam01425	431	pfam01425, Amidase, Amidase	2e-59
TIGR00132	460	TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a	5e-51
PRK00012	459	PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf	4e-48
PRK09201	465	PRK09201, PRK09201, amidase; Provisional	6e-48
PRK07056	454	PRK07056, PRK07056, amidase; Provisional	5e-47
PRK06102	452	PRK06102, PRK06102, hypothetical protein; Provisio	4e-46
TIGR02715	452	TIGR02715, amido_AtzE, amidohydrolase, AtzE family	8e-46
TIGR02713	561	TIGR02713, allophanate_hyd, allophanate hydrolase	1e-44
PRK08186	600	PRK08186, PRK08186, allophanate hydrolase; Provisi	2e-44
PRK07488	472	PRK07488, PRK07488, indole acetimide hydrolase; Va	8e-42
PRK05962	424	PRK05962, PRK05962, amidase; Validated	4e-37
PRK07139	439	PRK07139, PRK07139, amidase; Provisional	2e-31
PRK06170	490	PRK06170, PRK06170, amidase; Provisional	9e-29
PRK07235	502	PRK07235, PRK07235, amidase; Provisional	2e-28
PRK07486	484	PRK07486, PRK07486, amidase; Provisional	3e-26
PRK06169	466	PRK06169, PRK06169, putative amidase; Provisional	1e-24
PRK12470	462	PRK12470, PRK12470, amidase; Provisional	1e-23
PRK06061	483	PRK06061, PRK06061, amidase; Provisional	2e-23
PRK07869	468	PRK07869, PRK07869, amidase; Provisional	2e-22
PRK08137	497	PRK08137, PRK08137, amidase; Provisional	4e-22
PRK06707	536	PRK06707, PRK06707, amidase; Provisional	3e-21
PRK07487	469	PRK07487, PRK07487, amidase; Provisional	2e-20
PRK06828	491	PRK06828, PRK06828, amidase; Provisional	4e-18
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-16
PRK11910	615	PRK11910, PRK11910, amidase; Provisional	1e-15
PRK07042	464	PRK07042, PRK07042, amidase; Provisional	4e-14
PRK06565	566	PRK06565, PRK06565, amidase; Validated	5e-14
PRK06529	482	PRK06529, PRK06529, amidase; Provisional	5e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-09
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	5e-07
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.002
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.003

>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase

 Score =  473 bits (1220), Expect = e-164
 Identities = 213/421 (50%), Positives = 277/421 (65%), Gaps = 6/421 (1%)

Query: 48  DFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
           D+GAF+E+F L     P   +   PL GL FA+KD+FDV+GYVTGFG+PDW R H  A  
Sbjct: 6   DYGAFMEKFVL----SPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATS 61

Query: 108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVA 167
           TA  V  +L+ GATC+GKT++DE A+ I GEN HYGTP NP  P  +PGGSSSGSAVAV 
Sbjct: 62  TAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVG 121

Query: 168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
           A+LVDF+LGTDT G VRVPAS+CGI G+RPSHG VS +GV+P +QS DTVG  AR+  IL
Sbjct: 122 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVIL 181

Query: 228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN-PEHMN 286
            RVGHVLLQ   V P +  ++I A+D FQLS +P  + + V+ K++E L G  +  +H+N
Sbjct: 182 KRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHVN 241

Query: 287 VGQYIASNVPSLKG-LRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRL 345
           +G Y+   VPSLK  +  +    E    +L ALSS M  LQRYEFK  + EW+ + KP  
Sbjct: 242 LGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEF 301

Query: 346 GYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKT 405
           G  + ER+ EA+ TT++ I     V+ E+RAAL  LL +  +LVIPTV  PP KL    T
Sbjct: 302 GPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPT 361

Query: 406 YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS 465
               F  R   L SI  +SG CQV+IP+G ++  P+S+S +  HG D FLL+ V  LY +
Sbjct: 362 TLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYGT 421

Query: 466 L 466
           +
Sbjct: 422 I 422

Length = 422

>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional

 Score =  351 bits (902), Expect = e-116
 Identities = 156/410 (38%), Positives = 204/410 (49%), Gaps = 32/410 (7%)

Query: 49  FGAFLERFELIPFPQPPPPAARQ-PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAER 107
           F AF      I  P  P P A   PLAGL+FA+KDVFDV GYVTG G+PDW  +   A R
Sbjct: 7   FNAF------IAKPDKPLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATR 60

Query: 108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVA 167
           TA  V  LL  GA  +GKT  DE AF + G+N HYGTPVNP  P  +PGGSSSGSA AVA
Sbjct: 61  TAPAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVA 120

Query: 168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASIL 227
             L DFALGTDT G VR PASFCG+ G RP+HG +S+ GV+P + S DTVG  AR+ ++L
Sbjct: 121 GGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALL 180

Query: 228 HRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNV 287
            RVG VLL  +A E    +RL+   D+F L                       +P    V
Sbjct: 181 ERVGEVLLGDDAQEFPLTQRLLIPVDLFALL----------------------DPA---V 215

Query: 288 GQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGY 347
              + + +  L+     +        +L         LQ  E    +  W+ S  P+LG 
Sbjct: 216 RAALEAALARLRPHLGPAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGP 275

Query: 348 NVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS 407
            V +R       T D ++     R      L  LL  D +L++PTV              
Sbjct: 276 GVADRFAAGAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEAL 335

Query: 408 AEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD 457
             + +R L L  I  ++G  Q+++P+   +  P  +S I   G D+ LL 
Sbjct: 336 EAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLA 385

Length = 395

>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

 Score =  235 bits (602), Expect = 5e-71
 Identities = 120/448 (26%), Positives = 185/448 (41%), Gaps = 37/448 (8%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAA---------RQPLAGLKF 78
           ++   L R    NP LN      AF+              AA           PLAG+  
Sbjct: 26  LVEAYLARIEALNPDLN------AFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPI 79

Query: 79  AIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGE 138
           A+KD  D  G  T  GS   +   +     A VV  L   GA  +GKT +DEFA G + E
Sbjct: 80  AVKDNIDTAGLPTTAGSKALE--DYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTE 137

Query: 139 NKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPS 198
           N  +G   NP     +PGGSS GSA AVAA LV  ALG+DT G +R+PA+FCG++G +P+
Sbjct: 138 NSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPT 197

Query: 199 HGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLS 258
           +G VS  GV+P + SLD +G LAR       +  V+   +  +            +    
Sbjct: 198 YGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVPPAL--AG 255

Query: 259 KVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQ----STSPENGTAT 314
           K  K   I V  +      G   P   +V     + V +L+   A+    S    +    
Sbjct: 256 KDLKGLRIGVPKE-----LGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDYA 310

Query: 315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLE-AINTTQDNIKILYK--VR 371
           L A        +RY  +   + + K+     G  V  R++      +       Y+   +
Sbjct: 311 LAAYYLARFDGERYGLRAA-DLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQK 369

Query: 372 NEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY--SAEFHDRTLVLSSIGSMSGCCQV 429
             +R A  +L ++  +L+ PT   P  K+   ++            V +   +++G   +
Sbjct: 370 TLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAI 429

Query: 430 AIPIGKYNEH-PISISFITYHGGDKFLL 456
           ++P G   +  P+ +  I     D  LL
Sbjct: 430 SVPAGFTADGLPVGLQLIGPAFDDATLL 457

Length = 475

>gnl|CDD|216494 pfam01425, Amidase, Amidase

 Score =  203 bits (519), Expect = 2e-59
 Identities = 119/406 (29%), Positives = 177/406 (43%), Gaps = 41/406 (10%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PL G+  ++KD  DVKG  T  GS   +   +     A VV  L   GA  +GKT +DEF
Sbjct: 46  PLHGVPISLKDNIDVKGVPTTAGSKALE--GYPPPYDATVVERLRAAGAVILGKTNMDEF 103

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           A G T EN  +G   NP   S  PGGSS GSA AVAA LV  A+GTDT G +R+PA+FCG
Sbjct: 104 AMGSTTENSAFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCG 163

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           ++G +P++G VS  GV+P S SLD VG LAR       +  V+   +  +P  A   +  
Sbjct: 164 LVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVP- 222

Query: 252 DDIFQLSKVPKLKTIHV----------------ISKAIESLSGYQ-NPEHMNVGQYIASN 294
           D    L K  K   I V                + KA  +L         +     +   
Sbjct: 223 DFAEPLKKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAAALEALGHEVVEVEPP-SLKHA 281

Query: 295 VPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVL 354
           +P          +P   ++ L  L  +   ++    + + +E     K R+   +    L
Sbjct: 282 LPLYYI-----IAPAEASSNLSDLDELYPRIRD---ELLGDEV----KRRIE--LGAYAL 327

Query: 355 EAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRT 414
            A  +    +K   KVR  +R     L ++  +L+ PT   P  +L      S       
Sbjct: 328 SAGYSGAYYLK-AQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLGE-AADSPTVLYNL 385

Query: 415 LVL---SSIGSMSGCCQVAIPIG-KYNEHPISISFITYHGGDKFLL 456
           L     +   +++G   +++P G   +  P+ +  I   G D+ LL
Sbjct: 386 LDFTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431

Length = 431

>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

 Score =  181 bits (461), Expect = 5e-51
 Identities = 116/414 (28%), Positives = 180/414 (43%), Gaps = 44/414 (10%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGS---PDWKRDHHEAERTAVVVTLLLKNGATCIGKTVL 128
           PLAG+  A+KD    KG VT   S    ++   +      A V+  L + GA  IGKT +
Sbjct: 55  PLAGIPIAVKDNISTKGIVTTCASKILENYIPPYD-----ATVIERLKQAGALIIGKTNM 109

Query: 129 DEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPAS 188
           DEFA G + E   +G   NP     +PGGSS GSA AVAA L  F+LG+DT G +R PAS
Sbjct: 110 DEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPAS 169

Query: 189 FCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRL 248
           FCG++G++P++G VS  G++  + SLD +G  AR    +  +  V+   +  +   A+  
Sbjct: 170 FCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKV- 228

Query: 249 IFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQST-- 306
              D  F       LK + V    ++  S   + E         + +  L+ L A+    
Sbjct: 229 --PDPEFFEELKKDLKGLKV--GVVKEFSEEMDKEVQEK---FENALEVLEELGAEIVEV 281

Query: 307 ---SPENGTATLKALSSVMLS--LQRY----------EFKTIYEEWVKSAKPRLGYNVFE 351
                +        +S    S  L RY          E  ++ E + K+     G  V  
Sbjct: 282 SFPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKR 341

Query: 352 R-VLEAINTTQDNIKILY----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY 406
           R +L     +       Y    KVR  +     +L ++  ++V PT    P K+  K   
Sbjct: 342 RIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDD 401

Query: 407 SAEFH--DRTLVLSSIGSMSGCCQVAIPIGKYNEH-PISISFITYHGGDKFLLD 457
             E +  D   +L+   +++G   +++P G   +  PI +  I     DK LL 
Sbjct: 402 PLEMYLSD---ILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQ 452

In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species [Protein synthesis, tRNA aminoacylation]. Length = 460

>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

 Score =  173 bits (442), Expect = 4e-48
 Identities = 73/175 (41%), Positives = 94/175 (53%), Gaps = 25/175 (14%)

Query: 72  PLAGLKFAIKDVFDVKGYVT--------GFGSP-DWKRDHHEAERTAVVVTLLLKNGATC 122
           PLAG+  AIKD    KG  T         +  P D           A VV  L   GA  
Sbjct: 55  PLAGIPIAIKDNICTKGIRTTCASKILENYVPPYD-----------ATVVEKLKAAGAVI 103

Query: 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGC 182
           +GKT +DEFA G + EN  +G   NP     +PGGSS GSA AVAA L   ALG+DT G 
Sbjct: 104 LGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGS 163

Query: 183 VRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
           +R PA+FCG++G +P++G VS  G++  + SLD +G  AR    A++L     GH
Sbjct: 164 IRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGH 218

Length = 459

>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional

 Score =  173 bits (441), Expect = 6e-48
 Identities = 81/172 (47%), Positives = 100/172 (58%), Gaps = 6/172 (3%)

Query: 63  QPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC 122
           +P  P     LAG+ FA+K++FDV G  T  GS    RD   A R A  V  L   GA  
Sbjct: 67  EPLGP-----LAGVPFAVKNLFDVAGLTTLAGS-KINRDRPPATRDATAVRRLEAAGAVL 120

Query: 123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGC 182
           +G   +DE+A+G T EN HYG   NP   + I GGSS GSA AVAA LV F LG+DT G 
Sbjct: 121 VGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGS 180

Query: 183 VRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 234
           +RVPAS CGI G +P++G +S  G  P   SLD +G  AR+ + L  V  VL
Sbjct: 181 IRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVL 232

Length = 465

>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional

 Score =  170 bits (433), Expect = 5e-47
 Identities = 76/170 (44%), Positives = 102/170 (60%), Gaps = 8/170 (4%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
           AA  PLAG+  ++KD+FDV G VT  GS     D   A   A  V  L + GA  IG+T 
Sbjct: 67  AAPSPLAGIPVSVKDLFDVAGQVTRAGSRVLA-DAPPAAADAPAVARLRRAGAVLIGRTN 125

Query: 128 LDEFAFGITGENKHYGTPVNPQM----PSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCV 183
           + EFAF   G N HYGTP NP         IPGGSSSG+AV+VA  +   ALGTDT G +
Sbjct: 126 MTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGSI 185

Query: 184 RVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV 230
           R+PA+ CG+ G++P+   V + G +P S +LD++G LAR+    +++  V
Sbjct: 186 RIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAV 235

Length = 454

>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional

 Score =  168 bits (427), Expect = 4e-46
 Identities = 81/153 (52%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
            L G+  A KD+FDV G VT  GS     +   A R A VV LL + G   IG+T + EF
Sbjct: 69  LLDGIPIAWKDLFDVAGSVTTAGSV-VLANAAPASRDAAVVALLARAGMVSIGRTNMSEF 127

Query: 132 AFGITGENKHYGTPVNPQMPSH--IPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASF 189
           AF   G N HYGTPVNP+      IPGGSSSGSAVAVAA LV  A+GTDT G VR+PA+F
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187

Query: 190 CGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
            G++GY+ + G  SM GV P ++SLD++G L R
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCR 220

Length = 452

>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family

 Score =  167 bits (424), Expect = 8e-46
 Identities = 79/163 (48%), Positives = 100/163 (61%), Gaps = 1/163 (0%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PLAG+ FA+K++FDV G  T  G+    RD   A+R A +V  L   GA  +G   +DEF
Sbjct: 64  PLAGVPFAVKNLFDVAGLTTLAGA-KINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEF 122

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           A+G T EN HYG   NP   + I GGSS GSA AVAA LV F+LG+DT G +RVPAS CG
Sbjct: 123 AYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCG 182

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVL 234
           + G +P++G +S  GV P   SLD VG  AR+   L     V+
Sbjct: 183 VFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVM 225

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease [Unknown function, Enzymes of unknown specificity]. Length = 452

>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase

 Score =  166 bits (422), Expect = 1e-44
 Identities = 78/177 (44%), Positives = 99/177 (55%), Gaps = 3/177 (1%)

Query: 66  PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGK 125
               R PL G+ FA+KD  DV G  T    P +    +  E  A VV LL   GA  +GK
Sbjct: 25  ARPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIVVGK 81

Query: 126 TVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRV 185
           T LD+FA G+ G    YG   N   P++I GGSSSGSAVAVA  LV FALGTDT G  RV
Sbjct: 82  TNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRV 141

Query: 186 PASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
           PA+   I+G +P+ G VS  GV+P  +SLD V + A   +   +V  +    +A +P
Sbjct: 142 PAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDP 198

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase [Central intermediary metabolism, Nitrogen metabolism]. Length = 561

>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional

 Score =  166 bits (422), Expect = 2e-44
 Identities = 78/181 (43%), Positives = 98/181 (54%), Gaps = 4/181 (2%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
            A  PL G+ FA+KD  DV G  T    P +       ER A VV  L   GA  IGKT 
Sbjct: 64  PAALPLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PERDATVVARLRAAGAIVIGKTN 120

Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
           LD+FA G+ G    YG   N   P ++ GGSSSGSAVAVA  LV FALGTDT G  RVPA
Sbjct: 121 LDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAGSGRVPA 180

Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARR 247
           +F  I+G +P+ G +S  GV+P  ++LD V + A        V  V+   +  +P  +R 
Sbjct: 181 AFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADP-YSRA 239

Query: 248 L 248
            
Sbjct: 240 N 240

Length = 600

>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated

 Score =  156 bits (397), Expect = 8e-42
 Identities = 77/194 (39%), Positives = 94/194 (48%), Gaps = 4/194 (2%)

Query: 31  LAETL--RRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKG 88
           L E L  R      LN      A                 A   LAG+   IKD  +  G
Sbjct: 30  LVEALLARAAALAPLNAFTTVDAEGALAAARRIDAQRAAGAALLLAGVPIVIKDNINTAG 89

Query: 89  YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNP 148
             T  G+P            A VV  LL  GA  +GK  + E AFGIT  N  +G   NP
Sbjct: 90  MPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNP 147

Query: 149 QMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL 208
             P+ I GGSS G+A AVAA+L    LGTDT G VR+PA+ CG++G RP+ G  S  GV+
Sbjct: 148 YDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVV 207

Query: 209 PNSQSLDTVGLLAR 222
           P S + DTVG +AR
Sbjct: 208 PISHTRDTVGPIAR 221

Length = 472

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score =  142 bits (360), Expect = 4e-37
 Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 1/151 (0%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PL G   +IKD+FDV G  T  GS   +RD   A   A++V  L   GA  IGKT + EF
Sbjct: 45  PLDGRIVSIKDLFDVAGEPTLAGSV-IRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEF 103

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           AF   G N HYG P N   P+ IPGGSSSG+AV+VA    + A+G+DT G VR+PA+  G
Sbjct: 104 AFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNG 163

Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
           ++G++P+   + + G  P S SLD++G LAR
Sbjct: 164 LVGFKPTARRIPLEGAFPLSPSLDSIGPLAR 194

Length = 424

>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional

 Score =  126 bits (318), Expect = 2e-31
 Identities = 101/399 (25%), Positives = 163/399 (40%), Gaps = 49/399 (12%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWK--RDHHEAERTAVVVTLLLKNGATCIGKTVLD 129
           PLA   F IKD F      T   S   +  +  + A     VV  L+  GA  + K   D
Sbjct: 36  PLANCVFTIKDNFATSEGPTHASSKSLENFKPSYNA----TVVQKLINAGAKPVAKVHCD 91

Query: 130 EFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASF 189
           E   G TG    +G   NP   S + GGSSSGSA A   + + FA+G+DT   VR+PASF
Sbjct: 92  ELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSA-ATFNKNISFAIGSDTGDSVRLPASF 150

Query: 190 CGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLI 249
            G +G++PS+G +S  G+   + SLDTV     N +    +  VL        +    L 
Sbjct: 151 IGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFG------KDENDLT 204

Query: 250 FADDIFQLSKVPKLKTIHVIS--------------KAIESLSGYQNPEHMNVGQYIASNV 295
             D      K  K K +  +               K I  L      +  N+        
Sbjct: 205 SVDVKINNVKKTKPKKVAYLDCFKELEEYVAKKYKKLINIL------KSENIEVEKIK-- 256

Query: 296 PSLKGLRAQST-----SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVF 350
              K L+A        S    ++ L  L+ +     R +  +  E  + +     G  V 
Sbjct: 257 IDEKLLKAIKPVYKIISYSEASSNLANLNGIAFG-NREKGSSWEEIMINTRSEGFGKMVQ 315

Query: 351 ER-VLEAINTTQDNIKILY----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKT 405
           +R +L +    ++N +  +    KVR  ++   + +     I++ P  +D    ++  + 
Sbjct: 316 KRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENEN 375

Query: 406 YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISIS 444
            S  + D  L   +I ++ G   ++IP+GKYN  P +++
Sbjct: 376 KSDNYMDYIL---TISNLVGNPSLSIPLGKYNNLPFNLA 411

Length = 439

>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional

 Score =  119 bits (300), Expect = 9e-29
 Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 9/166 (5%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVL 128
            R PL G+   +K+ F+V G  T +G PD +   +     AV V  L   GA  +GKT +
Sbjct: 72  ERGPLLGIPVTVKESFNVAGLPTTWGFPDLR--DYVPAEDAVAVARLKAAGAVILGKTNV 129

Query: 129 DEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPAS 188
                     N+ YGT  NP   +  PGGSS GSA A+AA     ++G+D  G +RVPA 
Sbjct: 130 PLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAH 189

Query: 189 FCGILGYRPSHGTVSMIG-------VLPNSQSLDTVGLLARNASIL 227
           +CG+  ++P+ G V + G        LP    L   G +AR+A  L
Sbjct: 190 YCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDL 235

Length = 490

>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional

 Score =  118 bits (298), Expect = 2e-28
 Identities = 62/166 (37%), Positives = 82/166 (49%), Gaps = 18/166 (10%)

Query: 66  PPAARQPLAGLKFAIKDVFDVKGYVTGFGS-------PDWKRDHHEAERTAVVVTLLLKN 118
             AA   LAG   A+KD   V G     GS       P            A VVT LL  
Sbjct: 81  KGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEGFVPS---------FDATVVTRLLDA 131

Query: 119 GATCIGKTVLDEFAFGITGENKHYGTPV-NPQMPSHIPGGSSSGSAVAVAAQLVDFALGT 177
           GAT +GK   ++  F   G +     PV NP+ P +  GGSSSGSA  VAA  VD A+G 
Sbjct: 132 GATIVGKATCEDLCFS-GGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGG 190

Query: 178 DTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN 223
           D  G +R+P+++CGI G +P+HG V   G  P  +++D +G +   
Sbjct: 191 DQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTAT 236

Length = 502

>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional

 Score =  111 bits (280), Expect = 3e-26
 Identities = 69/203 (33%), Positives = 92/203 (45%), Gaps = 15/203 (7%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFP-----QPPPPAARQPLAGLKFAIKD 82
           V+   L    R NP +N  V   A  +R  L+               R  L G+  A KD
Sbjct: 31  VMRAYLAHIERVNPAVNAIV---ALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPKD 87

Query: 83  VFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHY 142
           +   KG  T  GSP +       +  A+VV  +   GA  IGKT   EF  G    N  Y
Sbjct: 88  LAPTKGIRTTLGSPIFA--DQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVY 145

Query: 143 GTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTV 202
           G   NP  PS   GGSS G+A A+A +++  A G+D +G +R PA+F  + G+RPS G V
Sbjct: 146 GATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRV 205

Query: 203 SMIGVLPNS--QSLDTVGLLARN 223
              G   +   Q L T G + R 
Sbjct: 206 PH-GPGGDVFVQQLGTEGPMGRT 227

Length = 484

>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional

 Score =  106 bits (267), Expect = 1e-24
 Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 20/162 (12%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGS----PD--WKRDHHEAERTAVVVTLLLKNGATCIGK 125
            L G+  +IKD+F  +G+ T  GS     D  W  D       A  V  L + GA  +GK
Sbjct: 71  LLDGVPVSIKDIFLTRGWPTLRGSRAIDADGPWDVD-------APAVARLREAGAVLLGK 123

Query: 126 TVLDEFAF-GITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR 184
           T   EF + G+T ++  YG   NP       GGSS G+A AVA  +   ++GTD  G VR
Sbjct: 124 TTTPEFGWKGVT-DSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVR 182

Query: 185 VPASFCGILGYRPSHGTVSMIGVLPNSQ--SLDTVGLLARNA 224
           +PASFCG  G++P+ G V +    P S   +L  VG + R  
Sbjct: 183 IPASFCGTFGFKPTFGRVPL---YPASPFGTLAHVGPMTRTV 221

Length = 466

>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional

 Score =  103 bits (258), Expect = 1e-23
 Identities = 63/156 (40%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 70  RQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLD 129
           R PL G+  AIKD  DV G VT +GS         A   A VV  L   GA  IGKT + 
Sbjct: 70  RLPLLGVPIAIKDDVDVAGEVTTYGSAGHGP---AATSDAEVVRRLRAAGAVIIGKTNVP 126

Query: 130 EFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASF 189
           E       E+  +G   NP  P+  PGGSS GSA AVAA L   ALG+D  G +R+P+++
Sbjct: 127 ELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTW 186

Query: 190 CGILGYRPSHGTVSMIGVLPNS---QSLDTVGLLAR 222
           CG+ G +P    +S+    P+    Q L   G +AR
Sbjct: 187 CGLFGLKPQRDRISL---EPHDGAWQGLSVNGPIAR 219

Length = 462

>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional

 Score =  103 bits (259), Expect = 2e-23
 Identities = 61/163 (37%), Positives = 77/163 (47%), Gaps = 21/163 (12%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVL 128
            R PL G+  A+KD  DV G  T FG+     +   A   + VV  L   GA  +GKT  
Sbjct: 78  DRLPLLGVPIAVKDDVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNT 134

Query: 129 DEF---------AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
            E          AFG T          NP    H PGGSS GSA AVAA LV  A+G+D 
Sbjct: 135 CELGQWPFTSGPAFGHTR---------NPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDG 185

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
            G VR+PA++  ++G +P  G +S   +      L   G LAR
Sbjct: 186 AGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLAR 228

Length = 483

>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional

 Score =  100 bits (250), Expect = 2e-22
 Identities = 57/173 (32%), Positives = 74/173 (42%), Gaps = 8/173 (4%)

Query: 29  VVLAETLRRRR-NPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVK 87
           VV A   R    NP LN           F+        P +     +G+   IKD  DV 
Sbjct: 34  VVEAAIARAEAVNPALNALA-----YAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVA 88

Query: 88  GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVN 147
           G  T  GS  W      A+  +      L  G   +GKT L EF F  + E+   G   N
Sbjct: 89  GLPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRN 146

Query: 148 PQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHG 200
           P    +  G SS GSA  VAA +V  A   D  G +R+PA+ CG++G +PS G
Sbjct: 147 PWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRG 199

Length = 468

>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional

 Score = 99.5 bits (248), Expect = 4e-22
 Identities = 58/161 (36%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 68  AARQPLAGLKFAIKDVFDV-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKT 126
             R PL G+   +KD  D      T  GS       +   R A +V  L   GA  +GK 
Sbjct: 68  KVRGPLHGIPVLLKDNIDAADPMPTTAGS--LALAGNRPTRDAFLVARLRDAGAVILGKA 125

Query: 127 VLDEFA-----FGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIG 181
            L E+A        +G +   G   NP      P GSSSGS  AVAA L   A+GT+T G
Sbjct: 126 NLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDG 185

Query: 182 CVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
            +  PA+  G++G +P+ G VS  G++P S S DT G + R
Sbjct: 186 SITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTR 226

Length = 497

>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional

 Score = 96.9 bits (241), Expect = 3e-21
 Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 61  FPQPPPPAARQPLAGLKFAIKD-VFDVKGYVTGFGS---PDWKRDHHEAERTAVVVTLLL 116
             Q      +  L G+   +KD V   K   T  G+    DW      A++ A +V  L 
Sbjct: 125 LDQERSRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWI-----ADQDATIVKQLK 179

Query: 117 KNGATCIGKTVLDEFAFGI-----TGENKHYGTPVNPQMPSHI-PGGSSSGSAVAVAAQL 170
           + GA  +GK  + E+A  +     +G +   G  +NP  P      GSSSGSA  VAA  
Sbjct: 180 EEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADF 239

Query: 171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN 223
              A+GT+T G +  PA+   ++G RPS G VS  G++P +++LDT G +AR 
Sbjct: 240 APLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMART 292

Length = 536

>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 61/166 (36%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PLAG+   +K   D  G+ T  G    K     A   + VV  L K GA  IG+T    F
Sbjct: 72  PLAGVPVTVKVNVDQAGFATTNGVRLQK--DLIAPADSPVVDNLRKAGAVIIGRTNTPAF 129

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
           ++    +N  +G  +NP  PS  PGGSS G+A AVAA +   A GTD  G +R PA  CG
Sbjct: 130 SYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACG 189

Query: 192 ILGYRPSHGTVSM---------IGVLPNSQSLDTVGLLARNASILH 228
           + G RP+ G V           IG     Q +   G LAR  + L 
Sbjct: 190 VHGLRPTLGRVPAYNASSPERPIGA----QLMSVQGPLARTVADLR 231

Length = 469

>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional

 Score = 86.8 bits (215), Expect = 4e-18
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 70  RQPLAGLKFAIKDVFDVKGYV-TGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVL 128
           R PL G+   +KD  +    + T  G+     + H +   A +VT L + GA  +GK  +
Sbjct: 77  RGPLHGIPVLLKDNIETNDSMHTSAGT--IALEQHISSEDAFLVTKLREAGAVILGKANM 134

Query: 129 DEFAFGIT-----GENKHYGTPVNPQ---MPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
            E A  ++     G +   G  +NP          GGSS+GSA+AVAA     ++GT+T 
Sbjct: 135 TELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVSVGTETD 194

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR---NASIL 227
           G +  PA    ++G +P+ G +S  G++P + S DT G  AR   +A+IL
Sbjct: 195 GSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAIL 244

Length = 491

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEED 545
           D +E LK  GNA FK   +++A+  Y +A++L+  +A  Y N A AYL+LG  +++A ED
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 546 CSKTISLDK 554
             K + LD 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 73.6 bits (181), Expect = 5e-16
 Identities = 25/66 (37%), Positives = 40/66 (60%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           E L   GN  +K   +++A+ YY +A++L+  +A  Y N AAAY +LG +++A ED  K 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 550 ISLDKK 555
           + LD  
Sbjct: 61  LELDPD 66

Length = 100

>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional

 Score = 79.7 bits (196), Expect = 1e-15
 Identities = 58/183 (31%), Positives = 83/183 (45%), Gaps = 13/183 (7%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGS---PDWKRDHHEAERTAVVVTLLLKNGATCIG 124
             +  L G+   +KD    K   T  G+    DW        + A +V  L  NGA  +G
Sbjct: 225 TNKSALYGMPVLLKDNIGTKELPTSAGTVALKDWV-----IGKDATIVENLKANGALILG 279

Query: 125 KTVLDEFAFGI-----TGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
           KT + E+A G+      G +   G   NP   +  P GSSSGSA A  +     A+GT+T
Sbjct: 280 KTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTET 339

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNA 239
            G +  PAS    +GY+PS G V+  G++P S   DT G L R  +  +   + L    +
Sbjct: 340 NGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTS 399

Query: 240 VEP 242
             P
Sbjct: 400 NPP 402

Length = 615

>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional

 Score = 74.2 bits (183), Expect = 4e-14
 Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 2/135 (1%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
               PL G+   IK+    +G     G+     D   A   A     L + GA  + KT 
Sbjct: 67  EPLGPLDGVPVTIKENIATRGVPVPLGTA--ATDLPPAAADAPPAARLREAGAVILAKTT 124

Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
           + ++    +G +  +G   NP      PGGSS+G+  A AA      LGTD  G VR+PA
Sbjct: 125 MPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSVRLPA 184

Query: 188 SFCGILGYRPSHGTV 202
            +CGI+G +PS G +
Sbjct: 185 GWCGIVGLKPSLGRI 199

Length = 464

>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 55/156 (35%), Positives = 76/156 (48%), Gaps = 9/156 (5%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
           PL G+ +  KD + VKG     GSP +K     A+R A  +  L   GA C+GKT +   
Sbjct: 75  PLDGIPYTAKDSYLVKGLTAASGSPAFK--DLVAQRDAFTIERLRAAGAICLGKTNMPPM 132

Query: 132 AFGITGENK-HYG---TPVNPQ-MPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP 186
           A G  G  +  YG   +P N   + +    GSS+G+  A AA    F L  +T    R P
Sbjct: 133 ANG--GMQRGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRGP 190

Query: 187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR 222
           AS  G+  Y PS G +S+ G  P + ++D V   AR
Sbjct: 191 ASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYAR 226

Length = 566

>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 30/175 (17%)

Query: 40  NPKLNGRVDFGAFLERFELIPFPQPPPPAARQ----------PLAGLKFAIKDVF-DVKG 88
           NP LN  V      ER+E           A +          P AG+   +KD+  ++KG
Sbjct: 35  NPTLNAIVS-----ERYE----------EALEEAKQRDFSGKPFAGVPIFLKDLGQELKG 79

Query: 89  YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVN- 147
            ++  GS  +K  +++A +T + V  L   G   +G++   EF F    ++  +G PVN 
Sbjct: 80  QLSTSGSRLFK--NYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHG-PVNL 136

Query: 148 PQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTV 202
           P   S   GGSS G+A  V++ +V  A  +D  G +R+PASF G++G +PS G +
Sbjct: 137 PFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRI 191

Length = 482

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D ++       A +K  ++ +A+  Y +A++L+  +A  Y N   AY +LG +++A E  
Sbjct: 32  DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Query: 547 SKTISLDKK 555
            K + LD  
Sbjct: 92  EKALELDPN 100

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 59.2 bits (143), Expect = 3e-09
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LKEKGN A++ K +NKA+  YS+AI+       YYSNRAA +  LG +++  ED +  + 
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWEKVVEDTTAALE 188

Query: 552 LD 553
           LD
Sbjct: 189 LD 190

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           A +L  +K   AF    +  AV+ Y++AI L+  +A  Y++RA A ++LG F +A  D +
Sbjct: 2   AKDLE-DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADAN 60

Query: 548 KTISLD 553
           K I LD
Sbjct: 61  KAIELD 66

Length = 356

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           A    N   AYL+LG + +A E   K + L+  
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           A    N   AYL+LG + +A E   K + LD  
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
           +E L   GNA  K   +++A+ YY +A++L+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
            Y +A++L+  +A  Y N A   L LG + +A +
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 11/31 (35%), Positives = 21/31 (67%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
           ++ L   GNA  K  ++++A+ YY +A++LN
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELN 31

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	575
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	100.0
PLN02722	422	indole-3-acetamide amidohydrolase	100.0
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	100.0
PRK09201	465	amidase; Provisional	100.0
PRK06102	452	hypothetical protein; Provisional	100.0
PRK06169	466	putative amidase; Provisional	100.0
PRK07056	454	amidase; Provisional	100.0
PRK07487	469	amidase; Provisional	100.0
PRK05962	424	amidase; Validated	100.0
PRK07486	484	amidase; Provisional	100.0
PRK07042	464	amidase; Provisional	100.0
PRK06170	490	amidase; Provisional	100.0
PRK12470	462	amidase; Provisional	100.0
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	100.0
PRK08310	395	amidase; Provisional	100.0
PRK07488	472	indole acetimide hydrolase; Validated	100.0
PRK07235	502	amidase; Provisional	100.0
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	100.0
PRK06061	483	amidase; Provisional	100.0
PRK06529	482	amidase; Provisional	100.0
PRK07869	468	amidase; Provisional	100.0
PRK08186	600	allophanate hydrolase; Provisional	100.0
PRK08137	497	amidase; Provisional	100.0
PRK07139	439	amidase; Provisional	100.0
TIGR02713	561	allophanate_hyd allophanate hydrolase. Allophanate	100.0
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	100.0
PRK06828	491	amidase; Provisional	100.0
PRK11910	615	amidase; Provisional	100.0
PRK06707	536	amidase; Provisional	100.0
PRK06565	566	amidase; Validated	100.0
KOG1211	506	consensus Amidases [Translation, ribosomal structu	100.0
KOG1212	560	consensus Amidases [Translation, ribosomal structu	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.5
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.3
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.23
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.2
KOG4234	271	consensus TPR repeat-containing protein [General f	99.03
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.01
PRK15359	144	type III secretion system chaperone protein SscB;	99.01
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.97
PRK15359	144	type III secretion system chaperone protein SscB;	98.95
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.93
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.91
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.88
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.85
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.82
PRK11189	296	lipoprotein NlpI; Provisional	98.82
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.8
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.77
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.76
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.74
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.73
PF13371	73	TPR_9: Tetratricopeptide repeat	98.72
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.71
KOG0553	304	consensus TPR repeat-containing protein [General f	98.67
PRK11189	296	lipoprotein NlpI; Provisional	98.66
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.61
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.6
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.57
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.55
KOG4555	175	consensus TPR repeat-containing protein [Function	98.47
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.45
PRK12370	553	invasion protein regulator; Provisional	98.45
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.44
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.44
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.44
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.41
KOG1125	579	consensus TPR repeat-containing protein [General f	98.41
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.39
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.38
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.37
KOG1126	638	consensus DNA-binding cell division cycle control	98.35
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.34
KOG4234	271	consensus TPR repeat-containing protein [General f	98.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.32
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.31
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.26
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.23
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.2
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.19
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.19
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.18
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.18
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.16
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.15
KOG1126	638	consensus DNA-binding cell division cycle control	98.14
PRK12370	553	invasion protein regulator; Provisional	98.14
PRK15331	165	chaperone protein SicA; Provisional	98.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.12
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.11
PLN02789	320	farnesyltranstransferase	98.1
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.09
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.08
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.04
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.04
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.04
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.02
PRK10803	263	tol-pal system protein YbgF; Provisional	98.01
PF13431	34	TPR_17: Tetratricopeptide repeat	97.99
PLN02789	320	farnesyltranstransferase	97.96
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.94
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.91
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.89
PF13512	142	TPR_18: Tetratricopeptide repeat	97.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.87
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.79
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.78
KOG1125	579	consensus TPR repeat-containing protein [General f	97.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.77
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.76
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.76
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.7
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.69
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.69
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.68
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.66
PF13428	44	TPR_14: Tetratricopeptide repeat	97.66
PRK10803	263	tol-pal system protein YbgF; Provisional	97.64
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.63
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.62
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.6
PRK15331	165	chaperone protein SicA; Provisional	97.59
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.59
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.52
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.51
PF13512	142	TPR_18: Tetratricopeptide repeat	97.49
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.48
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.46
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.46
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.43
KOG2076	895	consensus RNA polymerase III transcription factor	97.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.36
KOG1310	758	consensus WD40 repeat protein [General function pr	97.34
PF13428	44	TPR_14: Tetratricopeptide repeat	97.34
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.32
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.26
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.25
PRK14574	822	hmsH outer membrane protein; Provisional	97.24
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.22
KOG2076	895	consensus RNA polymerase III transcription factor	97.19
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.14
PRK11906	458	transcriptional regulator; Provisional	97.13
KOG2003	840	consensus TPR repeat-containing protein [General f	97.09
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.06
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.06
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.05
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.0
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.99
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.96
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.96
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.96
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.93
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.91
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.9
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.89
KOG4555	175	consensus TPR repeat-containing protein [Function	96.88
PRK10941	269	hypothetical protein; Provisional	96.88
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.88
PF12688	120	TPR_5: Tetratrico peptide repeat	96.87
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.87
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.87
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.85
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.82
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.81
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.79
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.75
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.72
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.7
PRK14574	822	hmsH outer membrane protein; Provisional	96.66
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.65
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.64
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.62
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.61
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.58
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.57
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.56
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.55
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	96.54
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.5
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.49
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.49
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.39
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.37
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.33
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.28
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.28
PF13371	73	TPR_9: Tetratricopeptide repeat	96.25
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.23
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.17
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.16
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.12
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.08
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.06
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.05
KOG1129	478	consensus TPR repeat-containing protein [General f	96.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.98
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.97
PRK11906	458	transcriptional regulator; Provisional	95.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.89
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.88
KOG2003	840	consensus TPR repeat-containing protein [General f	95.72
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.66
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.63
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.62
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.48
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.46
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.41
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.37
KOG1129	478	consensus TPR repeat-containing protein [General f	95.28
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.12
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.07
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.97
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	94.77
COG2912	269	Uncharacterized conserved protein [Function unknow	94.52
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.32
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.26
PF13431	34	TPR_17: Tetratricopeptide repeat	94.26
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.2
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.09
KOG0495	913	consensus HAT repeat protein [RNA processing and m	93.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.89
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.87
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.66
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.62
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	93.55
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.31
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.16
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.98
KOG2376	652	consensus Signal recognition particle, subunit Srp	92.98
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.97
KOG2376	652	consensus Signal recognition particle, subunit Srp	92.86
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.8
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.76
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.75
KOG3364	149	consensus Membrane protein involved in organellar	92.65
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.15
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	91.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	91.23
KOG0495	913	consensus HAT repeat protein [RNA processing and m	91.07
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.0
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.94
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.9
KOG2796	366	consensus Uncharacterized conserved protein [Funct	90.87
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.12
COG0457	291	NrfG FOG: TPR repeat [General function prediction	90.07
KOG1310	758	consensus WD40 repeat protein [General function pr	89.81
COG0457	291	NrfG FOG: TPR repeat [General function prediction	88.81
COG4700	251	Uncharacterized protein conserved in bacteria cont	88.79
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.65
KOG1586	288	consensus Protein required for fusion of vesicles	88.25
KOG2610	491	consensus Uncharacterized conserved protein [Funct	87.99
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.77
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.62
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	87.58
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	87.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	87.11
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.91
COG3118	304	Thioredoxin domain-containing protein [Posttransla	86.8
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	86.8
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	86.61
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	86.52
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.3
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.26
PLN03218	1060	maturation of RBCL 1; Provisional	84.28
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.08
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	83.81
KOG2471	696	consensus TPR repeat-containing protein [General f	83.77
PRK04841	903	transcriptional regulator MalT; Provisional	83.0
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.79
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.51
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	82.38
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	82.15
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	81.76
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.6
PF04212	69	MIT: MIT (microtubule interacting and transport) d	81.38
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.31
PLN03218	1060	maturation of RBCL 1; Provisional	80.64
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	80.53
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	80.27
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	80.26
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	80.11
PRK04841	903	transcriptional regulator MalT; Provisional	80.1

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-91  Score=734.16  Aligned_cols=423  Identities=26%  Similarity=0.336  Sum_probs=339.8

Q ss_pred             HHHHhhc-----hhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCC--CCC-------CCCCCCCCCCceEEeeccccc
Q 008170           21 IGVSVVG-----FVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFP--QPP-------PPAARQPLAGLKFAIKDVFDV   86 (575)
Q Consensus        21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~a~-------~~~~~gpL~Gvpi~vKD~~~~   86 (575)
                      ++.+|++     .+|++|+++.+++||++.|+.+|||+....+.++.  +|+       .+...|||+||||+|||||+|
T Consensus         8 ~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn~~~   87 (475)
T COG0154           8 TAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDNIDT   87 (475)
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeecccc
Confidence            4555554     39999999999999999999999999999886543  332       234568999999999999999


Q ss_pred             CCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008170           87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV  166 (575)
Q Consensus        87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV  166 (575)
                      +|++||+||+.+.+  +++.+||++|+||+++||||+||||||||+|+.+|+|++||+|+||||++|+||||||||||||
T Consensus        88 ~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSAaAV  165 (475)
T COG0154          88 AGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAV  165 (475)
T ss_pred             CCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHHH
Confidence            99999999999975  5779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----
Q 008170          167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----  242 (575)
Q Consensus       167 Aag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----  242 (575)
                      |+|++++|||||||||||+|||||||||||||+||||+.|++|+++++|++|||+|||+|++.+++++.+.+..+.    
T Consensus       166 Aag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~~~~  245 (475)
T COG0154         166 AAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPP  245 (475)
T ss_pred             HhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988654330    


Q ss_pred             ------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCC
Q 008170          243 ------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPEN  310 (575)
Q Consensus       243 ------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~  310 (575)
                                  ....|+.++.+.... ...++++.+.+.++++.|+..+.       +.++..+|.+.....       
T Consensus       246 ~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga-------~v~~v~lp~~~~~~~-------  310 (475)
T COG0154         246 PPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGA-------EVVEVSLPLLSDDYA-------  310 (475)
T ss_pred             ccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCC-------EEEeccCCchhhhhh-------
Confidence                        112356666654321 12345889999999999874332       111233443221000       


Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHH--HHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHH---HHHHHHHHhCCC
Q 008170          311 GTATLKALSSVMLSLQRYEFKTIYEE--WVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNE---MRAALQRLLKDD  385 (575)
Q Consensus       311 ~~~~~~~~~~~~~~l~~~e~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~---~~~~~~~~~~~~  385 (575)
                          ...+.   ......+.+..+..  +.......+++++++++..+..++..+|..+...|..   +++.+.++|+++
T Consensus       311 ----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~  383 (475)
T COG0154         311 ----LAAYY---LARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEV  383 (475)
T ss_pred             ----hhHHH---HHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                00000   00000011111111  4444556789999999999999999999988888844   499999999999


Q ss_pred             CEEEecCCCCCCCcCCc-cc-ccchhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHH
Q 008170          386 KILVIPTVSDPPLKLNT-KK-TYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDL  462 (575)
Q Consensus       386 DvLl~Pt~~~~ap~~~~-~~-~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~  462 (575)
                      |+||+||+|.+||++++ .. .........+..+|.++|++|+|+||||+|+. +|||+||||+|++|+|..||+++.++
T Consensus       384 D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~  463 (475)
T COG0154         384 DVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAAL  463 (475)
T ss_pred             CEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHH
Confidence            99999999999999997 21 11122222233689999999999999999998 69999999999999999999999999


Q ss_pred             HHHhh
Q 008170          463 YDSLQ  467 (575)
Q Consensus       463 ~~~~~  467 (575)
                      |+...
T Consensus       464 E~~~~  468 (475)
T COG0154         464 EQALG  468 (475)
T ss_pred             HHhhC
Confidence            98654

>PLN02722 indole-3-acetamide amidohydrolase

Probab=100.00  E-value=2.8e-90  Score=719.60  Aligned_cols=417  Identities=51%  Similarity=0.869  Sum_probs=337.3

Q ss_pred             CCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEe
Q 008170           45 GRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIG  124 (575)
Q Consensus        45 ~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~G  124 (575)
                      .|+.+|||++.+..+.    ......||||||||+|||||+++|++||+||+.|.+.+.++.+||++|+||++||||++|
T Consensus         3 ~~~~~~a~~~~~~~~~----~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilG   78 (422)
T PLN02722          3 TNPDYGAFMEKFVLSP----TSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVG   78 (422)
T ss_pred             cCCCCCcceeeccccC----CCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEE
Confidence            5778999999864321    112456899999999999999999999999998874334567999999999999999999


Q ss_pred             ecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccC
Q 008170          125 KTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM  204 (575)
Q Consensus       125 Ktn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~  204 (575)
                      ||||+||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|||||||||||+|||||||||||||+||||+
T Consensus        79 KTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~  158 (422)
T PLN02722         79 KTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVST  158 (422)
T ss_pred             EechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCcccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCC-Cc
Q 008170          205 IGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN-PE  283 (575)
Q Consensus       205 ~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~  283 (575)
                      .|++|+++++|++|||+|+++|++.+++++.+.+..+...+.++.+..+.+.......+++.+.++++++.+.+.+. ++
T Consensus       159 ~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~  238 (422)
T PLN02722        159 VGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVK  238 (422)
T ss_pred             CCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCeee
Confidence            99999999999999999999999999999987765555556677776554321122235677788888888775442 23


Q ss_pred             cccccchhhccCcchHHhhhcc-CCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHH
Q 008170          284 HMNVGQYIASNVPSLKGLRAQS-TSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD  362 (575)
Q Consensus       284 ~~~~~~~v~~~~p~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~  362 (575)
                      ..++...++...+.+..+...+ ...+........+...+..++.+|+...+..+++...+.+++.++.+++.+..++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~~  318 (422)
T PLN02722        239 HVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTEE  318 (422)
T ss_pred             ecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCHH
Confidence            3333333333333333221111 011111222333334445566667777888888777788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcc
Q 008170          363 NIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPIS  442 (575)
Q Consensus       363 ~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvG  442 (575)
                      +|.++++.|.++++.++++|+++|+||+||+|.+||+++........+...++.+|.++|++|+|+||||+|..+|||+|
T Consensus       319 ~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvG  398 (422)
T PLN02722        319 KIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVS  398 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCEE
Confidence            99999999999999999999999999999999999988743222223333556689999999999999999998999999


Q ss_pred             cccccccCCchhHHhHHHHHHHH
Q 008170          443 ISFITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       443 lqivg~~~~d~~ll~~a~~~~~~  465 (575)
                      |||+|++++|..||++++.+...
T Consensus       399 lqivg~~~~D~~lL~~a~~l~~~  421 (422)
T PLN02722        399 VSLLAKHGSDGFLLNLVESLYGT  421 (422)
T ss_pred             EEEECCCCChHHHHHHHHHHHhh
Confidence            99999999999999999988653

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=100.00  E-value=3.9e-90  Score=729.76  Aligned_cols=407  Identities=26%  Similarity=0.363  Sum_probs=336.4

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~   99 (575)
                      +.+|++|+++.+++||++.|+.+|||++.++++++++|+       .+...||||||||+|||||+++|++||+||+.+.
T Consensus        12 g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~   91 (452)
T TIGR02715        12 GRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINR   91 (452)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeCcCChhhc
Confidence            449999999999999999999999999998887766553       3456799999999999999999999999999987


Q ss_pred             ccCCCC-CCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccC
Q 008170          100 RDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD  178 (575)
Q Consensus       100 ~~~~~~-~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtD  178 (575)
                      +  .++ .+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|||||
T Consensus        92 ~--~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag~~~~alGtD  169 (452)
T TIGR02715        92 D--LAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSD  169 (452)
T ss_pred             c--CCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCCCCceEEeeC
Confidence            4  455 6999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 008170          179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------  242 (575)
Q Consensus       179 tgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------  242 (575)
                      ||||||||||||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.                
T Consensus       170 tgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p~~~~~~~~~~  249 (452)
T TIGR02715       170 TNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEPTVPLLPA  249 (452)
T ss_pred             CCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999886532221                


Q ss_pred             -ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHH
Q 008170          243 -RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV  321 (575)
Q Consensus       243 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~  321 (575)
                       .++.|+.+..+.+.  ...++++.++++++++.|.....         +  ..|.....                 ...
T Consensus       250 ~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~~~---------v--~~~~~~~~-----------------~~~  299 (452)
T TIGR02715       250 GISGLRIAVLGGWFQ--QNADPEALAAVGRVAKALGATTI---------V--ELPDAERA-----------------RAA  299 (452)
T ss_pred             CCCCCEEEEECcccc--CCCCHHHHHHHHHHHHhcCCeee---------e--cCCchHHH-----------------HHH
Confidence             12235555544331  22467889999999888732110         1  11221110                 001


Q ss_pred             HHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCC
Q 008170          322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN  401 (575)
Q Consensus       322 ~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~  401 (575)
                      +..+...|....+..+++...+.+++.++.++..+..++..+|.++++.|+++++.++++|+++|+||+||+|.+||+++
T Consensus       300 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~  379 (452)
T TIGR02715       300 AFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIG  379 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhhchhhcCHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCc
Confidence            11122234444455555555667899999999888889999999999999999999999999999999999999999987


Q ss_pred             cccc--c--chhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHH
Q 008170          402 TKKT--Y--SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       402 ~~~~--~--~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~  465 (575)
                      ....  .  ...+...+..||.+||++|+|++|||+|..+|||+||||+|++++|..||+++.++|+.
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~  447 (452)
T TIGR02715       380 QETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ  447 (452)
T ss_pred             ccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            5210  1  11111233458999999999999999999899999999999999999999999999874

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK09201 amidase; Provisional

Probab=100.00  E-value=6.6e-90  Score=729.79  Aligned_cols=407  Identities=26%  Similarity=0.357  Sum_probs=336.7

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~   99 (575)
                      +.+|++|+++.+++||++.|+.+|||++.++++++++|+       .+..+||||||||+|||+|+++|++||+||+.+.
T Consensus        19 g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~   98 (465)
T PRK09201         19 GELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFDVAGLTTLAGSKINR   98 (465)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccccCCcccCcCChhhc
Confidence            449999999999999999999999999998877666553       3456799999999999999999999999999987


Q ss_pred             ccCCCC-CCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccC
Q 008170          100 RDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD  178 (575)
Q Consensus       100 ~~~~~~-~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtD  178 (575)
                      +  .++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|||||
T Consensus        99 ~--~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAaG~~~~alGtD  176 (465)
T PRK09201         99 D--RPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSD  176 (465)
T ss_pred             c--CCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEecC
Confidence            5  455 6899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 008170          179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------  242 (575)
Q Consensus       179 tgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------  242 (575)
                      ||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..++                
T Consensus       177 tgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~~~~~~~~~~~~  256 (465)
T PRK09201        177 TNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADRPAEPTAPLLDR  256 (465)
T ss_pred             CCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhcc
Confidence            9999999999999999999999999999999999999999999999999999999886542221                


Q ss_pred             -ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHH
Q 008170          243 -RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV  321 (575)
Q Consensus       243 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~  321 (575)
                       .++.++.+..+.+  ....++++.++++++++.|.....   +        ..|.....                 ...
T Consensus       257 ~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~~~---v--------~~~~~~~~-----------------~~~  306 (465)
T PRK09201        257 GAEGLRIAVLGGYF--AQWADPEARAAVDRVAKALGATRE---V--------ELPEAARA-----------------RAA  306 (465)
T ss_pred             CCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHccCcee---e--------cCCchhHH-----------------HHH
Confidence             1223555554433  122467889999999888732110   1        11221100                 001


Q ss_pred             HHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCC
Q 008170          322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN  401 (575)
Q Consensus       322 ~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~  401 (575)
                      +..+...|....+..+++...+.+++.++.++..+..++..+|.++++.|+.+++.++++|+++|+||+||+|.+||+++
T Consensus       307 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~ap~~~  386 (465)
T PRK09201        307 AFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSAPLIG  386 (465)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCccc
Confidence            11222334444455555555667899999999999889999999999999999999999999999999999999999997


Q ss_pred             cccc---cc-hhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHH
Q 008170          402 TKKT---YS-AEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       402 ~~~~---~~-~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~  465 (575)
                      +...   .. ..+...+..||.+||++|+|++|||+|..+|||+||||+|++++|..||+++..+|+.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~~  454 (465)
T PRK09201        387 QETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQQ  454 (465)
T ss_pred             ccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHhh
Confidence            5321   11 1111233458999999999999999998899999999999999999999999999873

>PRK06102 hypothetical protein; Provisional

Probab=100.00  E-value=6.2e-89  Score=719.80  Aligned_cols=414  Identities=30%  Similarity=0.398  Sum_probs=335.1

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~   99 (575)
                      +.+|++|+++.+++||+++|+ +|||++.++++++++|+       .+..+||||||||+|||+|+|+|++||+||+.+.
T Consensus        18 g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~   96 (452)
T PRK06102         18 GALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLA   96 (452)
T ss_pred             CCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCCccCcCChhhc
Confidence            449999999999999999986 89999998877665553       3456799999999999999999999999999887


Q ss_pred             ccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCC--CCCCCCCChHHHHHHHhcCCceeecc
Q 008170          100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMP--SHIPGGSSSGSAVAVAAQLVDFALGT  177 (575)
Q Consensus       100 ~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~--~~~~GGSSgGsaaaVAag~~~~aiGt  177 (575)
                      + +.++.+||++|+||++|||||+||||||||+++.+|.|++||+|+||||+  +|+|||||||||||||+|++++++||
T Consensus        97 ~-~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAaaVAaG~~~~alGt  175 (452)
T PRK06102         97 N-AAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGT  175 (452)
T ss_pred             c-CCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHHHHHcCCCceEEec
Confidence            4 23347999999999999999999999999999999999999999999996  79999999999999999999999999


Q ss_pred             CCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceEEeccc
Q 008170          178 DTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLIFADD  253 (575)
Q Consensus       178 DtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~~~~~  253 (575)
                      ||||||||||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.    ....++.+..+
T Consensus       176 DtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~~~ri~~~~~  255 (452)
T PRK06102        176 DTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAGLRLVVPET  255 (452)
T ss_pred             CCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccccCCCCCEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999998876533221    12235555444


Q ss_pred             hhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhh
Q 008170          254 IFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKT  332 (575)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~  332 (575)
                      .+  ....++++.+.++++++.|...+.        .| +..+|.+.+...              +...+..+...|...
T Consensus       256 ~~--~~~~~~~v~~~~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~--------------~~~~~~~~~~~e~~~  311 (452)
T PRK06102        256 VV--FDDAEPGVRAAFEAAVERLQAAGA--------LVERQAFPAFQEILD--------------LIARHGWLVTAEAFA  311 (452)
T ss_pred             hh--cccCCHHHHHHHHHHHHHHHhCCC--------EEEecCCccHHHHHH--------------HHHHHHHHHHHHHHH
Confidence            32  123467899999999999864332        11 112233221110              000111122234444


Q ss_pred             hHHHHHHH-cCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhh-
Q 008170          333 IYEEWVKS-AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF-  410 (575)
Q Consensus       333 ~~~~~~~~-~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~-  410 (575)
                      .+..++.. ....+++.++.++..+..++..+|.++++.|.++++.+.++|+ +|+||+||+|++||++++.......+ 
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~  390 (452)
T PRK06102        312 LHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFF  390 (452)
T ss_pred             HHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhh
Confidence            44444433 3456889999999888889999999999999999999999999 89999999999999987522111111 


Q ss_pred             --HhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          411 --HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       411 --~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                        ...++.||.+||++|+|++|||+|+. +|||+||||+|++++|..||+++.++|+.+.
T Consensus       391 ~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l~  450 (452)
T PRK06102        391 ATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVIR  450 (452)
T ss_pred             hhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence              12334589999999999999999987 8999999999999999999999999998653

>PRK06169 putative amidase; Provisional

Probab=100.00  E-value=6.3e-89  Score=723.25  Aligned_cols=416  Identities=19%  Similarity=0.229  Sum_probs=335.7

Q ss_pred             HHHHhh-----chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCC
Q 008170           21 IGVSVV-----GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG   88 (575)
Q Consensus        21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G   88 (575)
                      ++.+|+     +.+|++|+++.+++||++.|+.+|||++.++++++++|+       .+..+||||||||+|||||+++|
T Consensus         8 ~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G   87 (466)
T PRK06169          8 TAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDIFLTRG   87 (466)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecccccCC
Confidence            555555     349999999999999999999999999998776665543       24557999999999999999999


Q ss_pred             ccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHh
Q 008170           89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA  168 (575)
Q Consensus        89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa  168 (575)
                      ++||+||+.+.+ +.++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus        88 ~~tt~Gs~~~~~-~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa  166 (466)
T PRK06169         88 WPTLRGSRAIDA-DGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVAL  166 (466)
T ss_pred             cccCccChhhcc-CCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHc
Confidence            999999999874 3455799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc------
Q 008170          169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------  242 (575)
Q Consensus       169 g~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------  242 (575)
                      |++++|||||||||||+|||||||||||||+||||+.|+.|.+ ++|++|||+|+++|+..+++++.+.+..++      
T Consensus       167 G~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~~~~~~~  245 (466)
T PRK06169        167 GMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDWSALPPP  245 (466)
T ss_pred             CCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCCcccCCC
Confidence            9999999999999999999999999999999999999998886 899999999999999999999876432211      


Q ss_pred             -----------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCc
Q 008170          243 -----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENG  311 (575)
Q Consensus       243 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~  311 (575)
                                 .++.++.+..+..  ....++++.++++++++.|+..+.        .+++..+.+...          
T Consensus       246 ~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~----------  305 (466)
T PRK06169        246 TTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALGA--------RVEEVDPGFSDP----------  305 (466)
T ss_pred             CcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcCC--------EEEEeCCCcchH----------
Confidence                       1223555544322  122467899999999999874332        111111111110          


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q 008170          312 TATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP  391 (575)
Q Consensus       312 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~P  391 (575)
                         .    ..+..+...+....+..+.......+++.++.+++.+..++..+|.++++.|+++++.|.++|+++|+||+|
T Consensus       306 ---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~P  378 (466)
T PRK06169        306 ---V----EAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTP  378 (466)
T ss_pred             ---H----HHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeC
Confidence               0    000111111222223333333445688999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCcccccc--hhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHH
Q 008170          392 TVSDPPLKLNTKKTYS--AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       392 t~~~~ap~~~~~~~~~--~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~  465 (575)
                      |+|++||+++......  ......+..||.++|++|+|++|||+|.. +|||+||||+|++++|..||++++.+|+.
T Consensus       379 t~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~  455 (466)
T PRK06169        379 TLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQA  455 (466)
T ss_pred             CCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhh
Confidence            9999999987532111  11112334589999999999999999987 89999999999999999999999999875

>PRK07056 amidase; Provisional

Probab=100.00  E-value=8.6e-89  Score=719.11  Aligned_cols=415  Identities=28%  Similarity=0.353  Sum_probs=340.4

Q ss_pred             chhHHHHHHHHhhcccccCCCC-cCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhh
Q 008170           27 GFVVLAETLRRRRNPKLNGRVD-FGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDW   98 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~   98 (575)
                      +.+|++|+++.+++||+++|+. +|||++.++++++++|+       .+...||||||||+|||+|+++|++||+||+.+
T Consensus        18 g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~   97 (454)
T PRK07056         18 GRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVAGQVTRAGSRVL   97 (454)
T ss_pred             CCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccCCCccCCCChhh
Confidence            4499999999999999999975 99999998777665553       345679999999999999999999999999998


Q ss_pred             hccCCCC-CCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCC----CCCCCCCCCChHHHHHHHhcCCce
Q 008170           99 KRDHHEA-ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQ----MPSHIPGGSSSGSAVAVAAQLVDF  173 (575)
Q Consensus        99 ~~~~~~~-~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~----~~~~~~GGSSgGsaaaVAag~~~~  173 (575)
                      .+  .++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+|||    |++|+|||||||||||||+|++++
T Consensus        98 ~~--~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGsAaaVAag~~~~  175 (454)
T PRK07056         98 AD--APPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAA  175 (454)
T ss_pred             cc--CCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHHHHHHHcCCCce
Confidence            74  455 68999999999999999999999999999999999999999999    899999999999999999999999


Q ss_pred             eeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceEE
Q 008170          174 ALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLI  249 (575)
Q Consensus       174 aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~  249 (575)
                      |+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.++.++    .++.|+.
T Consensus       176 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~lrig  255 (454)
T PRK07056        176 ALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVPAARPLEGLRLA  255 (454)
T ss_pred             EEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCcccccccCcEEE
Confidence            999999999999999999999999999999999999999999999999999999999999887654332    1234666


Q ss_pred             eccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhh
Q 008170          250 FADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE  329 (575)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e  329 (575)
                      +..+.+  ....++++.+.++++++.|+..+.       +.++..+|.+.....              +.. ...+...|
T Consensus       256 ~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~-------~v~~~~~~~~~~~~~--------------~~~-~~~~~~~e  311 (454)
T PRK07056        256 VPTTVV--LDGLDATVAAAFERALKRLSAAGA-------IIEEIAFPELAELAE--------------INA-KGGFSAAE  311 (454)
T ss_pred             Ecchhh--ccCCCHHHHHHHHHHHHHHHHCCC-------EEEEecCcchHHHHH--------------HHH-hhhHHHHH
Confidence            655442  122467899999999999874332       001112233221110              000 01112223


Q ss_pred             hhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchh
Q 008170          330 FKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAE  409 (575)
Q Consensus       330 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~  409 (575)
                      ....+..+.......+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||++++.......
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~  391 (454)
T PRK07056        312 SYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEADDAA  391 (454)
T ss_pred             HHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCcccccccchh
Confidence            34444555555566789999999998888999999999999999999999999999999999999999998753211122


Q ss_pred             hHh---hhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          410 FHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       410 ~~~---~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      +..   .++.||.+||++|+|++|||+|..+|||+||||+|++++|..||++++++|+.+.
T Consensus       392 ~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l~  452 (454)
T PRK07056        392 FFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVLR  452 (454)
T ss_pred             hHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            211   2335799999999999999999889999999999999999999999999998663

>PRK07487 amidase; Provisional

Probab=100.00  E-value=1e-88  Score=721.43  Aligned_cols=422  Identities=20%  Similarity=0.218  Sum_probs=336.3

Q ss_pred             hHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeeccc
Q 008170           17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF   84 (575)
Q Consensus        17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~   84 (575)
                      ++..|+.+|+..     +|++|+++.+++||++.|+.+|||++.++++++++|+       .+..+||||||||+|||+|
T Consensus         5 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~   84 (469)
T PRK07487          5 LWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVNV   84 (469)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEeccc
Confidence            444467776644     8999999999999999999999999998877666553       2456799999999999999


Q ss_pred             ccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008170           85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV  164 (575)
Q Consensus        85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa  164 (575)
                      +|+|++||+||+.+.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus        85 ~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsAa  162 (469)
T PRK07487         85 DQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAA  162 (469)
T ss_pred             ccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence            9999999999998874  67889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCC----C-CCCCccccccccCHHHHHHHHHHHccCCC
Q 008170          165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLP----N-SQSLDTVGLLARNASILHRVGHVLLQLNA  239 (575)
Q Consensus       165 aVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p----~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~  239 (575)
                      |||+|++++|||||||||||||||||||||||||+||||+.|+++    + +.++|++|||+||++|++.+++++.+.+.
T Consensus       163 AVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d~  242 (469)
T PRK07487        163 AVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPDP  242 (469)
T ss_pred             HHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999873    3 34789999999999999999999886543


Q ss_pred             CCc----------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhc--cCcchHHhhhccCC
Q 008170          240 VEP----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS--NVPSLKGLRAQSTS  307 (575)
Q Consensus       240 ~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~--~~p~l~~~~~~~~~  307 (575)
                      .++          ..+.|+.+..+.+.  ...++++.++++++++.|+..+.        .+++  ..|.+...      
T Consensus       243 ~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~------  306 (469)
T PRK07487        243 RDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGW--------TVEEVDDTPPLREA------  306 (469)
T ss_pred             CCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCC--------EEEecCCCCchHHH------
Confidence            221          12346666554321  22467899999999998864332        1111  22322211      


Q ss_pred             CCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHc-CCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 008170          308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVKSA-KPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDK  386 (575)
Q Consensus       308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D  386 (575)
                                 ...+..+...+....+..+.... .+.+.+.+...+..+..++..+|.++++.|+.+++.+.++|+++|
T Consensus       307 -----------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  375 (469)
T PRK07487        307 -----------AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYP  375 (469)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                       11111122223333344443322 234556666666777788999999999999999999999999999


Q ss_pred             EEEecCCCCCCCcCCcccccchhhHh--hhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHH
Q 008170          387 ILVIPTVSDPPLKLNTKKTYSAEFHD--RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYD  464 (575)
Q Consensus       387 vLl~Pt~~~~ap~~~~~~~~~~~~~~--~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~  464 (575)
                      +||+||+|++||+++........+..  ....+|.++|++|+|++|||+|+.+|||+||||+|++++|..||++++.+|+
T Consensus       376 ~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~  455 (469)
T PRK07487        376 LLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEA  455 (469)
T ss_pred             EEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHH
Confidence            99999999999998743221122211  1112577899999999999999999999999999999999999999999988


Q ss_pred             Hhh
Q 008170          465 SLQ  467 (575)
Q Consensus       465 ~~~  467 (575)
                      .+.
T Consensus       456 ~~~  458 (469)
T PRK07487        456 RGG  458 (469)
T ss_pred             hhC
Confidence            543

>PRK05962 amidase; Validated

Probab=100.00  E-value=6.2e-88  Score=706.52  Aligned_cols=405  Identities=24%  Similarity=0.342  Sum_probs=330.6

Q ss_pred             HHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCC-CC
Q 008170           36 RRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA-ER  107 (575)
Q Consensus        36 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~-~~  107 (575)
                      +.+++||+++|+.+|||++.++++++++|+       .+..+||||||||+|||||+|+|++||+||+.+.+  .++ .+
T Consensus         2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~~~   79 (424)
T PRK05962          2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRD--APPAGA   79 (424)
T ss_pred             HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhc--CCCCcC
Confidence            578999999999999999998877665553       24567999999999999999999999999999874  455 68


Q ss_pred             chHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCcccccc
Q 008170          108 TAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA  187 (575)
Q Consensus       108 da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPA  187 (575)
                      ||++|+||+++||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|+|||||||||+||
T Consensus        80 dA~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPA  159 (424)
T PRK05962         80 DALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPA  159 (424)
T ss_pred             ChHHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----ccCceEEeccchhhhcCCCch
Q 008170          188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----RRARRLIFADDIFQLSKVPKL  263 (575)
Q Consensus       188 a~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~  263 (575)
                      +||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.    ..+.++.+..+.+  ....++
T Consensus       160 a~cGv~GlKPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~  237 (424)
T PRK05962        160 ALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEP  237 (424)
T ss_pred             HhhCceeeecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCH
Confidence            9999999999999999999999999999999999999999999999876543221    1234566655432  122467


Q ss_pred             HHHHHHHHHHHHHhCCCCCccccccchhh-ccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcC
Q 008170          264 KTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK  342 (575)
Q Consensus       264 ~~~~~~~~a~~~l~g~~~~~~~~~~~~v~-~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~  342 (575)
                      ++.+.++++++.|+..+.        .++ ..+|.+.+.             +.... ....+...+....+..+.+...
T Consensus       238 ~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~-------------~~~~~-~~~~~~~~e~~~~~~~~~~~~~  295 (424)
T PRK05962        238 DVAAAFEASLAALEKAGA--------RIADLAIDDLIAR-------------LAEAT-RIGSIAGIEASHIHADWLADLD  295 (424)
T ss_pred             HHHHHHHHHHHHHHHCCC--------EEEEeccchHHHH-------------HHHHH-HHhHHHHHHHHHHHHHHHhhch
Confidence            899999999998863332        111 112221100             00000 0011223344445555666566


Q ss_pred             CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhh---Hhhhhcccc
Q 008170          343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEF---HDRTLVLSS  419 (575)
Q Consensus       343 ~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~  419 (575)
                      ..+++.++.++..+..++..+|.++++.|..+++.++++|+++|+||+||+|.+||+++........+   ...++.||.
T Consensus       296 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~  375 (424)
T PRK05962        296 ANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQ  375 (424)
T ss_pred             hhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCc
Confidence            77899999999988889999999999999999999999999999999999999999987532211112   222345899


Q ss_pred             ccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       420 ~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      ++|++|+|++|||+|. +|||+||||+|++++|..||++++.+|+.+.
T Consensus       376 ~~n~~G~Pa~svP~g~-~glPvGlqlvg~~~~D~~lL~~a~~le~~l~  422 (424)
T PRK05962        376 VANQFDLCSITLPMPG-MALPAGLMLTARNGSDRRLLAAAASVEKLLE  422 (424)
T ss_pred             CccccCCCeEEEECCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999984 7999999999999999999999999998764

>PRK07486 amidase; Provisional

Probab=100.00  E-value=6.7e-88  Score=718.67  Aligned_cols=421  Identities=22%  Similarity=0.259  Sum_probs=332.4

Q ss_pred             HHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCC-CCCCCC-------CCCCCCCCCCceEEeecccc
Q 008170           19 VVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELI-PFPQPP-------PPAARQPLAGLKFAIKDVFD   85 (575)
Q Consensus        19 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~a~-------~~~~~gpL~Gvpi~vKD~~~   85 (575)
                      ..++++|+..     +|++|+++.+++||.+.|+.+|||++.++++ ++++|+       .+...||||||||+|||+|+
T Consensus        11 ~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~   90 (484)
T PRK07486         11 RLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPKDLAP   90 (484)
T ss_pred             hCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEecccc
Confidence            3366666644     8999999999999999999999999986533 234332       34567999999999999999


Q ss_pred             cCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 008170           86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVA  165 (575)
Q Consensus        86 ~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaa  165 (575)
                      ++|++||+||+.+.+  .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||
T Consensus        91 v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaa  168 (484)
T PRK07486         91 TKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAA  168 (484)
T ss_pred             cCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHH
Confidence            999999999999875  678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCC-CCCCCCccccccccCHHHHHHHHHHHccCCCCCc--
Q 008170          166 VAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL-PNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--  242 (575)
Q Consensus       166 VAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--  242 (575)
                      ||+|++++|||||||||||+||+||||||||||+||||+.|.+ ++++++|++|||+||++|++.+++++.+.+..++  
T Consensus       169 VAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~  248 (484)
T PRK07486        169 LALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLS  248 (484)
T ss_pred             HHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCCCCCCcc
Confidence            9999999999999999999999999999999999999999755 7899999999999999999999999876532221  


Q ss_pred             ---------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCC
Q 008170          243 ---------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTS  307 (575)
Q Consensus       243 ---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~  307 (575)
                                     ..+.++.+..+.+. ....++++.++++++++.|+..+.        .++...+.+..       
T Consensus       249 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~-------  312 (484)
T PRK07486        249 LAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELGC--------DVEAALPAFPP-------  312 (484)
T ss_pred             ccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCcch-------
Confidence                           12345655543321 112467889999999999864332        22211121100       


Q ss_pred             CCCchhHHHHHHHHHHHHHhhhhhhhHHHHHH--HcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCC
Q 008170          308 PENGTATLKALSSVMLSLQRYEFKTIYEEWVK--SAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDD  385 (575)
Q Consensus       308 ~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~--~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~  385 (575)
                              ....+.+..+...+..........  .....+++.++.+++.+..++..+|.++++.|+.+++.+.++|+++
T Consensus       313 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~  384 (484)
T PRK07486        313 --------ERLWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERY  384 (484)
T ss_pred             --------HHHHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                    000011111111111111112211  1235678999999988888999999999999999999999999999


Q ss_pred             CEEEecCCCCCCCcCCccc-----ccchhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHH
Q 008170          386 KILVIPTVSDPPLKLNTKK-----TYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTV  459 (575)
Q Consensus       386 DvLl~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a  459 (575)
                      |+||+||+|.+||+++...     .........+..+|.++|++|+|++|||+|.. +|||+||||+|++++|..||+++
T Consensus       385 D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a  464 (484)
T PRK07486        385 DFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLA  464 (484)
T ss_pred             CEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHH
Confidence            9999999999998876421     00111112334578899999999999999987 89999999999999999999999


Q ss_pred             HHHHHH
Q 008170          460 LDLYDS  465 (575)
Q Consensus       460 ~~~~~~  465 (575)
                      +.+|+.
T Consensus       465 ~~le~~  470 (484)
T PRK07486        465 HAYEQA  470 (484)
T ss_pred             HHHHhc
Confidence            999885

>PRK07042 amidase; Provisional

Probab=100.00  E-value=6.7e-88  Score=715.03  Aligned_cols=414  Identities=18%  Similarity=0.158  Sum_probs=331.7

Q ss_pred             HHHHhh-----chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCC
Q 008170           21 IGVSVV-----GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG   88 (575)
Q Consensus        21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G   88 (575)
                      ++.+|+     +.+|++|+++.+++||++.|+.+|||++.++++++++|+       .+..+||||||||+|||||+|+|
T Consensus         8 ~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G   87 (464)
T PRK07042          8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENIATRG   87 (464)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcccccCC
Confidence            555555     448999999999999999999999999998877666553       34567999999999999999999


Q ss_pred             ccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHh
Q 008170           89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA  168 (575)
Q Consensus        89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa  168 (575)
                      ++||+||+.+.+  .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus        88 ~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa  165 (464)
T PRK07042         88 VPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAA  165 (464)
T ss_pred             cccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHHHHHHc
Confidence            999999999864  577899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc------
Q 008170          169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------  242 (575)
Q Consensus       169 g~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------  242 (575)
                      |++++|||||||||||+|||||||||||||+||||+.|..    +.|++|||||+++|++.+++++.+.+..+.      
T Consensus       166 G~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~~  241 (464)
T PRK07042        166 GYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGTSLPPQ  241 (464)
T ss_pred             CCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCccccCCC
Confidence            9999999999999999999999999999999999998843    358999999999999999999876543221      


Q ss_pred             ----------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcch-HHhhhccCCCCCc
Q 008170          243 ----------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSL-KGLRAQSTSPENG  311 (575)
Q Consensus       243 ----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l-~~~~~~~~~~~~~  311 (575)
                                ..+.|+.+..+... ....++++.++++++++.|+..+.        .+++..+.+ ..+          
T Consensus       242 ~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~----------  302 (464)
T PRK07042        242 DIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGA--------IVEPVPPFLTRAM----------  302 (464)
T ss_pred             CcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCchhHHH----------
Confidence                      12245655544321 112467899999999999864332        111111111 111          


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEec
Q 008170          312 TATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIP  391 (575)
Q Consensus       312 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~P  391 (575)
                             .+.+..+...+....+..+.+.....+.+.++.++..+..++..+|.+++..|..+++.+.++|+++|+||+|
T Consensus       303 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~P  375 (464)
T PRK07042        303 -------LDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSP  375 (464)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcC
Confidence                   0000111111222233334444456688999999988888999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCccccc-chhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          392 TVSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       392 t~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      |+|.+||+++..... ........+.||.+||++|+|++|||+|+. +|||+||||+|++++|..||++++.+|+..
T Consensus       376 t~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~  452 (464)
T PRK07042        376 VAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWR  452 (464)
T ss_pred             CCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhc
Confidence            999999988642211 111111223589999999999999999987 899999999999999999999999998854

>PRK06170 amidase; Provisional

Probab=100.00  E-value=1e-87  Score=719.08  Aligned_cols=422  Identities=22%  Similarity=0.270  Sum_probs=333.6

Q ss_pred             hhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCC------CCCCCCCCCceEEeeccc
Q 008170           16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP------PAARQPLAGLKFAIKDVF   84 (575)
Q Consensus        16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~------~~~~gpL~Gvpi~vKD~~   84 (575)
                      +++..++.+|+++     +|++|+++.+++||+++|+.+|||++.++++++++|+.      ....||||||||+|||+|
T Consensus         8 ~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~gpL~GvPv~VKD~~   87 (490)
T PRK06170          8 EWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGIPVTVKESF   87 (490)
T ss_pred             hhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCCCCCcCCceEEEeccc
Confidence            4555577777755     89999999999999999999999999988777665531      124689999999999999


Q ss_pred             ccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008170           85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV  164 (575)
Q Consensus        85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa  164 (575)
                      +|+|++||+||+.|.+  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus        88 ~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa  165 (490)
T PRK06170         88 NVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAA  165 (490)
T ss_pred             ccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHHHHH
Confidence            9999999999999975  57889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCC-----C--CCCCccccccccCHHHHHHHHHHHccC
Q 008170          165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLP-----N--SQSLDTVGLLARNASILHRVGHVLLQL  237 (575)
Q Consensus       165 aVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p-----~--~~~~d~~G~~ar~~~d~~~v~~~~~~~  237 (575)
                      |||+|++++|||||||||||+|||||||||||||+||||+.|++|     +  +.++|++|||+||++|++.+++++.+.
T Consensus       166 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~l~g~  245 (490)
T PRK06170        166 ALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVMAGP  245 (490)
T ss_pred             HHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999988     4  346999999999999999999998875


Q ss_pred             CCCCc---------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhcc---CcchH
Q 008170          238 NAVEP---------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN---VPSLK  299 (575)
Q Consensus       238 ~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~---~p~l~  299 (575)
                      +..+.               .++.|+.+..+.+  ....++++.++++++++.|+..+.        .+++.   .|.+.
T Consensus       246 d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~  315 (490)
T PRK06170        246 DPLDGGVAYRLALPPARHGRLKDFRVLVLDEHP--LLPTDAAVRAAIERLAAALADAGA--------RVVRHSPLLPDLA  315 (490)
T ss_pred             CccccccccccCCCcccccccCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHCCC--------EEEEcCCCCCchH
Confidence            43220               0224566554432  123467899999999999864332        11111   12222


Q ss_pred             HhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhH-----HHHHHH--cCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008170          300 GLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIY-----EEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRN  372 (575)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~-----~~~~~~--~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~  372 (575)
                      ...                 ..+..+...+....+     ......  ....+.+.++.++..+..++..+|.++++.|+
T Consensus       316 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~  378 (490)
T PRK06170        316 ESA-----------------RLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAARE  378 (490)
T ss_pred             HHH-----------------HHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHH
Confidence            110                 001111110110000     110000  12235566777777777889999999999999


Q ss_pred             HHHHHHHHHhCCCCEEEecCCCCCCCcCCccccc------c----hhhHhhhhccccccccCCCCccccccccc-CCCCc
Q 008170          373 EMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY------S----AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPI  441 (575)
Q Consensus       373 ~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~------~----~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPv  441 (575)
                      .+++.+.++|+++|+||+||+|.+||+++.....      .    ..+. ..+.||.++|++|+|++|||+|+. +|||+
T Consensus       379 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~g~~~~GlPv  457 (490)
T PRK06170        379 ELRAAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYW-DQLVWAGLATLPGLPATAIPIGLSATGLPV  457 (490)
T ss_pred             HHHHHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchh-hhhhhcceecccCCCeEEEECCcCCCCCce
Confidence            9999999999999999999999999998743110      0    0111 223589999999999999999997 89999


Q ss_pred             ccccccccCCchhHHhHHHHHHHHhh
Q 008170          442 SISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       442 Glqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      ||||+|++|+|..||++++.+|+.+.
T Consensus       458 GlQlig~~~~D~~LL~~a~~lE~~~~  483 (490)
T PRK06170        458 GVQIVGPALEDRTPLRLAELLEEEFG  483 (490)
T ss_pred             eEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998643

>PRK12470 amidase; Provisional

Probab=100.00  E-value=8.4e-88  Score=712.32  Aligned_cols=419  Identities=20%  Similarity=0.221  Sum_probs=330.5

Q ss_pred             hHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeeccc
Q 008170           17 VWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF   84 (575)
Q Consensus        17 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~   84 (575)
                      ++..++++|+.+     +|++|+++.+++||++.|+.+|||++.++++++++|+       .+... |||||||+|||||
T Consensus         6 ~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~~   84 (462)
T PRK12470          6 LAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDDV   84 (462)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecCc
Confidence            444577777755     8999999999999999999999999998877665553       23344 9999999999999


Q ss_pred             ccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008170           85 DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAV  164 (575)
Q Consensus        85 ~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaa  164 (575)
                      +++|++||+||+.+ .  .++.+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus        85 ~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa  161 (462)
T PRK12470         85 DVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAA  161 (462)
T ss_pred             ccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHHH
Confidence            99999999999975 2  57789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC---
Q 008170          165 AVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE---  241 (575)
Q Consensus       165 aVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---  241 (575)
                      |||+|++++|||||||||||||||||||||||||+||||+.|++|+++++|++|||+|+|+|++.+++++.+.+..+   
T Consensus       162 AVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~~  241 (462)
T PRK12470        162 AVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEF  241 (462)
T ss_pred             HHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887543221   


Q ss_pred             ------cccCceEEeccchhh-hcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhH
Q 008170          242 ------PRRARRLIFADDIFQ-LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTAT  314 (575)
Q Consensus       242 ------~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~  314 (575)
                            ...+.|+.+..+.+. .....++++.+.++++++.|+..+.        .+++..|.+....            
T Consensus       242 ~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~------------  301 (462)
T PRK12470        242 VAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGH--------DVVVRDPDYPAAT------------  301 (462)
T ss_pred             hhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCC--------EEEEeCCCchhHH------------
Confidence                  112345666544321 1122467899999999999874332        1111112111000            


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCC
Q 008170          315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVS  394 (575)
Q Consensus       315 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~  394 (575)
                      ...+...+  ..  .+ ... .........+++.++.++..+..++..+|.....++.++++.|+++|+++|+||+||+|
T Consensus       302 ~~~~~~~~--~~--~~-~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p  375 (462)
T PRK12470        302 YANYLPRF--FR--GI-SDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTA  375 (462)
T ss_pred             HHHHHHHH--HH--HH-HHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCC
Confidence            00000000  00  00 000 01112334578899999999988888888744455558999999999999999999999


Q ss_pred             CCCCcCCccccc--chhh--HhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHH
Q 008170          395 DPPLKLNTKKTY--SAEF--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       395 ~~ap~~~~~~~~--~~~~--~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~  465 (575)
                      ++||+++.....  ...+  ...+..||.++|++|+|+||||+|.. +|||+||||+|++++|..||+++.++|+.
T Consensus       376 ~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~  451 (462)
T PRK12470        376 TGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA  451 (462)
T ss_pred             CCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence            999998743211  1111  12334589999999999999999987 89999999999999999999999999875

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=100.00  E-value=1e-87  Score=714.37  Aligned_cols=416  Identities=27%  Similarity=0.359  Sum_probs=325.3

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCC--CCCCCCCceEEeecccccCCccccCCChhhhccCCC
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPA--ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHE  104 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~--~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~  104 (575)
                      +.+|++|+++.+++||+++|+.+|||++.++++++++|++..  ..||||||||+|||+|+|+|++||+||+.|.+  .+
T Consensus         8 g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~   85 (460)
T TIGR00132         8 KEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YI   85 (460)
T ss_pred             CCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CC
Confidence            558999999999999999999999999998876666554221  12899999999999999999999999999975  57


Q ss_pred             CCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccc
Q 008170          105 AERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR  184 (575)
Q Consensus       105 ~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR  184 (575)
                      +.+||++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|||||||||||
T Consensus        86 ~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIR  165 (460)
T TIGR00132        86 PPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIR  165 (460)
T ss_pred             CCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcch
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------------ccCce
Q 008170          185 VPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-----------------RRARR  247 (575)
Q Consensus       185 iPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-----------------~~~~~  247 (575)
                      +||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+.                 ..+.+
T Consensus       166 iPAa~cGv~G~KPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lr  245 (460)
T TIGR00132       166 QPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLK  245 (460)
T ss_pred             hhhHhcCceeECCCCCcCCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCE
Confidence            9999999999999999999999999999999999999999999999999886543221                 12235


Q ss_pred             EEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHh
Q 008170          248 LIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR  327 (575)
Q Consensus       248 l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  327 (575)
                      +.+..+.+.   ..++++.++++++++.|+..+.       +.++...|.+......+        ......+....+..
T Consensus       246 ig~~~~~~~---~~~~~v~~a~~~a~~~L~~~G~-------~v~~~~~p~~~~~~~~~--------~~~~~~e~~~~~~~  307 (460)
T TIGR00132       246 VGVVKEFSE---EMDKEVQEKFENALEVLEELGA-------EIVEVSFPHVKYALPIY--------YIISPSEASSNLAR  307 (460)
T ss_pred             EEEECcccc---cCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCcHHHHHHHH--------HHHHHHHHHHHHhc
Confidence            555544321   2457888999999998864332       01111223322111100        00000011110111


Q ss_pred             h---------hhhhhHHHHHHH-cCCCCCHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCCEEEecC
Q 008170          328 Y---------EFKTIYEEWVKS-AKPRLGYNVFERVLEAINTT-----QDNIKILYKVRNEMRAALQRLLKDDKILVIPT  392 (575)
Q Consensus       328 ~---------e~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt  392 (575)
                      +         .....+.+++.. ....+++.++.++..+...+     ..+|.++++.|.++++.+.++|+++|+||+||
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt  387 (460)
T TIGR00132       308 YDGIRYGYRIEEPNSLKELYAKTRAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPT  387 (460)
T ss_pred             cccccccccccccccHHHHHhhcchhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCC
Confidence            1         001112333332 23447788888876654433     34488899999999999999999999999999


Q ss_pred             CCCCCCcCCccccc-chhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHH
Q 008170          393 VSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYD  464 (575)
Q Consensus       393 ~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~  464 (575)
                      +|.+||++++.... ...+. . ..||.++|++|+|++|||+|+. +|+|+||||+|++|+|..||++++.+|+
T Consensus       388 ~~~~a~~~~~~~~~~~~~~~-~-~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~  459 (460)
T TIGR00132       388 APTLPFKIGEKLDDPLEMYL-S-DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ  459 (460)
T ss_pred             CCCCCCCcccccCchHhhhc-c-cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence            99999999753221 11111 1 1379999999999999999998 8999999999999999999999999875

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK08310 amidase; Provisional

Probab=100.00  E-value=1.3e-86  Score=690.20  Aligned_cols=390  Identities=40%  Similarity=0.632  Sum_probs=320.2

Q ss_pred             CCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEee
Q 008170           46 RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGK  125 (575)
Q Consensus        46 ~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GK  125 (575)
                      ++.+|||+...+.-     ..++..||||||||+|||+|+++|++||+||+.|.....++.+||++|+|||+||||++||
T Consensus         4 ~~~~~a~~~~~~~~-----~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GK   78 (395)
T PRK08310          4 HDPFNAFIAKPDKP-----LPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGK   78 (395)
T ss_pred             CCccccccccCCCC-----CCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEe
Confidence            46799999986431     1245679999999999999999999999999998643457789999999999999999999


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCC
Q 008170          126 TVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI  205 (575)
Q Consensus       126 tn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~  205 (575)
                      ||||||+++.+|+|++||.|+||||++|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.
T Consensus        79 Tn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~  158 (395)
T PRK08310         79 TQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLE  158 (395)
T ss_pred             ccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCcccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccc
Q 008170          206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHM  285 (575)
Q Consensus       206 G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~  285 (575)
                      |+.|+++++|++|||+||++|++.+++++.+.+..+...+.++.+..+.+   ...++++.++++++++.|+...     
T Consensus       159 G~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~-----  230 (395)
T PRK08310        159 GVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHL-----  230 (395)
T ss_pred             CCcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhC-----
Confidence            99999999999999999999999999999875543333345666655433   2246788899999999885321     


Q ss_pred             cccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHH
Q 008170          286 NVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIK  365 (575)
Q Consensus       286 ~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~  365 (575)
                        ++.++...+..               .+..+...+..+...+.+..+..+.+.....+++.++.+++.+..++..+|.
T Consensus       231 --g~vv~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  293 (395)
T PRK08310        231 --GPAKPASVPPL---------------SLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVE  293 (395)
T ss_pred             --CceeeecCCcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHH
Confidence              11111111110               0111111222233334455566666666677899999999989889999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCccccc
Q 008170          366 ILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISF  445 (575)
Q Consensus       366 ~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqi  445 (575)
                      ++.+.|+.+++.+.++|+++|+||+||++.+||+++........+...++.||.++|++|+|+++||+|..+|||+||||
T Consensus       294 ~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQi  373 (395)
T PRK08310        294 AARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSL  373 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEE
Confidence            99999999999999999999999999999999998754322222223344689999999999999999988999999999


Q ss_pred             ccccCCchhHHhHHHHHHHH
Q 008170          446 ITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       446 vg~~~~d~~ll~~a~~~~~~  465 (575)
                      +|++++|..||++++++|+.
T Consensus       374 vg~~~~D~~lL~~a~~le~~  393 (395)
T PRK08310        374 IGPRGSDRSLLALAQTIAAA  393 (395)
T ss_pred             ECCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999874

>PRK07488 indole acetimide hydrolase; Validated

Probab=100.00  E-value=4.7e-87  Score=710.01  Aligned_cols=421  Identities=26%  Similarity=0.322  Sum_probs=332.4

Q ss_pred             hhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecc
Q 008170           16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDV   83 (575)
Q Consensus        16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~   83 (575)
                      +++..++++|+.+     +|++|+++.+++||++++ .+|||++.++++++++|+       .+...| ||||||+|||+
T Consensus         7 ~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD~   84 (472)
T PRK07488          7 DVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKDN   84 (472)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEcc
Confidence            4555578887755     899999999999999876 699999998877665553       233445 99999999999


Q ss_pred             cccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008170           84 FDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSA  163 (575)
Q Consensus        84 ~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa  163 (575)
                      |+|+|++||+||+.|.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++++|||||||||
T Consensus        85 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  162 (472)
T PRK07488         85 INTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTA  162 (472)
T ss_pred             cccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Confidence            99999999999999875  5678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-
Q 008170          164 VAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-  242 (575)
Q Consensus       164 aaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-  242 (575)
                      ||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..+. 
T Consensus       163 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~~  242 (472)
T PRK07488        163 AAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPAP  242 (472)
T ss_pred             HHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999887654321 


Q ss_pred             --ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHH
Q 008170          243 --RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSS  320 (575)
Q Consensus       243 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~  320 (575)
                        ..+.++.+..+.+  ....++++.++++++++.|+..+.       +.++...|.+.++...                
T Consensus       243 ~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~-------~v~~~~~~~~~~~~~~----------------  297 (472)
T PRK07488        243 VALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGV-------TFVELDLPGLHELNEA----------------  297 (472)
T ss_pred             cCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCC-------EEEeeCCcCHHHHhhh----------------
Confidence              2345666654332  122467889999999998864332       0011122322211000                


Q ss_pred             HHHHHHhhhhhhhHHHHHHHcC----------CCCCHHHHHHHHHH---hcCCHHHHHHHHHH-HHHHHHHHHHHhC--C
Q 008170          321 VMLSLQRYEFKTIYEEWVKSAK----------PRLGYNVFERVLEA---INTTQDNIKILYKV-RNEMRAALQRLLK--D  384 (575)
Q Consensus       321 ~~~~l~~~e~~~~~~~~~~~~~----------~~l~~~~~~~l~~~---~~~s~~~~~~a~~~-r~~~~~~~~~~~~--~  384 (575)
                      ....+..+++...+..++....          ...++.++.+++.+   ..++..+|.++++. |+.+++.++++|+  +
T Consensus       298 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~  377 (472)
T PRK07488        298 VGFPIALYEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHG  377 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            0011111233333333332221          12256666655432   35788899999887 9999999999998  7


Q ss_pred             CCEEEecCCCCCCCcCCcccc------cchhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHh
Q 008170          385 DKILVIPTVSDPPLKLNTKKT------YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLD  457 (575)
Q Consensus       385 ~DvLl~Pt~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~  457 (575)
                      +|+||+||+|.+||++++...      ....+ ..+..+|.++|++|+|+||||+|+. +|||+||||+|++++|..||+
T Consensus       378 ~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL~  456 (472)
T PRK07488        378 LDAILFPTTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLA  456 (472)
T ss_pred             CCEEEeCCCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHHH
Confidence            899999999999999975311      11222 2344579999999999999999997 899999999999999999999


Q ss_pred             HHHHHHHHh
Q 008170          458 TVLDLYDSL  466 (575)
Q Consensus       458 ~a~~~~~~~  466 (575)
                      ++.++|+..
T Consensus       457 ~A~~lE~~~  465 (472)
T PRK07488        457 IGRALERVL  465 (472)
T ss_pred             HHHHHHHhh
Confidence            999999853

>PRK07235 amidase; Provisional

Probab=100.00  E-value=2e-86  Score=705.34  Aligned_cols=418  Identities=21%  Similarity=0.251  Sum_probs=332.5

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC------CCCCCCCCCCceEEeecccccCCccccCCChhhhc
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKR  100 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~  100 (575)
                      +.+++.|+++...+++..+++..|++....++++...|.      .+...||||||||+|||||+++|++||+||+.+.+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~  115 (502)
T PRK07235         36 ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG  115 (502)
T ss_pred             hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC
Confidence            669999999999999999999999999887776654442      45667999999999999999999999999999974


Q ss_pred             cCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCC
Q 008170          101 DHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI  180 (575)
Q Consensus       101 ~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtg  180 (575)
                        .++.+||++|+||++|||||+||||||||+++.+++|++||+|+||||++|+|||||||||||||+|++++|||||||
T Consensus       116 --~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtG  193 (502)
T PRK07235        116 --FVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQG  193 (502)
T ss_pred             --CCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCC
Confidence              678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCcc-----------------
Q 008170          181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPR-----------------  243 (575)
Q Consensus       181 GSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~-----------------  243 (575)
                      ||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++.                 
T Consensus       194 GSIRiPAa~cGvvGlKPT~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~  273 (502)
T PRK07235        194 GSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRG  273 (502)
T ss_pred             CCcCccHHHcCcceecCCCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccC
Confidence            999999999999999999999999999999999999999999999999999999875433211                 


Q ss_pred             -cCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhh-ccCcchHHhhhccCCCCCchhHHHHH-HH
Q 008170          244 -RARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATLKAL-SS  320 (575)
Q Consensus       244 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~-~~~p~l~~~~~~~~~~~~~~~~~~~~-~~  320 (575)
                       .+.|+.+..+.+.. ...++++.++++++++.|+..++        .|+ ..+|........          +..+ .+
T Consensus       274 ~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~--------~V~~v~~p~~~~~~~~----------~~~~~~~  334 (502)
T PRK07235        274 VKGLKIGILREGFGL-PNSEPEVDEAVRAAAKRLEDLGA--------TVEEVSIPLHRLALAI----------WNPIATE  334 (502)
T ss_pred             CcCCEEEEeccccCC-CCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchhhHHHH----------HHHHHHH
Confidence             12345554443211 12367899999999999874432        111 122221110000          0000 00


Q ss_pred             HHH--HHHh------------hhhhhhHHHHHHHcCCCCCHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHh
Q 008170          321 VML--SLQR------------YEFKTIYEEWVKSAKPRLGYNVFERVLEAI----NTTQDNIKILYKVRNEMRAALQRLL  382 (575)
Q Consensus       321 ~~~--~l~~------------~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~s~~~~~~a~~~r~~~~~~~~~~~  382 (575)
                      ...  .+..            .++...+..+.......+++.++.++..+.    .++..+|.++++.|+++++.++++|
T Consensus       335 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~  414 (502)
T PRK07235        335 GATAQMMLGNGYGFNWKGLYDTGLLDAFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEAL  414 (502)
T ss_pred             HHHHHhhhccccccccccccchhHHHHHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            000  0000            011112222223344568899998887665    3577899999999999999999999


Q ss_pred             CCCCEEEecCCCCCCCcCCcccccchhhHh---hhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHH
Q 008170          383 KDDKILVIPTVSDPPLKLNTKKTYSAEFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTV  459 (575)
Q Consensus       383 ~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~---~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a  459 (575)
                      +++|+||+||+|.+||+++........+..   .++.||.+||++|+|++|||+|+.+|||+||||+|++|+|..||+++
T Consensus       415 ~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A  494 (502)
T PRK07235        415 RKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAA  494 (502)
T ss_pred             hcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHH
Confidence            999999999999999999753222222221   23458999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 008170          460 LDLYDS  465 (575)
Q Consensus       460 ~~~~~~  465 (575)
                      .++|+.
T Consensus       495 ~~~E~~  500 (502)
T PRK07235        495 AAFEAS  500 (502)
T ss_pred             HHHHhh
Confidence            999874

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=100.00  E-value=2.2e-87  Score=711.54  Aligned_cols=414  Identities=25%  Similarity=0.331  Sum_probs=323.9

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~   99 (575)
                      +.+|++|+++.+++||++.|+.+|||++.++++++++|+       .+. .||||||||+|||||+|+|++||+||..|.
T Consensus         4 g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~   82 (459)
T PRK00012          4 KEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILE   82 (459)
T ss_pred             CcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhc
Confidence            568999999999999999999999999998877666554       233 789999999999999999999999999987


Q ss_pred             ccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCC
Q 008170          100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT  179 (575)
Q Consensus       100 ~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDt  179 (575)
                      +  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+||||||
T Consensus        83 ~--~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDt  160 (459)
T PRK00012         83 N--YVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDT  160 (459)
T ss_pred             c--CCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCC
Confidence            5  57889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-----------------
Q 008170          180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-----------------  242 (575)
Q Consensus       180 gGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-----------------  242 (575)
                      ||||||||+||||||||||+||||+.|++|+++++|++||||||++|++.+++++.+.+..+.                 
T Consensus       161 gGSiRiPAa~cGvvG~KPT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~  240 (459)
T PRK00012        161 GGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKD  240 (459)
T ss_pred             CCccchhHHHcCceeecCCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhccc
Confidence            999999999999999999999999999999999999999999999999999999876442211                 


Q ss_pred             ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcchHHhhhccCCCCCchhHHHHHHHH
Q 008170          243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSV  321 (575)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~  321 (575)
                      ..+.++.+..+.+  ....++++.++++++++.|...+.        .+ +...|.+......+        ......+.
T Consensus       241 ~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~~~--------~~~~~~~~  302 (459)
T PRK00012        241 IKGLKIGVPKEYF--GEGLDPEVKEAVEAAIKKLEDLGA--------EIVEVSLPHTKYALPAY--------YIIAPAEA  302 (459)
T ss_pred             ccccEEEEEcccc--cccCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchHHHHHHH--------HHHHHHHH
Confidence            1223565554432  122357889999999998864332        11 11223222110000        00000010


Q ss_pred             HHHHHhh---------hhhhhHHHHHHH-cCCCCCHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 008170          322 MLSLQRY---------EFKTIYEEWVKS-AKPRLGYNVFERVLEAINT-----TQDNIKILYKVRNEMRAALQRLLKDDK  386 (575)
Q Consensus       322 ~~~l~~~---------e~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~D  386 (575)
                      ...+..+         .....+.+++.. ....+++.++.++..+...     ...+|.++++.|.++++.+.++|+++|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  382 (459)
T PRK00012        303 SSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVD  382 (459)
T ss_pred             HHHHhhcccccccccccccccHHHHHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            0011010         000112223222 2235788888888765443     234588899999999999999999999


Q ss_pred             EEEecCCCCCCCcCCccccc-chhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHH
Q 008170          387 ILVIPTVSDPPLKLNTKKTY-SAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLY  463 (575)
Q Consensus       387 vLl~Pt~~~~ap~~~~~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~  463 (575)
                      +||+||+|.+||+++..... ...+.  ...||.++|++|+|++|||+|+. +|+|+||||+|++++|..||++++++|
T Consensus       383 ~ll~Pt~~~~a~~~~~~~~~~~~~~~--~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E  459 (459)
T PRK00012        383 VILGPTAPTTAFKIGEKTDDPLAMYL--SDIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE  459 (459)
T ss_pred             EEEeCCCCCCCcccccccCchHhhhc--cccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence            99999999999999753211 11121  12379999999999999999988 799999999999999999999998874

>PRK06061 amidase; Provisional

Probab=100.00  E-value=1.8e-86  Score=705.98  Aligned_cols=408  Identities=21%  Similarity=0.241  Sum_probs=325.0

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCC------CCCCCCCCCceEEeecccccCCccccCCChhhhc
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP------PAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKR  100 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~------~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~  100 (575)
                      +.+|++|+++.+++||++.|+.+|||++.++++++++|++      ....+|||||||+|||||+++|++||+||+.+  
T Consensus        30 g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~pL~GvPv~vKD~~~v~G~~tt~Gs~~~--  107 (483)
T PRK06061         30 GAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAVKDDVDVAGVPTAFGTAGE--  107 (483)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEcccccCCceecCCCccc--
Confidence            4499999999999999999999999999988877665541      11235999999999999999999999999843  


Q ss_pred             cCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCC
Q 008170          101 DHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI  180 (575)
Q Consensus       101 ~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtg  180 (575)
                       ..++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|||||||
T Consensus       108 -~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaAVAaG~~~~alGtDtg  186 (483)
T PRK06061        108 -VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGA  186 (483)
T ss_pred             -CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHcCCCceEeecCCC
Confidence             2345799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc---------------ccC
Q 008170          181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------------RRA  245 (575)
Q Consensus       181 GSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------------~~~  245 (575)
                      |||||||+||||||||||+||||+.|+.|.++++|++|||+||++|++.+++++.+.+..+.               ..+
T Consensus       187 GSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~  266 (483)
T PRK06061        187 GSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHPGDRHRPPPVTVSDAVGRAPGP  266 (483)
T ss_pred             CcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCCCCCcccCCccchhhhccCCCC
Confidence            99999999999999999999999999999889999999999999999999999876532211               122


Q ss_pred             ceEEeccchhh--hcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHH
Q 008170          246 RRLIFADDIFQ--LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVML  323 (575)
Q Consensus       246 ~~l~~~~~~~~--~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~  323 (575)
                      .|+.+..+...  .....++++.+.++++++.|+..+.        .++...|.+....           ....+..   
T Consensus       267 lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~-----------~~~~~~~---  324 (483)
T PRK06061        267 LRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGH--------TVVPADPDYGLRL-----------GLNFLPR---  324 (483)
T ss_pred             cEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCchhhHH-----------HHHHHHH---
Confidence            34555433210  1122467899999999999864332        1111112111000           0000000   


Q ss_pred             HHHhhhhhhhHHHHHHH--cCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCC
Q 008170          324 SLQRYEFKTIYEEWVKS--AKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLN  401 (575)
Q Consensus       324 ~l~~~e~~~~~~~~~~~--~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~  401 (575)
                            ....+..+.+.  ....+++.++.+++.+..++..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+++
T Consensus       325 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~  398 (483)
T PRK06061        325 ------STAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVVLAPTTAQPPPRVG  398 (483)
T ss_pred             ------HHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCCCCCCcc
Confidence                  00111122221  2335789999999888889999999999999999999999999999999999999999997


Q ss_pred             ccccc--c--hhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHH
Q 008170          402 TKKTY--S--AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       402 ~~~~~--~--~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~  465 (575)
                      +....  .  ......+..||.++|++|+|++|||+|.. +|||+||||+|++++|..||+++..+|+.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le~~  467 (483)
T PRK06061        399 AFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEAV  467 (483)
T ss_pred             cccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHHhh
Confidence            53211  0  00011233589999999999999999987 89999999999999999999999999985

>PRK06529 amidase; Provisional

Probab=100.00  E-value=2.7e-86  Score=705.96  Aligned_cols=411  Identities=18%  Similarity=0.242  Sum_probs=323.9

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCC-CCCCCCCceEEeecc-cccCCccccCCChhhhccCCC
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPA-ARQPLAGLKFAIKDV-FDVKGYVTGFGSPDWKRDHHE  104 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~-~~gpL~Gvpi~vKD~-~~~~G~~tt~Gs~~~~~~~~~  104 (575)
                      +.+|++|+++.+++||++.|+.+|||++..+++++++|++.. ..+|||||||+|||| |+|+|++||+||+.+.+  .+
T Consensus        16 g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt~Gs~~~~~--~~   93 (482)
T PRK06529         16 GQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLSTSGSRLFKN--YQ   93 (482)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccCcchHHhcC--CC
Confidence            449999999999999999999999999998877666654322 225999999999998 79999999999999875  57


Q ss_pred             CCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccc
Q 008170          105 AERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVR  184 (575)
Q Consensus       105 ~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR  184 (575)
                      +.+||++|+|||+|||||+||||||||+++.+|.|++||+|+||||++|+|||||||||||||+|++++|||||||||||
T Consensus        94 ~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~aiGtDtgGSIR  173 (482)
T PRK06529         94 ATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIR  173 (482)
T ss_pred             CCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceeeecCCCCCee
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccceeeeCCCCCccCCCCCCCCCCCccc-cccccCHHHHHHHHHHHccCCCCCc---------------ccCceE
Q 008170          185 VPASFCGILGYRPSHGTVSMIGVLPNSQSLDTV-GLLARNASILHRVGHVLLQLNAVEP---------------RRARRL  248 (575)
Q Consensus       185 iPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~-G~~ar~~~d~~~v~~~~~~~~~~~~---------------~~~~~l  248 (575)
                      +|||||||||||||+||||..+..+.+++.|++ |||+|+++|++.+++++.+.+..++               ..+.|+
T Consensus       174 iPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lrI  253 (482)
T PRK06529        174 IPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKESLFQSLQRPLKI  253 (482)
T ss_pred             cChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccchhccccCCCCEE
Confidence            999999999999999999987766656677766 7999999999999998876432110               122355


Q ss_pred             EeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhcc--Cc-chHHhhhccCCCCCchhHHHHHHHHHHHH
Q 008170          249 IFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN--VP-SLKGLRAQSTSPENGTATLKALSSVMLSL  325 (575)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~--~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  325 (575)
                      .+..+.+. ....++++.++++++++.|+..+.        .+++.  .| .+....                 ..+..+
T Consensus       254 g~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~--------~v~ev~~~p~~~~~~~-----------------~~~~~~  307 (482)
T PRK06529        254 AFYQRSPD-GSPVSLDAAKALKQAVTFLREQGH--------EVVELEEFPLDMTEVM-----------------RSYYIM  307 (482)
T ss_pred             EEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCC--------EEEEcCCCCCCHHHHH-----------------HHHHHH
Confidence            55543221 122467899999999999864332        12111  12 111111                 111111


Q ss_pred             HhhhhhhhHHHHHHHc-----CCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcC
Q 008170          326 QRYEFKTIYEEWVKSA-----KPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKL  400 (575)
Q Consensus       326 ~~~e~~~~~~~~~~~~-----~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~  400 (575)
                      ...+....+..+.+..     ...+.+.++.++..+..++..+|.++++.|+.+++.++++|+++|+||+||+|++||++
T Consensus       308 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~~  387 (482)
T PRK06529        308 NSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPKH  387 (482)
T ss_pred             HHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCC
Confidence            1222222222222111     12356666667777878899999999999999999999999999999999999999998


Q ss_pred             Ccccccc----------------------hhh--HhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhH
Q 008170          401 NTKKTYS----------------------AEF--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFL  455 (575)
Q Consensus       401 ~~~~~~~----------------------~~~--~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~l  455 (575)
                      ++.....                      ..+  ...++.||.++|++|+|++|||+|.. +|||+||||+|++++|..|
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~l  467 (482)
T PRK06529        388 GQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLL  467 (482)
T ss_pred             CccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHHH
Confidence            7522110                      011  01234589999999999999999987 8999999999999999999


Q ss_pred             HhHHHHHHHH
Q 008170          456 LDTVLDLYDS  465 (575)
Q Consensus       456 l~~a~~~~~~  465 (575)
                      |+++..+|+.
T Consensus       468 L~~a~~le~~  477 (482)
T PRK06529        468 LGIAEQFEAA  477 (482)
T ss_pred             HHHHHHHHhc
Confidence            9999999874

>PRK07869 amidase; Provisional

Probab=100.00  E-value=2.1e-86  Score=704.97  Aligned_cols=422  Identities=18%  Similarity=0.245  Sum_probs=321.1

Q ss_pred             chhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCC-CCCCCCCCCceEEeecccccCC
Q 008170           15 PKVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP-PAARQPLAGLKFAIKDVFDVKG   88 (575)
Q Consensus        15 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~-~~~~gpL~Gvpi~vKD~~~~~G   88 (575)
                      .|++..|+++|+.+     +|++|+++.+++||++.|+.+|||++.++++++++|++ ....||||||||+|||||+++|
T Consensus        10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G   89 (468)
T PRK07869         10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAG   89 (468)
T ss_pred             hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCC
Confidence            34555577777744     89999999999999999999999999988776665543 2346899999999999999999


Q ss_pred             ccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHh
Q 008170           89 YVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAA  168 (575)
Q Consensus        89 ~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAa  168 (575)
                      ++||+||+.|.+  .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||||||+
T Consensus        90 ~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAa  167 (468)
T PRK07869         90 LPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA  167 (468)
T ss_pred             cccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHc
Confidence            999999999874  577899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCC-CCCCccccccccCHHHHHHHHHHHccCCCCC---c--
Q 008170          169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPN-SQSLDTVGLLARNASILHRVGHVLLQLNAVE---P--  242 (575)
Q Consensus       169 g~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---~--  242 (575)
                      |++++|||||||||||||||||||||||||+||||+.|+.|. ..++|++|||+||++|++.+++++.+.+..+   .  
T Consensus       168 G~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~  247 (468)
T PRK07869        168 GVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIG  247 (468)
T ss_pred             CCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchh
Confidence            999999999999999999999999999999999999998774 3478999999999999999999887543211   0  


Q ss_pred             ------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhh-ccCcchHHhhhccCCCCCchhHH
Q 008170          243 ------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENGTATL  315 (575)
Q Consensus       243 ------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~-~~~p~l~~~~~~~~~~~~~~~~~  315 (575)
                            ..+.|+.+..+.+. ....++++.++++++++.|+..+.        .++ ...|....+..          .+
T Consensus       248 ~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~~~~----------~~  308 (468)
T PRK07869        248 DVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGH--------RVEPVDLPVPASFVD----------DF  308 (468)
T ss_pred             hhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchHHHHH----------HH
Confidence                  12345655544321 023467899999999999864332        111 11222111100          00


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHH-----HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEe
Q 008170          316 KALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFE-----RVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVI  390 (575)
Q Consensus       316 ~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~-----~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~  390 (575)
                      ...    ..+...+.......   .....+.+....     ....+.. +..+|.++++.|+++++.+.++|+++|+||+
T Consensus       309 ~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~  380 (468)
T PRK07869        309 LLY----WGFLAFALVRGGRR---TFGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLT  380 (468)
T ss_pred             HHH----HHHHHHHHHhhhhh---hcccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEec
Confidence            000    00000000000000   011112222222     2122222 3456778888889999999999999999999


Q ss_pred             cCCCCCCCcCCccccc---chhh--HhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHH
Q 008170          391 PTVSDPPLKLNTKKTY---SAEF--HDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYD  464 (575)
Q Consensus       391 Pt~~~~ap~~~~~~~~---~~~~--~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~  464 (575)
                      ||+|.+||+++.....   ...+  ...+..||.++|++|+|++|||+|+. +|||+||||+|++++|..||+++..+|+
T Consensus       381 Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~  460 (468)
T PRK07869        381 PTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEE  460 (468)
T ss_pred             CCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHh
Confidence            9999999999753211   0111  11333579999999999999999987 8999999999999999999999999987


Q ss_pred             H
Q 008170          465 S  465 (575)
Q Consensus       465 ~  465 (575)
                      .
T Consensus       461 ~  461 (468)
T PRK07869        461 A  461 (468)
T ss_pred             c
Confidence            4

>PRK08186 allophanate hydrolase; Provisional

Probab=100.00  E-value=1.1e-85  Score=709.91  Aligned_cols=410  Identities=26%  Similarity=0.330  Sum_probs=329.3

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeecc-CCCCCCCCC----CCCCCCCCCceEEeecccccCCccccCCChhhhcc
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFE-LIPFPQPPP----PAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRD  101 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~a~~----~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~  101 (575)
                      +.+|++|+++.+++||++ ++.+|+|++..+ +++++++++    ....+|||||||+|||||||+|++||+||+.|.  
T Consensus        19 g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pTTaGs~~~~--   95 (600)
T PRK08186         19 GTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFA--   95 (600)
T ss_pred             CCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCcccCcCCHhHc--
Confidence            448999999999999998 679999999875 334443321    114689999999999999999999999999985  


Q ss_pred             CCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCC
Q 008170          102 HHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIG  181 (575)
Q Consensus       102 ~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgG  181 (575)
                       ..+.+||++|+||++||||++||||||||+++.+|.|+.||+|+||||++|+|||||||||||||+|++++||||||||
T Consensus        96 -~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~~~~alGTDtgG  174 (600)
T PRK08186         96 -YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLVSFALGTDTAG  174 (600)
T ss_pred             -CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCcceEeeecCCC
Confidence             3578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-------------ccCceE
Q 008170          182 CVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------------RRARRL  248 (575)
Q Consensus       182 SiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------------~~~~~l  248 (575)
                      |||+||+||||||||||+||||+.|++|.++++|++|||+||++|+..+++++.+.+..++             ....++
T Consensus       175 SiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~~~~~~~~~lrI  254 (600)
T PRK08186        175 SGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPADAPAALPAGPRV  254 (600)
T ss_pred             cchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCcccccccCCCCEE
Confidence            9999999999999999999999999999999999999999999999999999876543221             112355


Q ss_pred             Eeccc-hhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHh
Q 008170          249 IFADD-IFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR  327 (575)
Q Consensus       249 ~~~~~-~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  327 (575)
                      .++.+ ....  ..++++.++++++++.|...+.       +.++...|.+.+.                ....+...+.
T Consensus       255 gv~~~~~~~~--~~~~~v~~a~~~a~~~L~~~G~-------~v~ei~~~~~~~~----------------~~~~~~~~~~  309 (600)
T PRK08186        255 GVPRAAQLEF--FGDAEAEAAFAAALARLEALGA-------ELVEIDFSPFLEA----------------ARLLYEGPWV  309 (600)
T ss_pred             EEEcchhccc--cCCHHHHHHHHHHHHHHHHcCC-------eEEEecchhHHHH----------------HHHHHHHHHH
Confidence            55432 1111  1256788999999999864332       0111122222110                0001111122


Q ss_pred             hhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccc
Q 008170          328 YEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYS  407 (575)
Q Consensus       328 ~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~  407 (575)
                      .|.+..+.++++.....+++.++.++..+..++..+|.+++..|+.+++.++++|+++|+||+||+|.+++ +++.....
T Consensus       310 ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~~  388 (600)
T PRK08186        310 AERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAADP  388 (600)
T ss_pred             HHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCCc
Confidence            23444556666666667899999999988889999999999999999999999999999999999999875 33221111


Q ss_pred             hhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          408 AEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       408 ~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      ......+..||.++|++|+|+++||+|+. +|||+||||+|++++|..||+++..+|+..
T Consensus       389 ~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~  448 (600)
T PRK08186        389 IGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL  448 (600)
T ss_pred             hhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence            11222233589999999999999999987 899999999999999999999999999864

>PRK08137 amidase; Provisional

Probab=100.00  E-value=2.5e-85  Score=701.18  Aligned_cols=409  Identities=23%  Similarity=0.257  Sum_probs=321.1

Q ss_pred             HHHHHhhch-----hHHHHHHHHhhcccccC---CCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeeccc
Q 008170           20 VIGVSVVGF-----VVLAETLRRRRNPKLNG---RVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVF   84 (575)
Q Consensus        20 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~   84 (575)
                      .|+.+|+.+     +|++|+++.+++||++.   ||.+|||++..++ ++++|+       .+..+||||||||+|||+|
T Consensus         6 ~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~   84 (497)
T PRK08137          6 ERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLKDNI   84 (497)
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeeecce
Confidence            366666644     99999999999999976   7899999998764 444442       3456799999999999999


Q ss_pred             ccC-CccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeeccccccccc-----CCCCCCCCCCCCCCCCCCCCCCCC
Q 008170           85 DVK-GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMPSHIPGGS  158 (575)
Q Consensus        85 ~~~-G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~-----~~~~n~~~G~~~NP~~~~~~~GGS  158 (575)
                      +|+ |++||+||+.+.+  .++.+||++|+|||+|||||+||||||||+++     .+|+|++||+|+||||++|+||||
T Consensus        85 ~v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGS  162 (497)
T PRK08137         85 DAADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGS  162 (497)
T ss_pred             eecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Confidence            999 9999999999875  57889999999999999999999999999954     446899999999999999999999


Q ss_pred             ChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCC
Q 008170          159 SSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLN  238 (575)
Q Consensus       159 SgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~  238 (575)
                      |||||||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+
T Consensus       163 SgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~g~d  242 (497)
T PRK08137        163 SSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIAGGD  242 (497)
T ss_pred             ccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987643


Q ss_pred             CCCc--------------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcc
Q 008170          239 AVEP--------------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPS  297 (575)
Q Consensus       239 ~~~~--------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~  297 (575)
                      ..++                    .++.|+++..+.+    ..++++.++++++++.|+..+.        .+ +..+|.
T Consensus       243 ~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~  310 (497)
T PRK08137        243 PADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGA--------VVIDVVDLD  310 (497)
T ss_pred             CCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCC--------EEEeccCCc
Confidence            2211                    1223555554432    1467889999999999864332        11 111222


Q ss_pred             hHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHH----------------HH-------HcCCCCCHHHHHHHH
Q 008170          298 LKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEW----------------VK-------SAKPRLGYNVFERVL  354 (575)
Q Consensus       298 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~----------------~~-------~~~~~l~~~~~~~l~  354 (575)
                      +..+...                 +..+...|+...+..+                +.       .....+++.++.++.
T Consensus       311 ~~~~~~~-----------------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (497)
T PRK08137        311 DGDWGEA-----------------EKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQ  373 (497)
T ss_pred             hhhHHHH-----------------HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHH
Confidence            2111000                 0001111111111111                11       112457788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHH--HHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccc
Q 008170          355 EAINTTQDNIKILYKVRNEM--RAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVA  430 (575)
Q Consensus       355 ~~~~~s~~~~~~a~~~r~~~--~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pais  430 (575)
                      .+..++..+|.++++.++++  ++.+.++|+  ++|+||+||++ +||+++....  ..+.   ..+|.++|++|+|++|
T Consensus       374 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~Pais  447 (497)
T PRK08137        374 AAPGLDDPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLT  447 (497)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEE
Confidence            88888999999988655554  479999997  68999999999 8888864211  1111   1367899999999999


Q ss_pred             ccccccCCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          431 IPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       431 vP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      ||+|..+|||+||||+|++|+|..||+++.++|+..
T Consensus       448 vP~g~~~GlPvGvQlig~~~~d~~LL~~a~~lE~~~  483 (497)
T PRK08137        448 VPMGQVQGLPVGLSFIGAAWSEARLLELGYAYEQAT  483 (497)
T ss_pred             EeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999863

>PRK07139 amidase; Provisional

Probab=100.00  E-value=6.3e-82  Score=662.58  Aligned_cols=389  Identities=25%  Similarity=0.336  Sum_probs=299.3

Q ss_pred             CCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEee
Q 008170           46 RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGK  125 (575)
Q Consensus        46 ~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GK  125 (575)
                      +..+|++.+.+.+..       ...||||||||+|||+|+++|++||+||+.+.+  .++.+||++|+||++|||||+||
T Consensus        17 ~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~--~~~~~dA~vV~rLr~AGAIilGK   87 (439)
T PRK07139         17 NDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLEN--FKPSYNATVVQKLINAGAKPVAK   87 (439)
T ss_pred             ccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHcc--CCCCCchHHHHHHHHCCCEEEEe
Confidence            467788888754431       247899999999999999999999999999864  56789999999999999999999


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCC
Q 008170          126 TVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI  205 (575)
Q Consensus       126 tn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~  205 (575)
                      ||||||+++.+|.|++||+|+||||++|+|||||||||||||++ +++|||||||||||+|||||||||||||+||||+.
T Consensus        88 Tn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~  166 (439)
T PRK07139         88 VHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRY  166 (439)
T ss_pred             echhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCCCCCcCCC
Confidence            99999999999999999999999999999999999999999997 79999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc------------ccCceEEeccchhhhcCCCchHHHHHHHHHH
Q 008170          206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------------RRARRLIFADDIFQLSKVPKLKTIHVISKAI  273 (575)
Q Consensus       206 G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~  273 (575)
                      |++|+++++|++|||+|+++|++.+++++.+.+..++            ..+.++.+... +   ...++++.+++++++
T Consensus       167 G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~-~---~~~~~~v~~a~~~a~  242 (439)
T PRK07139        167 GLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLDC-F---KELEEYVAKKYKKLI  242 (439)
T ss_pred             CcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEECc-c---ccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999987543221            12345555322 1   123577889999999


Q ss_pred             HHHhCCCCCccccccchhh-ccCcc--hHHhhhccCCCCCchhHHHHHHHHHHHHHhh---h-----hhhhHHHHHH-Hc
Q 008170          274 ESLSGYQNPEHMNVGQYIA-SNVPS--LKGLRAQSTSPENGTATLKALSSVMLSLQRY---E-----FKTIYEEWVK-SA  341 (575)
Q Consensus       274 ~~l~g~~~~~~~~~~~~v~-~~~p~--l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---e-----~~~~~~~~~~-~~  341 (575)
                      +.|...+.        .++ ..+|.  +......+        ......+....+..+   .     ....+..++. ..
T Consensus       243 ~~L~~~G~--------~v~~~~~~~~~~~~~~~~~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (439)
T PRK07139        243 NILKSENI--------EVEKIKIDEKLLKAIKPVY--------KIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTR  306 (439)
T ss_pred             HHHHHCCC--------EEEEeCCChhHHHHHHHHH--------HHHHHHHHHHHHHhhcccccccccccccHHHHHHhcc
Confidence            98864432        111 11121  01000000        000000111111000   0     0001222322 23


Q ss_pred             CCCCCHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhc
Q 008170          342 KPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLV  416 (575)
Q Consensus       342 ~~~l~~~~~~~l~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~  416 (575)
                      ...+++.++.++..+..++.     .+|.++++.|+++++.++++|+++|+||+||+|++||+++........+. .+  
T Consensus       307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~-~~--  383 (439)
T PRK07139        307 SEGFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYM-DY--  383 (439)
T ss_pred             hhccCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhh-hh--
Confidence            34588889988887775553     35888999999999999999999999999999999999875311111221 11  


Q ss_pred             cccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          417 LSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       417 ~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      +|.++|++|+|+||||+|..+|||+||||+|++|+|..||++++++|+.+.
T Consensus       384 ~t~~~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~  434 (439)
T PRK07139        384 ILTISNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK  434 (439)
T ss_pred             cccCcccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            378899999999999999559999999999999999999999999998654

>TIGR02713 allophanate_hyd allophanate hydrolase

Probab=100.00  E-value=4.2e-82  Score=675.08  Aligned_cols=389  Identities=28%  Similarity=0.339  Sum_probs=306.6

Q ss_pred             CcEEeecc-CCCCCCCC------CCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeE
Q 008170           50 GAFLERFE-LIPFPQPP------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATC  122 (575)
Q Consensus        50 ~a~~~~~~-~~~~~~a~------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii  122 (575)
                      |||++... ++++++|+      .....+|||||||+|||||||+|++||+||+.|.   .++.+||++|+|||+||||+
T Consensus         2 ~a~i~~~~~e~al~~A~~ld~~~~~~~~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIi   78 (561)
T TIGR02713         2 EAWISLLSEEDLLAQAAALDARDARPERLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIV   78 (561)
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEE
Confidence            56776643 33333332      1123589999999999999999999999999885   36789999999999999999


Q ss_pred             EeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCc
Q 008170          123 IGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTV  202 (575)
Q Consensus       123 ~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v  202 (575)
                      +||||||||+++.+|.|++||.|+||||++|+|||||||||||||+|++++||||||||||||||+||||||||||+|||
T Consensus        79 iGKTN~~Efa~g~~g~n~~~G~t~NP~d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~v  158 (561)
T TIGR02713        79 VGKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLV  158 (561)
T ss_pred             EEEeCchHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-------------ccCceEEeccchhhhcCCCchHHHHHH
Q 008170          203 SMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------------RRARRLIFADDIFQLSKVPKLKTIHVI  269 (575)
Q Consensus       203 ~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~  269 (575)
                      |+.|++|.++++|++|||+||++|+..+++++.+.+..++             ..+.++.++.+... ....++++.+++
T Consensus       159 s~~Gv~p~~~slD~vG~~Arsv~D~~~~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~  237 (561)
T TIGR02713       159 STTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQL-EFFGDSQAEAAF  237 (561)
T ss_pred             cCCCccccccCCCeeechhCCHHHHHHHHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhc-CCCCCHHHHHHH
Confidence            9999999999999999999999999999999876543221             02235555541110 011246788999


Q ss_pred             HHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHH
Q 008170          270 SKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNV  349 (575)
Q Consensus       270 ~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~  349 (575)
                      +++++.|+..+.       +.++..+|.+.+.             ...+   +...+..+.+..+..+++...+.++|.+
T Consensus       238 ~~a~~~L~~~G~-------~v~~v~~~~~~~~-------------~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~p~~  294 (561)
T TIGR02713       238 AAAVERLEALGV-------EVVEIDFAPFLET-------------AALL---YEGPWVAERYAAVGEFVEAQPDALDPVV  294 (561)
T ss_pred             HHHHHHHHHCCC-------EEEEecchhHHHH-------------HHHH---HHHHHHHHHHHHHHHHHhhChhhcCHHH
Confidence            999999874332       0111122221110             0000   1111112333445556666667789999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcc
Q 008170          350 FERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQV  429 (575)
Q Consensus       350 ~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pai  429 (575)
                      +.++..+..++..+|.+++++|+.+++.++++|+++|+||+||+|.+++..+ ...........+..||.++|++|+|++
T Consensus       295 ~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~DvLl~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPAi  373 (561)
T TIGR02713       295 RGIITSATRFSAADAFAAQYRLAALRRKAEALLAGVDVLLVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAV  373 (561)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCceE
Confidence            9999988889999999999999999999999999999999999999875432 211111222233458999999999999


Q ss_pred             ccccccc-CCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          430 AIPIGKY-NEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       430 svP~G~~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      +||+|+. +|||+||||+|++++|..||+++..+|+..
T Consensus       374 svP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~  411 (561)
T TIGR02713       374 AVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAAS  411 (561)
T ss_pred             EeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHHhcc
Confidence            9999987 899999999999999999999999999853

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=100.00  E-value=1.2e-83  Score=686.76  Aligned_cols=397  Identities=29%  Similarity=0.377  Sum_probs=298.9

Q ss_pred             HHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCC
Q 008170           33 ETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEA  105 (575)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~  105 (575)
                      |+++.+++||+++|+.+|||++.+++.++++|+       .+..+||||||||+|||+|+++|++||+||..|.+  .++
T Consensus         1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~--~~~   78 (441)
T PF01425_consen    1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALAD--NPP   78 (441)
T ss_dssp             HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTT--BBB
T ss_pred             CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccC--cCc
Confidence            789999999999999999999998887776664       45678999999999999999999999999999975  678


Q ss_pred             CCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCcccc
Q 008170          106 ERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRV  185 (575)
Q Consensus       106 ~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRi  185 (575)
                      .+||++|+||++||||++||||||||+++.++.|+.||+|+||||+.++|||||||||||||+|++++|||||||||||+
T Consensus        79 ~~~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~  158 (441)
T PF01425_consen   79 TEDAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRI  158 (441)
T ss_dssp             SSS-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHH
T ss_pred             ccccchhhheecccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc-------------------ccCc
Q 008170          186 PASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP-------------------RRAR  246 (575)
Q Consensus       186 PAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-------------------~~~~  246 (575)
                      ||+||||||||||+|+||+.|++|+++++|++|||+||++|+..+++++.+.+..+.                   ..+.
T Consensus       159 PAa~~Gv~GlkPT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~l  238 (441)
T PF01425_consen  159 PAAFCGVVGLKPTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGL  238 (441)
T ss_dssp             HHHHHTSEEEE-STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-
T ss_pred             chhccccceeccccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCc
Confidence            999999999999999999999999999999999999999999999999987543211                   1234


Q ss_pred             eEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHH
Q 008170          247 RLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQ  326 (575)
Q Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~  326 (575)
                      ++.+..+.+. ....++++.++++++++.|+..+.       ..++..+|.+......                 +..+.
T Consensus       239 rIGv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~-------~vv~~~~p~~~~~~~~-----------------~~~~~  293 (441)
T PF01425_consen  239 RIGVPRDDGQ-WVPVDPEVRRAFEEAAEALEAAGA-------EVVEVDLPDLDEAMDA-----------------YYRIF  293 (441)
T ss_dssp             EEEEEGGGG--SSTSSHHHHHHHHHHHHHHHHTT--------EEEEE--TTGGHHHHH-----------------HHHHH
T ss_pred             cccccccccc-cccccHHHHHHHHHHHHhhccccc-------ccccccCchHHHHHHH-----------------HhhhH
Confidence            5666655431 123467899999999999974332       1112233433322110                 01111


Q ss_pred             hhhhhhh------HHHHH-HHcCCCCCHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCC
Q 008170          327 RYEFKTI------YEEWV-KSAKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDKILVIPTVS  394 (575)
Q Consensus       327 ~~e~~~~------~~~~~-~~~~~~l~~~~~~~l~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~  394 (575)
                      ..++...      +..+. ......+.+.+..++..+.....     ..|.++++.|.++++.+.++|+++|+||+||++
T Consensus       294 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~  373 (441)
T PF01425_consen  294 VSEGAANLARYKDFARLLAKWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTP  373 (441)
T ss_dssp             HHHHHHHHTTTCSHHHHHHHHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSS
T ss_pred             HHHHHHHHhhhhHHHHhhhcccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCC
Confidence            1111111      11111 12223455667666665543322     238889999999999999999999999999999


Q ss_pred             CCCCcCCccccc---ch--hhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHH
Q 008170          395 DPPLKLNTKKTY---SA--EFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLL  456 (575)
Q Consensus       395 ~~ap~~~~~~~~---~~--~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll  456 (575)
                      .+||+++.....   ..  .....+..+|.++|++|+|++|||+|+. +|||+||||+|++|+|..||
T Consensus       374 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL  441 (441)
T PF01425_consen  374 VPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL  441 (441)
T ss_dssp             SS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred             cCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence            999999875421   11  1122344578999999999999999997 89999999999999999986

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK06828 amidase; Provisional

Probab=100.00  E-value=3.2e-81  Score=661.98  Aligned_cols=396  Identities=21%  Similarity=0.224  Sum_probs=304.1

Q ss_pred             chhHHHHHHHHhhcccccCC---CCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCC-ccccCCC
Q 008170           27 GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKG-YVTGFGS   95 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G-~~tt~Gs   95 (575)
                      +.+|++|+++.+++||.++|   +.+|||++.+++ ++++|+       .+...||||||||+|||||+|+| ++||+||
T Consensus        25 g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~gg~~tt~Gs  103 (491)
T PRK06828         25 GKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIETNDSMHTSAGT  103 (491)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEEecCCCcCCcCc
Confidence            45999999999999999999   589999998766 444443       24557999999999999999996 9999999


Q ss_pred             hhhhccCCCCCCchHHHHHHHHCCCeEEeeccccccccc-----CCCCCCCCCCCCCCCCC---CCCCCCCChHHHHHHH
Q 008170           96 PDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMP---SHIPGGSSSGSAVAVA  167 (575)
Q Consensus        96 ~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~-----~~~~n~~~G~~~NP~~~---~~~~GGSSgGsaaaVA  167 (575)
                      +.+.+  .++.+||++|+|||+|||||+||||||||+++     .+|.|++||+|+||||+   +|+|||||||||||||
T Consensus       104 ~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pGGSSgGsAaaVA  181 (491)
T PRK06828        104 IALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVA  181 (491)
T ss_pred             HHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCCcCchHHHHHHH
Confidence            99875  67889999999999999999999999999974     58899999999999999   6899999999999999


Q ss_pred             hcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC------
Q 008170          168 AQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE------  241 (575)
Q Consensus       168 ag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~------  241 (575)
                      +|+++++||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+      
T Consensus       182 ag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~  261 (491)
T PRK06828        182 ANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTGVDEKDVVTHKS  261 (491)
T ss_pred             cCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhCCCccCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999987644211      


Q ss_pred             ---------------cccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCC--CccccccchhhccCcchHHhhhc
Q 008170          242 ---------------PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN--PEHMNVGQYIASNVPSLKGLRAQ  304 (575)
Q Consensus       242 ---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~--~~~~~~~~~v~~~~p~l~~~~~~  304 (575)
                                     ...+.++++..+........++++.++++++++.|+..+.  ++..+        +|.+..... 
T Consensus       262 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~--------~p~~~~~~~-  332 (491)
T PRK06828        262 EGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGATVVEDID--------IPSFHREWS-  332 (491)
T ss_pred             CcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCCEEEeccc--------CccchhHHH-
Confidence                           0123455553221100011357889999999999874332  11111        122111000 


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHhh----hhh---hhHHHHH------HHcCCCCCHHHHH-HHHHHhcCCHHHHHHHHHH
Q 008170          305 STSPENGTATLKALSSVMLSLQRY----EFK---TIYEEWV------KSAKPRLGYNVFE-RVLEAINTTQDNIKILYKV  370 (575)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~l~~~----e~~---~~~~~~~------~~~~~~l~~~~~~-~l~~~~~~s~~~~~~a~~~  370 (575)
                               ......+....+..+    ...   ....+.+      ......+++.+.. +++.+..++..+|.++++.
T Consensus       333 ---------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~~a~~~  403 (491)
T PRK06828        333 ---------WGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLRNPEYLNARLE  403 (491)
T ss_pred             ---------HHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCChHHHHHHHHH
Confidence                     000000110000000    000   0001111      1122356775444 4666777889999999888


Q ss_pred             HHHH--HHHHHHHhCC--CCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccccccccc-CCCCccccc
Q 008170          371 RNEM--RAALQRLLKD--DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISF  445 (575)
Q Consensus       371 r~~~--~~~~~~~~~~--~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqi  445 (575)
                      |..+  ++.++++|++  +|+||+||++..                      .++|++|+|++|||+|+. +|||+||||
T Consensus       404 r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP~G~~~~GlPvGlQl  461 (491)
T PRK06828        404 DIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIPAGYMEGGRPFGITL  461 (491)
T ss_pred             HHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEeecCCCCCCcCeEEEE
Confidence            8775  4799999984  899999998753                      234699999999999987 899999999


Q ss_pred             ccccCCchhHHhHHHHHHHH
Q 008170          446 ITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       446 vg~~~~d~~ll~~a~~~~~~  465 (575)
                      +|++|+|..||+++.++|+.
T Consensus       462 ig~~~~D~~LL~~A~a~E~~  481 (491)
T PRK06828        462 ASTAFSEGTLIKLAYAFEQA  481 (491)
T ss_pred             ECCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999885

>PRK11910 amidase; Provisional

Probab=100.00  E-value=9.8e-80  Score=650.40  Aligned_cols=391  Identities=24%  Similarity=0.285  Sum_probs=296.4

Q ss_pred             HHHHhh-----chhHHHHHHHHhhcccccCCC---CcCcEEeeccCCCCCCCCC-----CCCCCCCCCceEEeecccccC
Q 008170           21 IGVSVV-----GFVVLAETLRRRRNPKLNGRV---DFGAFLERFELIPFPQPPP-----PAARQPLAGLKFAIKDVFDVK   87 (575)
Q Consensus        21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~a~~-----~~~~gpL~Gvpi~vKD~~~~~   87 (575)
                      ++.+|+     +.+|++|+++.+++||.++|+   .+|||++..++ ++++|+.     ...+||||||||+|||||+++
T Consensus       166 ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~VKDni~t~  244 (615)
T PRK11910        166 DVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLLKDNIGTK  244 (615)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEEEcCcccC
Confidence            455555     339999999999999999997   79999998875 3443331     123589999999999999999


Q ss_pred             CccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeeccccccccc-----CCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008170           88 GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMPSHIPGGSSSGS  162 (575)
Q Consensus        88 G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~-----~~~~n~~~G~~~NP~~~~~~~GGSSgGs  162 (575)
                      |++||+||.+|.+  .++.+||++|+|||+|||||+|||||+||+++     .+++|++||+|+||||++|+||||||||
T Consensus       245 G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~pGGSSsGS  322 (615)
T PRK11910        245 ELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGS  322 (615)
T ss_pred             CCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchH
Confidence            9999999999975  67889999999999999999999999999976     3578899999999999999999999999


Q ss_pred             HHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC-
Q 008170          163 AVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE-  241 (575)
Q Consensus       163 aaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-  241 (575)
                      |||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+|.|++.+++++.+.+..+ 
T Consensus       323 AAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~g~~~~~~  402 (615)
T PRK11910        323 ATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTSNPP  402 (615)
T ss_pred             HHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhcCCCCcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988654321 


Q ss_pred             ----cccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCC--CccccccchhhccCcchHHhhhccCCCCCchhHH
Q 008170          242 ----PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN--PEHMNVGQYIASNVPSLKGLRAQSTSPENGTATL  315 (575)
Q Consensus       242 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~--~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~  315 (575)
                          ...+.|++++.+.      .++.+..+++++++.|+..+.  ++..        .+|.+...              
T Consensus       403 l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~--------~~p~~~~~--------------  454 (615)
T PRK11910        403 LSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGI--------AVGEFEQK--------------  454 (615)
T ss_pred             cCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCC--------CCccHHHH--------------
Confidence                1234566654331      235677788888888764332  1111        12222111              


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHc-----------------C---CCCCHHHHHHHHHHh-cCCHHHH-HHHHHHHHH
Q 008170          316 KALSSVMLSLQRYEFKTIYEEWVKSA-----------------K---PRLGYNVFERVLEAI-NTTQDNI-KILYKVRNE  373 (575)
Q Consensus       316 ~~~~~~~~~l~~~e~~~~~~~~~~~~-----------------~---~~l~~~~~~~l~~~~-~~s~~~~-~~a~~~r~~  373 (575)
                         ...+..+...|+...+..|++..                 .   ..+++.  .++..+. ..+.+++ ..+++.|+.
T Consensus       455 ---~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~--~~~~~~~~~~~~~~~~~~~~~~~~~  529 (615)
T PRK11910        455 ---DTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQS--ELVKSQQSTITKQQADNLASNLIQS  529 (615)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHH--HHHhhhccCCCHHHHHHHHHHHHHH
Confidence               01111222234444444443211                 1   223333  1122122 1343332 235667777


Q ss_pred             HHHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccccccccc--CCCCccccccccc
Q 008170          374 MRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY--NEHPISISFITYH  449 (575)
Q Consensus       374 ~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~--~GlPvGlqivg~~  449 (575)
                      +++.++++|+  ++|+||+|+....                    ....++++|+|+||||+|+.  +|||+||||+|++
T Consensus       530 ~~~~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~  589 (615)
T PRK11910        530 SQNELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITAR  589 (615)
T ss_pred             HHHHHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCC
Confidence            8888999996  7999999973210                    01223599999999999987  4999999999999


Q ss_pred             CCchhHHhHHHHHHHHhh
Q 008170          450 GGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       450 ~~d~~ll~~a~~~~~~~~  467 (575)
                      |+|..||++++++|+...
T Consensus       590 ~sE~~LL~~A~a~Eq~t~  607 (615)
T PRK11910        590 NSDKILLNMGYAYEQQSK  607 (615)
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            999999999999998654

>PRK06707 amidase; Provisional

Probab=100.00  E-value=2.6e-78  Score=642.58  Aligned_cols=382  Identities=22%  Similarity=0.278  Sum_probs=291.4

Q ss_pred             chhHHHHHHHHhhcccccCC---CCcCcEEeeccCCCCCCCC------CCCCCCCCCCceEEeeccccc-CCccccCCCh
Q 008170           27 GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP------PPAARQPLAGLKFAIKDVFDV-KGYVTGFGSP   96 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~a~------~~~~~gpL~Gvpi~vKD~~~~-~G~~tt~Gs~   96 (575)
                      +.+|++|+++.+++||.+.|   +.+|||++..++ ++++|+      .....+|||||||+|||||++ +|++||+||.
T Consensus        83 g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD~i~~~~g~~TtaGs~  161 (536)
T PRK06707         83 GKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKDNVQTAKVMPTSAGTY  161 (536)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEecccccCCCCccCcccH
Confidence            44999999999999999998   579999998765 444332      112358999999999999999 9999999999


Q ss_pred             hhhccCCCCCCchHHHHHHHHCCCeEEeeccccccccc-----CCCCCCCCCCCCCCCCC-CCCCCCCChHHHHHHHhcC
Q 008170           97 DWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITGENKHYGTPVNPQMP-SHIPGGSSSGSAVAVAAQL  170 (575)
Q Consensus        97 ~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~-----~~~~n~~~G~~~NP~~~-~~~~GGSSgGsaaaVAag~  170 (575)
                      .+.+  .++.+||++|+|||+|||||+|||||+||++.     .+|+|++||+|+||||+ .++|||||||||+|||+|+
T Consensus       162 ~l~~--~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~pGGSSsGSAaAVAag~  239 (536)
T PRK06707        162 VLKD--WIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADF  239 (536)
T ss_pred             hhcc--CCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCchHHHHHhCCC
Confidence            9975  56789999999999999999999999999953     57889999999999998 6899999999999999999


Q ss_pred             CceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc--------
Q 008170          171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--------  242 (575)
Q Consensus       171 ~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--------  242 (575)
                      +++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+|.|++.+++++.+.+..+.        
T Consensus       240 ~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~g~d~~d~~~~~~~~~  319 (536)
T PRK06707        240 APLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYDEKDVMTEKVKDK  319 (536)
T ss_pred             CceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHcCCCCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999886543211        


Q ss_pred             -------------ccCceEEeccchhhhcCCCchHHHHH-HHHHHHHHhCCC--CCccccccchhhccCcchHHhhhccC
Q 008170          243 -------------RRARRLIFADDIFQLSKVPKLKTIHV-ISKAIESLSGYQ--NPEHMNVGQYIASNVPSLKGLRAQST  306 (575)
Q Consensus       243 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~a~~~l~g~~--~~~~~~~~~~v~~~~p~l~~~~~~~~  306 (575)
                                   ..+.|+++..+..     ..+++.++ ++++++.|...+  +++.+        .+|....      
T Consensus       320 ~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~--------~l~~~~~------  380 (536)
T PRK06707        320 ERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYI--------QLNNGGV------  380 (536)
T ss_pred             CCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEecc--------CCchhhH------
Confidence                         1234555543321     23455555 477777776333  21101        1121000      


Q ss_pred             CCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCC----------CC-CHHHHHHHHHHhcC---------CHHH-HH
Q 008170          307 SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKP----------RL-GYNVFERVLEAINT---------TQDN-IK  365 (575)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~----------~l-~~~~~~~l~~~~~~---------s~~~-~~  365 (575)
                            ..        ..+..+|+...+..|+.....          .+ .+.++.++..+..+         +.++ +.
T Consensus       381 ------~~--------~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  446 (536)
T PRK06707        381 ------DN--------LQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITKDEFEK  446 (536)
T ss_pred             ------HH--------HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhcccccHHHHH
Confidence                  00        001112333333333211100          02 24455555444322         1223 34


Q ss_pred             HHHHHHHHHHHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccccccccc-CCCCcc
Q 008170          366 ILYKVRNEMRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPIS  442 (575)
Q Consensus       366 ~a~~~r~~~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvG  442 (575)
                      .+++.|+.+++.++++|+  ++|+||+|..                      ..|.++|++|+|+||||+|+. +|+|+|
T Consensus       447 ~~~~~r~~~~~~~~~~~~~~~~Dall~p~~----------------------~~t~~an~aG~PaitvP~G~~~~GlP~G  504 (536)
T PRK06707        447 VVQTSQENAKKELDRYLVEKGLDALVMINN----------------------EEVLLSAVAGYPELAVPAGYDNNGEPVG  504 (536)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCEEEecCC----------------------CcchhhHhcCCCeEEEecccCCCCCCeE
Confidence            456778888999999998  8999999731                      025678999999999999987 899999


Q ss_pred             cccccccCCchhHHhHHHHHHHHh
Q 008170          443 ISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       443 lqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      |||+|++|+|..||++++++|+..
T Consensus       505 lqlig~~~~e~~LL~~A~~~E~~~  528 (536)
T PRK06707        505 AVFVGKQFGEKELFNIGYAYEQQS  528 (536)
T ss_pred             EEEECCCCChHHHHHHHHHHHHhC
Confidence            999999999999999999998854

>PRK06565 amidase; Validated

Probab=100.00  E-value=2.2e-75  Score=613.11  Aligned_cols=431  Identities=20%  Similarity=0.207  Sum_probs=298.5

Q ss_pred             chhHHHHHHHHhhcccccCC-----CCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCC
Q 008170           27 GFVVLAETLRRRRNPKLNGR-----VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFG   94 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~G   94 (575)
                      +.+|++|+++++++||.+.|     +.+|||+..+++ ++++|+       .+..+||||||||+|||||+++|++||+|
T Consensus        19 g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vKD~~~v~G~~TT~G   97 (566)
T PRK06565         19 GRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAKDSYLVKGLTAASG   97 (566)
T ss_pred             CCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEecccccCCCCcccc
Confidence            55999999999999999999     689999987654 444332       34457999999999999999999999999


Q ss_pred             ChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCC----CCCCCChHHHHHHHhcC
Q 008170           95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSH----IPGGSSSGSAVAVAAQL  170 (575)
Q Consensus        95 s~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~----~~GGSSgGsaaaVAag~  170 (575)
                      |+.|.+  .++.+||++|+|||+||||++||||||||+++.++ |.+||+|+||||+.|    +|||||||||++||+|+
T Consensus        98 s~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGGSSgGsAaAVAag~  174 (566)
T PRK06565         98 SPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASF  174 (566)
T ss_pred             cHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCCCCccHHHHHhCCC
Confidence            999975  57889999999999999999999999999998876 679999999999999    59999999999999999


Q ss_pred             CceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc--------
Q 008170          171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--------  242 (575)
Q Consensus       171 ~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--------  242 (575)
                      +++++|||||||||+||+||||||||||+|+||+.|++|+++++|++|||+|+++|++.+++++.+.+..+.        
T Consensus       175 ~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g~D~~d~~~~~~~~~  254 (566)
T PRK06565        175 SAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVADDPDTRGDLWRLQP  254 (566)
T ss_pred             CcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcCCCcccccchhhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999886432110        


Q ss_pred             ------------------------ccCceEEeccchhhhcC------------------CCchHHHHHHHHHHHHHhCCC
Q 008170          243 ------------------------RRARRLIFADDIFQLSK------------------VPKLKTIHVISKAIESLSGYQ  280 (575)
Q Consensus       243 ------------------------~~~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~a~~~l~g~~  280 (575)
                                              ..+.|++++..++....                  ..++++.+.++++++.|+..+
T Consensus       255 ~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~L~~~G  334 (566)
T PRK06565        255 WVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVIDLWEAARRALEAAG  334 (566)
T ss_pred             cccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHHHHHHHHHHHHHHCC
Confidence                                    12345666554331100                  013578999999999997444


Q ss_pred             C-Cccccccc--hhhccCcchHHhhhccCCCCCchhHHHHH---------HHHHHHHHhhh--hhhhHHHHHHH--cC--
Q 008170          281 N-PEHMNVGQ--YIASNVPSLKGLRAQSTSPENGTATLKAL---------SSVMLSLQRYE--FKTIYEEWVKS--AK--  342 (575)
Q Consensus       281 ~-~~~~~~~~--~v~~~~p~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~e--~~~~~~~~~~~--~~--  342 (575)
                      . |+++++..  .++...+....      ..+......+..         ...-..+....  -...+.+....  ..  
T Consensus       335 a~vv~v~~p~~~~~e~~~~~~~~------~~~~~~~~~~~~~~e~~~~~~~~~~~yL~~~~~~~~~sl~di~~~~~~~~~  408 (566)
T PRK06565        335 AEVIEVDFPLVSNCEGDRPGAPT------VFNRGLVSPEFLHDELWELSGWAFDDFLRANGDPKLNRLADVDGPQIFPHD  408 (566)
T ss_pred             CEEEEeecCCccccccccccccc------cccccccchhhhhccccchhHHHHHHHHHhcCCCCCCCHHHhhhhhcccCc
Confidence            3 22223221  01110000000      000000000000         00000010000  00011111110  00  


Q ss_pred             CCCCH----HHHH----HHH--HHhcCC---HHHHHHHHHHHHHHHH-HHHHHhC--CCCEEEecCCCCCCCcCCccccc
Q 008170          343 PRLGY----NVFE----RVL--EAINTT---QDNIKILYKVRNEMRA-ALQRLLK--DDKILVIPTVSDPPLKLNTKKTY  406 (575)
Q Consensus       343 ~~l~~----~~~~----~l~--~~~~~s---~~~~~~a~~~r~~~~~-~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~  406 (575)
                      +..-+    .+..    ..+  .....+   ..+|.+.++.++..++ .++++|+  +.|+||+|+.+..+|..++....
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~~~~~~~~~~~~~~  488 (566)
T PRK06565        409 PGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTVADVGPADADVNPA  488 (566)
T ss_pred             ccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCccccccccch
Confidence            00001    1100    011  001111   2234455555555554 6777876  56899999999998877654322


Q ss_pred             chhh--Hh-hhhcccccc-ccCCCCccccccccc--CCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          407 SAEF--HD-RTLVLSSIG-SMSGCCQVAIPIGKY--NEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       407 ~~~~--~~-~~~~~t~~~-nl~G~PaisvP~G~~--~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      ....  ++ .+...+..+ +++|+|+||||+|+.  .|||+||+|+|++|+|..||++|.++|+...
T Consensus       489 ~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~  555 (566)
T PRK06565        489 SADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS  555 (566)
T ss_pred             hhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence            1111  11 112334444 899999999999986  7999999999999999999999999998554

>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.1e-71  Score=561.60  Aligned_cols=414  Identities=29%  Similarity=0.396  Sum_probs=297.4

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCC-------CCCCCCCCCCCceEEeecccccCCccc-cCCChhh
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQP-------PPPAARQPLAGLKFAIKDVFDVKGYVT-GFGSPDW   98 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a-------~~~~~~gpL~Gvpi~vKD~~~~~G~~t-t~Gs~~~   98 (575)
                      +.+++.++++.+++++.+.++..+.+....++. +.++       +.+...+||+|+||+|||||+++|++| ||+|..+
T Consensus        30 ~~l~~~~~ie~~l~~~~~~~~~~~~i~~~~~~~-~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l  108 (506)
T KOG1211|consen   30 GLLTSKRIIESYLERINKWKPLNAKITVINEEA-LKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWML  108 (506)
T ss_pred             cccchHHHHHHHHHHHhhcccccceeeeccHHH-HHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhhhh
Confidence            458899999999999999888777776665432 2222       244678999999999999999999999 7777776


Q ss_pred             hccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccC
Q 008170           99 KRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTD  178 (575)
Q Consensus        99 ~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtD  178 (575)
                      .  +..++.||++|++||++||+|+|||||+||+|+..++|.+||+|+|||++.+.|||||||||+|||++++++|+|||
T Consensus       109 ~--~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtD  186 (506)
T KOG1211|consen  109 E--HYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTD  186 (506)
T ss_pred             c--cCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhcccc
Confidence            5  36788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------
Q 008170          179 TIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------  242 (575)
Q Consensus       179 tgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------  242 (575)
                      ||||+|+||++|||+|||||+|++|+.|++|++.|+|++|||||++.|...+..++.+.+..+.                
T Consensus       187 TgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~  266 (506)
T KOG1211|consen  187 TGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELI  266 (506)
T ss_pred             CCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhcccchhHHHhhhhcCCCccCcccccCCcccccchhhc
Confidence            9999999999999999999999999999999999999999999999999999888776543221                


Q ss_pred             ----ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHh--CCCCCccccccchhhccCcchHHhhhccCCCCCchhHHH
Q 008170          243 ----RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLS--GYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLK  316 (575)
Q Consensus       243 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~  316 (575)
                          ..+.+++++..+....  ....+...+++..++|.  +..+ ...        .+|........+.        ..
T Consensus       267 ~~~~l~~~r~GIp~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~-~~~--------~lp~~~~~~~~~~--------~~  327 (506)
T KOG1211|consen  267 GSMDLSGLRIGIPKERLVQG--LSSGVLSLWEELADLLGSLGAKV-NEV--------SLPTTINGLCGYS--------LS  327 (506)
T ss_pred             ccccccccccCceeeccccc--ccHHHHHHHHHHHHHhhcccccc-eee--------ecchhhhcccccc--------cc
Confidence                1122344444433211  12456666666665554  2221 111        2233221111100        00


Q ss_pred             HHHHHHHHHHhhh---------hhhhHHHHHHHcC-CCCCHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHH--
Q 008170          317 ALSSVMLSLQRYE---------FKTIYEEWVKSAK-PRLGYNVFERVLEAI-----NTTQDNIKILYKVRNEMRAALQ--  379 (575)
Q Consensus       317 ~~~~~~~~l~~~e---------~~~~~~~~~~~~~-~~l~~~~~~~l~~~~-----~~s~~~~~~a~~~r~~~~~~~~--  379 (575)
                      ...++...+.++.         +....+++++..+ ..++.++..++..+.     ......+.++++.|+.....+.  
T Consensus       328 s~~ea~s~laryd~~~~~~r~~~~~~~~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~~~~~~  407 (506)
T KOG1211|consen  328 SASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQEDFNRR  407 (506)
T ss_pred             chhhhhhhHHHHHHHHhhcchhhhhccceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHHhhhhc
Confidence            0011112222221         1112222222111 123344555544332     2233445677888888887777  


Q ss_pred             -HHhCCCCEEEecCCCCCCCcCCcccc-cchhhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhHH
Q 008170          380 -RLLKDDKILVIPTVSDPPLKLNTKKT-YSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFLL  456 (575)
Q Consensus       380 -~~~~~~DvLl~Pt~~~~ap~~~~~~~-~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~ll  456 (575)
                       ..++++|+|++||.|.  +....... ...........++.++|++|+|+|+||+|+. +|+|+|+|++|..++|..++
T Consensus       408 ~~~~~~vD~l~~pt~~~--~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~e~~~~  485 (506)
T KOG1211|consen  408 KAALEGVDYLVTPTAPP--PLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLI  485 (506)
T ss_pred             ccccccCCeeeccCCCC--cchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCceEEEeecccccchHHH
Confidence             6888999999999433  33222111 1111111223579999999999999999998 99999999999999999999


Q ss_pred             hHHHHHHH
Q 008170          457 DTVLDLYD  464 (575)
Q Consensus       457 ~~a~~~~~  464 (575)
                      .++.+++.
T Consensus       486 ~l~~~~~~  493 (506)
T KOG1211|consen  486 DLALAIGQ  493 (506)
T ss_pred             HHHHhhcc
Confidence            99988766

>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-65  Score=527.27  Aligned_cols=428  Identities=20%  Similarity=0.258  Sum_probs=301.6

Q ss_pred             HHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCC-------CCCCCCCCCceEEeeccccc
Q 008170           19 VVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPP-------PAARQPLAGLKFAIKDVFDV   86 (575)
Q Consensus        19 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~-------~~~~gpL~Gvpi~vKD~~~~   86 (575)
                      ..|+++|++.     ++++|++++|++|+.++|+.+||+++..++++..+++.       ...++||+||||+|||+|.+
T Consensus        54 ~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~~v  133 (560)
T KOG1212|consen   54 KLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESISV  133 (560)
T ss_pred             hcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhheee
Confidence            3389999855     99999999999999999999999999988877665542       12568999999999999999


Q ss_pred             CCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008170           87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV  166 (575)
Q Consensus        87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV  166 (575)
                      +|+.+|+|.....  ..++++|+.+|+.|+++|||++.+||.||.+|+..+.|+.||+|.||||.+|||||||||+||++
T Consensus       134 kg~d~T~G~~~~~--~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaALi  211 (560)
T KOG1212|consen  134 KGYDSTAGLLART--NQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAALL  211 (560)
T ss_pred             cCccccchhhhcc--CCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHHHH
Confidence            9999999987654  36889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCC----CCccccccccCHHHHHHHHHHHccCCCCCc
Q 008170          167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQ----SLDTVGLLARNASILHRVGHVLLQLNAVEP  242 (575)
Q Consensus       167 Aag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~  242 (575)
                      ++|.++||||||+||||||||+|||++|+|||.+|+|..|+.|..+    .+-.+|||+|+++|+..++..+.+.+....
T Consensus       212 gaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~~~~  291 (560)
T KOG1212|consen  212 GAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSGPKL  291 (560)
T ss_pred             hCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCccccc
Confidence            9999999999999999999999999999999999999999887644    345789999999999998887776431111


Q ss_pred             c-----------------cCceEEec-cchhhhcCCCchHHHHHHHHHHHHHh--CCCCCccccccchhhccCcchHHhh
Q 008170          243 R-----------------RARRLIFA-DDIFQLSKVPKLKTIHVISKAIESLS--GYQNPEHMNVGQYIASNVPSLKGLR  302 (575)
Q Consensus       243 ~-----------------~~~~l~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~--g~~~~~~~~~~~~v~~~~p~l~~~~  302 (575)
                      .                 ++.++.+. .|.   ...+.+.+.+++....+.++  |+.+ +..        .+|.+++..
T Consensus       292 ~~p~~~p~~~~~~~y~~~~~~~ig~~~~dg---~~~~~pa~~RAv~~~~~~l~~~g~~~-~~f--------~~~~~~~~~  359 (560)
T KOG1212|consen  292 LDPYPVPVKFMEVFYKSSDKLVIGYYVDDG---FFDPSPAMQRAVQETIDLLEKAGHEV-VPF--------DLPDLKHVA  359 (560)
T ss_pred             cCCCCCCchhhhhhhhccCCccceEEecCC---CCCcCHHHHHHHHHHHHHHHhcCcce-eEe--------cCCcchHHH
Confidence            1                 11122221 121   12345677777777766665  3332 111        223332211


Q ss_pred             hccCCCCCchhHHHHHHHHHHHHHh----hh---hhhhHHHHHHHcCCCCCHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 008170          303 AQSTSPENGTATLKALSSVMLSLQR----YE---FKTIYEEWVKSAKPRLGYNVFE--RVLEAINTTQDNIKILYKVRNE  373 (575)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~l~~----~e---~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~~s~~~~~~a~~~r~~  373 (575)
                      +.+....  ......+.+.......    ..   +..-...++...   +.....-  .+.........+..+.+..++.
T Consensus       360 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---l~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~  434 (560)
T KOG1212|consen  360 DMFFRVM--PDDGDYISEMYLLDIGDPTLNLFVKFVELPKVFLGRS---LHSYIVLPFCIMDAKNSDTAELRQNYEDIES  434 (560)
T ss_pred             HHHHHHc--ccccchhhHHhhcccCccccchheeeeeccHHHHhhh---hhhhHhHHHHHHhhcccchHHHHHHHHHHHH
Confidence            1110000  0000000000000000    00   000000000000   0000000  1111222233344444445555


Q ss_pred             HHHHHHH--HhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccc----------------
Q 008170          374 MRAALQR--LLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGK----------------  435 (575)
Q Consensus       374 ~~~~~~~--~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~----------------  435 (575)
                      ++.++..  ...+.||||+|+.|++||+|+....     ....+.||.+||++|+||.+||++.                
T Consensus       435 yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~-----~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~~D~  509 (560)
T KOG1212|consen  435 YRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLL-----LVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPMNDK  509 (560)
T ss_pred             HHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchh-----hccchhHHHHHHhccCCcccccccccchhhhcccccccccH
Confidence            5544443  4568999999999999999985321     1123578999999999977777652                


Q ss_pred             ----------c-CCCCcccccccccCCchhHHhHHHHHHHHhhhhh
Q 008170          436 ----------Y-NEHPISISFITYHGGDKFLLDTVLDLYDSLQEQV  470 (575)
Q Consensus       436 ----------~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~~~a  470 (575)
                                . .|||+|||+|+.+++|+.+|++++.+|+.+..+.
T Consensus       510 ~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg~~  555 (560)
T KOG1212|consen  510 WATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGGWV  555 (560)
T ss_pred             HHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCCcc
Confidence                      2 6899999999999999999999999999887653

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.50  E-value=5.4e-14  Score=133.90  Aligned_cols=91  Identities=37%  Similarity=0.575  Sum_probs=82.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH---
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV---  560 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~---  560 (575)
                      ++...++.++++||.+++.++|++|+.+|++||+++|+++..|+|||.+|.++|+|+.|++||+.+|++||.+.+++   
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999988654   


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      |.++.++|+|..|+
T Consensus       156 G~A~~~~gk~~~A~  169 (304)
T KOG0553|consen  156 GLAYLALGKYEEAI  169 (304)
T ss_pred             HHHHHccCcHHHHH
Confidence            55555667777765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.30  E-value=8.1e-12  Score=96.35  Aligned_cols=67  Identities=31%  Similarity=0.550  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCc
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDK  554 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l~P  554 (575)
                      ++..|.++|..++++|+|++|+..|+++|+++|+++.+|+++|.+|.+++ ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            47899999999999999999999999999999999999999999999999 79999999999999998

...

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=2.2e-11  Score=122.30  Aligned_cols=89  Identities=31%  Similarity=0.554  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~  562 (575)
                      .+.+..++++||.+|++|+|++||.+|++||+++|+.+..|.||+.||..+|+|++.++||.++|+++|++.+   +++.
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~  191 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS  191 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            4568889999999999999999999999999999999999999999999999999999999999999999984   5666


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      .+..+|++..|+
T Consensus       192 A~E~lg~~~eal  203 (606)
T KOG0547|consen  192 AHEQLGKFDEAL  203 (606)
T ss_pred             HHHhhccHHHHH
Confidence            778888888876

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=7.9e-11  Score=120.04  Aligned_cols=90  Identities=40%  Similarity=0.517  Sum_probs=83.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      +|+.+...+++||.+|+.|+|..|+..|++||+.+|+++.+|.|||.||.+++++..|++||+++++++|++.   .+.|
T Consensus       354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg  433 (539)
T KOG0548|consen  354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG  433 (539)
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence            4677888999999999999999999999999999999999999999999999999999999999999999988   3567


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..+.+|..|+
T Consensus       434 ~al~~mk~ydkAl  446 (539)
T KOG0548|consen  434 AALRAMKEYDKAL  446 (539)
T ss_pred             HHHHHHHHHHHHH
Confidence            7888888988775

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=1.6e-09  Score=97.09  Aligned_cols=89  Identities=34%  Similarity=0.480  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA--  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~--  558 (575)
                      ...+..++..||.+|+.|+|++|...|+.||++.|..     ..+|.|||.|++++++++.||.+|.++|+|+|.+.+  
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            5678899999999999999999999999999999876     578999999999999999999999999999998874  


Q ss_pred             -HHHHHHHHHHHhhhhh
Q 008170          559 -RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 -~~~~~~~~l~~~~~~i  574 (575)
                       +++.++..+-+|.-||
T Consensus       172 ~RRAeayek~ek~eeal  188 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEAL  188 (271)
T ss_pred             HHHHHHHHhhhhHHHHH
Confidence             4455666666665554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.01  E-value=1.3e-09  Score=82.91  Aligned_cols=65  Identities=12%  Similarity=0.225  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +++|..++++|+|++|+..|+++++.+|+++.+++.+|.++.++|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.01  E-value=3e-09  Score=94.83  Aligned_cols=82  Identities=12%  Similarity=0.067  Sum_probs=73.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVD  564 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~  564 (575)
                      +|.....|.++|.++.+.|+|++|+..|+++++++|+++.+++++|.|+..+|++++|+..|+++++++|+++..+....
T Consensus        54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            36678999999999999999999999999999999999999999999999999999999999999999999885444444


Q ss_pred             HH
Q 008170          565 CS  566 (575)
Q Consensus       565 ~~  566 (575)
                      ..
T Consensus       134 ~~  135 (144)
T PRK15359        134 NA  135 (144)
T ss_pred             HH
Confidence            33

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.3e-09  Score=107.87  Aligned_cols=91  Identities=27%  Similarity=0.449  Sum_probs=82.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--  557 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--  557 (575)
                      ..++..+.++++||.+|++|+|..|.++|+++|.++|++    +.+|.|||.++.++|+..+|+.||+.++++|+.+.  
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika  323 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA  323 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence            467889999999999999999999999999999999986    78899999999999999999999999999999877  


Q ss_pred             -HHHHHHHHHHHHhhhhh
Q 008170          558 -ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -~~~~~~~~~l~~~~~~i  574 (575)
                       ..++.++..+++|-.|+
T Consensus       324 ll~ra~c~l~le~~e~AV  341 (486)
T KOG0550|consen  324 LLRRANCHLALEKWEEAV  341 (486)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence             46788888888886654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.95  E-value=3.8e-09  Score=94.17  Aligned_cols=83  Identities=17%  Similarity=0.059  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHH
Q 008170          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSML  568 (575)
Q Consensus       492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~  568 (575)
                      +..+|..+++.|+|++|+..|++++.++|++..+|+++|.++.++|++++|+..|+++++++|+++   ..+|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            667899999999999999999999999999999999999999999999999999999999999987   56777777778


Q ss_pred             Hhhhhh
Q 008170          569 IYLLCI  574 (575)
Q Consensus       569 ~~~~~i  574 (575)
                      ++..|+
T Consensus       107 ~~~eAi  112 (144)
T PRK15359        107 EPGLAR  112 (144)
T ss_pred             CHHHHH
Confidence            887765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.93  E-value=8.2e-09  Score=90.88  Aligned_cols=88  Identities=7%  Similarity=-0.037  Sum_probs=72.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      ++..+.++..|..+++.|++++|...|+-...++|.++..|+|+|.|+..+|+|++|+..|.+++.++|+++   ...|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            567788888888888888888888888888888888888888888888888888888888888888888887   45666


Q ss_pred             HHHHHHHhhhh
Q 008170          563 VDCSMLIYLLC  573 (575)
Q Consensus       563 ~~~~l~~~~~~  573 (575)
                      ++..+|+...|
T Consensus       112 c~L~lG~~~~A  122 (157)
T PRK15363        112 CYLACDNVCYA  122 (157)
T ss_pred             HHHHcCCHHHH
Confidence            66666665544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.91  E-value=2.2e-09  Score=103.54  Aligned_cols=70  Identities=41%  Similarity=0.619  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR  559 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~  559 (575)
                      ..++++||.||++|.|++||+||++++..+|.++..+.||+.+|+++++|..|..||+.|+.||-.+.++
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA  167 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA  167 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence            3488999999999999999999999999999999999999999999999999999999999999876643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.88  E-value=1e-08  Score=105.65  Aligned_cols=73  Identities=25%  Similarity=0.289  Sum_probs=40.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      |.....|.++|.++++.|+|++|+..++++++++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..
T Consensus        33 P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  105 (356)
T PLN03088         33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR  105 (356)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            3344455555555555555555555555555555555555555555555555555555555555555555553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=4.9e-09  Score=107.17  Aligned_cols=86  Identities=38%  Similarity=0.513  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDC  565 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~  565 (575)
                      +..++++||.+|..|+|+.|+.+|++||.++|.+..+|.||+.+|.++++|++|++|..++++++|+|++   .+|..+.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999999994   5666677


Q ss_pred             HHHHhhhhh
Q 008170          566 SMLIYLLCI  574 (575)
Q Consensus       566 ~l~~~~~~i  574 (575)
                      .+|+|..|+
T Consensus        82 ~lg~~~eA~   90 (539)
T KOG0548|consen   82 GLGDYEEAI   90 (539)
T ss_pred             hcccHHHHH
Confidence            788988776

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.82  E-value=1.6e-08  Score=103.08  Aligned_cols=71  Identities=15%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~---~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ...+|+++..|.++|+.|++.|+|++|+..|+++|+++|++..+   |+|+|.||.++|++++|+.++++++++
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999999999865   999999999999999999999999998

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.82  E-value=3.1e-08  Score=99.62  Aligned_cols=72  Identities=18%  Similarity=0.171  Sum_probs=41.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |+.+..|.++|..+.+.|+|++|+..|+++++++|++..+|+++|.+++..|++++|+++++++++++|+++
T Consensus        95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189         95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            344555555555555555555555555555555555555555555555555555555555555555555554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=9.9e-09  Score=94.67  Aligned_cols=82  Identities=35%  Similarity=0.597  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDC  565 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~  565 (575)
                      ...+..++++||.+|...+|..|+.+|.+||.++|..+..|.||+.||+++++|+.+..||.++++++||..+.++.++.
T Consensus         7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen    7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999998876655554


Q ss_pred             HH
Q 008170          566 SM  567 (575)
Q Consensus       566 ~l  567 (575)
                      .+
T Consensus        87 ~~   88 (284)
T KOG4642|consen   87 WL   88 (284)
T ss_pred             HH
Confidence            43

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=3.8e-08  Score=95.00  Aligned_cols=89  Identities=31%  Similarity=0.422  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      .+.++-+++.||.||+.++|..|+.+|++.|+..-.+    +.+|+|||.|.+.+|+|..|+.||.++++++|.+.+++.
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~  157 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYI  157 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhh
Confidence            4579999999999999999999999999999885433    778999999999999999999999999999999986544


Q ss_pred             ---HHHHHHHHhhhhh
Q 008170          562 ---YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ---~~~~~l~~~~~~i  574 (575)
                         .+...+.+|..|+
T Consensus       158 R~Akc~~eLe~~~~a~  173 (390)
T KOG0551|consen  158 RGAKCLLELERFAEAV  173 (390)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence               4555566665554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.76  E-value=5.2e-08  Score=85.74  Aligned_cols=87  Identities=10%  Similarity=0.085  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      ++......+|..+++.|++++|++.|+++++.+|++..+++++|.++.+++++++|+..++++++++|++.   ..++.+
T Consensus        15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~   94 (135)
T TIGR02552        15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC   94 (135)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555555555555555555555443   233444


Q ss_pred             HHHHHHhhhh
Q 008170          564 DCSMLIYLLC  573 (575)
Q Consensus       564 ~~~l~~~~~~  573 (575)
                      +...+++..|
T Consensus        95 ~~~~g~~~~A  104 (135)
T TIGR02552        95 LLALGEPESA  104 (135)
T ss_pred             HHHcCCHHHH
Confidence            4444444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.74  E-value=5.5e-08  Score=91.50  Aligned_cols=89  Identities=21%  Similarity=0.221  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCcccH---HH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY-LELGC--FQQAEEDCSKTISLDKKVR---AR  559 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~-~~l~~--~~~Ai~~~~~al~l~P~~~---~~  559 (575)
                      |++.+.|..+|..+...|++++|+..|+++++++|+++.++.++|.++ ...|+  +++|+..++++++++|++.   ..
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~  149 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML  149 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence            677889999999999999999999999999999999999999999975 67777  5999999999999999888   45


Q ss_pred             HHHHHHHHHHhhhhh
Q 008170          560 VGYVDCSMLIYLLCI  574 (575)
Q Consensus       560 ~~~~~~~l~~~~~~i  574 (575)
                      ++..+...|+|..|+
T Consensus       150 LA~~~~~~g~~~~Ai  164 (198)
T PRK10370        150 LASDAFMQADYAQAI  164 (198)
T ss_pred             HHHHHHHcCCHHHHH
Confidence            666677778887776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.73  E-value=4.8e-08  Score=108.80  Aligned_cols=87  Identities=34%  Similarity=0.486  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      +.+..++++|+.+++.|+|++|+..|+++|+++|+ +..|.|+|.||.++++|++|+++|+++++++|++.   ..++.+
T Consensus       125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a  203 (615)
T TIGR00990       125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA  203 (615)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            45778999999999999999999999999999996 77999999999999999999999999999999987   466777


Q ss_pred             HHHHHHhhhhh
Q 008170          564 DCSMLIYLLCI  574 (575)
Q Consensus       564 ~~~l~~~~~~i  574 (575)
                      +..+++|..|+
T Consensus       204 ~~~lg~~~eA~  214 (615)
T TIGR00990       204 YDGLGKYADAL  214 (615)
T ss_pred             HHHcCCHHHHH
Confidence            78888887764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.72  E-value=7.4e-08  Score=74.91  Aligned_cols=63  Identities=17%  Similarity=0.357  Sum_probs=60.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       496 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      .+.|+++++|++|++.++++++++|+++.+++.+|.++.++|++++|+++++++++++|++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            467899999999999999999999999999999999999999999999999999999998875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=5.9e-08  Score=96.86  Aligned_cols=88  Identities=30%  Similarity=0.380  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---------------SATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---------------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~  551 (575)
                      +.+...++.||.+|+.|+|..|...|.+|+..=..               -..++.|++.||+|+++|.+|+..|+++|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            34556667777777777777777777777654211               134577777777777777777777777777


Q ss_pred             hCcccHH---HHHHHHHHHHHhhhhh
Q 008170          552 LDKKVRA---RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       552 l~P~~~~---~~~~~~~~l~~~~~~i  574 (575)
                      ++|+|.+   ++|+++..+++|..|+
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~  311 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLAR  311 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHH
Confidence            7777774   4445555566666654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=7.4e-08  Score=92.41  Aligned_cols=79  Identities=20%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      +|+++..|-+++-+|.+.|+|+.|++.+..||.+||.+..+|..+|.+|+.+|+|++|++.|+|+|+++|+|...+-.+
T Consensus       111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence            4778999999999999999999999999999999999999999999999999999999999999999999998433333

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.66  E-value=1.2e-07  Score=95.28  Aligned_cols=89  Identities=21%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      ...+..|+++|..+.+.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++.   ..+|.
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456888999999999999999999999999999999999999999999999999999999999999999988   45566


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++...++|..|+
T Consensus       141 ~l~~~g~~~eA~  152 (296)
T PRK11189        141 ALYYGGRYELAQ  152 (296)
T ss_pred             HHHHCCCHHHHH
Confidence            666667777765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.61  E-value=7.6e-08  Score=93.17  Aligned_cols=92  Identities=21%  Similarity=0.150  Sum_probs=84.8

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV  560 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~  560 (575)
                      .++.+.+.+.+.|+.++..|+|.+|+..|..|++.+|++..+++.||.+|+.+|+-..|+.|++++|++.|++.   ..+
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999987   467


Q ss_pred             HHHHHHHHHhhhhhC
Q 008170          561 GYVDCSMLIYLLCIV  575 (575)
Q Consensus       561 ~~~~~~l~~~~~~i~  575 (575)
                      |.+++-+|++..|.+
T Consensus       113 g~vllK~Gele~A~~  127 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEA  127 (504)
T ss_pred             chhhhhcccHHHHHH
Confidence            888888888877753

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.61  E-value=3e-07  Score=94.80  Aligned_cols=85  Identities=32%  Similarity=0.479  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCS  566 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~  566 (575)
                      ..++.+|+.+|..|+|++|++.|+++|+++|+++.+|++||.+|+++|++++|+.+++++++++|++.   ..+|.++..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999987   466777788


Q ss_pred             HHHhhhhh
Q 008170          567 MLIYLLCI  574 (575)
Q Consensus       567 l~~~~~~i  574 (575)
                      +|+|..|+
T Consensus        83 lg~~~eA~   90 (356)
T PLN03088         83 LEEYQTAK   90 (356)
T ss_pred             hCCHHHHH
Confidence            88888775

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.60  E-value=3.1e-07  Score=84.82  Aligned_cols=90  Identities=17%  Similarity=0.096  Sum_probs=81.6

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV  560 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~  560 (575)
                      .....+.+..++|..|+++|++..|...+++||+.||++..+|.-|+.+|.++|+.+.|.+.|++|++++|++.   .++
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            33456778899999999999999999999999999999999999999999999999999999999999999987   577


Q ss_pred             HHHHHHHHHhhhh
Q 008170          561 GYVDCSMLIYLLC  573 (575)
Q Consensus       561 ~~~~~~l~~~~~~  573 (575)
                      |..++..|+|..+
T Consensus       110 G~FLC~qg~~~eA  122 (250)
T COG3063         110 GAFLCAQGRPEEA  122 (250)
T ss_pred             hHHHHhCCChHHH
Confidence            8888887777655

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.60  E-value=3.7e-07  Score=80.49  Aligned_cols=69  Identities=14%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      +|.....|+++|.++-..|+|++||..|.+|+.++|+++..++|.|.|++++|+.++|.+.|+.++.+.
T Consensus        65 Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         65 DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            477899999999999999999999999999999999999999999999999999999999999999886

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.57  E-value=1.9e-07  Score=71.43  Aligned_cols=60  Identities=20%  Similarity=0.274  Sum_probs=56.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       499 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      ++++|+|++|++.|+++++.+|++..+++.++.||++.|++++|...+++++..+|++..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence            478999999999999999999999999999999999999999999999999999999764

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.55  E-value=2.1e-07  Score=96.45  Aligned_cols=89  Identities=15%  Similarity=0.121  Sum_probs=57.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~  561 (575)
                      +|.+++.+.|+||.+..+|.+++|...|.++++..|..+.+++|+|.+|.++|++++|+.+|+++|+++|....   ++|
T Consensus       350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG  429 (966)
T KOG4626|consen  350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG  429 (966)
T ss_pred             CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence            35566666777777777777777777777777777777777777777777777777777777777777776552   344


Q ss_pred             HHHHHHHHhhhh
Q 008170          562 YVDCSMLIYLLC  573 (575)
Q Consensus       562 ~~~~~l~~~~~~  573 (575)
                      ..+..+|+...|
T Consensus       430 nt~ke~g~v~~A  441 (966)
T KOG4626|consen  430 NTYKEMGDVSAA  441 (966)
T ss_pred             hHHHHhhhHHHH
Confidence            444444444433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.47  E-value=1.4e-06  Score=72.96  Aligned_cols=72  Identities=28%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      -+.+..+.-+|..+-..|+.+.|++.|.++|.+.|..+.+|+||++++.-+++.++|++|+++++++.-+..
T Consensus        40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t  111 (175)
T KOG4555|consen   40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT  111 (175)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence            456777888999999999999999999999999999999999999999999999999999999999965433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.1e-06  Score=87.97  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      ...+.|.+.++.+.++|.+|+...+++|+++|+|..++|.||.+++.+++|+.|+.||+++++++|+|..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka  326 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA  326 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence            3457899999999999999999999999999999999999999999999999999999999999999974

>PRK12370 invasion protein regulator; Provisional

Probab=98.45  E-value=7.2e-07  Score=97.83  Aligned_cols=89  Identities=13%  Similarity=0.010  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~  562 (575)
                      |+++..+..+|..+...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..++++++++|++..   .++.
T Consensus       335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~  414 (553)
T PRK12370        335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW  414 (553)
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            5678889999999999999999999999999999999999999999999999999999999999999998762   2333


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      .+...++|..|+
T Consensus       415 ~~~~~g~~eeA~  426 (553)
T PRK12370        415 ITYYHTGIDDAI  426 (553)
T ss_pred             HHHhccCHHHHH
Confidence            444456665553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.45  E-value=1.9e-06  Score=69.10  Aligned_cols=84  Identities=31%  Similarity=0.466  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSM  567 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l  567 (575)
                      .+.++|..++++|++++|+..++++++..|++..++++++.++...+++++|+..+++++++.|.+.   ..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999988776   3556666666


Q ss_pred             HHhhhhh
Q 008170          568 LIYLLCI  574 (575)
Q Consensus       568 ~~~~~~i  574 (575)
                      +++..|+
T Consensus        82 ~~~~~a~   88 (100)
T cd00189          82 GKYEEAL   88 (100)
T ss_pred             HhHHHHH
Confidence            7766553

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.44  E-value=9.2e-07  Score=83.43  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=75.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      ++++...+..+|...+++|+|.+|+..++++.+++|++..+|+.+|.+|.++|++++|...|.+++++.|+.+   .+++
T Consensus        96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg  175 (257)
T COG5010          96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG  175 (257)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence            4566777777999999999999999999999999999999999999999999999999999999999999887   4566


Q ss_pred             HHHHHHHHhhh
Q 008170          562 YVDCSMLIYLL  572 (575)
Q Consensus       562 ~~~~~l~~~~~  572 (575)
                      +.+...|++.-
T Consensus       176 ms~~L~gd~~~  186 (257)
T COG5010         176 MSLLLRGDLED  186 (257)
T ss_pred             HHHHHcCCHHH
Confidence            66665566544

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.44  E-value=1.3e-07  Score=96.13  Aligned_cols=87  Identities=34%  Similarity=0.458  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~  564 (575)
                      .+..++++++.+++.+.|+.|+..|++||+++|+++..+.||++++++.++|..|+.|+.++++++|.+.+   .+|...
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            36678899999999999999999999999999999999999999999999999999999999999998774   345556


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ..+++|+.|+
T Consensus        83 m~l~~~~~A~   92 (476)
T KOG0376|consen   83 MALGEFKKAL   92 (476)
T ss_pred             HhHHHHHHHH
Confidence            6667666654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.44  E-value=1.5e-06  Score=76.35  Aligned_cols=73  Identities=18%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      |.....+...|..++++|+|++|+..|+++++.+|++...++++|.++..+|++++|+..++++++++|++..
T Consensus        48 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        48 PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            4567899999999999999999999999999999999999999999999999999999999999999998874

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.43  E-value=1.5e-06  Score=74.15  Aligned_cols=69  Identities=14%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...++..|..+++.|+|++|+..|.+++..+|++   +.++++++.++.+++++++|+..++++++..|++.
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence            4455666666666666666666666666666553   45566666666666666666666666666666654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.43  E-value=7e-07  Score=70.39  Aligned_cols=68  Identities=19%  Similarity=0.345  Sum_probs=60.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      |..+..+.+.|..++.+|+|++|+..|++++++.       |..+.+++++|.++..+|++++|+..+++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5678899999999999999999999999999762       2236789999999999999999999999999863

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.41  E-value=2.9e-06  Score=77.82  Aligned_cols=82  Identities=13%  Similarity=0.079  Sum_probs=70.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA--  558 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~--  558 (575)
                      ...+.+..+...|..++.+|+|++|+..|++++.+.|+.   +.+++++|.++.++|++++|+..|+++++++|.+..  
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            345678899999999999999999999999999997763   568999999999999999999999999999998773  


Q ss_pred             -HHHHHHH
Q 008170          559 -RVGYVDC  565 (575)
Q Consensus       559 -~~~~~~~  565 (575)
                       .++.++.
T Consensus       110 ~~la~i~~  117 (168)
T CHL00033        110 NNMAVICH  117 (168)
T ss_pred             HHHHHHHH
Confidence             3444444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=1e-06  Score=91.24  Aligned_cols=112  Identities=9%  Similarity=0.079  Sum_probs=89.9

Q ss_pred             cCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008170          449 HGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN  528 (575)
Q Consensus       449 ~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~  528 (575)
                      .-+...+..+...+.+...+...              ..+++...-+|..|+-.|+|++|++||+.||+.+|++..+|+.
T Consensus       404 ~~~~~~l~~i~~~fLeaa~~~~~--------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNR  469 (579)
T KOG1125|consen  404 FLDSSHLAHIQELFLEAARQLPT--------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNR  469 (579)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCC--------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            33556677777666664443211              1346677789999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          529 RAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       529 ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      +|..+..-.+.++||..|.+||+|.|++.   .++|.....+|.|..|+
T Consensus       470 LGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  470 LGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             hhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence            99999999999999999999999999988   45566666677776654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.39  E-value=2.7e-06  Score=78.34  Aligned_cols=75  Identities=20%  Similarity=0.246  Sum_probs=68.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      .++..+..++++|..+.+.|+|++|+.+|++++++.|+.   ..++.++|.++.++|++++|+..++++++++|++..
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            457788899999999999999999999999999987754   578999999999999999999999999999998874

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.38  E-value=1.9e-06  Score=89.57  Aligned_cols=111  Identities=19%  Similarity=0.123  Sum_probs=86.3

Q ss_pred             cCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008170          449 HGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN  528 (575)
Q Consensus       449 ~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~  528 (575)
                      -+.++-++++|-..++...+               .+|.-.+++.|.+|++-..|+-.||.++|+++|.++|+++.+.+|
T Consensus       295 iYyeqG~ldlAI~~Ykral~---------------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N  359 (966)
T KOG4626|consen  295 IYYEQGLLDLAIDTYKRALE---------------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN  359 (966)
T ss_pred             EEeccccHHHHHHHHHHHHh---------------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence            34566677777665553322               135667788999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          529 RAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       529 ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      +|.+|.+++++++|...|.++++..|+..   .+++.++...|++..||
T Consensus       360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai  408 (966)
T KOG4626|consen  360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI  408 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence            99999999999999999999999999876   34555555555555443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.37  E-value=1.6e-06  Score=96.67  Aligned_cols=89  Identities=9%  Similarity=0.038  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |++...+..+|..++..|+|++|+..|+++++++|++...++++|.++.++|++++|+..++++++++|++.   ..+|.
T Consensus       396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~  475 (615)
T TIGR00990       396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE  475 (615)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            344566777777777777777777777777777777777777777777777777777777777777777665   34555


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+|+|..|+
T Consensus       476 ~~~~~g~~~~A~  487 (615)
T TIGR00990       476 LLLDQNKFDEAI  487 (615)
T ss_pred             HHHHccCHHHHH
Confidence            566666665554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=8.7e-07  Score=93.14  Aligned_cols=90  Identities=16%  Similarity=0.092  Sum_probs=84.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      ++.+-.+|+-.|.+|.++++|+.|.-+|++|++++|.+..+....|..+.++|+.++|+..+++|+.+||.++   ..++
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999999999999999988   5678


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..+++|..|+
T Consensus       565 ~il~~~~~~~eal  577 (638)
T KOG1126|consen  565 SILFSLGRYVEAL  577 (638)
T ss_pred             HHHHhhcchHHHH
Confidence            8888888888876

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.9e-06  Score=80.03  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=70.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHH
Q 008170          481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------NGTSATYYSNRAAAYLELGCFQQA  542 (575)
Q Consensus       481 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------------------~p~~~~~~~~ra~~~~~l~~~~~A  542 (575)
                      +-++..+....+.++||.+|++|+|++|..+|..||..                  +.....++.|.++|+++.++|.++
T Consensus       170 sddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yev  249 (329)
T KOG0545|consen  170 SDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEV  249 (329)
T ss_pred             CchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHH
Confidence            34455677788999999999999999999999999832                  223356799999999999999999


Q ss_pred             HHHHHHHHHhCcccHHHHHHHH
Q 008170          543 EEDCSKTISLDKKVRARVGYVD  564 (575)
Q Consensus       543 i~~~~~al~l~P~~~~~~~~~~  564 (575)
                      ++.|...|..+|.|.+++++..
T Consensus       250 leh~seiL~~~~~nvKA~frRa  271 (329)
T KOG0545|consen  250 LEHCSEILRHHPGNVKAYFRRA  271 (329)
T ss_pred             HHHHHHHHhcCCchHHHHHHHH
Confidence            9999999999999997665543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.34  E-value=2.5e-06  Score=76.94  Aligned_cols=72  Identities=31%  Similarity=0.408  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...+..|.++|-++++.+.++.||..+++||+++|.+-.++..||.+|.++.+|++|+.||++.++++|...
T Consensus       131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~  202 (271)
T KOG4234|consen  131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR  202 (271)
T ss_pred             HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence            456788999999999999999999999999999999999999999999999999999999999999999866

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.32  E-value=5.9e-06  Score=78.93  Aligned_cols=68  Identities=15%  Similarity=0.207  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      +..+.+.|..+++.|+|++|++.++++++.+|++..++..++.++..+|++++|++.++++++++|++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~   98 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN   98 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            44444555555555555555555555555555555555555555555555555555555555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.31  E-value=9.4e-07  Score=70.79  Aligned_cols=73  Identities=23%  Similarity=0.348  Sum_probs=52.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          501 KGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       501 ~~g~~~~Ai~~~~~al~~~p~--~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      .+|+|++|+..|+++++.+|.  +...++++|.||+++|+|++|+..+++ ++.++.+.   ..+++++..+++|..||
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            367788888888888888874  466777788888888888888888887 66666554   44577777777777775

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.26  E-value=1.7e-05  Score=76.98  Aligned_cols=74  Identities=19%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+...+..++++|..+++.|+|++|+..|+++++.+|+++   .+++++|.++.+++++++|+..++++++.+|++.
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            4466788999999999999999999999999999999875   6889999999999999999999999999999766

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.23  E-value=4.7e-06  Score=95.97  Aligned_cols=85  Identities=13%  Similarity=0.076  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC  565 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~  565 (575)
                      ...+.+.|..+.+.|++++|+..|.++++++|+++.+++++|.++.++|++++|+..|+++++++|++.   ..++.++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345566666666666666666666666666666666666666666666666666666666666666655   34455555


Q ss_pred             HHHHhhhh
Q 008170          566 SMLIYLLC  573 (575)
Q Consensus       566 ~l~~~~~~  573 (575)
                      .+|++..|
T Consensus       689 ~lGd~~eA  696 (987)
T PRK09782        689 RLDDMAAT  696 (987)
T ss_pred             HCCCHHHH
Confidence            55554444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.3e-05  Score=77.64  Aligned_cols=118  Identities=14%  Similarity=0.076  Sum_probs=94.5

Q ss_pred             CcccccccccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          440 PISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN  519 (575)
Q Consensus       440 PvGlqivg~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~  519 (575)
                      |+-.+..-++ ++..+-++...++.+++.                +|++++.|.-+|..|+++|++..|...|.+|+++.
T Consensus       124 r~~~~~a~~~-~~~~~~~l~a~Le~~L~~----------------nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~  186 (287)
T COG4235         124 RLADPLAQPP-AEQEMEALIARLETHLQQ----------------NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA  186 (287)
T ss_pred             hhhcccccCC-CcccHHHHHHHHHHHHHh----------------CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence            4444554444 445566666777776664                47889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHHH---HHHHHHhhhhh
Q 008170          520 GTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKVRARVGYV---DCSMLIYLLCI  574 (575)
Q Consensus       520 p~~~~~~~~ra~~~~~l~---~~~~Ai~~~~~al~l~P~~~~~~~~~---~~~l~~~~~~i  574 (575)
                      |+++.++...+.+++...   .-.++...+++++++||++...++++   +...|+|..|+
T Consensus       187 g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~  247 (287)
T COG4235         187 GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAA  247 (287)
T ss_pred             CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence            999999999999998764   46889999999999999999654444   45567787765

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.19  E-value=9.5e-06  Score=76.34  Aligned_cols=75  Identities=17%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          486 IDASELLKEKGNAA-FKGKQ--WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       486 ~~~a~~~~~~g~~~-~~~g~--~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      |++...+.+.|.++ ++.|+  +++|.+.++++++++|++..+++++|.+++++|+|++|+..++++++++|.+....
T Consensus       104 P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        104 GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            56788999999975 77787  59999999999999999999999999999999999999999999999999766433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=4.3e-06  Score=84.88  Aligned_cols=68  Identities=24%  Similarity=0.250  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      .|..++..|.++.+-++-...|++|.++||+++.+|+.||+.++-+++|++|+.||++++.|+|++..
T Consensus       362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~  429 (606)
T KOG0547|consen  362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY  429 (606)
T ss_pred             HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH
Confidence            37888888999999999999999999999999999999999999999999999999999999998874

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.18  E-value=5.9e-07  Score=87.45  Aligned_cols=87  Identities=23%  Similarity=0.353  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      +++...+-++..++..|+++.||+.|+.+|+++|..+.+|.+|+.++++++++..|++||+.+++++|+..   +.+++.
T Consensus       112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A  191 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA  191 (377)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence            44556677888899999999999999999999999999999999999999999999999999999999866   567777


Q ss_pred             HHHHHHhhhh
Q 008170          564 DCSMLIYLLC  573 (575)
Q Consensus       564 ~~~l~~~~~~  573 (575)
                      ...+++|.++
T Consensus       192 ~rllg~~e~a  201 (377)
T KOG1308|consen  192 ERLLGNWEEA  201 (377)
T ss_pred             HHHhhchHHH
Confidence            7777777654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.18  E-value=6.6e-06  Score=91.19  Aligned_cols=88  Identities=11%  Similarity=-0.076  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |++..++.+.++.+.+++++++|+..++++++.+|+++.+++++|.++.++|+|++|+..|++++..+|++.   ..++.
T Consensus       117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~  196 (694)
T PRK15179        117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ  196 (694)
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            667777788888888888888888888888888888888888888888888888888888888887777655   34555


Q ss_pred             HHHHHHHhhhh
Q 008170          563 VDCSMLIYLLC  573 (575)
Q Consensus       563 ~~~~l~~~~~~  573 (575)
                      ++..+|+...|
T Consensus       197 ~l~~~G~~~~A  207 (694)
T PRK15179        197 SLTRRGALWRA  207 (694)
T ss_pred             HHHHcCCHHHH
Confidence            55555555444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.16  E-value=1.1e-05  Score=93.00  Aligned_cols=73  Identities=11%  Similarity=-0.015  Sum_probs=70.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +|++...+.+.|..+.+.|++++|+..|+++++++|+++.+++++|.++.++|++++|+..|+++++++|++.
T Consensus       639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            4677889999999999999999999999999999999999999999999999999999999999999999886

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.15  E-value=8.4e-06  Score=90.37  Aligned_cols=91  Identities=3%  Similarity=-0.201  Sum_probs=84.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      .++.++.++++|....+.|+|++|...+..+++++|++..++.+++.++.+++++++|+..++++++.+|++.   ..++
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            4677899999999999999999999999999999999999999999999999999999999999999999998   4677


Q ss_pred             HHHHHHHHhhhhhC
Q 008170          562 YVDCSMLIYLLCIV  575 (575)
Q Consensus       562 ~~~~~l~~~~~~i~  575 (575)
                      .++..+|+|..|++
T Consensus       162 ~~l~~~g~~~~A~~  175 (694)
T PRK15179        162 KSWDEIGQSEQADA  175 (694)
T ss_pred             HHHHHhcchHHHHH
Confidence            78888888888763

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.14  E-value=2.6e-06  Score=89.67  Aligned_cols=89  Identities=16%  Similarity=0.196  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------------------CCHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG----------------------------------TSATYYSNRAA  531 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p----------------------------------~~~~~~~~ra~  531 (575)
                      +..++.|-..||++--|++++.||.+|++|+++||                                  ++..+||.+|.
T Consensus       418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~  497 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGT  497 (638)
T ss_pred             CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhh
Confidence            44456777777777777777777777777776654                                  45678999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          532 AYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       532 ~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      +|+|+++++.|.-.|++|++++|.+.   -..|..+..+++...||
T Consensus       498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL  543 (638)
T KOG1126|consen  498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL  543 (638)
T ss_pred             heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH
Confidence            99999999999999999999999877   34566666666666665

>PRK12370 invasion protein regulator; Provisional

Probab=98.14  E-value=7.6e-06  Score=89.78  Aligned_cols=89  Identities=8%  Similarity=-0.127  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          486 IDASELLKEKGNAAF---------KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~---------~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      |+.+..|...|.+++         ..+++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|++
T Consensus       292 P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~  371 (553)
T PRK12370        292 PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS  371 (553)
T ss_pred             CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            555777777777665         33558999999999999999999999999999999999999999999999999998


Q ss_pred             HH---HHHHHHHHHHHhhhhh
Q 008170          557 RA---RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       557 ~~---~~~~~~~~l~~~~~~i  574 (575)
                      ..   .++.++...|++..|+
T Consensus       372 ~~a~~~lg~~l~~~G~~~eAi  392 (553)
T PRK12370        372 ADIKYYYGWNLFMAGQLEEAL  392 (553)
T ss_pred             HHHHHHHHHHHHHCCCHHHHH
Confidence            84   4566666677777665

>PRK15331 chaperone protein SicA; Provisional

Probab=98.14  E-value=1.9e-05  Score=70.05  Aligned_cols=116  Identities=13%  Similarity=0.013  Sum_probs=91.0

Q ss_pred             chhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170          452 DKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA  531 (575)
Q Consensus       452 d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~  531 (575)
                      +..+-+++..+...+.+.++..      .-.+-..+..+..+..|-.++++|+|++|...|+-...++|.+...++.+|.
T Consensus         6 ~~~~~~~~~~i~~al~~G~tlk------~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa   79 (165)
T PRK15331          6 NVSEERVAEMIWDAVSEGATLK------DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAA   79 (165)
T ss_pred             hhhHHHHHHHHHHHHHCCCCHH------HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            3344455555555555432211      1123346788999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhh
Q 008170          532 AYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLC  573 (575)
Q Consensus       532 ~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~  573 (575)
                      |+..+++|++|+..|..+..++++++   ...|.++..+++...|
T Consensus        80 ~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         80 VCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence            99999999999999999999988777   5677777777776554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.12  E-value=1.4e-05  Score=68.17  Aligned_cols=86  Identities=13%  Similarity=0.057  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------AR  559 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------~~  559 (575)
                      .+.+++.|..++++|+|++|+..|.++++.+|++   ..+++++|.++.+.+++++|+..++++++.+|++.      ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578999999999999999999999999999876   67899999999999999999999999999998852      45


Q ss_pred             HHHHHHHHHHhhhhh
Q 008170          560 VGYVDCSMLIYLLCI  574 (575)
Q Consensus       560 ~~~~~~~l~~~~~~i  574 (575)
                      ++.++..++++..|+
T Consensus        82 ~~~~~~~~~~~~~A~   96 (119)
T TIGR02795        82 LGMSLQELGDKEKAK   96 (119)
T ss_pred             HHHHHHHhCChHHHH
Confidence            666776677766554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.11  E-value=1.1e-05  Score=74.71  Aligned_cols=71  Identities=20%  Similarity=0.275  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |++.+.+.|.|.-+..+|+|++|...|.+|+. +|   ..+..|.|.+.|.+++|+++.|.++++++|+++|+++
T Consensus       100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             CCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            44444555555555555555555555555553 22   2244555555555555555555555555555555554

>PLN02789 farnesyltranstransferase

Probab=98.10  E-value=2.3e-05  Score=79.18  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=50.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQW--NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY  562 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~--~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~  562 (575)
                      +|+....|..++..+.+.++.  ++++.+++++|+++|++..+|++|+.++.++++|++++++|+++|++||+|..++.+
T Consensus       102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~  181 (320)
T PLN02789        102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ  181 (320)
T ss_pred             CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH
Confidence            455556666666666655553  556666666666666666666666666666666666666666666666666644333


Q ss_pred             HH
Q 008170          563 VD  564 (575)
Q Consensus       563 ~~  564 (575)
                      .+
T Consensus       182 R~  183 (320)
T PLN02789        182 RY  183 (320)
T ss_pred             HH
Confidence            33

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.09  E-value=1.2e-05  Score=89.88  Aligned_cols=90  Identities=10%  Similarity=0.001  Sum_probs=59.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~  561 (575)
                      +|+....+.++|..++++|++++|+..|+++++++|+++.++.+++.++.++|++++|+..|+++++.+|++..   ..+
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a  359 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA  359 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            34556666677777777777777777777777777777777777777777777777777777777777776542   234


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++...|++..|+
T Consensus       360 ~al~~~G~~deA~  372 (656)
T PRK15174        360 AALLQAGKTSEAE  372 (656)
T ss_pred             HHHHHCCCHHHHH
Confidence            4455556655554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.09  E-value=7.7e-06  Score=65.45  Aligned_cols=61  Identities=20%  Similarity=0.298  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a  549 (575)
                      +...++.+|.++++.|+|++|+..+++ ++.++.+...++.+|.|++++++|++|++.++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            566788899999999999999999999 8899989899999999999999999999999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=4.1e-06  Score=83.43  Aligned_cols=87  Identities=31%  Similarity=0.458  Sum_probs=76.2

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH---
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR---  559 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~---  559 (575)
                      ++...+++..+.+|+.++++.+|.+|+..|+.||++.|+++..|.||+.+++.+++|++|.-|+++.++++|...+.   
T Consensus        43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r  122 (486)
T KOG0550|consen   43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR  122 (486)
T ss_pred             chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence            34467788999999999999999999999999999999999999999999999999999999999999999987743   


Q ss_pred             HHHHHHHHHH
Q 008170          560 VGYVDCSMLI  569 (575)
Q Consensus       560 ~~~~~~~l~~  569 (575)
                      .+++..++++
T Consensus       123 ~~~c~~a~~~  132 (486)
T KOG0550|consen  123 EGQCHLALSD  132 (486)
T ss_pred             hhhhhhhhHH
Confidence            3444444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.7e-05  Score=80.16  Aligned_cols=85  Identities=14%  Similarity=0.050  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |+...+|.-.|-.|...++-..|++.|++|++++|.|..+|+.+|++|.-++.+.=|+-+|++|+++.|++.   .++|.
T Consensus       361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~  440 (559)
T KOG1155|consen  361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGE  440 (559)
T ss_pred             cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            344445555555555555555555555555555555555555555555555555555555555555555444   34444


Q ss_pred             HHHHHHHh
Q 008170          563 VDCSMLIY  570 (575)
Q Consensus       563 ~~~~l~~~  570 (575)
                      ++..+.+.
T Consensus       441 CY~kl~~~  448 (559)
T KOG1155|consen  441 CYEKLNRL  448 (559)
T ss_pred             HHHHhccH
Confidence            44444333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.04  E-value=8.2e-06  Score=52.82  Aligned_cols=34  Identities=32%  Similarity=0.495  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      +.+|+++|.+|..++++++|+.+|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3577888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.04  E-value=1.9e-05  Score=88.32  Aligned_cols=89  Identities=15%  Similarity=0.145  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170          486 IDASELLKEKGNAAFKGKQWNK----AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~----Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~  558 (575)
                      |+....+.+.|..+++.|++++    |+..|+++++++|+++.++.++|.++.++|++++|+..++++++++|++.   .
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~  322 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA  322 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3446677777777777777774    67777777777777777777777777777777777777777777777766   3


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .++.++...|+|..|+
T Consensus       323 ~La~~l~~~G~~~eA~  338 (656)
T PRK15174        323 MYARALRQVGQYTAAS  338 (656)
T ss_pred             HHHHHHHHCCCHHHHH
Confidence            4455555566666554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.04  E-value=4.8e-05  Score=69.68  Aligned_cols=84  Identities=23%  Similarity=0.126  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHh
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL-------ELGCFQ-------QAEEDCSKTISL  552 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~-------~l~~~~-------~Ai~~~~~al~l  552 (575)
                      ..+..+.+.|..+.+.|++++|+..|.++++++|.....+.+++.++.       ++|+++       +|+..+++++..
T Consensus        70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~  149 (168)
T CHL00033         70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL  149 (168)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence            346789999999999999999999999999999999999999999999       777877       555556667888


Q ss_pred             CcccHHHHHHHHHHHHHh
Q 008170          553 DKKVRARVGYVDCSMLIY  570 (575)
Q Consensus       553 ~P~~~~~~~~~~~~l~~~  570 (575)
                      +|++.......+..+|+|
T Consensus       150 ~p~~~~~~~~~~~~~~~~  167 (168)
T CHL00033        150 APGNYIEAQNWLKITGRF  167 (168)
T ss_pred             CcccHHHHHHHHHHhcCC
Confidence            998776555555555554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.02  E-value=4.5e-05  Score=70.15  Aligned_cols=78  Identities=24%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhC
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--------------FQQAEEDCSKTISLD  553 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~--------------~~~Ai~~~~~al~l~  553 (575)
                      ....+.+.|..+++.|+|++|+..|.+++++.|++...+.++|.++..+++              +++|++.++++++++
T Consensus        71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603         71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            467899999999999999999999999999999999999999999999988              688999999999999


Q ss_pred             cccHHHHHHHHH
Q 008170          554 KKVRARVGYVDC  565 (575)
Q Consensus       554 P~~~~~~~~~~~  565 (575)
                      |++.......+.
T Consensus       151 p~~~~~~~~~~~  162 (172)
T PRK02603        151 PNNYIEAQNWLK  162 (172)
T ss_pred             chhHHHHHHHHH
Confidence            998644444333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.01  E-value=3.7e-05  Score=75.32  Aligned_cols=107  Identities=14%  Similarity=0.061  Sum_probs=76.5

Q ss_pred             CCchhHHhHHHHHHH--HhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH
Q 008170          450 GGDKFLLDTVLDLYD--SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---AT  524 (575)
Q Consensus       450 ~~d~~ll~~a~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~  524 (575)
                      +++......+..+..  .....+......-... .+..+.....++.+|..|+..|+|++|+..|.++++..|++   +.
T Consensus       140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            356666666655422  1222232222222111 12233445778889999999999999999999999887764   78


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       525 ~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +++++|.++.++|++++|+..|+++++..|+..
T Consensus       219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            899999999999999999999999999999876

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.99  E-value=6.6e-06  Score=53.18  Aligned_cols=34  Identities=38%  Similarity=0.567  Sum_probs=31.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008170          511 YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE  544 (575)
Q Consensus       511 ~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~  544 (575)
                      +|++||+++|+++.+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999963

>PLN02789 farnesyltranstransferase

Probab=97.96  E-value=5e-05  Score=76.72  Aligned_cols=90  Identities=12%  Similarity=0.001  Sum_probs=69.3

Q ss_pred             ChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCcccHH---
Q 008170          485 SIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF--QQAEEDCSKTISLDKKVRA---  558 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~--~~Ai~~~~~al~l~P~~~~---  558 (575)
                      +|++...|..++..+.+.+ ++++++..++++++.+|++..+|++|+.++.++++.  +++++.++++++++|+|..   
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~  146 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS  146 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence            5777888888888888887 578888888888888888888888888888888774  6778888888888888773   


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .++.+...+++|..+|
T Consensus       147 ~R~w~l~~l~~~~eeL  162 (320)
T PLN02789        147 HRQWVLRTLGGWEDEL  162 (320)
T ss_pred             HHHHHHHHhhhHHHHH
Confidence            4455555555555544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.94  E-value=5.6e-05  Score=72.09  Aligned_cols=84  Identities=17%  Similarity=0.214  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ..+.+.|..++..|++++|+..|.++++..  +.....+.++|.++.++|++++|+..++++++.+|++.   ..++.++
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            344444444444444444444444444432  22334444455555555555555555555555555443   2333334


Q ss_pred             HHHHHhhhh
Q 008170          565 CSMLIYLLC  573 (575)
Q Consensus       565 ~~l~~~~~~  573 (575)
                      ...+++..|
T Consensus       180 ~~~~~~~~A  188 (234)
T TIGR02521       180 YLRGQYKDA  188 (234)
T ss_pred             HHcCCHHHH
Confidence            444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.94  E-value=4e-05  Score=68.71  Aligned_cols=74  Identities=23%  Similarity=0.246  Sum_probs=59.3

Q ss_pred             ChhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHH
Q 008170          485 SIDASELLKEKGNAAFKG----------KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-----------FQQAE  543 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~----------g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-----------~~~Ai  543 (575)
                      +|.+++.|.+.|.++...          .-+++|+..|++||.++|+...+++++|.+|..++.           |++|.
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~  100 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT  100 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            467789999999888654          346889999999999999999999999999998753           88999


Q ss_pred             HHHHHHHHhCcccHH
Q 008170          544 EDCSKTISLDKKVRA  558 (575)
Q Consensus       544 ~~~~~al~l~P~~~~  558 (575)
                      .+|++|.+++|+|..
T Consensus       101 ~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen  101 EYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHH-TT-HH
T ss_pred             HHHHHHHhcCCCcHH
Confidence            999999999999873

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.91  E-value=5.5e-05  Score=73.34  Aligned_cols=72  Identities=15%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---YYSNRAAAYLEL--------GCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~---~~~~ra~~~~~l--------~~~~~Ai~~~~~al~l~P  554 (575)
                      +.....+..+|..++++|++++|+..|+++++..|++..   +++++|.++.++        +++++|++.++++++.+|
T Consensus        67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            445578899999999999999999999999999998765   799999999987        889999999999999999


Q ss_pred             ccH
Q 008170          555 KVR  557 (575)
Q Consensus       555 ~~~  557 (575)
                      ++.
T Consensus       147 ~~~  149 (235)
T TIGR03302       147 NSE  149 (235)
T ss_pred             CCh
Confidence            876

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=5.6e-05  Score=78.36  Aligned_cols=78  Identities=21%  Similarity=0.254  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDC  565 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~  565 (575)
                      -.-.+.|.|-.+.+.++|++||.+|+++|.+.|+++..+...|.+|..+|+++.|++.|.++|-++|++....-.+..
T Consensus       454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            345688999999999999999999999999999999999999999999999999999999999999999743333333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.0001  Score=74.72  Aligned_cols=91  Identities=14%  Similarity=0.084  Sum_probs=81.7

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR  559 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~  559 (575)
                      +.+|.+-++|+-.|..|--.+...-|+-+|++|+++.|+|...|--+|.||.++++.++|+.+|.+++...-.+.   ..
T Consensus       392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~  471 (559)
T KOG1155|consen  392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR  471 (559)
T ss_pred             hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence            457899999999999999999999999999999999999999999999999999999999999999998865433   56


Q ss_pred             HHHHHHHHHHhhhh
Q 008170          560 VGYVDCSMLIYLLC  573 (575)
Q Consensus       560 ~~~~~~~l~~~~~~  573 (575)
                      ++.++..++++..|
T Consensus       472 LakLye~l~d~~eA  485 (559)
T KOG1155|consen  472 LAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHHHHHHhHHHH
Confidence            77778888777665

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.88  E-value=0.00016  Score=62.89  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ....+++.|...++.|+|++|++.|+.....-|-.   ..+...++.+|++.++|++|+..+++-|+|+|+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            36789999999999999999999999999887654   68899999999999999999999999999999988

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.87  E-value=3e-05  Score=59.30  Aligned_cols=54  Identities=24%  Similarity=0.275  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHH-Hhhhhh
Q 008170          521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSML-IYLLCI  574 (575)
Q Consensus       521 ~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~-~~~~~i  574 (575)
                      +++..|+++|.+++++++|++|+.+|+++++++|++.   ..+|.++..++ +|..|+
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~   58 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAI   58 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHH
Confidence            3678999999999999999999999999999999988   46777777777 677765

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.87  E-value=5.2e-05  Score=60.49  Aligned_cols=67  Identities=27%  Similarity=0.432  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      ...+...|..+...+++++|++.|+++++..|.+...++.++.++..++++++|...++++++++|+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          34 ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            4778899999999999999999999999999999999999999999999999999999999998874

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.86  E-value=0.00012  Score=62.38  Aligned_cols=66  Identities=15%  Similarity=0.047  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      +.+++.+..+-..|+.++|+..|.++++...+.   ..++.++|.++..+|++++|+..+++++...|+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            356778888888888888888888888765443   567888888888888888888888888887776

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.81  E-value=4.5e-05  Score=49.20  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      .+|+++|.+++++|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456667777777777777777777777776654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.79  E-value=6.7e-05  Score=74.92  Aligned_cols=88  Identities=13%  Similarity=0.114  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV---RARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~---~~~~~~~  563 (575)
                      .+...|...|..+.+.|++++|+..|+++++++|++..++..++.++...|+++++.+.+++..+..|++   ...++.+
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            5577889999999999999999999999999999987777777777666666666555555544443332   2556666


Q ss_pred             HHHHHHhhhhh
Q 008170          564 DCSMLIYLLCI  574 (575)
Q Consensus       564 ~~~l~~~~~~i  574 (575)
                      +..+|++..|+
T Consensus       224 ~~~lg~~~~Al  234 (280)
T PF13429_consen  224 YLQLGRYEEAL  234 (280)
T ss_dssp             HHHHT-HHHHH
T ss_pred             hcccccccccc
Confidence            66666666554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.79  E-value=0.00016  Score=70.34  Aligned_cols=71  Identities=10%  Similarity=0.099  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~---~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...+.++..|..++++|+|++|++.|++.+...|....+   .+++|.+|+++++|++|+..+++.++++|+++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            356778899999999999999999999999999988654   59999999999999999999999999999987

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.78  E-value=8.8e-05  Score=72.42  Aligned_cols=74  Identities=15%  Similarity=0.169  Sum_probs=70.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+|+.-.+++.++.+|+..|+-.-|+..+++.|++.|+...+...||.+++++|++++|+.||+++|+.+|++.
T Consensus        67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen   67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.78  E-value=2.4e-05  Score=81.28  Aligned_cols=71  Identities=18%  Similarity=0.302  Sum_probs=68.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      +|.+...|..+|-.+-...++++||..|++|+++.|....++||+|.+++.+|.|+||+++|-.||.+.++
T Consensus       460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.77  E-value=0.00027  Score=80.80  Aligned_cols=88  Identities=11%  Similarity=-0.051  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      .....+..++..+...|++++|++.++++++..|++..++.++|.++..+|++++|+..++++++++|++.   ..++..
T Consensus       357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~  436 (765)
T PRK10049        357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT  436 (765)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999986   355666


Q ss_pred             HHHHHHhhhhh
Q 008170          564 DCSMLIYLLCI  574 (575)
Q Consensus       564 ~~~l~~~~~~i  574 (575)
                      ...+++|..|.
T Consensus       437 al~~~~~~~A~  447 (765)
T PRK10049        437 ALDLQEWRQMD  447 (765)
T ss_pred             HHHhCCHHHHH
Confidence            66667776654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.76  E-value=0.00012  Score=75.64  Aligned_cols=90  Identities=14%  Similarity=-0.050  Sum_probs=75.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-------  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-------  557 (575)
                      .+.....+...|..+..+|++++|+..++++++++|++..++..++.+++.+|++++|+..++++++..|...       
T Consensus       110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~  189 (355)
T cd05804         110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW  189 (355)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence            4566777778899999999999999999999999999999999999999999999999999999999876432       


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 008170          558 ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 ~~~~~~~~~l~~~~~~i  574 (575)
                      ..++.++...|++..++
T Consensus       190 ~~la~~~~~~G~~~~A~  206 (355)
T cd05804         190 WHLALFYLERGDYEAAL  206 (355)
T ss_pred             HHHHHHHHHCCCHHHHH
Confidence            24667777777776664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.76  E-value=0.00031  Score=66.46  Aligned_cols=71  Identities=21%  Similarity=0.249  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...+.+++.|..++++|+|.+|+..|++.+...|..   ..+.+.++.++++.++|++|+..+++.++..|++.
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~   76 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP   76 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            357789999999999999999999999999998875   67899999999999999999999999999999877

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.76  E-value=8.7e-05  Score=88.70  Aligned_cols=89  Identities=10%  Similarity=-0.021  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |.+...+..+|..+.+.|++++|+..|+++++++|+++.++++++.+|..+|++++|++.++++++.+|++.   ..++.
T Consensus       600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~  679 (1157)
T PRK11447        600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL  679 (1157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            445567788999999999999999999999999999999999999999999999999999999999988876   34666


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+|++..|+
T Consensus       680 ~~~~~g~~~eA~  691 (1157)
T PRK11447        680 AWAALGDTAAAQ  691 (1157)
T ss_pred             HHHhCCCHHHHH
Confidence            666777776654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.75  E-value=0.00019  Score=67.96  Aligned_cols=88  Identities=15%  Similarity=0.021  Sum_probs=76.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      +|.+.+.|..+|-.|.+.|++++|-..|.+++++.|+++.+++|++..|+-.|+++.|...+.++...-+.+.   .++.
T Consensus       130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA  209 (257)
T COG5010         130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA  209 (257)
T ss_pred             CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            3677899999999999999999999999999999999999999999999999999999999999988776555   4555


Q ss_pred             HHHHHHHHhhh
Q 008170          562 YVDCSMLIYLL  572 (575)
Q Consensus       562 ~~~~~l~~~~~  572 (575)
                      .+....|++..
T Consensus       210 l~~~~~g~~~~  220 (257)
T COG5010         210 LVVGLQGDFRE  220 (257)
T ss_pred             HHHhhcCChHH
Confidence            55555555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.70  E-value=0.00014  Score=86.87  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      ...+..+|..+..+|++++|++.|+++++++|+++.++++++.+|.++|++++|+..++++++++|++..
T Consensus       461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            3457789999999999999999999999999999999999999999999999999999999999999884

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.69  E-value=0.00027  Score=74.02  Aligned_cols=66  Identities=14%  Similarity=0.062  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      .+...|..++++|++++|+..|+++++.+|++..+++.++.++.+.|++++|++.++++++.+|++
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            344555555555555555555555555555555555555555555555555555555555555543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=7.7e-05  Score=48.17  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS  522 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~  522 (575)
                      +..|.++|..++.+|+|++|+.+|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4679999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.68  E-value=0.00026  Score=80.81  Aligned_cols=72  Identities=8%  Similarity=0.018  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      |.....+...+..+.+.|++++|+..++++++.+|+++. ++.++.++...|++++|+..++++++++|++..
T Consensus        80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~  151 (765)
T PRK10049         80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ  151 (765)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            444556667777777777777777777777777777777 777777777777777777777777777777663

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.66  E-value=0.00017  Score=83.62  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ....+...|..++++|+|++|+..+.++++.+|+++.+++.+|.++.++|+|++|+..++++++..|++.   ..++.++
T Consensus        21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  100 (899)
T TIGR02917        21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY  100 (899)
T ss_pred             CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999988755   3445555


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ...|+|..++
T Consensus       101 ~~~g~~~~a~  110 (899)
T TIGR02917       101 LLQGKFQQVL  110 (899)
T ss_pred             HHCCCHHHHH
Confidence            5556665554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.66  E-value=0.00011  Score=50.57  Aligned_cols=41  Identities=15%  Similarity=0.023  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA  531 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~  531 (575)
                      .+...|..+.+.|++++|++.|+++++.+|+++.++..++.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45667777777777777777777777777777777776654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.64  E-value=0.00034  Score=68.61  Aligned_cols=86  Identities=10%  Similarity=-0.092  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------H
Q 008170          489 SELLKEKGNAA-FKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------A  558 (575)
Q Consensus       489 a~~~~~~g~~~-~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------~  558 (575)
                      ...+++.+..+ +++|+|++|+..|++.++..|++   +.+++.+|.+|+..++|++|+..|+++++..|++.      .
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45667777776 77899999999999999999998   58999999999999999999999999999999865      2


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .++.++..++++..|+
T Consensus       222 klg~~~~~~g~~~~A~  237 (263)
T PRK10803        222 KVGVIMQDKGDTAKAK  237 (263)
T ss_pred             HHHHHHHHcCCHHHHH
Confidence            3466666666666554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.63  E-value=0.00036  Score=71.60  Aligned_cols=74  Identities=20%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR  559 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~  559 (575)
                      |++.-.+.-.+..+++.++.++|++.+++++.++|+...++.|+|.+|++.|++++|+..+++.+.-+|+++..
T Consensus       337 P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~  410 (484)
T COG4783         337 PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG  410 (484)
T ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence            56677888899999999999999999999999999999999999999999999999999999999999988743

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.62  E-value=0.0004  Score=80.42  Aligned_cols=72  Identities=22%  Similarity=0.139  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +..+..+...|..+++.|+|++|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  193 (899)
T TIGR02917       122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV  193 (899)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence            344455555555555555555555555555555555555555555555555555555555555555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.60  E-value=0.00017  Score=46.43  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS  522 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~  522 (575)
                      ++.|..+|..+++.|+|++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15331 chaperone protein SicA; Provisional

Probab=97.59  E-value=0.00032  Score=62.44  Aligned_cols=71  Identities=13%  Similarity=0.002  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +-+.+.+..+|.++...++|++|+..|..+..++++++...+..|.||+.+++.++|+..|..++. +|.+.
T Consensus        68 ~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331         68 FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            344668999999999999999999999999999999999999999999999999999999999998 57666

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.59  E-value=8.1e-05  Score=68.25  Aligned_cols=72  Identities=19%  Similarity=0.177  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+.+..++++|+.|-..|-+.-|--.|++++.+.|+-+.+++.+|.-+...|+|+.|.+.|+-.+++||.+.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            466788888998888888888888889999999999999999999888888999999999999999998766

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.52  E-value=0.00051  Score=71.92  Aligned_cols=85  Identities=8%  Similarity=-0.052  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--ARVGYVDC  565 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~~  565 (575)
                      ...+...|..+.+.|++++|++.|+++++.+|++ ..++..++.+|.++|++++|+..++++++.+|+..  ..++.++.
T Consensus       214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~  293 (389)
T PRK11788        214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLE  293 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            3455556666666666666666666666665554 34455566666666666666666666666665543  23333444


Q ss_pred             HHHHhhhh
Q 008170          566 SMLIYLLC  573 (575)
Q Consensus       566 ~l~~~~~~  573 (575)
                      ..+++..|
T Consensus       294 ~~g~~~~A  301 (389)
T PRK11788        294 EQEGPEAA  301 (389)
T ss_pred             HhCCHHHH
Confidence            44444433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00018  Score=74.71  Aligned_cols=90  Identities=21%  Similarity=0.268  Sum_probs=77.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .|.+.-.+.+.|.++|+.+.|.+|+..|+++++.-       +.....+.|+|.++.+++++++||..++++|.+.|+++
T Consensus       410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~  489 (611)
T KOG1173|consen  410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA  489 (611)
T ss_pred             CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence            36778889999999999999999999999999432       12356799999999999999999999999999999988


Q ss_pred             ---HHHHHHHHHHHHhhhhh
Q 008170          558 ---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 ---~~~~~~~~~l~~~~~~i  574 (575)
                         ...|+++.-+|++..||
T Consensus       490 ~~~asig~iy~llgnld~Ai  509 (611)
T KOG1173|consen  490 STHASIGYIYHLLGNLDKAI  509 (611)
T ss_pred             hHHHHHHHHHHHhcChHHHH
Confidence               46788888888888776

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.49  E-value=0.00067  Score=59.04  Aligned_cols=71  Identities=21%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC---------------HHHHHHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGC---------------FQQAEEDCSKT  549 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~---------------~~~Ai~~~~~a  549 (575)
                      ..++..+++..+|++++|++|+..|++.|+++|++   .-+++.+|++++++.+               ..+|+.+|++.
T Consensus        46 a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l  125 (142)
T PF13512_consen   46 AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL  125 (142)
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence            34667889999999999999999999999999987   4579999999999987               99999999999


Q ss_pred             HHhCcccHH
Q 008170          550 ISLDKKVRA  558 (575)
Q Consensus       550 l~l~P~~~~  558 (575)
                      ++.-|++..
T Consensus       126 v~~yP~S~y  134 (142)
T PF13512_consen  126 VRRYPNSEY  134 (142)
T ss_pred             HHHCcCChh
Confidence            999999773

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.48  E-value=0.00012  Score=71.55  Aligned_cols=73  Identities=25%  Similarity=0.259  Sum_probs=68.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .|.++-.+.|++.+|+++++|..|...++.|+.++.....+|..|+.+...+|+..||.+||+.+|+|.|++.
T Consensus       127 ~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  127 YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence            4556778899999999999999999999999999999999999999999999999999999999999999876

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.46  E-value=0.00053  Score=73.91  Aligned_cols=69  Identities=17%  Similarity=0.079  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ++..+...|..+..+|++++|...|++|++++| +..+|..+|.++...|++++|++.|++|++++|.++
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            356777889999999999999999999999999 588999999999999999999999999999999876

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.46  E-value=0.00019  Score=71.60  Aligned_cols=89  Identities=16%  Similarity=0.096  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |++...+...+..+...|+++++.+.+....+..|+++.++..+|.++..+|++++|+..++++++.+|+++   ..++.
T Consensus       177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~  256 (280)
T PF13429_consen  177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD  256 (280)
T ss_dssp             TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence            566778888999999999999988888888888888888999999999999999999999999999999988   56777


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++...|++..|+
T Consensus       257 ~l~~~g~~~~A~  268 (280)
T PF13429_consen  257 ALEQAGRKDEAL  268 (280)
T ss_dssp             HHT---------
T ss_pred             cccccccccccc
Confidence            777778777664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.00081  Score=63.41  Aligned_cols=78  Identities=14%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKVRARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~---~~~~Ai~~~~~al~l~P~~~~~~~~  562 (575)
                      +.+.++|.+.+..|+..|+|++|.-||.+.+-+.|.++..+..+|.+++-+|   +++-|.++|.++++++|.+...+..
T Consensus       151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G  230 (289)
T KOG3060|consen  151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG  230 (289)
T ss_pred             cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence            3568899999999999999999999999999999999999999999999875   6888999999999999977654333


Q ss_pred             H
Q 008170          563 V  563 (575)
Q Consensus       563 ~  563 (575)
                      +
T Consensus       231 I  231 (289)
T KOG3060|consen  231 I  231 (289)
T ss_pred             H
Confidence            3

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.43  E-value=0.00081  Score=73.57  Aligned_cols=87  Identities=16%  Similarity=0.024  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |.....|+.+|.+|-++|+.++++.++..|-.++|++...|...+....++|++.+|+-+|.+||+.+|.+.   ..+..
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~  249 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS  249 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555555555555555544   23334


Q ss_pred             HHHHHHHhhh
Q 008170          563 VDCSMLIYLL  572 (575)
Q Consensus       563 ~~~~l~~~~~  572 (575)
                      ++..+|++..
T Consensus       250 L~~~~G~~~~  259 (895)
T KOG2076|consen  250 LYQKTGDLKR  259 (895)
T ss_pred             HHHHhChHHH
Confidence            4444444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.0014  Score=62.99  Aligned_cols=73  Identities=12%  Similarity=0.068  Sum_probs=47.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ..-.+++++=+|..+|.+|+|++|...|...++-.|++   +++++.+|.|..++++.++|...++++++..|+..
T Consensus       174 s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         174 STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            33444455556777777777777777777766665544   56677777777777777777777777777766655

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.00059  Score=70.25  Aligned_cols=92  Identities=23%  Similarity=0.246  Sum_probs=80.0

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcccHHH
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL---GCFQQAEEDCSKTISLDKKVRAR  559 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l---~~~~~Ai~~~~~al~l~P~~~~~  559 (575)
                      .+-++..+.++.+||..|-.+....|+..|.++++..|+...+|.||+.++++.   ++...|+.||..++++||-..++
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            455788999999999999999999999999999999999999999999999986   57889999999999999988866


Q ss_pred             HHHHHH---HHHHhhhhh
Q 008170          560 VGYVDC---SMLIYLLCI  574 (575)
Q Consensus       560 ~~~~~~---~l~~~~~~i  574 (575)
                      ++++..   .+++|+.||
T Consensus       448 h~~la~aL~el~r~~eal  465 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEAL  465 (758)
T ss_pred             HHHHHHHHHHHhhHHHhh
Confidence            555554   456666655

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.34  E-value=0.00058  Score=47.00  Aligned_cols=40  Identities=23%  Similarity=0.195  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      .+++.+|.+|..+|++++|++.|+++++.+|++...+..+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            5789999999999999999999999999999998755443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.33  E-value=0.0015  Score=58.18  Aligned_cols=89  Identities=12%  Similarity=0.010  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKKVRARV  560 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l--~P~~~~~~  560 (575)
                      +-.....+..+..++.+|+|++|+..|+++++..|+.   ..+.++++.+++.+++|++|+..+++.-.-  .|.....+
T Consensus        45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~  124 (145)
T PF09976_consen   45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELL  124 (145)
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHH
Confidence            3446778889999999999999999999999987665   568899999999999999999999763211  11112567


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      |.++...|++..|+
T Consensus       125 Gdi~~~~g~~~~A~  138 (145)
T PF09976_consen  125 GDIYLAQGDYDEAR  138 (145)
T ss_pred             HHHHHHCCCHHHHH
Confidence            88888888887765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.32  E-value=0.00036  Score=71.86  Aligned_cols=57  Identities=9%  Similarity=-0.043  Sum_probs=50.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHhhhhh
Q 008170          518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       518 ~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~------~~~~~~~~~l~~~~~~i  574 (575)
                      .+|+++.+|+|+|.+|+++|+|++|+..|+++|+++|++.      .+++.++..+|++..|+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAl  132 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAA  132 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence            5899999999999999999999999999999999999975      56666677777777665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.26  E-value=0.0014  Score=67.45  Aligned_cols=89  Identities=13%  Similarity=0.056  Sum_probs=81.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      +.....++-++..++..|++++|+..++..+...|+|+-++..++.++++.++.++|++.+++++.++|+..   ..++.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            455778889999999999999999999999999999999999999999999999999999999999999976   57788


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      .+...|++..+|
T Consensus       383 all~~g~~~eai  394 (484)
T COG4783         383 ALLKGGKPQEAI  394 (484)
T ss_pred             HHHhcCChHHHH
Confidence            888888877665

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.25  E-value=0.00047  Score=44.32  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .+|+.+|.+|.++|++++|++.++++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46677777777777777777777777777764

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.24  E-value=0.0014  Score=74.41  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      .....+...|..+..+|+|++|++.|+++++.+|+++.++..++..+.+++++++|++.++++++++|++..
T Consensus       100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~  171 (822)
T PRK14574        100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN  171 (822)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence            445667777889999999999999999999999999999999999999999999999999999999998664

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.22  E-value=0.0016  Score=71.93  Aligned_cols=81  Identities=15%  Similarity=0.223  Sum_probs=72.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      .+..++.++..|..+..+|+|++|..+|.++++.++++ ...++.+|+.|++.|++++|+.+|+++++..|++...+..+
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            35678889999999999999999999999999999998 77899999999999999999999999999999999544433


Q ss_pred             HH
Q 008170          564 DC  565 (575)
Q Consensus       564 ~~  565 (575)
                      ++
T Consensus       383 G~  384 (1018)
T KOG2002|consen  383 GC  384 (1018)
T ss_pred             Hh
Confidence            33

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.19  E-value=0.0026  Score=69.81  Aligned_cols=87  Identities=16%  Similarity=0.078  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      .....+..++|.+|-.|++++|.+.+.++|+++|.++.+|+.+|.+|.++|+.+++....-.|--++|+++   ..++..
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999877   344444


Q ss_pred             HHHHHHhhhh
Q 008170          564 DCSMLIYLLC  573 (575)
Q Consensus       564 ~~~l~~~~~~  573 (575)
                      ...++.+.+|
T Consensus       217 s~~~~~i~qA  226 (895)
T KOG2076|consen  217 SEQLGNINQA  226 (895)
T ss_pred             HHhcccHHHH
Confidence            4444544443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.14  E-value=0.0017  Score=69.57  Aligned_cols=119  Identities=15%  Similarity=0.133  Sum_probs=78.4

Q ss_pred             CCcccccccccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCC-------------CChhHHHHHHHHHHHHHHcCCH
Q 008170          439 HPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTN-------------GSIDASELLKEKGNAAFKGKQW  505 (575)
Q Consensus       439 lPvGlqivg~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~a~~~~~~g~~~~~~g~~  505 (575)
                      .|.==.+.|.--.|..+.+-+-.+-+.....+..+.....-.+++             .+|-....|+..|.++++.+++
T Consensus       456 d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  456 DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence            444445566666666666666555554433333332222111111             2445566778888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       506 ~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +.|.++|+..+.++|++..+|+|++.+|+++++-.+|...+++|++-+-+++
T Consensus       536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW  587 (777)
T ss_pred             HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence            8888888888888888888888888888888888888888888887775444

>PRK11906 transcriptional regulator; Provisional

Probab=97.13  E-value=0.0016  Score=67.29  Aligned_cols=73  Identities=16%  Similarity=0.097  Sum_probs=68.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ++.++.++...|......++++.|+..|++|+.++|+++.+|+.+|.++.-.|+.++|++..+++++++|...
T Consensus       334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            3677899999999999999999999999999999999999999999999999999999999999999999644

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.09  E-value=0.00057  Score=69.01  Aligned_cols=86  Identities=19%  Similarity=0.178  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ++.++.++||..|..|+|++|.+.|.+||.-+..+..+++|.|+.+.++|+.++|+++|-+.-.+--++.   ...+.++
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4567788999999999999999999999998888899999999999999999999999988654444444   3444455


Q ss_pred             HHHHHhhhh
Q 008170          565 CSMLIYLLC  573 (575)
Q Consensus       565 ~~l~~~~~~  573 (575)
                      ..+.+-.+|
T Consensus       569 e~led~aqa  577 (840)
T KOG2003|consen  569 ELLEDPAQA  577 (840)
T ss_pred             HHhhCHHHH
Confidence            544444443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.06  E-value=0.00038  Score=71.40  Aligned_cols=79  Identities=22%  Similarity=0.230  Sum_probs=71.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      +|+.+..+-+++.++++.++|..|+....+||+++|....+|+.||.+.++++++.+|+.++++...+.|+.++.+-.+
T Consensus        34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~  112 (476)
T KOG0376|consen   34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKI  112 (476)
T ss_pred             CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence            3566778888999999999999999999999999999999999999999999999999999999999999988544333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.06  E-value=0.0031  Score=65.28  Aligned_cols=80  Identities=14%  Similarity=0.049  Sum_probs=42.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhh
Q 008170          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYL  571 (575)
Q Consensus       495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~  571 (575)
                      .+..++..++..+|++.+.++++.+|.+..++...+..+++.++++.|+..+++++++.|+..   ..++.++..+++|.
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence            344444455555555555555555555555555555555555555555555555555555443   34445555555555


Q ss_pred             hhh
Q 008170          572 LCI  574 (575)
Q Consensus       572 ~~i  574 (575)
                      .||
T Consensus       286 ~AL  288 (395)
T PF09295_consen  286 NAL  288 (395)
T ss_pred             HHH
Confidence            443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.05  E-value=0.0025  Score=67.47  Aligned_cols=89  Identities=11%  Similarity=0.181  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      ++.---|.-.|..+...++|++||.+|+.|+.++|+|..+|..++....++++|+.....-.+.++++|.+.   ..++.
T Consensus        72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av  151 (700)
T KOG1156|consen   72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV  151 (700)
T ss_pred             cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            344557889999999999999999999999999999999999999999999999999999999999999755   45666


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      .+..+|+|.+|+
T Consensus       152 s~~L~g~y~~A~  163 (700)
T KOG1156|consen  152 AQHLLGEYKMAL  163 (700)
T ss_pred             HHHHHHHHHHHH
Confidence            677778887764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.0019  Score=71.39  Aligned_cols=73  Identities=22%  Similarity=0.328  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      |+..-.+.-++...|+.++|..|+.+|.+++.++|.. +.....+|.|+.++++.+.|+..+.++++|||.+..
T Consensus       161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~  234 (1018)
T KOG2002|consen  161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVS  234 (1018)
T ss_pred             CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHH
Confidence            5678899999999999999999999999999999976 567788999999999999999999999999998774

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0044  Score=58.16  Aligned_cols=71  Identities=20%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...-.+.|...++++.++|-++++..+..|..+|.+..+||.||.++...-+..+|..|+.++|+++|.-.
T Consensus       228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            34456889999999999999999999999999999999999999999999999999999999999999755

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.99  E-value=0.0015  Score=69.96  Aligned_cols=71  Identities=13%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY  562 (575)
Q Consensus       492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~  562 (575)
                      ....|+..+++++|+++.++++..++++|-....|+++|.|.+++++++.|..+|.+++.++|++..++.+
T Consensus       488 ~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnN  558 (777)
T KOG1128|consen  488 QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNN  558 (777)
T ss_pred             HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhh
Confidence            33445555678999999999999999999999999999999999999999999999999999998844333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.96  E-value=0.0032  Score=68.01  Aligned_cols=88  Identities=19%  Similarity=0.071  Sum_probs=72.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCcccHHH---H
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE--DCSKTISLDKKVRAR---V  560 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~--~~~~al~l~P~~~~~---~  560 (575)
                      +..+..|+..|..+..+|++++|.+.|..|+.+||+++.....+|.++.+.|+..-|..  .+..++++||.|.++   +
T Consensus       681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            55677889999999999999999999999999999999999999999999998777777  889999999988854   4


Q ss_pred             HHHHHHHHHhhhh
Q 008170          561 GYVDCSMLIYLLC  573 (575)
Q Consensus       561 ~~~~~~l~~~~~~  573 (575)
                      |.+...+|+...|
T Consensus       761 G~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  761 GEVFKKLGDSKQA  773 (799)
T ss_pred             HHHHHHccchHHH
Confidence            4444555665543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.96  E-value=0.0046  Score=60.39  Aligned_cols=89  Identities=10%  Similarity=0.052  Sum_probs=77.9

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----H
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR----A  558 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~----~  558 (575)
                      +.+-+.+..|-+.+..+....+.+.|...+.+|++.+|++..+-..+|.+++..|+|++|++.++.+++-||++.    .
T Consensus       174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~  253 (389)
T COG2956         174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE  253 (389)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence            345677888999999999999999999999999999999999999999999999999999999999999999877    4


Q ss_pred             HHHHHHHHHHHhh
Q 008170          559 RVGYVDCSMLIYL  571 (575)
Q Consensus       559 ~~~~~~~~l~~~~  571 (575)
                      .+..++..+|+-.
T Consensus       254 ~L~~~Y~~lg~~~  266 (389)
T COG2956         254 MLYECYAQLGKPA  266 (389)
T ss_pred             HHHHHHHHhCCHH
Confidence            5666666666543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.96  E-value=0.0088  Score=57.09  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      -+..|+++|...++.|+|++|+..|+......|..   ..+...++.++++-++|++|+...++-+++.|+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~  105 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP  105 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence            47899999999999999999999999999887754   67899999999999999999999999999999887

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.93  E-value=0.0056  Score=63.14  Aligned_cols=86  Identities=16%  Similarity=0.076  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------------------------------------HHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-------------------------------------YYSNRAA  531 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-------------------------------------~~~~ra~  531 (575)
                      .+....++..++..|++++|+..+.++++.+|++..                                     .+.+++.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            445556777777888888888877777777666543                                     3446677


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          532 AYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       532 ~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      ++..+|++++|+..++++++++|++.   ..++.++...+++..|+
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~  168 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGI  168 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            88999999999999999999999876   45677777777777664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.91  E-value=0.0057  Score=66.08  Aligned_cols=88  Identities=20%  Similarity=0.072  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------------------------
Q 008170          487 DASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAY------------------------------  533 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~ra~~~------------------------------  533 (575)
                      -.+-.++-+|..++..++   +++|+.+|++|++++|+++.+|..++.+|                              
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~  416 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL  416 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence            346667778888877655   78999999999999998866555444433                              


Q ss_pred             --------------HHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhhhhh
Q 008170          534 --------------LELGCFQQAEEDCSKTISLDKKVR--ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       534 --------------~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~~~l~~~~~~i  574 (575)
                                    ...|++++|...+++++.++|+..  ..+|.++...|++..|+
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~  473 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA  473 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                          234667777777777777777422  23444444555555443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.0094  Score=56.42  Aligned_cols=73  Identities=14%  Similarity=0.020  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      |.+...++.+--..-.+|+--+||+...+-++.-+.|.++|..++..|+.+++|++|.-++++++-++|-++.
T Consensus       117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l  189 (289)
T KOG3060|consen  117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL  189 (289)
T ss_pred             cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH
Confidence            5666677777777888899999999999999999999999999999999999999999999999999998883

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.89  E-value=0.0023  Score=58.97  Aligned_cols=79  Identities=18%  Similarity=0.147  Sum_probs=71.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      +|+.+..+.-.|.-+...|+|+.|.+.|+-.+++||.+--++.|||..++--|+|+-|.+|+.+-.+-||+++.+--.+
T Consensus        95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL  173 (297)
T COG4785          95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL  173 (297)
T ss_pred             CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence            4677888888999999999999999999999999999999999999999999999999999999999999988543333

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.88  E-value=0.0059  Score=51.68  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |+.+..|.|++..+.-+|+-++|++.+++|+++.-+.    -.+|..||..|..+|+-+.|..||+.+-++-..+.
T Consensus        74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen   74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            6778899999999999999999999999999997543    35799999999999999999999999988866544

>PRK10941 hypothetical protein; Provisional

Probab=96.88  E-value=0.0062  Score=59.72  Aligned_cols=70  Identities=19%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      .+.+.+.-..+.++++|+.|+.+.+..+.++|+++.-+..||.+|.+++.+..|+.|++.-++..|+.+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence            4456677788999999999999999999999999999999999999999999999999999999999883

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.88  E-value=0.0028  Score=65.54  Aligned_cols=67  Identities=22%  Similarity=0.285  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      |.++..+..++..++++++|+.|+...++++++.|++...|+.++.||.++|+|++|+..++-+-..
T Consensus       231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            4458899999999999999999999999999999999999999999999999999999887755433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.87  E-value=0.009  Score=51.00  Aligned_cols=67  Identities=18%  Similarity=0.090  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      +...+.+.+.|..+...|++++|+..+++++...|+   +..+...++.++..+|++++|++.+-+++.-
T Consensus        35 ~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   35 ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455779999999999999999999999999999888   7888889999999999999999999988853

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.0069  Score=59.24  Aligned_cols=74  Identities=11%  Similarity=0.084  Sum_probs=64.2

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+|+..++-..+|+.+..+|+|++|++.+...++.||+. +.+...+..||.++|+.++.+..+.++.+..++..
T Consensus       209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            456666677788999999999999999999999999987 56888899999999999999999999999887654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.87  E-value=0.014  Score=51.94  Aligned_cols=89  Identities=18%  Similarity=0.069  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-----  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-----  557 (575)
                      .+.+...+......+..+++..+...+++.++-.|+.   ..+.+.+|.+++..|++++|+..|++++...|+..     
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a   87 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA   87 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            3456677788888889999999999999999999988   67889999999999999999999999999876543     


Q ss_pred             -HHHHHHHHHHHHhhhhh
Q 008170          558 -ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -~~~~~~~~~l~~~~~~i  574 (575)
                       ..++.++...++|..|+
T Consensus        88 ~l~LA~~~~~~~~~d~Al  105 (145)
T PF09976_consen   88 RLRLARILLQQGQYDEAL  105 (145)
T ss_pred             HHHHHHHHHHcCCHHHHH
Confidence             45777788888887765

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.85  E-value=0.0029  Score=68.31  Aligned_cols=74  Identities=15%  Similarity=0.103  Sum_probs=68.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVN--YYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~--~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      -+|++.......|..+.+.|+-.-|..  ....+++++|.+.++|+++|.++.++|+.++|.++|+.|+++++.++
T Consensus       713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            357788888999999999999888877  99999999999999999999999999999999999999999998776

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.82  E-value=0.0017  Score=71.71  Aligned_cols=88  Identities=16%  Similarity=0.212  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~  563 (575)
                      .....|..+|-.|.+.+++.+|+..|+-|++.+|++..+|..+|.+|...|+|.-|++.|+|+..++|.+..   ..+.+
T Consensus       560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~  639 (1238)
T KOG1127|consen  560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM  639 (1238)
T ss_pred             HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence            345567779999999999999999999999999999999999999999999999999999999999998773   34556


Q ss_pred             HHHHHHhhhhh
Q 008170          564 DCSMLIYLLCI  574 (575)
Q Consensus       564 ~~~l~~~~~~i  574 (575)
                      .+.+|+|..++
T Consensus       640 ecd~GkYkeal  650 (1238)
T KOG1127|consen  640 ECDNGKYKEAL  650 (1238)
T ss_pred             HHHhhhHHHHH
Confidence            67788887765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.81  E-value=0.015  Score=56.49  Aligned_cols=72  Identities=18%  Similarity=0.046  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC------------------HHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGC------------------FQQAEE  544 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~------------------~~~Ai~  544 (575)
                      +.........|..+++.++|++|+..|++.++..|++   ..+++.+|.++..+++                  -.+|+.
T Consensus        66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~  145 (243)
T PRK10866         66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR  145 (243)
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence            4555668899999999999999999999999999887   5679999999766541                  357889


Q ss_pred             HHHHHHHhCcccH
Q 008170          545 DCSKTISLDKKVR  557 (575)
Q Consensus       545 ~~~~al~l~P~~~  557 (575)
                      .+++.++..|+..
T Consensus       146 ~~~~li~~yP~S~  158 (243)
T PRK10866        146 DFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHHHHHHCcCCh
Confidence            9999999999866

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.79  E-value=0.0029  Score=40.58  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS  522 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~  522 (575)
                      ++.|..+|..+.+.|++++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3578999999999999999999999999999853

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.75  E-value=0.011  Score=63.58  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSM  567 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l  567 (575)
                      +++.+.=+...+...|+|++|++++.+.-..-.+....+-.+|.+++++|++++|...|.+.|+.+|+|...+..+..++
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            45666667788899999999999999988888889999999999999999999999999999999999986555555554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.75  E-value=0.004  Score=46.70  Aligned_cols=38  Identities=21%  Similarity=0.419  Sum_probs=34.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA  523 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~  523 (575)
                      |+....++.+|.+++++|++++|+..|+++++++|+++
T Consensus        28 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   28 PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            67899999999999999999999999999999999875

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.73  E-value=0.004  Score=66.00  Aligned_cols=89  Identities=11%  Similarity=-0.014  Sum_probs=80.9

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV  560 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~  560 (575)
                      ..|++.+.+--+|..+...|+-++|..+...++..|+.+..+|.-+|.++..-++|++|+.+|..|++++|+|.   ..+
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            34678888899999999999999999999999999999999999999999999999999999999999999998   566


Q ss_pred             HHHHHHHHHhhh
Q 008170          561 GYVDCSMLIYLL  572 (575)
Q Consensus       561 ~~~~~~l~~~~~  572 (575)
                      ..++..+++|..
T Consensus       116 slLQ~QmRd~~~  127 (700)
T KOG1156|consen  116 SLLQIQMRDYEG  127 (700)
T ss_pred             HHHHHHHHhhhh
Confidence            777777777754

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.72  E-value=0.0061  Score=67.54  Aligned_cols=75  Identities=16%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKVR---ARVGYVDCS  566 (575)
Q Consensus       492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~~---~~~~~~~~~  566 (575)
                      ....+...++.++|++|++...++++.+|+|..++..+|.++..+++ .++|.+.|..+.+++|++.   +.++.++..
T Consensus         5 aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~   83 (1238)
T KOG1127|consen    5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER   83 (1238)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence            44567788899999999999999999999999999999999999998 9999999999999999988   444554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.70  E-value=0.01  Score=42.40  Aligned_cols=37  Identities=16%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      +.++.+|..++++|+|++|.+.++++|+++|+|..+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            3578899999999999999999999999999988643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.66  E-value=0.031  Score=63.71  Aligned_cols=91  Identities=11%  Similarity=-0.043  Sum_probs=82.1

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR  559 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~  559 (575)
                      ..+++-.+....++..+.-.|++.+|.+.+++.+...|.+..++..+|.++...|++.+|+..+++++.++|++.   ..
T Consensus       410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~  489 (822)
T PRK14574        410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA  489 (822)
T ss_pred             CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence            456777788888999999999999999999999999999999999999999999999999999999999999977   56


Q ss_pred             HHHHHHHHHHhhhh
Q 008170          560 VGYVDCSMLIYLLC  573 (575)
Q Consensus       560 ~~~~~~~l~~~~~~  573 (575)
                      ++.....+++|..+
T Consensus       490 ~~~~al~l~e~~~A  503 (822)
T PRK14574        490 QAETAMALQEWHQM  503 (822)
T ss_pred             HHHHHHhhhhHHHH
Confidence            77788888888765

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0037  Score=58.51  Aligned_cols=67  Identities=13%  Similarity=0.122  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      |.-+..|.+++.++++.++|+.......+|++++|+.+..++.++++++..+.|++||..+.++..+
T Consensus        41 P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   41 PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            5557789999999999999999999999999999999999999999999999999999999999655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.64  E-value=0.023  Score=61.20  Aligned_cols=69  Identities=22%  Similarity=0.154  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .-.++-++..+-..|+|++|++..++||+..|..++.|+.+|.++-+.|++++|.+.++.|-++|+.+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR  262 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR  262 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence            345577899999999999999999999999999999999999999999999999999999999998765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.62  E-value=0.0098  Score=53.64  Aligned_cols=64  Identities=19%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCcccHHH---HHHHHHHHH
Q 008170          505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG----------CFQQAEEDCSKTISLDKKVRAR---VGYVDCSML  568 (575)
Q Consensus       505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~----------~~~~Ai~~~~~al~l~P~~~~~---~~~~~~~l~  568 (575)
                      |++|.+.|......+|.++..++|-|.+++.+-          -+++|++=|++||+++|+...+   +|..+..++
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999873          3678899999999999998854   444444444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=0.013  Score=55.76  Aligned_cols=71  Identities=15%  Similarity=0.250  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .....+++.+..+.-+++|.+|...|++.+..||.++.+.+|+|.|++-+|+..+|++..+.+++..|...
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            34567788999999999999999999999999999999999999999999999999999999999999765

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.58  E-value=0.0093  Score=63.58  Aligned_cols=71  Identities=24%  Similarity=0.346  Sum_probs=62.3

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      ...+.-+..+...|..|..+++|.+|+..|.+|+.+        +|.-+..+.|+|..|.+.|+|++|..+|++|+++-
T Consensus       235 ~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  235 LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            345667777778999999999999999999999976        34457889999999999999999999999999774

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0042  Score=60.87  Aligned_cols=70  Identities=26%  Similarity=0.322  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      -.+..|.|++-+.+-.|+|..||...++++.++|.+..+|+.-|.|++.++++.+|+..|+..++++-+.
T Consensus       117 lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  117 LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            4577889999999999999999999999999999999999999999999999999999999988776543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.56  E-value=0.0021  Score=64.42  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=83.8

Q ss_pred             cccCCch-hHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 008170          447 TYHGGDK-FLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---  522 (575)
Q Consensus       447 g~~~~d~-~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---  522 (575)
                      |..+.|. .-++-|..++..+.+..++....         ..+-+.+-++||.|+-.|+|++||.+-+.-|++....   
T Consensus       161 g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr---------~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr  231 (639)
T KOG1130|consen  161 GAFNAEVTSALENAVKFYMENLELSEKLGDR---------LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR  231 (639)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH
Confidence            4444443 33444555555444443333222         2456678899999999999999999998888876433   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHhhhhh
Q 008170          523 ---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---------VRARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       523 ---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~---------~~~~~~~~~~~l~~~~~~i  574 (575)
                         -.++.|+|.||.-+++++.|++.|++.+.+--+         .-..+|..+..+.+|+.||
T Consensus       232 AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI  295 (639)
T KOG1130|consen  232 AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI  295 (639)
T ss_pred             HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence               467999999999999999999999998755221         1156777777778887776

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.55  E-value=0.0033  Score=58.44  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       498 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      ...+.++++.|.+.|.+++++.|+....|+..+....+.|+++.|.+.|++.+++||++..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4568899999999999999999999999999999999999999999999999999998763

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=96.54  E-value=0.012  Score=62.87  Aligned_cols=91  Identities=11%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD-  553 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~-  553 (575)
                      ++.|.........+..|..+|+|+.|+..+.+|+++        .|.-.....+.|..|..+++|.+|+..|++|+.+- 
T Consensus       193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE  272 (508)
T ss_pred             cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            445777788888999999999999999999999998        56566777789999999999999999999999773 


Q ss_pred             ----cccH------HHHHHHHHHHHHhhhh
Q 008170          554 ----KKVR------ARVGYVDCSMLIYLLC  573 (575)
Q Consensus       554 ----P~~~------~~~~~~~~~l~~~~~~  573 (575)
                          ++++      .+++.++...|+|..|
T Consensus       273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA  302 (508)
T KOG1840|consen  273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEA  302 (508)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence                2333      4566666666766543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.50  E-value=0.025  Score=59.48  Aligned_cols=63  Identities=6%  Similarity=0.025  Sum_probs=52.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+..+..+|++++|+..+++.++.+|+++.++..++.+|.+.|+|++|++.+.+..+..+.+.
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~  221 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE  221 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence            477888888888888888888888888888888888888888888888888888877766544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.50  E-value=0.0087  Score=67.68  Aligned_cols=63  Identities=17%  Similarity=0.039  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      .+++.+|.+|-+.|++++|...|+++|+++|+++.+++|+|..|... +.++|+..+.+|++..
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            56667777777777777777777777777777777777777777777 7777777777777653

>TIGR00540 hemY_coli hemY protein

Probab=96.49  E-value=0.023  Score=60.03  Aligned_cols=65  Identities=8%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...+..++++|++++|++.+++.++.+|+++.++...+.++.+.|+|++|++.+.+.++....+.
T Consensus       157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~  221 (409)
T TIGR00540       157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD  221 (409)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            33577788888888888888888888888888888888888888888888888888887644333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.0086  Score=57.80  Aligned_cols=74  Identities=16%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhhh
Q 008170          499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       499 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~~~~~~i  574 (575)
                      +.+..+|++||++.+--.+.+|.+-..+.-+|.||+..++|.+|..+|++..++.|+..+  ++++.+..-|..||
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q--YrlY~AQSLY~A~i   93 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ--YRLYQAQSLYKACI   93 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH--HHHHHHHHHHHhcc
Confidence            467888999999999888889988888889999999999999999999999999887665  55555555555554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.49  E-value=0.022  Score=53.80  Aligned_cols=72  Identities=18%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGC-----------FQQAEEDCSKTIS  551 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~-----------~~~Ai~~~~~al~  551 (575)
                      +-...+.+..|..+++.|+|++|+..|++.++..|++   ..+++.+|.+++++.+           ..+|+..++..++
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            4556778899999999999999999999999999987   5689999999877642           4589999999999


Q ss_pred             hCcccH
Q 008170          552 LDKKVR  557 (575)
Q Consensus       552 l~P~~~  557 (575)
                      ..|+..
T Consensus       119 ~yP~S~  124 (203)
T PF13525_consen  119 RYPNSE  124 (203)
T ss_dssp             H-TTST
T ss_pred             HCcCch
Confidence            999876

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.39  E-value=0.021  Score=55.02  Aligned_cols=79  Identities=14%  Similarity=0.074  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      .+++.+..+++.|+|.+|.+.|.+-++..|++   +.++|=+|.+++.+|+|++|...|..+++-.|+++   ..+..++
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            38999999999999999999999999999986   68899999999999999999999999999998876   4455555


Q ss_pred             HHHHH
Q 008170          565 CSMLI  569 (575)
Q Consensus       565 ~~l~~  569 (575)
                      .++++
T Consensus       223 ~~~~~  227 (262)
T COG1729         223 VSLGR  227 (262)
T ss_pred             HHHHH
Confidence            55443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0092  Score=60.11  Aligned_cols=64  Identities=13%  Similarity=0.114  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P  554 (575)
                      -|+-.+..+|..++|+.|+.+-.|+|+.+|++..+|..+|..+..+++.++|+-.|+.|..+.|
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap  365 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP  365 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence            3444445555555555555555555555555555555555555555555555555555555554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.33  E-value=0.0066  Score=38.40  Aligned_cols=32  Identities=22%  Similarity=0.207  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          525 YYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       525 ~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      +++++|.++.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56777777777777777777777777777753

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.28  E-value=0.017  Score=56.04  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=69.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~  562 (575)
                      -+++....+.+....++|+.++|...|..|+.++|+++.++...|+....-++.-+|-.+|-+||.++|.|.+++..
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            45566667788888999999999999999999999999999999999999999999999999999999998865443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.28  E-value=0.0058  Score=37.68  Aligned_cols=32  Identities=34%  Similarity=0.458  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .+++++|.++..++++++|+..++++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35667777777777777777777777777664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.25  E-value=0.01  Score=45.51  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=41.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA  531 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~  531 (575)
                      |++...+..+|..+++.|+|++|++.|+++++.+|++..+...++.
T Consensus        26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   26 PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5678899999999999999999999999999999999888766554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.23  E-value=0.037  Score=49.08  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~  551 (575)
                      ...+...+..+...|++++|+..+++++.++|.+-.+|..+-.+|..+|++.+|++.|+++.+
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            446667888889999999999999999999999999999999999999999999999998853

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.025  Score=55.26  Aligned_cols=60  Identities=13%  Similarity=0.075  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 008170          505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVD  564 (575)
Q Consensus       505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~  564 (575)
                      .++.+...+.-|..+|+|++-|..+|.+|+.++++..|...|.+++++.|+|+..++-+.
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a  197 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA  197 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            455666778889999999999999999999999999999999999999999996444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.16  E-value=0.0068  Score=39.58  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          525 YYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       525 ~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      +|.++|.+|.++|+|++|++.|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3566777777777777777777775544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.12  E-value=0.0049  Score=48.16  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccH------HHHHHHHHHHHHhhhhh
Q 008170          520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD----KKVR------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       520 p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~----P~~~------~~~~~~~~~l~~~~~~i  574 (575)
                      |+-+.+++++|.+|..+|+|++|+..|++++++.    +++.      ..+|.++..+|++..|+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   66 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEAL   66 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3446789999999999999999999999999762    1222      46777777777777664

...

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.08  E-value=0.02  Score=60.20  Aligned_cols=71  Identities=11%  Similarity=0.055  Sum_probs=47.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHhh
Q 008170          501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA--RVGYVDCSMLIYL  571 (575)
Q Consensus       501 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~--~~~~~~~~l~~~~  571 (575)
                      ..++++++++..++.++..|+++..+..+|..+++.++|++|.+.++++++++|++..  .++.++..+|+-.
T Consensus       306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~  378 (398)
T PRK10747        306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE  378 (398)
T ss_pred             cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence            3467777777777777777777777777777777777777777777777777776552  4555555444433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.06  E-value=0.014  Score=38.06  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLN  519 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~  519 (575)
                      +|.+.|+.+.++|+|++|+++|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47889999999999999999999966553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.05  E-value=0.022  Score=64.58  Aligned_cols=51  Identities=18%  Similarity=0.174  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          507 KAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       507 ~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +++++|.+.+...+.+..+++.+|.||-++|++++|...++++|+++|+|+
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~  150 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP  150 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH
Confidence            444444444444445555555555555555555555555555555555555

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.03  E-value=0.0093  Score=58.32  Aligned_cols=125  Identities=14%  Similarity=0.094  Sum_probs=89.5

Q ss_pred             cccccCCchhHHhHHHHHHHHhhhh-hhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008170          445 FITYHGGDKFLLDTVLDLYDSLQEQ-VNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA  523 (575)
Q Consensus       445 ivg~~~~d~~ll~~a~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~  523 (575)
                      +--.|++=-.++..++..|.....+ +-.+....    -+.++.+.++.--.|..||-.++.+-|+.+|++.|++.-.++
T Consensus       283 ld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v----lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp  358 (478)
T KOG1129|consen  283 LDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV----LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP  358 (478)
T ss_pred             hhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH----HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh
Confidence            5667777778888888776654332 11111111    011233333444456678889999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccH----HHHHHHHHHHHHhhhh
Q 008170          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLD--KKVR----ARVGYVDCSMLIYLLC  573 (575)
Q Consensus       524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~--P~~~----~~~~~~~~~l~~~~~~  573 (575)
                      ++++|.|.|.+.-++++-++..+++++..-  |+..    .++|.+....|++.+|
T Consensus       359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA  414 (478)
T KOG1129|consen  359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA  414 (478)
T ss_pred             HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence            999999999999999999999999999764  3322    5667777777777665

>TIGR00540 hemY_coli hemY protein

Probab=95.98  E-value=0.042  Score=58.06  Aligned_cols=89  Identities=13%  Similarity=0.037  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      |.....+.-.+..+.++|++++|.+.|.++.+..|++. .+...++..++..+++++|+..+++.++.+|++.   ..++
T Consensus       115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~  194 (409)
T TIGR00540       115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE  194 (409)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34455667789999999999999999999999998875 5666779999999999999999999999999998   4677


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++...++|..++
T Consensus       195 ~~~~~~~d~~~a~  207 (409)
T TIGR00540       195 EAYIRSGAWQALD  207 (409)
T ss_pred             HHHHHHhhHHHHH
Confidence            8888888887654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.97  E-value=0.0029  Score=62.31  Aligned_cols=71  Identities=27%  Similarity=0.226  Sum_probs=66.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      +|..+..|.+++.++++.++...|+..|..|++++|+.+.-|--|+.++..+++|++|.+|+..+++++-+
T Consensus       144 np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  144 NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            46678889999999999999999999999999999999999999999999999999999999999999754

>PRK11906 transcriptional regulator; Provisional

Probab=95.97  E-value=0.055  Score=56.19  Aligned_cols=80  Identities=6%  Similarity=-0.103  Sum_probs=66.0

Q ss_pred             ChhHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          485 SIDASELLKEKGNAAFK---------GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~---------~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      +|..+..|--.+.+++.         ..+-.+|.+.-.+|++++|.|+.++..+|.++...++++.|+..+++|+.++||
T Consensus       291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn  370 (458)
T PRK11906        291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD  370 (458)
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence            45666666666666553         344578899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHH
Q 008170          556 VRARVGYVD  564 (575)
Q Consensus       556 ~~~~~~~~~  564 (575)
                      ....++..+
T Consensus       371 ~A~~~~~~~  379 (458)
T PRK11906        371 IASLYYYRA  379 (458)
T ss_pred             cHHHHHHHH
Confidence            986544443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.011  Score=57.04  Aligned_cols=66  Identities=20%  Similarity=0.201  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      .++....+.|...|+.|+|++|++.|+.|++..--++.+-+|.+.|+++.+++..|++...+.++.
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            346778899999999999999999999999999989999999999999999999999988777643

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.028  Score=56.80  Aligned_cols=80  Identities=20%  Similarity=0.143  Sum_probs=71.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      .++.+...|.-+|+.+.+.++.++|+-.|+.|+.+.|-+...|-.+-.||+..+++.||....+.+++.-|++.+.+-.+
T Consensus       329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            34667889999999999999999999999999999999999999999999999999999999999998888877544333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.72  E-value=0.044  Score=55.78  Aligned_cols=73  Identities=21%  Similarity=0.023  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      ..-.+++++.|..+-.+|+.++|+++|-+.-.+--+++.+++..+.+|..+.+..+|++.+.++..+-|+++.
T Consensus       521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~  593 (840)
T KOG2003|consen  521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA  593 (840)
T ss_pred             hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence            3456789999999999999999999998877776789999999999999999999999999999999999884

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.66  E-value=0.03  Score=55.95  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcccHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF-QQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~-~~Ai~~~~~al~l~P~~~~  558 (575)
                      ....+.-++.+++.+|+|++|.+.+.++++.+|+++..+.|+..|...+|+. +.+.+...+.-+.+|+++.
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            4567888999999999999999999999999999999999999999999998 5666788888889999884

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.63  E-value=0.026  Score=56.31  Aligned_cols=69  Identities=25%  Similarity=0.280  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNG--TS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p--~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +..+.+.|..|.+. +++++|+++|.+|+++-.  +.    ..++.+.+.++.++++|++|++.|++.....-++.
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence            44455555555555 666666666666666521  11    34556666666666666666666666666554444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.62  E-value=0.029  Score=56.02  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN  519 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~  519 (575)
                      ...+.+.+..+.+.++|++|++.|++.....
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            3445566777777888888888888877654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.48  E-value=0.13  Score=39.61  Aligned_cols=66  Identities=14%  Similarity=0.176  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ..+....++|..++.+.+.++|+..++++++..++..   .++-.+..+|...|+|.+.++...+=+++
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466778899999999999999999999999877664   45566778889999999999988776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.46  E-value=0.028  Score=35.39  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS  522 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~  522 (575)
                      +++++.|..+++.|++++|++.|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367889999999999999999999999999974

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.41  E-value=0.024  Score=42.74  Aligned_cols=46  Identities=17%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAA  531 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~  531 (575)
                      |++...+...+.++++.|++++|...+.+++..+|+++.++.-++.
T Consensus        22 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen   22 PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            6678899999999999999999999999999999998887776654

...

>smart00028 TPR Tetratricopeptide repeats

Probab=95.37  E-value=0.024  Score=34.67  Aligned_cols=33  Identities=33%  Similarity=0.569  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS  522 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~  522 (575)
                      ..+..+|..++..+++++|+..|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            467889999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.28  E-value=0.028  Score=55.14  Aligned_cols=72  Identities=15%  Similarity=0.061  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...++.|+|.|-++...|++..|-++|+-+|.-|+++.++++|++..-.+.|+.++|...++.+-.+.|+-.
T Consensus       392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence            356889999999999999999999999999999999999999999999999999999999999999999754

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.12  E-value=0.11  Score=41.98  Aligned_cols=50  Identities=16%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       508 Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+..++++++.+|++..+.+.+|..++..|++++|++-+-++++.++++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence            46778899999999999999999999999999999999999999998774

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.07  E-value=0.087  Score=56.06  Aligned_cols=69  Identities=19%  Similarity=0.244  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      ..+.+.+...|+.++|..+++.|...+..-|.|      +....+++.||+++.+.+.|++.+.+|=+.+|.++.
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l  429 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL  429 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence            357789999999999999999999999876544      788999999999999999999999999999999884

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.97  E-value=0.17  Score=45.86  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHHHHH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-----ARVGYVD  564 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~-~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-----~~~~~~~  564 (575)
                      -...+++.+.+.|+|.+|...|.+++. +--+++..+..++++.+..+++.+|...+++..+.+|...     ..+++.+
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            345577777788888888888887774 2346677777777777777777777777777777765432     4455555


Q ss_pred             HHHHHhh
Q 008170          565 CSMLIYL  571 (575)
Q Consensus       565 ~~l~~~~  571 (575)
                      .+.|+|.
T Consensus       171 aa~g~~a  177 (251)
T COG4700         171 AAQGKYA  177 (251)
T ss_pred             HhcCCch
Confidence            5555554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.77  E-value=0.12  Score=51.51  Aligned_cols=61  Identities=18%  Similarity=0.293  Sum_probs=51.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       503 g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      .++++|.-.|++..+..+.++..++..+.|++.+|+|++|.+.+.++++.+|+++..+...
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl  241 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL  241 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            3699999999998887788999999999999999999999999999999999988644443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.13  Score=49.75  Aligned_cols=69  Identities=26%  Similarity=0.358  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+.+.+.=+.+.++++++.|+..-.+.+.++|+++.-+..||.+|.++|.+.-|++|++..++..|+.+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            444556667789999999999999999999999999999999999999999999999999999999877

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.32  E-value=0.59  Score=41.25  Aligned_cols=86  Identities=19%  Similarity=0.108  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC--------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GT--------------SATYYSNRAAAYLELGCFQQAEEDC  546 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~--------------~~~~~~~ra~~~~~l~~~~~Ai~~~  546 (575)
                      .+.+...+......++.++++..+.+++.+-        +.              ...+...++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3455566777778888899999999998763        11              1355777788888999999999999


Q ss_pred             HHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          547 SKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       547 ~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      ++++.++|-+.   ..+-.++...|++..|+
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~  116 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEAL  116 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            99999999876   34444555555555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.26  E-value=0.4  Score=47.74  Aligned_cols=68  Identities=10%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170          494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       494 ~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      .++...+..-.|++||+.|++.+.-+|+...+-.+.+.||+|+.-|+-+.+.++--|+.-|+...+..
T Consensus       156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N  223 (557)
T KOG3785|consen  156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN  223 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence            35556666677999999999999999999999999999999999999999999999999999885433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.26  E-value=0.043  Score=35.25  Aligned_cols=30  Identities=17%  Similarity=0.092  Sum_probs=25.5

Q ss_pred             HHHHHHhCcccH---HHHHHHHHHHHHhhhhhC
Q 008170          546 CSKTISLDKKVR---ARVGYVDCSMLIYLLCIV  575 (575)
Q Consensus       546 ~~~al~l~P~~~---~~~~~~~~~l~~~~~~i~  575 (575)
                      |+++|+++|+++   ..+|.++...|++..|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999   577888888899888764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.20  E-value=0.3  Score=34.86  Aligned_cols=42  Identities=14%  Similarity=0.124  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA  532 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~  532 (575)
                      .++-.+..+++.|+|++|.++.+.+|+++|++..+..-+..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            456788889999999999999999999999998876655444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.09  E-value=0.15  Score=48.86  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=76.2

Q ss_pred             CchhHHhHHHHHHHHhhhhhhh----ccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008170          451 GDKFLLDTVLDLYDSLQEQVNI----ASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY  526 (575)
Q Consensus       451 ~d~~ll~~a~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~  526 (575)
                      +|..|.++|+++-.......+.    +..+..   ++..+.....+.-++++.+.+++|++|......+|..++++++.+
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~---s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL  244 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEEL---SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL  244 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHH---hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence            6778888888876654332110    011111   122334456777899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHH-HHHHHhCcccH
Q 008170          527 SNRAAAYLELGCFQQAEEDC-SKTISLDKKVR  557 (575)
Q Consensus       527 ~~ra~~~~~l~~~~~Ai~~~-~~al~l~P~~~  557 (575)
                      .|.-.+-..+|+..++.+.+ .+....+|+++
T Consensus       245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            99999999999988877654 45556678776

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=93.92  E-value=0.2  Score=53.75  Aligned_cols=69  Identities=10%  Similarity=-0.035  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+.|....+...-+++.++|++.++++|+.-|++..+|..+|+++.++++.+.|.+.|...+++.|+..
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i  719 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI  719 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence            456666777777788889999999999999899999999999999999999999998988888888765

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.89  E-value=0.14  Score=34.14  Aligned_cols=30  Identities=27%  Similarity=0.347  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          523 ATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       523 ~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      +..+.|+|.+|..+|++++|+..+++++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356778888888888888888888888765

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.87  E-value=0.8  Score=38.40  Aligned_cols=61  Identities=11%  Similarity=0.219  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------------SATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ....|...++.|-|++|...|.+|.+....            ++-++.-++-++..+|+|++++...+++|..
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            345677788899999999999999987532            2567888999999999999999999999843

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.66  E-value=0.43  Score=38.74  Aligned_cols=69  Identities=16%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHH
Q 008170          498 AAFKGKQWNKAVNYYSEAIKLNGT---------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--VRARVGYVDCS  566 (575)
Q Consensus       498 ~~~~~g~~~~Ai~~~~~al~~~p~---------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~--~~~~~~~~~~~  566 (575)
                      ...+.++|.+|++.+.+.++....         ...+..+++.++..+|++++|+..+++++++-.+  +...+..+...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~   86 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW   86 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            456889999999998888876422         2467889999999999999999999999988543  33334444433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.62  E-value=0.52  Score=39.15  Aligned_cols=80  Identities=14%  Similarity=0.152  Sum_probs=59.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCcccHHHH
Q 008170          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGC-----------FQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~ra~~~~~l~~-----------~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      ++..++++|++-+|++..++.+...+++.   .++..-|.+++++..           .-.+++.+.++..+.|+....+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56778899999999999999998877664   566777777766532           4568888999999999887655


Q ss_pred             HHHHHH---HHHhhhhh
Q 008170          561 GYVDCS---MLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~---l~~~~~~i  574 (575)
                      ..+...   ...|..|+
T Consensus        82 ~~la~~l~s~~~Ykk~v   98 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAV   98 (111)
T ss_pred             HHHHHHhhhHHHHHHHH
Confidence            555555   55666554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=93.55  E-value=0.16  Score=51.49  Aligned_cols=62  Identities=24%  Similarity=0.365  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      .|.++||+||-.++|++|+++-+.=|.+..      -.+..--|+|..+-.+|.|++|+.+|.+-|.+
T Consensus        57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~  124 (639)
T KOG1130|consen   57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDF  124 (639)
T ss_pred             HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHH
Confidence            344455555555555555544333332210      11233344555555555555555555555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.46  E-value=0.14  Score=50.96  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a  549 (575)
                      ++.+.|  .|-++|..|+|++|+..|+-+.+.+--+.+++.|++-|++-+|.|.||.....++
T Consensus        57 ~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   57 DSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            345555  5788999999999999999999877677899999999999999999999877665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.31  E-value=1.3  Score=40.74  Aligned_cols=68  Identities=18%  Similarity=0.117  Sum_probs=58.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      +.+....+.++|+-|.+.|++++|++.|.++.+.....   ...+++.-.+.+..++|........++-.+
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            35567889999999999999999999999998876432   567888889999999999999999998654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.16  E-value=0.15  Score=33.64  Aligned_cols=30  Identities=30%  Similarity=0.350  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          524 TYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       524 ~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      .+|..+|.+.+..++|++|+.||+++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788889999999999999999998774

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.98  E-value=0.61  Score=47.55  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------------S-----ATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------------~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al  550 (575)
                      .+.....+...|++++|..|+-.|..||++..+             +     .-+--.+..||+++++.+-|+...-+.|
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            344445677788888888888888888887421             1     1235678899999999999999999999


Q ss_pred             HhCcccH---HHHHHHHHHHHHhhhh
Q 008170          551 SLDKKVR---ARVGYVDCSMLIYLLC  573 (575)
Q Consensus       551 ~l~P~~~---~~~~~~~~~l~~~~~~  573 (575)
                      -++|.+.   ...+-+...+.+|..|
T Consensus       256 ~lnP~~frnHLrqAavfR~LeRy~eA  281 (569)
T PF15015_consen  256 NLNPSYFRNHLRQAAVFRRLERYSEA  281 (569)
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHH
Confidence            9999877   3455666667777654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.98  E-value=0.21  Score=52.86  Aligned_cols=58  Identities=14%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170          494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       494 ~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P  554 (575)
                      +++-++|+.++.++|+..++   .+++.+..+..-+|++++++++|++|+..|++.++-+-
T Consensus        84 EKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            44455555555555555554   33344444444455555555555555555555544443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.97  E-value=0.25  Score=32.80  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN  519 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~  519 (575)
                      +..+.+.|..+..+|+|++|+..+.+++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4678899999999999999999999999874

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.86  E-value=0.37  Score=51.18  Aligned_cols=86  Identities=19%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~  562 (575)
                      |++..+++-.-.++.+.++|++|+..    |+.++-   +....+.++.|++++++.++|+.+++-+=+++++--.-+++
T Consensus        43 pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQ  118 (652)
T KOG2376|consen   43 PDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQ  118 (652)
T ss_pred             CCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHH
Confidence            56666777777777888888888732    444432   22333789999999999999999988222222222256788


Q ss_pred             HHHHHHHhhhhhC
Q 008170          563 VDCSMLIYLLCIV  575 (575)
Q Consensus       563 ~~~~l~~~~~~i~  575 (575)
                      +.+.+++|+.|++
T Consensus       119 vlYrl~~ydeald  131 (652)
T KOG2376|consen  119 VLYRLERYDEALD  131 (652)
T ss_pred             HHHHHhhHHHHHH
Confidence            8899999999873

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.80  E-value=1.3  Score=42.63  Aligned_cols=69  Identities=16%  Similarity=0.149  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELG--------CFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~--------~~~~Ai~~~~~al~l~P~~~  557 (575)
                      -+...+.+-.+++.++|++|+...++-+.+.|.+   .-+++.+|++++..-        --.+|+.+++..++.-|+..
T Consensus        71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105          71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            5677889999999999999999999999999876   457899999988752        25788999999999999866

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.76  E-value=2  Score=38.41  Aligned_cols=71  Identities=10%  Similarity=-0.156  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      -...+.+......+.++.+++...+...--+.|+.+.+-..-+..++..++|.+|+..++.+..-.|..+.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~   79 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY   79 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence            34555666666666666666666666666666666666666666666666666666666666655555553

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.75  E-value=0.78  Score=44.16  Aligned_cols=73  Identities=19%  Similarity=0.256  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          491 LLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       491 ~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      .+.++++.+.+    .+++++|.-.|++.-+..|..+...+..+.|++.+++|++|...++.+|..+++++..+.+.
T Consensus       171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            44445554443    45589999999999987788899999999999999999999999999999999999665554

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.65  E-value=0.79  Score=39.41  Aligned_cols=70  Identities=7%  Similarity=0.036  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          489 SELLKEKGNAAFKGKQ---WNKAVNYYSEAIK-LNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~-~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      .+..++.+-.+.+..+   -++-|..++..++ -.|. .-...+.++..++++++|+.++.+++..|+.+|+|.+
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence            3455666666665444   5678899999997 4443 3677888999999999999999999999999999985

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.15  E-value=0.76  Score=51.16  Aligned_cols=84  Identities=14%  Similarity=0.043  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--ARVGYVD  564 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~  564 (575)
                      +..-+..-+|..+++.|++++|..+++..-...+++-..+--+-.||..++++++|+..|+++++.+|+..  ..+..++
T Consensus        41 n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmay  120 (932)
T KOG2053|consen   41 NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAY  120 (932)
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence            33444445788899999999999777766666778888888899999999999999999999999999833  3344444


Q ss_pred             HHHHHh
Q 008170          565 CSMLIY  570 (575)
Q Consensus       565 ~~l~~~  570 (575)
                      ...+.|
T Consensus       121 vR~~~y  126 (932)
T KOG2053|consen  121 VREKSY  126 (932)
T ss_pred             HHHHHH
Confidence            444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=91.31  E-value=0.74  Score=46.66  Aligned_cols=65  Identities=32%  Similarity=0.385  Sum_probs=42.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al  550 (575)
                      .|+++..+...|..+++++.|.+|-..++.|++..| +..-|..+|.++.++|+.++|...+++++
T Consensus       324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            344456666677777777777777777777776654 34456667777777777777777666665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=91.23  E-value=0.86  Score=46.23  Aligned_cols=71  Identities=10%  Similarity=0.001  Sum_probs=60.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHH
Q 008170          499 AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--ARVGYVDCSMLI  569 (575)
Q Consensus       499 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~~~l~~  569 (575)
                      ..+-+++..-++..++.++..|+++.+++.+|..+++.+.|.+|...++.+++..|+..  .-+++.+..+|+
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~  376 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGE  376 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence            35678888999999999999999999999999999999999999999999999998644  445555555444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=91.07  E-value=0.76  Score=49.50  Aligned_cols=72  Identities=15%  Similarity=-0.013  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |.....|..+|..+.++++.+.|-+.|.+.++..|.+..+|..++..-.+.++...|...++++...||++.
T Consensus       682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence            344556788999999999999999999999999999999999999999999999999999999999999987

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.00  E-value=2.5  Score=35.58  Aligned_cols=65  Identities=14%  Similarity=0.073  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIK-------LNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~-------~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ++-.+--+...+...|+|++++..-.++|.       ++.+.    ..+.++|+.++..+|+.++|+..|+++.+.
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            455566678888999999999888877774       44443    556789999999999999999999998654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.94  E-value=0.92  Score=48.69  Aligned_cols=70  Identities=14%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P  554 (575)
                      -|+-+--++.+|..+..+|+.++|++.|++++....+    ...+++.++.++.-+.+|++|..++.+.++.+.
T Consensus       263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK  336 (468)
T ss_pred             CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence            3566777889999999999999999999999954322    256799999999999999999999999998653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.90  E-value=1.5  Score=33.79  Aligned_cols=38  Identities=21%  Similarity=0.181  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSAT  524 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-------~p~~~~  524 (575)
                      +.+..+..++..+-++|+|++|+.+|+++|++       .|++..
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            45677888999999999999999999998864       566654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.87  E-value=1  Score=43.22  Aligned_cols=89  Identities=16%  Similarity=0.148  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI----KLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al----~~~p--~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--  557 (575)
                      +.+.......|...++.|+.+.|...+++.=    +++.  ..-....|.+.+|...++|.+|...+++++..||.++  
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            4556677889999999999999988888433    3332  3356788999999999999999999999999999877  


Q ss_pred             -HHHHHHHHHHHHhhhhh
Q 008170          558 -ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -~~~~~~~~~l~~~~~~i  574 (575)
                       ...+.|+..+|+...||
T Consensus       289 ~NnKALcllYlg~l~DAi  306 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDAL  306 (366)
T ss_pred             hchHHHHHHHHHHHHHHH
Confidence             46677777777776654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.47  E-value=0.58  Score=49.60  Aligned_cols=66  Identities=20%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +.++++.+.+.+-..+|-..+.+++.++-..+..++-.|..|+.+++.+.|++.+++|++++|++.
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCP  710 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence            568899999999999999999999999988899999999999999999999999999999999988

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.12  E-value=1.7  Score=42.59  Aligned_cols=71  Identities=11%  Similarity=-0.000  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------------HHHhCCCCHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSE----------------------------------AIKLNGTSATYYSNRAAA  532 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~----------------------------------al~~~p~~~~~~~~ra~~  532 (575)
                      +........+.++...|+.++|...+..                                  .+..+|++..+.+.++..
T Consensus       166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~  245 (304)
T COG3118         166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQ  245 (304)
T ss_pred             ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3355555666677777777655444333                                  223479999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          533 YLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       533 ~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +...|++++|++.+-..++.|-.+.
T Consensus       246 ~~~~g~~e~Ale~Ll~~l~~d~~~~  270 (304)
T COG3118         246 LHLVGRNEAALEHLLALLRRDRGFE  270 (304)
T ss_pred             HHHcCCHHHHHHHHHHHHHhccccc
Confidence            9999999999999999888876544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=90.07  E-value=2.3  Score=38.96  Aligned_cols=58  Identities=22%  Similarity=0.313  Sum_probs=41.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          498 AAFKGKQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       498 ~~~~~g~~~~Ai~~~~~al~~~p---~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .++..+++++|+..|.+++..+|   .....+..++..+...+++++++..+.++++..++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            67777777777777777777665   34556666666666777777777777777777776

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=89.81  E-value=0.75  Score=48.25  Aligned_cols=72  Identities=21%  Similarity=0.004  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFK---GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~---~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +.....|-+++.++++   .|+.-.|+.....|++++|....+++.++.++..++++.+|+++...+....|.+.
T Consensus       405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            5556677788888877   35667899999999999999999999999999999999999998888888888554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=88.81  E-value=4.1  Score=37.28  Aligned_cols=69  Identities=28%  Similarity=0.343  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .....+...+..+...+++++|+..+.++++..+. ....+.+++.++...+++++|+..+.+++...|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            34555666666677888888888888888888888 6888888888888888888888888888888876

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=88.79  E-value=2.9  Score=38.17  Aligned_cols=84  Identities=8%  Similarity=-0.032  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCcccH-HHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT----ISLDKKVR-ARVGYV  563 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a----l~l~P~~~-~~~~~~  563 (575)
                      +.-..-.|..+-.+|+|++|...|+.++...|. +.+....+.-+.++|+..+|-..+...    .+-.|.+. ..++.+
T Consensus       160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~  238 (251)
T COG4700         160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWI  238 (251)
T ss_pred             CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            334455677888888888888888888888764 555666677788888777766554443    33344433 345556


Q ss_pred             HHHHHHhhhh
Q 008170          564 DCSMLIYLLC  573 (575)
Q Consensus       564 ~~~l~~~~~~  573 (575)
                      ..+-++..++
T Consensus       239 ~~A~~~~~qs  248 (251)
T COG4700         239 KTANERLKQS  248 (251)
T ss_pred             HHHHHHHHhh
Confidence            5555554443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.65  E-value=1.9  Score=39.75  Aligned_cols=67  Identities=15%  Similarity=0.048  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      -.-.+.+.+.+++|++++|+..++..-.- ...+..--.||.+++..|+-++|...|+++++.+++..
T Consensus       127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         127 LAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            34456899999999999999887654322 12345567799999999999999999999999986544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.25  E-value=3.5  Score=39.10  Aligned_cols=66  Identities=24%  Similarity=0.189  Sum_probs=40.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLE-LGCFQQAEEDCSKTISL  552 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~-l~~~~~Ai~~~~~al~l  552 (575)
                      .+.+..|-+.+|+| +..+.++|++++.++|++--+-      +..+...|..|.. +.++++||.+|+++-+.
T Consensus        71 hDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   71 HDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             hhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            34455555555544 4457888888888888774332      3334456666664 37777777777777554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.99  E-value=2.2  Score=42.51  Aligned_cols=72  Identities=15%  Similarity=0.072  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |.+..+++---..+|-.|+...-...+.+.+.. +++.   .-+.-..+.++...|-|++|.+..++++++|+.+-
T Consensus       134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~  209 (491)
T KOG2610|consen  134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC  209 (491)
T ss_pred             chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch
Confidence            455555665666666677777666777776665 5555   33344556666677777777777777777777544

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.77  E-value=2  Score=27.92  Aligned_cols=30  Identities=13%  Similarity=0.314  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCC
Q 008170          491 LLKEKGNAAFKGKQWNKAVNY--YSEAIKLNG  520 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~--~~~al~~~p  520 (575)
                      .+...|-.++.+|+|++|++.  |.-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            344445555555555555555  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.62  E-value=0.98  Score=29.76  Aligned_cols=30  Identities=13%  Similarity=0.469  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN  519 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~  519 (575)
                      +.|..+|..-+..++|++|+..|.+++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.58  E-value=0.99  Score=49.75  Aligned_cols=87  Identities=26%  Similarity=0.368  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHH--
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLEL--GCFQQAEEDCSKTISLDKKVRA--  558 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l--~~~~~Ai~~~~~al~l~P~~~~--  558 (575)
                      ..+..++..||.+|+.++|.+|...|..++.+-|.+    +..+.|.+.||+.+  ++|.+++.+++-++...|..-+  
T Consensus        51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L  130 (748)
T KOG4151|consen   51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL  130 (748)
T ss_pred             HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence            335556677788888888888777777777776632    55677777777654  5777888888888877776552  


Q ss_pred             -HHHHHHHHHHHhhhh
Q 008170          559 -RVGYVDCSMLIYLLC  573 (575)
Q Consensus       559 -~~~~~~~~l~~~~~~  573 (575)
                       .+.+++.++.++.++
T Consensus       131 l~r~~~y~al~k~d~a  146 (748)
T KOG4151|consen  131 LKRARKYEALNKLDLA  146 (748)
T ss_pred             hhhhhHHHHHHHHHHH
Confidence             233455555554443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=87.41  E-value=3.4  Score=33.20  Aligned_cols=62  Identities=10%  Similarity=0.054  Sum_probs=40.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDC  546 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~~ra~~~~~l~~~~~Ai~~~  546 (575)
                      +|++....+..+..++..|+|++|++.+-+.++.++++  -.+.-.+=.++..+|.-+.....|
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~   81 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY   81 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence            47788999999999999999999999999999998765  333333334444444433333333

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=87.11  E-value=0.95  Score=45.38  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-HHHHHHHH
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-ARVGYVDC  565 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-~~~~~~~~  565 (575)
                      .-.|+++...+.|+++++.|++|+++.-++      ..++..++..|-.++++++|+-...+|.++--+.. ..+...+.
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr  205 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR  205 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence            347888889999999999999999885332      45788999999999999999999999998855433 33334444


Q ss_pred             HHHHhhhhh
Q 008170          566 SMLIYLLCI  574 (575)
Q Consensus       566 ~l~~~~~~i  574 (575)
                      ++..|.+++
T Consensus       206 ~~~lyhmaV  214 (518)
T KOG1941|consen  206 AMSLYHMAV  214 (518)
T ss_pred             HHHHHHHHH
Confidence            444454443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.91  E-value=2.1  Score=27.79  Aligned_cols=33  Identities=21%  Similarity=0.197  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCccc
Q 008170          524 TYYSNRAAAYLELGCFQQAEED--CSKTISLDKKV  556 (575)
Q Consensus       524 ~~~~~ra~~~~~l~~~~~Ai~~--~~~al~l~P~~  556 (575)
                      +.++..|..+...|++++|++.  |.-+..++++|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4577889999999999999999  55888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.80  E-value=2.7  Score=41.27  Aligned_cols=60  Identities=12%  Similarity=0.093  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK  548 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~  548 (575)
                      .+....++......+++.+|...|..+++.+|++..+...++.||...|+.++|...+..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            344566888999999999999999999999999999999999999999999888776554

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=86.80  E-value=0.44  Score=47.58  Aligned_cols=67  Identities=19%  Similarity=0.141  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...+.+...++.+.|..|+..-..+++.++....+++.|++.++.+.++++|++++..+.+.+|++.
T Consensus       277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~  343 (372)
T KOG0546|consen  277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK  343 (372)
T ss_pred             cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence            3445777888999999999999999998889999999999999999999999999999999999877

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=86.61  E-value=2.6  Score=44.33  Aligned_cols=60  Identities=17%  Similarity=0.114  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~ra~~~~~l~~~~~Ai~~~~~al  550 (575)
                      .-...+.++.+.|+.++|++.|...++..|.  +..++.|+-.+++.+++|.++...+.|-=
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            4456899999999999999999999988775  46799999999999999999988777753

The molecular function of this protein is uncertain.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=86.52  E-value=2.3  Score=37.30  Aligned_cols=51  Identities=16%  Similarity=0.177  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF  539 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~  539 (575)
                      .+...+++..++.+|+|.-|++..+.++..+|++..+..-++.++.+++.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            456778899999999999999999999999999999999999988777643

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.30  E-value=9.9  Score=33.52  Aligned_cols=68  Identities=12%  Similarity=-0.071  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ..+.+.........+.+++...+...--+.|+.+.+-.--+..++..|+|.+|+..++....-.+..+
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p   78 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP   78 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence            34444444555555666655555555555666666666666666666666666666666555544444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.26  E-value=1.1  Score=26.52  Aligned_cols=23  Identities=26%  Similarity=0.015  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 008170          525 YYSNRAAAYLELGCFQQAEEDCS  547 (575)
Q Consensus       525 ~~~~ra~~~~~l~~~~~Ai~~~~  547 (575)
                      +++++|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666665544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PLN03218 maturation of RBCL 1; Provisional

Probab=84.28  E-value=5.6  Score=47.13  Aligned_cols=63  Identities=13%  Similarity=0.032  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ..|...-..|.+.|++++|++.|++..+.+ +.+...|+.+...|.+.|++++|++.|++..+.
T Consensus       580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            445556666777777777777777777665 345566777777777777777777777776654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.08  E-value=6.4  Score=38.77  Aligned_cols=65  Identities=15%  Similarity=0.088  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ....+..+...+...++++.++..+++.+..+|-+-.+|..+-.+|++.|+...|+..|++.-++
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            35677888999999999999999999999999999999999999999999999999999998663

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=83.81  E-value=6.2  Score=41.02  Aligned_cols=62  Identities=18%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a  549 (575)
                      ++.......+.-+|.+|+|.++..+-....+++| ++.+|.-+|.|.+..++|+||-.++...
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            3444555677778999999999999999999999 9999999999999999999999877543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.77  E-value=1.5  Score=45.74  Aligned_cols=70  Identities=13%  Similarity=0.094  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIK-L--------N---------GTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~-~--------~---------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a  549 (575)
                      ....|.|.|..+|+.+.|.-++.+|.+|++ .        .         -+..++.||.|..|+..|++-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            456678999999999999999999999996 1        1         123678999999999999999999999999


Q ss_pred             HHhCcccH
Q 008170          550 ISLDKKVR  557 (575)
Q Consensus       550 l~l~P~~~  557 (575)
                      ++.--.++
T Consensus       362 v~vfh~nP  369 (696)
T KOG2471|consen  362 VHVFHRNP  369 (696)
T ss_pred             HHHHhcCc
Confidence            87755555

>PRK04841 transcriptional regulator MalT; Provisional

Probab=83.00  E-value=4.6  Score=47.35  Aligned_cols=63  Identities=13%  Similarity=-0.052  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ......+..++..|++++|...+.++++..+..     ..++.+++.++...|++++|...+++++..
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~  520 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM  520 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334446677777777777777777777644332     234566777777777777777777777755

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.79  E-value=7.5  Score=36.91  Aligned_cols=67  Identities=19%  Similarity=0.136  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          487 DASELLKEKGNAAFKGKQ-------WNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~-------~~~Ai~~~~~al~~~p------~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      +.+..+...+-.|..+++       +.+|++.|.++++.+.      +...+.+..|..+.++|++++|+..+.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            556666666666666666       4667777777776542      236788999999999999999999999999763

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.51  E-value=4.8  Score=39.60  Aligned_cols=60  Identities=17%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 008170          508 AVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSM  567 (575)
Q Consensus       508 Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l  567 (575)
                      |..+|.+|+.+.|++-..|+.+|.++...++.-+|+-.|-|++...--+..+...+...+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf   60 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF   60 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999865433444444444333

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=82.38  E-value=12  Score=31.73  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----HH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------------ATYYSNRAAAYLELGCFQQAEEDCSKT----IS  551 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~ra~~~~~l~~~~~Ai~~~~~a----l~  551 (575)
                      .+...|+..++++++-.++-+|++|+.+..+-               ...-.|+|..+..+|+.+=.+++++-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999763211               233678999999999999889887654    56


Q ss_pred             hCcccH--------HHHHHHHHHHHHhh
Q 008170          552 LDKKVR--------ARVGYVDCSMLIYL  571 (575)
Q Consensus       552 l~P~~~--------~~~~~~~~~l~~~~  571 (575)
                      +-|+.+        ..+|-+..++.+|.
T Consensus        83 LiPQCp~~~C~afi~sLGCCk~ALl~F~  110 (140)
T PF10952_consen   83 LIPQCPNTECEAFIDSLGCCKKALLDFM  110 (140)
T ss_pred             hccCCCCcchHHHHHhhhccHHHHHHHH
Confidence            667644        34555555555554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=82.15  E-value=9  Score=38.06  Aligned_cols=70  Identities=11%  Similarity=0.112  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          488 ASELLKEKGNAAFK-GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       488 ~a~~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ....|...+...++ .++.+.|...|+.+++.-|.+...|......+.++++.+.|...|++++..-|...
T Consensus        34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence            35678888888777 67777799999999999999999999999999999999999999999997755433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=81.76  E-value=18  Score=32.47  Aligned_cols=69  Identities=13%  Similarity=0.020  Sum_probs=56.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      |+..+.-.-.|..+.+.|+|.+|+..++...+-.|..+.+-..++.|+..+++..= ..+.+++++..++
T Consensus        41 P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~d  109 (160)
T PF09613_consen   41 PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGAD  109 (160)
T ss_pred             CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCCC
Confidence            44455566689999999999999999999999899999888899999999988543 3446777877653

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.60  E-value=11  Score=29.31  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~  518 (575)
                      ...+..+..+|..+-+.|+|++|+.+|.++|+.
T Consensus         3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            345777888999999999999999999998864

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=81.38  E-value=3.9  Score=30.88  Aligned_cols=32  Identities=28%  Similarity=0.357  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~  518 (575)
                      +.+..+.++|..+-+.|+|++|+++|+++++.
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            35667788888888999999999999988864

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.31  E-value=13  Score=34.92  Aligned_cols=63  Identities=11%  Similarity=0.034  Sum_probs=57.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      -...+++.+..++||....+-++-+|.++.....+-+.+.-.|+|++|...++-+-+++|++.
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            345678899999999999999999999999888888999999999999999999999999876

>PLN03218 maturation of RBCL 1; Provisional

Probab=80.64  E-value=9.9  Score=45.11  Aligned_cols=58  Identities=19%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKLN-GTSATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al  550 (575)
                      ......|.+.|++++|++.|++..+.. ..+...|+.+...|.+.|++++|++.+++..
T Consensus       688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            333444444444444444444443321 1123344444455555555555555555443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=80.53  E-value=4.1  Score=46.30  Aligned_cols=56  Identities=16%  Similarity=0.073  Sum_probs=32.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~  551 (575)
                      ....+.|.+.|++++|.+.|++..+   .+...|+.+...|.+.|+.++|++.+++.++
T Consensus       364 ~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        364 TALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIA  419 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555566666666666655432   2344566666666666666666666666554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=80.27  E-value=4.3  Score=46.13  Aligned_cols=64  Identities=9%  Similarity=-0.080  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ...|......+.+.|+++.|...+++.++++|++...|..+..+|.+.|++++|.+.+++..+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            3456677777778888888888888888888887777888888888888888888887776544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=80.26  E-value=6.5  Score=42.23  Aligned_cols=74  Identities=12%  Similarity=0.057  Sum_probs=61.1

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHHhhhh
Q 008170          501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-------ARVGYVDCSMLIYLLC  573 (575)
Q Consensus       501 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-------~~~~~~~~~l~~~~~~  573 (575)
                      ...+.+.|.+.+.+..+.-|+....++..|..+...|+.++|++.+++++....++.       .-++.++..+.+|..|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            356678899999999999999999999999999999999999999999996544433       4566667777777766


Q ss_pred             h
Q 008170          574 I  574 (575)
Q Consensus       574 i  574 (575)
                      .
T Consensus       325 ~  325 (468)
T PF10300_consen  325 A  325 (468)
T ss_pred             H
Confidence            4

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=80.11  E-value=12  Score=40.21  Aligned_cols=80  Identities=15%  Similarity=-0.112  Sum_probs=63.1

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcccHHHHH
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK-TISLDKKVRARVG  561 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~-al~l~P~~~~~~~  561 (575)
                      +.+++-....+ +...+...++...++......+..+|++..++.|++.+....+....++.+..+ +.+..|+|...++
T Consensus        62 ~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~  140 (620)
T COG3914          62 DVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG  140 (620)
T ss_pred             CCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence            34455545555 677778888899999999999999999999999999999988877776666666 8999999885444


Q ss_pred             HH
Q 008170          562 YV  563 (575)
Q Consensus       562 ~~  563 (575)
                      ..
T Consensus       141 ~~  142 (620)
T COG3914         141 HL  142 (620)
T ss_pred             hH
Confidence            44

>PRK04841 transcriptional regulator MalT; Provisional

Probab=80.10  E-value=5.5  Score=46.71  Aligned_cols=65  Identities=12%  Similarity=0.035  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG------TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .+...+..+...|++++|+..|+++++...      ....++..+|.++.++|++++|...+.+++++...
T Consensus       693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            356788999999999999999999998632      23567889999999999999999999999988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	575
2dc0_A	434	Crystal Structure Of Amidase Length = 434		1e-23
3h0l_A	478	Structure Of Trna-Dependent Amidotransferase Gatcab		5e-19
3kfu_E	471	Crystal Structure Of The Transamidosome Length = 47		7e-19
4gyr_A	621	Granulibacter Bethesdensis Allophanate Hydrolase Ap		3e-17
3al0_A	475	Crystal Structure Of The Glutamine Transamidosome F		8e-17
2df4_A	485	Structure Of Trna-Dependent Amidotransferase Gatcab		9e-17
2gi3_A	476	Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf		2e-14
3a1i_A	521	Crystal Structure Of Rhodococcus Sp. N-771 Amidase		1e-13
3a1k_A	521	Crystal Structure Of Rhodococcus Sp. N771 Amidase L		1e-13
1obl_A	414	Crystal Structure Of The S133a Mutant Of Malonamida		1e-12
1o9o_A	414	Crystal Structure Of The S131a Mutant Of Malonamida		1e-12
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		2e-12
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-12
1obk_A	414	Crystal Structure Of The R158q Mutant Of Malonamida		9e-12
1ock_A	412	The Crystal Structure Of Malonamidase E2 From Brady		9e-12
1o9q_A	414	Crystal Structure Of The S155c Mutant Of Malonamida		1e-11
1obj_A	414	Crystal Structure Of The T150a Mutant Of Malonamida		3e-11
1o9n_A	414	Crystal Structure Of The K62a Mutant Of Malonamidas		4e-11
1wao_1	477	Pp5 Structure Length = 477		5e-11
1obi_A	414	Crystal Structure Of The G130a Mutant Of Malonamida		1e-10
1m21_A	503	Crystal Structure Analysis Of The Peptide Amidase P		1e-10
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		7e-10
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		8e-09
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		1e-08
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		4e-08
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		9e-08
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		9e-08
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		3e-07
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		3e-07
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-07
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		6e-07
3a2q_A	493	Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas		6e-07
3fwv_A	128	Crystal Structure Of A Redesigned Tpr Protein, T-Mo		8e-07
3a2p_A	493	Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas		8e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-05
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		5e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		6e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		6e-05
2wap_A	543	3d-Crystal Structure Of Humanized-Rat Fatty Acid Am		3e-04
2wj1_A	573	3d-Crystal Structure Of Humanized-Rat Fatty Acid Am		3e-04
2vya_A	587	Crystal Structure Of Fatty Acid Amide Hydrolase Con		3e-04
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		5e-04

>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 159/388 (40%), Gaps = 33/388 (8%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L GL   +KD+F VKG  T  G+   K         A  V  L + GA    KT   E A
Sbjct: 65  LHGLPLTVKDLFPVKGMPTRAGT---KAPLPPLPEEARAVRRLREAGALLFAKTNXHEIA 121
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
            GITGEN   G   N   PS                 +   +LGTDT G +R+PA F G+
Sbjct: 122 LGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGV 181
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
           +G++PS+G VS+ G LP S+S D  G L R+     R  H L +            I A 
Sbjct: 182 VGFKPSYGRVSLEGALPLSRSTDHAGPLTRSV----RDAHFLTE------------ILAG 225
Query: 253 DIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGT 312
           +   L  V       V    ++ L G    E       +  ++P+L+    + + P    
Sbjct: 226 ESIPLEGVQN----PVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP---- 277
Query: 313 ATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRN 372
             L+ +  V   L RYE   I+E+ +K         V E +L  +  T+ + +     R 
Sbjct: 278 --LEGVYEVYTRLVRYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAERE 335
Query: 373 EMRAALQRLLKDDKILVIPT--VSDPPLKLNTKKTYSAEFHDRT--LVLSSIGSMSGCCQ 428
            +R  L + L+    L++P   +  PPL     +  S     R   + L+   S+ G   
Sbjct: 336 ALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPT 395
Query: 429 VAIPIGKYNEHPISISFITYHGGDKFLL 456
           +A+P  K    P+ +  +  +G D  +L
Sbjct: 396 LALPFAKVEGXPVGLQVVGAYGEDGKVL 423

>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 165/410 (40%), Gaps = 40/410 (9%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  A+KD   V+G  T   S     ++  A   A V+  L K GA  +GKT LDEFA
Sbjct: 64  LFGIPIAVKDNILVEGEKTTCASKI--LENFVAPYDATVIERLKKAGALIVGKTNLDEFA 121
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
            G + E   +    NP     +P                  +LG+DT G +R PASFCG+
Sbjct: 122 MGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGV 181
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRAR------ 246
           +G +P++G VS  G++  + SLD +G+  R    +  V  V+   +  +   A+      
Sbjct: 182 IGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEW 241
Query: 247 -----------RLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQ----YI 291
                      ++    + F+    P++K      +A E+       E   + +    ++
Sbjct: 242 SEEVKKEVKGLKIGLPKEFFEYELQPQVK------EAFENFIKELEKEGFEIKEVSLPHV 295
Query: 292 ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFE 351
             ++P+   +     +P   ++ L     V    +  E+K I+E + ++     G  V  
Sbjct: 296 KYSIPTYYII-----APSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKR 350
Query: 352 RVLEAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY 406
           R++             Y     KVR  +     +  ++  ++  PT    P K   +   
Sbjct: 351 RIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAFEEVDVIASPTTPTLPFKFGERLEN 410
Query: 407 SAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLL 456
             E +  + +L+   +++G   ++IPI   +  P+    I  H  +  LL
Sbjct: 411 PIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLL 459

>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 172/427 (40%), Gaps = 61/427 (14%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           LAGL  A+KD    +G  T  GS   +      E TAV     L  GA  +GKT LDEF 
Sbjct: 58  LAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKAL--GALVLGKTNLDEFG 115
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
            G + E+  +    NP  P  +P              L   ALG+DT G VR PA+FCG+
Sbjct: 116 MGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGV 175
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
            G +P++G VS  G++  + SLD +G +AR+   L      LL   A  P          
Sbjct: 176 YGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDL-----ALLMDAAAGPDPL------- 223
Query: 253 DIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMN-VGQYIASNVPSLK------------ 299
           D   L   P+ +         E+L G   P  +  V + +A N P ++            
Sbjct: 224 DATSLDLPPRFQ---------EALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRE 274
Query: 300 -GLRAQSTSPENGTATLKAL-----SSVMLSLQRYEFKTIY---------EEWVKSAKPR 344
            GL  +  S  +    L A      +    +L RY+  T+Y         E  +++ +  
Sbjct: 275 LGLSVREVSWPSLPQALAAYYILAPAEASSNLARYD-GTLYGRRAAGEEVEGMMEATRAL 333
Query: 345 LGYNVFERVLEAINTTQDNIKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLK 399
            G  V  RVL             Y       R  ++A  Q L ++  +L++PT   P   
Sbjct: 334 FGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFP 393
Query: 400 LNTKKTYSAEFHDRTLVLSSIGS-MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDT 458
              ++   A + +    L ++G+ ++G   ++ P G     P+ +  +   G D+ LL  
Sbjct: 394 FGARRDPLAMYRED---LYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRA 450
Query: 459 VLDLYDS 465
            L   ++
Sbjct: 451 ALAFEEA 457

>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+ FA+KD  DV G       P +    +E +R A VV  L   GA  +GKT LD+FA
Sbjct: 95  LYGVPFAVKDNIDVAGLPCSAACPAFT---YEPDRDATVVARLRAAGAIVLGKTNLDQFA 151
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
            G+ G    +G P       +I               LV F+LGTDT G  RVPA+F  +
Sbjct: 152 TGLVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAFNNL 211
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP 242
           +G +P+ G +S  GV+P  +SLD V + A + +    +  +    +A +P
Sbjct: 212 VGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRRIAEGYDAADP 261

>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 179/428 (41%), Gaps = 30/428 (7%)
Query: 75  GLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG 134
           G+  AIKD     G  T   S     +++E+   A VV  + + G   +GK  LDEFA G
Sbjct: 60  GIPVAIKDNILTLGMRTTCASRIL--ENYESVFDATVVKKMKEAGFVVVGKANLDEFAMG 117
Query: 135 ITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILG 194
            + E   +    NP     +P              +V  ALG+DT G VR PAS CG++G
Sbjct: 118 SSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVG 177
Query: 195 YRPSHGTVSMIGVLPNSQSLDTVGLL---ARNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           Y+P++G VS  G++  + SLD +G +    R+A+IL  +     + +A      R++ F 
Sbjct: 178 YKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVN--RKVDFL 235
Query: 252 DDIFQ-LSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQST---- 306
            +I + +S +       +    IE     +  E + + + + + V  +K    + +    
Sbjct: 236 SEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATY 295
Query: 307 ---SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDN 363
              +P   ++ L     V   L R + K + E ++K+     G  V  R++    T    
Sbjct: 296 YVIAPAEASSNLARFDGVKYGL-RIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAA 354
Query: 364 IKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKL-NTKKTYSAEFHDRTLVL 417
               Y     KVR ++   L  +L     ++ PT      K+   K   +    D   + 
Sbjct: 355 YYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMD---IF 411
Query: 418 SSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-L 476
           +   +++G   +++P G  N  P+ +  I    G +F    V  +  ++++      N +
Sbjct: 412 TIPANLAGLPAISVPFGFSNNLPVGVQVI----GRRFADGKVFRIARAIEKNSPYNENGM 467
Query: 477 VPLPDTNG 484
            PLP+   
Sbjct: 468 FPLPEVKA 475

>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 149/370 (40%), Gaps = 50/370 (13%)
Query: 109 AVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXX 168
           + V+  L K  A  IGK  +DEFA G + E  ++   VNP     +P             
Sbjct: 105 STVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAA 164
Query: 169 QLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLAR----NA 224
            LV  +LG+DT G +R PA++CG++G +P++G VS  G++  + SLD +G L R    NA
Sbjct: 165 GLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNA 224
Query: 225 SILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEH 284
            +L  +    +  +   P         DD+   S+         I K I+ L      E+
Sbjct: 225 IVLEAISGADVNDSTSAP--------VDDVDFTSE---------IGKDIKGLKVALPKEY 267
Query: 285 M------NVGQYIASNVPSLKGLRA--QSTSPEN---------------GTATLKALSSV 321
           +      +V + + + V +LK L A  +  S  N                ++ L     +
Sbjct: 268 LGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGI 327
Query: 322 MLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILY-----KVRNEMRA 376
                  E  ++ E +  S     G  V  R+              Y     KVR  ++ 
Sbjct: 328 RYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKN 387
Query: 377 ALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY 436
              ++ ++  ++V PT       L  +       +   L+ + + +++G   +++P G+ 
Sbjct: 388 DFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPV-NLAGLPGISVPCGQS 446
Query: 437 NEHPISISFI 446
           N  PI + FI
Sbjct: 447 NGRPIGLQFI 456

>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 172/424 (40%), Gaps = 28/424 (6%)
Query: 75  GLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG 134
           G+  AIKD     G  T   S     +++E+   A VV    + G   +GK  LDEFA G
Sbjct: 61  GIPVAIKDNILTLGXRTTCASRIL--ENYESVFDATVVKKXKEAGFVVVGKANLDEFAXG 118
Query: 135 ITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGILG 194
            + E   +    NP     +P               V  ALG+DT G VR PAS CG++G
Sbjct: 119 SSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPASLCGVVG 178
Query: 195 YRPSHGTVSMIGVLPNSQSLDTVGLLA---RNASILHRVGHVLLQLNAVEPRRARRLIFA 251
           Y+P++G VS  G++  + SLD +G +    R+A+IL  +     + +A      R++ F 
Sbjct: 179 YKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDENDATTVN--RKVDFL 236
Query: 252 DDIFQLSKVPKLKTIHVISK-AIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQST---- 306
            +I +     K      I +  IE     +  E + + + + + V  +K    + +    
Sbjct: 237 SEIEEGVSGXKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVATY 296
Query: 307 ---SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDN 363
              +P   ++ L     V   L R + K + E + K+     G  V  R+     T    
Sbjct: 297 YVIAPAEASSNLARFDGVKYGL-RIKEKGLREXYXKTRNVGFGEEVRRRIXIGTFTLSAA 355
Query: 364 IKILY-----KVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLS 418
               Y     KVR ++   L  +L     ++ PT      K+   K     +      + 
Sbjct: 356 YYEAYFNKAXKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLXDIFTIP 415
Query: 419 SIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-LV 477
           +  +++G   +++P G  N  P+ +  I    G +F    V  +  ++++      N   
Sbjct: 416 A--NLAGLPAISVPFGFSNNLPVGVQVI----GRRFADGKVFRIARAIEKNSPYNENGXF 469
Query: 478 PLPD 481
           PLP+
Sbjct: 470 PLPE 473

>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G + AIKD   V G     GS     +     R A VVT LL  GAT  GK V ++  
Sbjct: 88  LTGRRVAIKDNVTVAGVPMMNGS--RTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F  +      G   NP                      VDFA+G D  G +R+PA+FCG+
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFCGV 205
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
           +G++P+ G V   G  P  +++D +G + R       +  V+   +  +PR+A  +   D
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265

>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G + AIKD   V G     GS     +     R A VVT LL  GAT  GK V ++  
Sbjct: 88  LTGRRVAIKDNVTVAGVPMMNGS--RTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F  +      G   NP                      VDFA+G D  G +R+PA+FCG+
Sbjct: 146 FSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGV 205
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFAD 252
           +G++P+ G V   G  P  +++D +G + R       +  V+   +  +PR+A  +   D
Sbjct: 206 VGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEAGD 265

>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
           P  +G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+
Sbjct: 4   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63
Query: 540 QQAEEDCSKTISLDKK 555
             A  D ++ I LDKK
Sbjct: 64  GYALGDATRAIELDKK 79

>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALG  T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   I D+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIADIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
           G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+  A 
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60
Query: 544 EDCSKTISLDKK 555
            D ++ I LDKK
Sbjct: 61  GDATRAIELDKK 72

>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+   IKD+ D     T  GS  ++    +    A VV +L + GAT IGKT    FA
Sbjct: 54  LRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFA 111
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
                 ++     +NP    H P              ++  ALGT T G V  PA++CG 
Sbjct: 112 ------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGT 165
Query: 193 LGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHR 229
              +PS   +  +GV   S +LDTVGL    A  L R
Sbjct: 166 AAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLAR 202

>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 22/163 (13%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGS-------PDWKRDHHEAERTAVVVTLLLKNGATCIGK 125
           L G+   +KD  +     T  GS       PD           A +V  L   GA  +GK
Sbjct: 78  LHGIPLLLKDNINAAPMATSAGSLALQGFRPD----------DAYLVRRLRDAGAVVLGK 127
Query: 126 TVLDEFAF-----GITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTI 180
           T L E+A       I+G +   G   NP   SH P              L   A+GT+T 
Sbjct: 128 TNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETD 187
Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN 223
           G +  PA+  G++G +P+ G VS  G++P S S DT G +AR+
Sbjct: 188 GSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARS 230

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
           PL     S +A E LK +GN   K + +  AV++Y +AI+LN  +A Y+ NRAAAY +LG
Sbjct: 2   PLGSEEDSAEA-ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG 60
Query: 538 CFQQAEEDCSKTISLD---KKVRARVGYVDCSM 567
            +  A +DC + I +D    K   R+G    S+
Sbjct: 61  NYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D + ++K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 547 SKTISLD 553
            + I L+
Sbjct: 74  EECIQLE 80

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
           +N   DA+   K+ GNAA+K K + KA  +Y +AI+L+ ++ T+Y+N+AA Y E   F +
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 542 AEEDCSKTISLDKKVRA 558
             + C K + + ++ RA
Sbjct: 61  CVQFCEKAVEVGRETRA 77

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/61 (49%), Positives = 39/61 (63%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LKEKGN A      + A+  YSEAIKL+  +   YSNR+AAY + G +Q+A ED  KT+ 
Sbjct: 7   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 552 L 552
           L
Sbjct: 67  L 67

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC 
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 548 KTISLD-KKVRARVGYVDCSM 567
           + + LD + V+A      C +
Sbjct: 68  RALELDGQSVKAHFFLGQCQL 88

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           K KGN  FK   +  A+ +Y+EA+K +  +A  YSNRAA   +L  FQ+A +DC   I L
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 553 DKK 555
           D K
Sbjct: 77  DSK 79

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + +  E C K I +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 553 DKKVR 557
            ++ R
Sbjct: 68  GRENR 72

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + +  E C K I +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 553 DKKVR 557
            ++ R
Sbjct: 68  GRENR 72

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 548 KTISLD-KKVRARVGYVDCSM 567
           + + LD + V+A      C +
Sbjct: 63  RALELDGQSVKAHFFLGQCQL 83

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
           P +      S+ LK +GNAA   K+++KA++ Y++A+ +   +  Y SNRAAAY   G  
Sbjct: 2   PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH 61
Query: 540 QQAEEDCSKTISLDKK 555
           ++A ED      +D K
Sbjct: 62  EKAAEDAELATVVDPK 77

>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 73  LAGLKFAIKDVFDV-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
            AG+ + +KD+  V +G +        K   + A+  A  V  +   G   +GKT   E 
Sbjct: 64  FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEM 123
Query: 132 AFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCG 191
              +T E + +G   NP                     L   A G D  G VR+PAS CG
Sbjct: 124 GNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCG 183
Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTV---GLLARN----ASIL-----HRVGHVLLQLNA 239
           ++G +P+ G +S   ++ +S ++      GL AR+    A++L     HR G       A
Sbjct: 184 VVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTA 243
Query: 240 VEP 242
             P
Sbjct: 244 SRP 246

>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           KE GN A+K K ++ A+ +Y +A +L+ T+ TY  N+AA Y E G + +  E C K I +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 553 DKKVR 557
            ++ R
Sbjct: 68  GRENR 72

>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 73  LAGLKFAIKDVFDV-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
            AG+ + +KD+  V +G +        K   + A+  A  V  +   G   +GKT   E 
Sbjct: 64  FAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEM 123
Query: 132 AFGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCG 191
              +T E + +G   NP                     L   A G D  G VR+PAS CG
Sbjct: 124 GNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVCG 183
Query: 192 ILGYRPSHGTVSMIGVLPNSQSLDTV---GLLARN----ASIL-----HRVGHVLLQLNA 239
           ++G +P+ G +S   ++ +S ++      GL AR+    A++L     HR G       A
Sbjct: 184 VVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTA 243
Query: 240 VEP 242
             P
Sbjct: 244 SRP 246

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           GNA +K   + KA+ YY +A++L+  +A  +  R  AY + G +Q+A ED  K + LD
Sbjct: 50  GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           +E  + +G   F    W  AV  Y+E IK     A  YSNRAAA  +L  F +A  DC+K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 549 TISLDKK-VRARV 560
            I  D   VRA +
Sbjct: 64  AIEKDPNFVRAYI 76

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LK +GN  F  K +N+A+ YY  AI+L+     +YSN +A Y+  G  ++  E  +K + 
Sbjct: 24  LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 552 L 552
           +
Sbjct: 84  I 84

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LK +GN  F  K +N+A+ YY  AI+L+     +YSN +A Y+  G  ++  E  +K + 
Sbjct: 28  LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 552 L 552
           +
Sbjct: 88  I 88

>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With The Drug-Like Urea Inhibitor Pf-3845 Length = 543

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  ++K+ F  KG+ +  G      +   +E   VVV +L   GA     T + +  
Sbjct: 104 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 161
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F     N  +G  +NP   S  P                   LGTD  G +R P++FCGI
Sbjct: 162 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 221
Query: 193 LGYRPSHGTVSMIGV 207
            G +P+   +S  G+
Sbjct: 222 CGLKPTGNRLSKSGL 236

>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With 7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One, An Alpha-Ketooxazole Length = 573

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  ++K+ F  KG+ +  G      +   +E   VVV +L   GA     T + +  
Sbjct: 128 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 185
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F     N  +G  +NP   S  P                   LGTD  G +R P++FCGI
Sbjct: 186 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 245
Query: 193 LGYRPSHGTVSMIGV 207
            G +P+   +S  G+
Sbjct: 246 CGLKPTGNRLSKSGL 260

>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated With The Drug-Like Inhibitor Pf-750 Length = 587

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 73  LAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFA 132
           L G+  ++K+ F  KG+ +  G      +   +E   VVV +L   GA     T + +  
Sbjct: 142 LYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSM 199
Query: 133 FGITGENKHYGTPVNPQMPSHIPXXXXXXXXXXXXXQLVDFALGTDTIGCVRVPASFCGI 192
           F     N  +G  +NP   S  P                   LGTD  G +R P++FCGI
Sbjct: 200 FSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGI 259
Query: 193 LGYRPSHGTVSMIGV 207
            G +P+   +S  G+
Sbjct: 260 CGLKPTGNRLSKSGL 274

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           LK+KGN  F+ K+++ A+ YY+ A++L      +YSN +A Y+ +G  ++  E  +K + 
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 552 L 552
           L
Sbjct: 68  L 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	575
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	2e-56
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	1e-50
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	3e-49
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	1e-47
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	3e-43
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	2e-41
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	1e-40
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	2e-40
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	5e-40
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	5e-40
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-30
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-30
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-29
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-29
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-29
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-28
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-27
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-19
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-19
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	8e-17
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-14
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	6e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-04

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414

 Score =  194 bits (496), Expect = 2e-56
 Identities = 61/157 (38%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTV 127
            A  PL G+   IKD+ D     T  GS        +    A VV +L + GAT IGKT 
Sbjct: 49  QASGPLRGIAVGIKDIIDTANMPTEMGSE--IYRGWQPRSDAPVVMMLKRAGATIIGKTT 106

Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
              FA              NP    H PGG+SSGSA AV A ++  ALGT T G V  PA
Sbjct: 107 TTAFASRDPTATL------NPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRPA 160

Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNA 224
           ++CG    +PS   +  +GV   S +LDTVGL    A
Sbjct: 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARA 197

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434

 Score =  179 bits (456), Expect = 1e-50
 Identities = 74/170 (43%), Positives = 92/170 (54%), Gaps = 10/170 (5%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK-RDHHEAERTAVVVTLLLKNGATCIGKTV 127
            R PL GL   +KD+F VKG  T  G+   K       E  A  V  L + GA    KT 
Sbjct: 61  VRGPLHGLPLTVKDLFPVKGMPTRAGT---KAPLPPLPE-EARAVRRLREAGALLFAKTN 116

Query: 128 LDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPA 187
           + E A GITGEN   G   N   PS   GGSS GSAVAVA  +   +LGTDT G +R+PA
Sbjct: 117 MHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPA 176

Query: 188 SFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
            F G++G++PS+G VS+ G LP S+S D  G L R+   A  L  +  G 
Sbjct: 177 GFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE 226

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493

 Score =  177 bits (450), Expect = 3e-49
 Identities = 60/201 (29%), Positives = 87/201 (43%), Gaps = 18/201 (8%)

Query: 30  VLAETLRR--RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFD 85
           +L  T+      NP++N      F       E           A  P AG+ + +KD+  
Sbjct: 27  LLEATIAHVQAVNPEINAVIIPLFEKARRESE----------LASGPFAGVPYLLKDLTV 76

Query: 86  V-KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGT 144
           V +G +        K   + A+  A  V  +   G   +GKT   E    +T E + +G 
Sbjct: 77  VSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGA 136

Query: 145 PVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM 204
             NP       GGSS GS  AVAA L   A G D  G VR+PAS CG++G +P+ G +S 
Sbjct: 137 TRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISP 196

Query: 205 IGVLPNSQS---LDTVGLLAR 222
             ++ +S +       GL AR
Sbjct: 197 GPLVTDSDNVAGAAHEGLFAR 217

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521

 Score =  173 bits (440), Expect = 1e-47
 Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 23/178 (12%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
            +   L G + AIKD   V G           GF             R A VVT LL  G
Sbjct: 83  TSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPS----------RDATVVTRLLAAG 132

Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
           AT  GK V ++  F  +      G   NP       GGSS GSA  VA   VDFA+G D 
Sbjct: 133 ATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQ 192

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
            G +R+PA+FCG++G++P+ G V   G  P  +++D +G + R    A+++  V  G 
Sbjct: 193 GGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGR 250

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573

 Score =  161 bits (410), Expect = 3e-43
 Identities = 70/398 (17%), Positives = 134/398 (33%), Gaps = 47/398 (11%)

Query: 72  PLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEF 131
            L G+  ++K+ F  KG+ +  G    +     +E   VVV +L   GA     T + + 
Sbjct: 127 LLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQS 184

Query: 132 AFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCG 191
            F     N  +G  +NP   S  PGGSS G    + +      LGTD  G +R P++FCG
Sbjct: 185 MFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 244

Query: 192 ILGYRPSHGTVSMIGVLP----NSQSLDTVGLLARNAS---ILHRV-----------GHV 233
           I G +P+   +S  G+       +    ++G +AR+     +  +               
Sbjct: 245 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 304

Query: 234 LLQLNAVEPRRARRLIFA----DDIFQLSKVPKLKTIHVISKAIESLS--GYQ-----NP 282
            L       R +R L       D+    S  P ++    + +  + L   G+        
Sbjct: 305 PLPFREEVYRSSRPLRVGYYETDNYTMPS--PAMR--RALIETKQRLEAAGHTLIPFLPN 360

Query: 283 EHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK 342
                 + +++      G R+   + +           +++      FK +    +K   
Sbjct: 361 NIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLF 420

Query: 343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVI--PTVSDPPLKL 400
           PRL       +     + +   K L       R ++    K   + V+  P +       
Sbjct: 421 PRLAA-FLNNMRPR--SAEKLWK-LQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLN 476

Query: 401 NTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNE 438
              +   A  +      + + +        +P+     
Sbjct: 477 TPGRATGAVSY------TMLYNCLDFPAGVVPVTTVTA 508

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score =  155 bits (394), Expect = 2e-41
 Identities = 64/182 (35%), Positives = 86/182 (47%), Gaps = 29/182 (15%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
            R PL G+   +KD  +     T        GF   D           A +V  L   GA
Sbjct: 74  LRGPLHGIPLLLKDNINAAPMATSAGSLALQGFRPDD-----------AYLVRRLRDAGA 122

Query: 121 TCIGKTVLDEFAFGITGENK-----HYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFAL 175
             +GKT L E+A     ++        G   NP   SH P GSSSGSAVAVAA L   A+
Sbjct: 123 VVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAI 182

Query: 176 GTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV-- 230
           GT+T G +  PA+  G++G +P+ G VS  G++P S S DT G +AR+   A+ +     
Sbjct: 183 GTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA 242

Query: 231 GH 232
           G 
Sbjct: 243 GR 244

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471

 Score =  152 bits (387), Expect = 1e-40
 Identities = 68/177 (38%), Positives = 90/177 (50%), Gaps = 23/177 (12%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
              PLAGL  A+KD    +G  T         F  P            A  V  L   GA
Sbjct: 54  PGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPP----------YEATAVARLKALGA 103

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
             +GKT LDEF  G + E+  +    NP  P  +PGGSS GSA A+AA L   ALG+DT 
Sbjct: 104 LVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTG 163

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
           G VR PA+FCG+ G +P++G VS  G++  + SLD +G +AR+    ++L     G 
Sbjct: 164 GSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGP 220

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478

 Score =  152 bits (386), Expect = 2e-40
 Identities = 64/178 (35%), Positives = 90/178 (50%), Gaps = 23/178 (12%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
               PL G+  A+KD   V+G  T         F +P            A V+  L K G
Sbjct: 59  ERELPLFGIPIAVKDNILVEGEKTTCASKILENFVAP----------YDATVIERLKKAG 108

Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
           A  +GKT LDEFA G + E   +    NP     +PGGSS GSA +VA      +LG+DT
Sbjct: 109 ALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDT 168

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
            G +R PASFCG++G +P++G VS  G++  + SLD +G+  R     +++  V  G 
Sbjct: 169 GGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGW 226

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476

 Score =  151 bits (383), Expect = 5e-40
 Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 23/178 (12%)

Query: 68  AARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNG 119
             +    G+  AIKD     G  T         + S             A VV  + + G
Sbjct: 54  EKKGKFWGIPVAIKDNILTLGMRTTCASRILENYESV----------FDATVVKKMKEAG 103

Query: 120 ATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT 179
              +GK  LDEFA G + E   +    NP     +PGGSS GSA AV+A +V  ALG+DT
Sbjct: 104 FVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDT 163

Query: 180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
            G VR PAS CG++GY+P++G VS  G++  + SLD +G + +    A+IL  +  G 
Sbjct: 164 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGR 221

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485

 Score =  151 bits (383), Expect = 5e-40
 Identities = 64/177 (36%), Positives = 88/177 (49%), Gaps = 23/177 (12%)

Query: 69  ARQPLAGLKFAIKDVFDVKGYVT--------GFGSPDWKRDHHEAERTAVVVTLLLKNGA 120
               L G+   IKD     G  T        GF               + V+  L K  A
Sbjct: 67  MDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPI----------YESTVMEKLHKENA 116

Query: 121 TCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTI 180
             IGK  +DEFA G + E  ++   VNP     +PGGSS GSA AVAA LV  +LG+DT 
Sbjct: 117 VLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTG 176

Query: 181 GCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARN---ASILHRV--GH 232
           G +R PA++CG++G +P++G VS  G++  + SLD +G L RN    +I+     G 
Sbjct: 177 GSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  114 bits (288), Expect = 4e-30
 Identities = 32/76 (42%), Positives = 48/76 (63%)

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
           P  +G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+
Sbjct: 4   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 63

Query: 540 QQAEEDCSKTISLDKK 555
             A  D ++ I LDKK
Sbjct: 64  GYALGDATRAIELDKK 79

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  113 bits (284), Expect = 6e-30
 Identities = 30/70 (42%), Positives = 41/70 (58%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
           ++    LKEKGN A      + A+  YSEAIKL+  +   YSNR+AAY + G +Q+A ED
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60

Query: 546 CSKTISLDKK 555
             KT+ L   
Sbjct: 61  GCKTVDLKPD 70

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  111 bits (280), Expect = 3e-29
 Identities = 26/69 (37%), Positives = 41/69 (59%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
            +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 66

Query: 547 SKTISLDKK 555
            + + LD +
Sbjct: 67  RRALELDGQ 75

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  111 bits (279), Expect = 4e-29
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D + ++K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73

Query: 547 SKTISLDKK 555
            + I L+  
Sbjct: 74  EECIQLEPT 82

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  112 bits (281), Expect = 4e-29
 Identities = 27/76 (35%), Positives = 43/76 (56%)

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF 539
           P +      S+ LK +GNAA   K+++KA++ Y++A+ +   +  Y SNRAAAY   G  
Sbjct: 2   PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH 61

Query: 540 QQAEEDCSKTISLDKK 555
           ++A ED      +D K
Sbjct: 62  EKAAEDAELATVVDPK 77

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  110 bits (278), Expect = 4e-29
 Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           +E  + +G   F    W  AV  Y+E IK     A  YSNRAAA  +L  F +A  DC+K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 549 TISLDKK-VRA 558
            I  D   VRA
Sbjct: 64  AIEKDPNFVRA 74

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  109 bits (276), Expect = 8e-29
 Identities = 28/69 (40%), Positives = 41/69 (59%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           + ++  K KGN  FK   +  A+ +Y+EA+K +  +A  YSNRAA   +L  FQ+A +DC
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70

Query: 547 SKTISLDKK 555
              I LD K
Sbjct: 71  DTCIRLDSK 79

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  108 bits (273), Expect = 1e-28
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
            E  KE+GN+ FK   + +AV+ Y + I     +   YSN+A A ++LG + QA + C +
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 549 TISLDKK 555
            +     
Sbjct: 64  GLRYTST 70

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  108 bits (271), Expect = 3e-28
 Identities = 28/77 (36%), Positives = 48/77 (62%)

Query: 482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ 541
           +N   DA+   K+ GNAA+K K + KA  +Y +AI+L+ ++ T+Y+N+AA Y E   F +
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 542 AEEDCSKTISLDKKVRA 558
             + C K + + ++ RA
Sbjct: 61  CVQFCEKAVEVGRETRA 77

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  107 bits (270), Expect = 7e-28
 Identities = 28/69 (40%), Positives = 43/69 (62%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +E LK +GN   K + +  AV++Y +AI+LN  +A Y+ NRAAAY +LG +  A +DC
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69

Query: 547 SKTISLDKK 555
            + I +D  
Sbjct: 70  ERAICIDPA 78

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  107 bits (268), Expect = 1e-27
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
              KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + +  E C K 
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 550 ISLDKKVRA 558
           I + ++ R 
Sbjct: 65  IEVGRENRE 73

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  110 bits (275), Expect = 5e-27
 Identities = 26/69 (37%), Positives = 41/69 (59%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
            +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NRA  YL++   +QA  DC
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 547 SKTISLDKK 555
            + + LD +
Sbjct: 62  RRALELDGQ 70

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  103 bits (260), Expect = 2e-26
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQA 542
             + E L+++GN  FK   +  A+  Y++A+ L+ T    A  + NRAA +L+L  + +A
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKA 84

Query: 543 EEDCSKTISLDKK 555
           E + SK I  D  
Sbjct: 85  ETEASKAIEKDGG 97

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 31/72 (43%), Positives = 46/72 (63%)

Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
           G++  +E LK + N  FK K +  A+ +YS+AI+LN ++A YY NR+ AYL   C+  A 
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 544 EDCSKTISLDKK 555
            D ++ I LDKK
Sbjct: 61  GDATRAIELDKK 72

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 84.0 bits (208), Expect = 4e-19
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 18/88 (20%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI------------------KLNGTSATYYS 527
           + + E L++KGN  F  K + +A++ Y +A+                  +L+  +   Y+
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67

Query: 528 NRAAAYLELGCFQQAEEDCSKTISLDKK 555
           N +  YL +G   +AEE  S+ +  ++ 
Sbjct: 68  NMSQCYLNIGDLHEAEETSSEVLKREET 95

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 498 AAFKGKQWNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV 556
                   ++A    SE +K   T+    +  RA A +      +AEED    +      
Sbjct: 72  CYLNIGDLHEAEETSSEVLKREETNEKALFR-RAKARIAAWKLDEAEEDLKLLLRNHPAA 130

Query: 557 RARV 560
            + V
Sbjct: 131 ASVV 134

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 88.6 bits (220), Expect = 6e-19
 Identities = 18/83 (21%), Positives = 31/83 (37%)

Query: 471 NIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA 530
           +   +L        S+   E   E G       Q   A++ +  A+  +  +   Y  RA
Sbjct: 8   SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA 67

Query: 531 AAYLELGCFQQAEEDCSKTISLD 553
             +L +G  + A  D +K I L 
Sbjct: 68  TVFLAMGKSKAALPDLTKVIQLK 90

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY----YSNRAAAYLELGCF 539
             +     L E      +  ++  A + Y   +K   + A Y           + +    
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311

Query: 540 QQAEEDCSKTISLD 553
            +A   CS+ + ++
Sbjct: 312 VEAIRVCSEVLQME 325

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 11/75 (14%), Positives = 30/75 (40%)

Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           + + +       +   +   K ++  +A+   SE +++   +     +RA AYL    + 
Sbjct: 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYD 346

Query: 541 QAEEDCSKTISLDKK 555
           +A +D       ++ 
Sbjct: 347 EAIQDYETAQEHNEN 361

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 12/69 (17%), Positives = 27/69 (39%)

Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
             D  + L+ +   AF    +  A+ +  + +++    A     RA  +++ G  ++A  
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 545 DCSKTISLD 553
           D      L 
Sbjct: 199 DLKAASKLK 207

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 13/67 (19%), Positives = 28/67 (41%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +EL + +     K  +  KA++    A KL   +   +   +  Y +LG  + +  + 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 547 SKTISLD 553
            + + LD
Sbjct: 235 RECLKLD 241

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 10/61 (16%), Positives = 21/61 (34%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +        +   A+   ++ I+L          R    L+ G   +AE+D  K +  + 
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 555 K 555
            
Sbjct: 126 S 126

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    LK++  A    + +++A+  Y  A + N            A   L   Q  + D 
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK--QSQKRDY 384

Query: 547 SKTISLDK 554
            K + + +
Sbjct: 385 YKILGVKR 392

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 7/77 (9%), Positives = 23/77 (29%), Gaps = 12/77 (15%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR------------AAAYLEL 536
           +E   +     ++      +++   E +KL+      +++             A   +  
Sbjct: 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270

Query: 537 GCFQQAEEDCSKTISLD 553
           G +  A       +  +
Sbjct: 271 GRYTDATSKYESVMKTE 287

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.8 bits (203), Expect = 1e-17
 Identities = 26/67 (38%), Positives = 34/67 (50%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           + +E  + +G   F    W  AV  Y+E IK     A  YSNRAAA  +L  F +A  DC
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196

Query: 547 SKTISLD 553
           +K I  D
Sbjct: 197 NKAIEKD 203

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           ++  K +GN  +K +Q+++A+ +Y++A +L+    TY +NRAAA  E G ++ A    + 
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63

Query: 549 TISLD 553
            +   
Sbjct: 64  AVEQG 68

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +  A  K   + +A+   ++AI+ +      Y  +A A + +  +  A E      + D 
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

Query: 555 K 555
           +
Sbjct: 239 E 239

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 10/61 (16%), Positives = 26/61 (42%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +  A ++  ++  A++  ++A++        Y   + ++  +G       D  KTI   +
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 555 K 555
           K
Sbjct: 104 K 104

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 7/59 (11%), Positives = 15/59 (25%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
             +   K +   K +        +N   A         Y     +  A +  ++ I   
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA 169

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
              +  +       +    + I+    S T +   A    +L   ++  +       ++ 
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136

Query: 555 K 555
           +
Sbjct: 137 E 137

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 13/46 (28%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           K  A    K++  A+     A   +       S R    L     Q
Sbjct: 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.5 bits (202), Expect = 7e-17
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           E   E G       Q   A++ +  A+  +  +   Y  RA  +L +G  + A  D +K 
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 550 ISLD 553
           I+L 
Sbjct: 64  IALK 67

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY----YSNRAAAYLELGCF 539
             +     L E      +  ++  A + Y   +K   + A Y           + +    
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288

Query: 540 QQAEEDCSKTISLD 553
            +A   CS+ + ++
Sbjct: 289 VEAIRICSEVLQME 302

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 13/68 (19%), Positives = 28/68 (41%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
            D  + L+ +   AF G  +  A+ +  + +++    A     RA  +++ G  ++A  D
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176

Query: 546 CSKTISLD 553
                 L 
Sbjct: 177 LKAASKLK 184

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 11/73 (15%), Positives = 29/73 (39%)

Query: 481 DTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQ 540
           + + +       +   +   K ++  +A+   SE +++   +     +RA AYL    + 
Sbjct: 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323

Query: 541 QAEEDCSKTISLD 553
           +A +D       +
Sbjct: 324 EAIQDYEAAQEHN 336

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 13/67 (19%), Positives = 28/67 (41%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +EL + +     K  +  KA++    A KL   +   +   +  Y +LG  + +  + 
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211

Query: 547 SKTISLD 553
            + + LD
Sbjct: 212 RECLKLD 218

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +        +   A+   ++ I L          R    L+ G   +AE+D  K +  + 
Sbjct: 43  RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102

Query: 555 K 555
            
Sbjct: 103 S 103

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 10/51 (19%), Positives = 18/51 (35%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
           D    LK++  A    + +++A+  Y  A + N            A   L 
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 6/71 (8%), Positives = 20/71 (28%), Gaps = 12/71 (16%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR------------AAAYLELGCFQQA 542
                ++      +++   E +KL+      +++             A   +  G +  A
Sbjct: 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253

Query: 543 EEDCSKTISLD 553
                  +  +
Sbjct: 254 TSKYESVMKTE 264

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 78.3 bits (193), Expect = 8e-17
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNGTSATYYSNR 529
           + ++  +KE+GN  FK  + N+A+  Y EA+                K      +   N 
Sbjct: 35  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94

Query: 530 AAAYLELGCFQQAEEDCSKTISLDKK 555
           A  Y +   + +A +  SK + +DK 
Sbjct: 95  ATCYNKNKDYPKAIDHASKVLKIDKN 120

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557
              K K + KA+++ S+ +K++  +         A +  G  ++A+E+  K  SL+    
Sbjct: 97  CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156

Query: 558 A 558
            
Sbjct: 157 D 157

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +  LK+KGN  F+ K+++ A+ YY+ A++L      +YSN +A Y+ +G  ++  E  
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62

Query: 547 SKTISLDKK 555
           +K + L   
Sbjct: 63  TKALELKPD 71

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +  L+  G   F       A     +AI+L       Y   A    +     +     
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYF 293

Query: 547 SKTISLD 553
            K + LD
Sbjct: 294 DKALKLD 300

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 10/61 (16%), Positives = 23/61 (37%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
               A++  +++     +SEA +    +    +  A    +   F +A +     I L+ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 555 K 555
           K
Sbjct: 404 K 404

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE---------LG 537
           +A E+             ++KA+  Y  AI+L       Y   A    +         + 
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 538 CFQQAEEDCSKTISLD 553
            F +A     K   LD
Sbjct: 430 NFIEATNLLEKASKLD 445

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 10/61 (16%), Positives = 22/61 (36%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +G   F  + +++A   + +A +L+  +   Y   A        F   E   S+      
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 555 K 555
           +
Sbjct: 370 E 370

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
                       +  NY+ +A+KL+  +++ Y +R      L  + QA +D  K   LD
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD 334

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 13/54 (24%), Positives = 19/54 (35%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
                       K V   ++A++L    +     RA+A   LG F  A  D S 
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.0 bits (130), Expect = 8e-08
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           + + +A N   +A KL+  S       A   L+     +A     ++  L +
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 11/56 (19%), Positives = 20/56 (35%)

Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA 558
           + + + ++  +E  KL    A    +             A ED  K I L  +V +
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS 272

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
           +  LK +GN  F  K +N+A+ YY  AI+L+     +YSN +A Y+  G  ++  E  +K
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84

Query: 549 TISLDKK 555
            + +   
Sbjct: 85  ALEIKPD 91

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
                   +   +   ++ +A+ LN      Y +R   Y  L  ++ A+ED  K  SL+
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 8/61 (13%), Positives = 21/61 (34%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
                +K  ++ ++  +++E      T     +  A    + G F  A +       L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 555 K 555
            
Sbjct: 410 V 410

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
            D+Y SL     +   L          +A+  L   G   F       A     E+I L+
Sbjct: 222 TDMYHSLLSANTVDDPLRE--------NAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273

Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            T  +Y    A    +    Q+  +   K + L+
Sbjct: 274 PTPNSYI-FLALTLADKENSQEFFKFFQKAVDLN 306

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 12/59 (20%), Positives = 23/59 (38%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +G   F  + +  A   + +A  LN  +   Y   A    + G F ++E   ++T    
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 11/60 (18%), Positives = 20/60 (33%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
                       K + + ++A+++    +     RA+A   LG F  A  D S       
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 16/85 (18%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-------------- 532
              E+             ++ A+  Y  A +L       +                    
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 533 --YLELGCFQQAEEDCSKTISLDKK 555
              L+   F  A +  +K   LD +
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPR 460

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 10/69 (14%), Positives = 24/69 (34%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                   +       +++N A+   ++A +L+  S       A   L++    +A E  
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485

Query: 547 SKTISLDKK 555
             +  L + 
Sbjct: 486 EDSAILART 494

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 6/70 (8%), Positives = 18/70 (25%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
              L            ++  ++  +    L   +A         +        A+    +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

Query: 549 TISLDKKVRA 558
           +I+L     +
Sbjct: 269 SINLHPTPNS 278

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 4/53 (7%)

Query: 507 KAVNYYSEAIKLN----GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
                 ++   L+       A    NR   +     F +A +     I LD  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN 57

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 15/85 (17%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI---------------KLNGTSATYYSNRA 530
           ++ S ++KE+G   FK  ++ +A+  Y + +               K        + N A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203

Query: 531 AAYLELGCFQQAEEDCSKTISLDKK 555
             +L+L  F  A E C+K + LD  
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSN 228

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR 557
              K + ++ A+   ++A++L+  +    S R  A+L +  F+ A  D  K + L    +
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264

Query: 558 A 558
           A
Sbjct: 265 A 265

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 10/67 (14%), Positives = 24/67 (35%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
              ++  + G+  +    +  A+ Y  + I+   T    +     AY     + +A+   
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165

Query: 547 SKTISLD 553
            K + L 
Sbjct: 166 VKVLELK 172

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 13/61 (21%), Positives = 20/61 (32%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    K  Q + A+  Y  A+  + T    Y    + +   G F  A +   K I    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 555 K 555
            
Sbjct: 140 T 140

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS---KTIS 551
             +  FK   + +A+  +++       S   Y+ RA  Y EL  +  A++D       ++
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 552 LDKK 555
             K 
Sbjct: 69  ATKA 72

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 5/72 (6%), Positives = 21/72 (29%), Gaps = 3/72 (4%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNY---YSEAIKLNGTSATYYSNRAAAYLELGCFQQAE 543
           ++  +   +    ++  +++ A      Y   +      +  +       ++ G    A 
Sbjct: 35  NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94

Query: 544 EDCSKTISLDKK 555
           +     +  D  
Sbjct: 95  QQYQAAVDRDTT 106

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC---FQQAEEDCSKTIS 551
            G A +  K++ KA + + + ++L       Y  RA A            A+    K I 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 552 LDKK 555
           +   
Sbjct: 208 VCAP 211

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 11/70 (15%)

Query: 495 KGNAAFKGKQWNK---AVNYYSEAIKLNGTSATY--------YSNRAAAYLELGCFQQAE 543
           +  A        K   A  YY + I++                   A  Y       +A+
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241

Query: 544 EDCSKTISLD 553
                 ++LD
Sbjct: 242 AAWKNILALD 251

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D + +L    +  F+ ++ +++ ++ + AIK N   A  YSN    Y E G  Q+A E  
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

Query: 547 SKTISLD 553
              + L 
Sbjct: 91  RHALRLK 97

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GN   +  Q  +A+ +Y  A++L       Y N AAA +  G  + A +     +  +
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.8 bits (138), Expect = 7e-09
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GN   + + +++AV  Y  A+ L+   A  + N A  Y E G    A +   + I L 
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.8 bits (138), Expect = 8e-09
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
             NA  +     +A + Y+ A++L  T A   +N A    E G  ++A     K + + 
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
                ++    + A++ Y  AI+L       Y N A A  E G   +AE+  +  + L 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G       +   A++++ +A+ L+      Y N      E   F +A     + +SL 
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 12/59 (20%), Positives = 18/59 (30%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
              A         AV  Y  A++ N       S+       LG  ++A+    K I   
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 14/59 (23%), Positives = 22/59 (37%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GN      +  +A   Y +AI+     A  +SN    +   G    A     K ++LD
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
             N   +     +AV  Y +A+++    A  +SN A+   + G  Q+A     + I + 
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 3/60 (5%), Positives = 19/60 (31%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           E  +  ++   +  A  +  +  +    +       ++ + +     ++    +  I  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
             +   +  +  +A+ +Y EAI+++ T A  YSN      E+ 
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 1e-09
 Identities = 81/521 (15%), Positives = 156/521 (29%), Gaps = 173/521 (33%)

Query: 172 DFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQS-----LDTVGLLARNASI 226
            F    D   C  V      IL    S   +  I +  ++ S       T  LL++   +
Sbjct: 28  AFVDNFD---CKDVQDMPKSIL----SKEEIDHIIMSKDAVSGTLRLFWT--LLSKQEEM 78

Query: 227 LHRVGHVLLQLN--------AVEPRR----------ARRLIFAD-DIFQLSKVPKLKTIH 267
           + +    +L++N          E R+           R  ++ D  +F    V +L+   
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 268 VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATL--KALSSVMLSL 325
            + +A+  L            + +   +  + G          G   +      S  +  
Sbjct: 139 KLRQALLELR---------PAKNVL--IDGVLGS---------GKTWVALDVCLSYKV-Q 177

Query: 326 QRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVR-----------NEM 374
            + +FK I+  W+         N  E VLE +      I   +  R           + +
Sbjct: 178 CKMDFK-IF--WLNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 375 RAALQRLLK-----------DD--------------KILVI---PTVSDPPLKLNTKKTY 406
           +A L+RLLK            +              KIL+      V+D  L   T    
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHI 289

Query: 407 SAEFHDRTL-------VLSSIGSMSG------CCQVAIP-----IGK-YNEHPISISFIT 447
           S + H  TL       +L                    P     I +   +   +     
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWK 348

Query: 448 YHGGDKF--LLDTVLD---------LYDSL---QEQVNIASNLVPL-----PDTNGSIDA 488
           +   DK   ++++ L+         ++D L       +I + L+ L       ++  +  
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 489 SELLK----EKGNAAF-----------KGKQWNKA------VNYYS--EAIKLNGTSATY 525
           ++L K    EK                K K  N+       V++Y+  +    +     Y
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 526 YSNRAAAYL--ELGCFQQAEE-DCSKTISLD-----KKVRA 558
                 +++   L   +  E     + + LD     +K+R 
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 75/579 (12%), Positives = 155/579 (26%), Gaps = 162/579 (27%)

Query: 31  LAETLRRR-RNPKLNGRVDFGAFLERFELIPFPQPPPPAAR-QPLAGLKFAIKDVFDVKG 88
           L   ++   R P +     +    +R             +R QP   L+ A+ ++     
Sbjct: 94  LMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAK 151

Query: 89  YVT-----GFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYG 143
            V      G G    K        T V +         C+   V  +  F I      + 
Sbjct: 152 NVLIDGVLGSG----K--------TWVAL-------DVCLSYKVQCKMDFKI-----FW- 186

Query: 144 TPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVS 203
                     +   + + S   V   L             ++  ++      R  H +  
Sbjct: 187 ----------LNLKNCN-SPETVLEMLQKL--------LYQIDPNWTS----RSDHSS-- 221

Query: 204 MIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV-EPR-------RARRLIFADDIF 255
                     + ++    R         + LL L  V   +         + L+      
Sbjct: 222 -----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 256 QLSKVPKLKTIHVISKAIESLSGYQNPEHMNV-GQYIASNVPSLKGLRAQSTSPENGTAT 314
               +    T H+              E  ++  +Y+      L      +T+P      
Sbjct: 277 VTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNP------ 327

Query: 315 LKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT------------QD 362
            + LS +  S++  +    ++ W      +L   + E  L  +                 
Sbjct: 328 -RRLSIIAESIR--DGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 363 NIKILYKV---------RNEMRAALQRLLK--------DDKILVIPTVSDPPLKLNTKKT 405
           +  I   +         ++++   + +L K         +  + IP++    L+L  K  
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLE 440

Query: 406 YSAEFHDRTLVLSSIGSMSGCCQ---VAIPIGKYNEHPISISFITYH-----GGDKFLL- 456
                H    ++              +   + +Y       S I +H       ++  L 
Sbjct: 441 NEYALHRS--IVDHYNIPKTFDSDDLIPPYLDQY-----FYSHIGHHLKNIEHPERMTLF 493

Query: 457 -DTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA 515
               LD    L++++   S        N S      L++              + +Y   
Sbjct: 494 RMVFLDF-RFLEQKIRHDS-----TAWNASGSILNTLQQ--------------LKFYKPY 533

Query: 516 IKLNGTSATYYSNRAAAYLELGCF-QQAEEDCSKTISLD 553
           I  N      Y     A L+   F  + EE+   +   D
Sbjct: 534 ICDN---DPKYERLVNAILD---FLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 8e-08
 Identities = 49/441 (11%), Positives = 116/441 (26%), Gaps = 132/441 (29%)

Query: 14  NPKVWVVI-GVSVVGFVVLA-ETLRRRRNPKLNGRVDFGAF------LERFELIPFPQPP 65
            P   V+I GV   G   +A +      + K+  ++DF  F          E +      
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVL----- 199

Query: 66  PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCI-- 123
                + L  L + I        + +        +    + +  +   L  K    C+  
Sbjct: 200 -----EMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 124 -----GKTVLDEFAFG----ITGENKHYGTPVNPQMPSHIP-----GGSSSGSAVAVAAQ 169
                     + F       +T   K     ++    +HI         +     ++  +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 170 LVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVL----PN-SQSLDTVGLLARNA 224
            +D            +P          P    +S+I            +   V     N 
Sbjct: 310 YLD-------CRPQDLPREVLTTN---PRR--LSIIAESIRDGLATWDNWKHV-----NC 352

Query: 225 SILHRVGHVLLQLNAVEPRRARRL-----IFADDIFQLSKVPKLKTIHVISKAIESL--- 276
             L  +  +   LN +EP   R++     +F         +P        +  +  +   
Sbjct: 353 DKLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSA----HIP--------TILLSLIWFD 398

Query: 277 SGYQNPEHMNVGQYIASNVPSLKGLRAQS---TSPENGTATLKALSSVMLS--------- 324
               +   +            +  L   S     P+  T ++ ++   +           
Sbjct: 399 VIKSDVMVV------------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 325 ---LQRYEFKTIYEEWVKSAKPRLGYNVFERV---LEAINTTQ--DNIKILY-------- 368
              +  Y     ++           Y  +  +   L+ I   +     ++++        
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 369 KVRNE-----MRAALQRLLKD 384
           K+R++        ++   L+ 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ 526

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 10/60 (16%), Positives = 21/60 (35%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G      K   +A   ++ +I  +   A  Y  R   Y +   +  A +D  + +   +
Sbjct: 43  IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           +G  A   K W  A++ +S    +    +    N    Y  L    +AE+  +++I+ DK
Sbjct: 12  EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 555 K 555
            
Sbjct: 69  H 69

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 16/75 (21%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIK-LNGTSATYYS---------------NRAAAYLELGC 538
           +G   ++ ++++ A+    EA+  L G     Y                N A  Y +   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 539 FQQAEEDCSKTISLD 553
           +++AEE  +   S+ 
Sbjct: 137 WKKAEEQLALATSMK 151

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 10/67 (14%), Positives = 21/67 (31%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D  E L       ++   +  A   +     L+   + ++    A    +G +  A    
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78

Query: 547 SKTISLD 553
           S    +D
Sbjct: 79  SYGAVMD 85

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 11/59 (18%), Positives = 21/59 (35%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           G       Q++ A++ YS    ++     +  + A   L+ G   +AE        L  
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 462 LYDSLQEQVNIAS-----NLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI 516
           L  +LQ++V +A          L D      A +LL E+G           A N +S+A+
Sbjct: 15  LQPTLQQEVILARMEQILASRALTDDE---RA-QLLYERGVLYDSLGLRALARNDFSQAL 70

Query: 517 KLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            +       ++       + G F  A E     + LD
Sbjct: 71  AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G    +   ++ A   +   ++L+ T    + NR  A    G  + A++D       D
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GN + +     +     ++   L    +         YL LG    A       ++ +
Sbjct: 188 LGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
            G         + A   +  A+  N  +   +         LG  Q    +  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +G A + G +   A +      + +            A  +L   +QA+E   +     
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKS 174

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 17/83 (20%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAI-----------------KLNGTSATYYSNRAAA 532
           +  K  GN+ FK ++  +A+  Y  AI                          + N AA 
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239

Query: 533 YLELGCFQQAEEDCSKTISLDKK 555
            ++L  + +A   C+  ++ ++K
Sbjct: 240 LIKLKRYDEAIGHCNIVLTEEEK 262

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.6 bits (135), Expect = 6e-09
 Identities = 11/59 (18%), Positives = 17/59 (28%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G    K +Q   A+ Y   A++LN                 G   +A    +     D
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
                +   + KA   +++AI+ N   A  Y N A     +   ++A     K + LD
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD 87

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
             N      +  +A+ +Y +A++L+ ++AT Y      Y+    +++A++   K +   
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 7/59 (11%), Positives = 23/59 (38%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GN     + + +A + + +A++    +   +       ++L   + A     + + L+
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 9/59 (15%), Positives = 21/59 (35%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G         ++A++ ++   + +   A  + N    Y      ++A E   K I + 
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 507 KAVNYYSEAIKLNGTSATYYSNRAAAYL----ELGCFQQAEEDCSKTISLD 553
            + +++  +  L    +   S      +    E G +++A E  +K I  +
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN 53

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 14/68 (20%), Positives = 27/68 (39%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCS 547
           +S+L  E   A  K + ++KA  +Y E ++    +       A   +  G  + A     
Sbjct: 53  SSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112

Query: 548 KTISLDKK 555
           K + L+  
Sbjct: 113 KILQLEAD 120

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 496 GNAAF-KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           GN  +   +Q  K +    + +               + L    +++A     K I    
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188

Query: 555 KVRAR 559
              A+
Sbjct: 189 STEAQ 193

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 16/80 (20%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN----------------GTSATYYSNRAAAY 533
           + + +K +AA +  Q  +AV+Y+ + I LN                  S+   +  A AY
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64

Query: 534 LELGCFQQAEEDCSKTISLD 553
            +   + +A     + +   
Sbjct: 65  KKNRNYDKAYLFYKELLQKA 84

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEED 545
           +  + L+          Q   A+  Y + ++L   +          Y       ++  E 
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145

Query: 546 CSKTISLDKK 555
             K +S   K
Sbjct: 146 DYKKLSSPTK 155

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 9/58 (15%), Positives = 30/58 (51%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           +G   +    + ++++ + +AI+L+   + Y+  +  A   L  +++A +  +  I++
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKL--NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           KG A +  +++ +AV+ Y+  I +  +  +   ++ +A A   +   +   E       L
Sbjct: 46  KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105

Query: 553 D 553
           +
Sbjct: 106 E 106

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 9/59 (15%), Positives = 24/59 (40%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           KG +  K  ++++AV    +    +        +   AY++ G   +  E   ++++  
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.1 bits (126), Expect = 5e-08
 Identities = 6/59 (10%), Positives = 17/59 (28%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G A  K    ++       ++     +    +     Y+++  +  A     K    +
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G A     ++++A++ +  A+ L       +   A +Y ++G  ++A     K   LD
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G    + ++++ AV    +  + N  +         A   LG F +A +     + L 
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GNA +K   +++A+ YY +A++L+  SA  + N   AY + G + +A E   K + LD
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GNA +K   +++A+ YY +A++L+  SA  + N   AY + G + +A E   K + LD
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.8 bits (115), Expect = 7e-07
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GNA +K   +++A+ YY +A++L+  SA  + N   AY + G + +A E   K + LD
Sbjct: 75  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G+A  K K ++ A++  ++ + L+   A  ++  A  YL       A     +++++  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 555 K 555
            
Sbjct: 582 N 582

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 9/61 (14%), Positives = 22/61 (36%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G       + ++A  Y+S++  ++      +   A ++   G   QA    +    L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 555 K 555
            
Sbjct: 439 G 439

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 460 LDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN 519
               D L+   +  S++  L  +      S+LL  K +  F   ++   +   ++ ++++
Sbjct: 282 TSHEDELRRAEDYLSSINGLEKS------SDLLLCKADTLFVRSRFIDVLAITTKILEID 335

Query: 520 GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
             +   Y    A+  E G   +     +  +    +
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 9/66 (13%), Positives = 25/66 (37%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           ++      +  +  + NK     ++ +  +   A  +      YL +    +A    SK+
Sbjct: 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399

Query: 550 ISLDKK 555
            ++D +
Sbjct: 400 STMDPQ 405

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAAAYLELGCFQQ 541
             LL E G  AF       A+N++  A+ L           A  ++N   AY +L  +  
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534

Query: 542 AEEDCSKTISLD 553
           A +  ++ + L 
Sbjct: 535 AIDALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
             ++     + ++A++ Y+ A +L   +   Y      +++LG    A E    + +L 
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 10/89 (11%), Positives = 23/89 (25%)

Query: 465 SLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT 524
           +  E+ ++   L     +         L          +   +    Y  +I     S+ 
Sbjct: 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSD 306

Query: 525 YYSNRAAAYLELGCFQQAEEDCSKTISLD 553
               +A        F       +K + +D
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEID 335

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 9/61 (14%), Positives = 13/61 (21%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    +      A  Y   +  L        +            Q A       + L K
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506

Query: 555 K 555
           K
Sbjct: 507 K 507

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G   +   +++ A+  +  A+K N          A   L+LG    A E+    ++  
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
            L ++  +         +A++   +A ++N   A  +  R   Y  LG   +AE    + 
Sbjct: 85  ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144

Query: 550 ISLD 553
           ++L+
Sbjct: 145 LALE 148

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +G       + +KA     +A+ L   +    S  A  YL +G   +A    +K +   
Sbjct: 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
                    + ++A+  Y++A++            A+A L  G  ++A    +      
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 11/70 (15%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-----------GCFQQAE 543
                 K    N A+      +         Y   + AY+ L           G  +QA 
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 544 EDCSKTISLD 553
                   ++
Sbjct: 105 SVLKDAERVN 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 11/59 (18%), Positives = 24/59 (40%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G     G +  +A++ Y+ A+ +N        N A +Y  +  +  A +   + I + 
Sbjct: 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 6/59 (10%), Positives = 17/59 (28%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G    + ++   A+   + A  L+      ++  A ++        A       +   
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G        ++ A      A++L    A  ++   A        Q+A +  ++ + ++ 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 555 K-VRAR 559
             VR  
Sbjct: 238 GYVRVM 243

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 9/64 (14%), Positives = 17/64 (26%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
           E   E+G +  K     +A   +    +        + +      E      A    +  
Sbjct: 22  ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHA 81

Query: 550 ISLD 553
             LD
Sbjct: 82  RMLD 85

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 6/59 (10%), Positives = 20/59 (33%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +        ++ +       A+++N   A  +++    Y     +  A  +  + + L 
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR 202

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 7e-08
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GNA +K   +++A+ YY +A++L+  +A  + N   AY + G + +A E   K + LD
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 7e-08
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GNA +K   +++A+ YY +A++L+  +A  + N   AY + G + +A E   K + LD
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 16/76 (21%), Positives = 34/76 (44%)

Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
            + +         LL   G+   K K++ +A++Y+ +A+ L   +A+ YS     +  +G
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284

Query: 538 CFQQAEEDCSKTISLD 553
            F+ A +     + L 
Sbjct: 285 NFENAVDYFHTALGLR 300

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------ATYYSNRAAAYLELGCF 539
             ++ E G  AF+  +W  A  ++ +A++                  +N      +L  +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252

Query: 540 QQAEEDCSKTISLD 553
            +A +   + + L 
Sbjct: 253 AEALDYHRQALVLI 266

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 12/62 (19%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 495 KGNAAF-KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G      G +   A  Y S+A  L  T    +     ++       QA         L 
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155

Query: 554 KK 555
           K 
Sbjct: 156 KG 157

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 7/93 (7%)

Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS 522
           Y+   E V I  ++  L +        +++       +    +       S  ++ +   
Sbjct: 3   YNKPSETV-IPESVDGLQEN------LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH 55

Query: 523 ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           A+         +EL    +      K + L   
Sbjct: 56  ASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 8/61 (13%), Positives = 18/61 (29%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G           A  ++S+A+ +                + G ++ AE+     +   K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 555 K 555
            
Sbjct: 225 A 225

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G++     + ++A+  Y  A +L              Y      + AE   S+ +S+ 
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSK 548
             L        +  + N+      + + L  ++   +      YL +G   + A    SK
Sbjct: 57  SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116

Query: 549 TISLDKK 555
             +L+K 
Sbjct: 117 ATTLEKT 123

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G     G +  +AV  Y+ A+++         N   + + LG +++A  +    +SL +
Sbjct: 253 LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312

Query: 555 K 555
           K
Sbjct: 313 K 313

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 10/67 (14%), Positives = 20/67 (29%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             +E  +  G    + +    A+      ++L   +       A +Y      Q A E  
Sbjct: 97  GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL 156

Query: 547 SKTISLD 553
              I  +
Sbjct: 157 KNWIKQN 163

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 3/104 (2%)

Query: 452 DKFLLDTVLDLYDSLQEQVNIASNLVPLP--DTNGSIDASELLKEKGNAAFKGKQWNKAV 509
           ++      +      Q QV ++++         N   D      E+G    K       +
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAF-EEGLKRLKEGDLPVTI 85

Query: 510 NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            +   AI  +   A  +        E    Q A     + + L 
Sbjct: 86  LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 9/66 (13%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G       ++N+A++ ++ A+ +     + ++   A        ++A E  ++ + +  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 555 K-VRAR 559
             +R+R
Sbjct: 279 GFIRSR 284

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEED 545
           +  L +    +             Y EA   NG        +     +   G F +A + 
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235

Query: 546 CSKTISLD 553
            +  +++ 
Sbjct: 236 FNAALTVR 243

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G     G Q  +AV  Y  A++L         N   + + LG  ++A E   + +++ +
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316

Query: 555 K 555
           K
Sbjct: 317 K 317

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 9/61 (14%), Positives = 20/61 (32%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
            G    + +Q   A++     ++L   + T     A ++      +QA E     +    
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 555 K 555
            
Sbjct: 164 A 164

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
           N   D  +   E+G    +      AV  +  A++ +      +        E      A
Sbjct: 59  NPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117

Query: 543 EEDCSKTISLD 553
                + + L 
Sbjct: 118 ISALRRCLELK 128

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 8/59 (13%), Positives = 22/59 (37%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            G       +++KAV+ ++ A+ +       ++   A        ++A     + + L 
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
              +      + +    +  A++L+ TS            +   G + +A +  +  +S+
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246

Query: 553 D 553
            
Sbjct: 247 R 247

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 463 YDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFK--GKQWNKAVNYYSEAIKLNG 520
              +Q  V+   ++     +   I++ EL  E+G    K  G Q  +A   + +A++   
Sbjct: 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169

Query: 521 TSATYYSNRAAAYLELGCF---QQAEEDCSKTISLD 553
            +  + S  A A   L  +   Q A +   + I L+
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 503 KQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           +    AV +  +A + N       S  A+ +     +++AE    K  S +  
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 8/53 (15%), Positives = 17/53 (32%)

Query: 501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +G++  +      EA++          + A  Y       +A E   K +   
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 11/60 (18%), Positives = 21/60 (35%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           G        + +A+  YS    ++     +  + A  +L+LG    AE       +L   
Sbjct: 59  GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            GNA +K   +++A+ YY +A++L+  +A  + N   AY + G + +A E   K + LD
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLELGCFQQAEEDCSKTISL 552
           +             A+    E ++         Y     AY +LG +Q+A  +    I L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 553 D 553
           +
Sbjct: 65  N 65

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 8/60 (13%), Positives = 22/60 (36%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
                K    ++A+  + E ++ +      Y +    Y  L     A +  ++ I + ++
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 6/67 (8%), Positives = 16/67 (23%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

Query: 547 SKTISLD 553
            +   L 
Sbjct: 436 CQAHGLT 442

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 6/67 (8%), Positives = 16/67 (23%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                +   G      +   + +    +A  L        ++ +     L   Q+     
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 547 SKTISLD 553
            +   L 
Sbjct: 300 CQAHGLT 306

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 6/67 (8%), Positives = 15/67 (22%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367

Query: 547 SKTISLD 553
            +   L 
Sbjct: 368 CQAHGLT 374

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 6/64 (9%), Positives = 15/64 (23%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +   G      +   + +    +A  L        ++       L   Q+      + 
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 268

Query: 550 ISLD 553
             L 
Sbjct: 269 HGLT 272

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 5/67 (7%), Positives = 14/67 (20%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                +          +   + +    +A  L        ++       L   Q+     
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 547 SKTISLD 553
            +   L 
Sbjct: 402 CQAHGLT 408

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 5/64 (7%), Positives = 14/64 (21%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q+      + 
Sbjct: 73  VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 132

Query: 550 ISLD 553
             L 
Sbjct: 133 HGLT 136

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 5/64 (7%), Positives = 13/64 (20%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q       + 
Sbjct: 107 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQA 166

Query: 550 ISLD 553
             L 
Sbjct: 167 HGLT 170

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 6/64 (9%), Positives = 15/64 (23%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +   G      +   + +    +A  L        ++       L   Q+      + 
Sbjct: 175 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234

Query: 550 ISLD 553
             L 
Sbjct: 235 HGLT 238

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 5/59 (8%), Positives = 13/59 (22%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
                   +   + +    +A  L        ++       L   Q+      +   L 
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 3/67 (4%), Positives = 13/67 (19%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +    +          +   + +    +A  L        ++       L          
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRP 469

Query: 547 SKTISLD 553
              ++  
Sbjct: 470 DPALAAL 476

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 5/67 (7%), Positives = 14/67 (20%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +    +          +     +    +A  L        ++       L   Q+     
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197

Query: 547 SKTISLD 553
            +   L 
Sbjct: 198 CQAHGLT 204

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 16/95 (16%)

Query: 477 VPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAI----------------KLNG 520
           V L D +  +  SE LK  GN  FK + W  A+  Y++ +                KL  
Sbjct: 211 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP 270

Query: 521 TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
            + +   N  A  L++  +Q A + C + + +D  
Sbjct: 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 12/67 (17%), Positives = 28/67 (41%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             S +  +      +G+ + +A     +A+K +  +   +  RA  Y  L    +A+E  
Sbjct: 6   QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65

Query: 547 SKTISLD 553
            + +S+ 
Sbjct: 66  RQALSIK 72

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 12/65 (18%), Positives = 22/65 (33%)

Query: 495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK 554
           KG  + K  Q+  A  Y   ++         +   A   +  G    A+    K  S  +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 555 KVRAR 559
            ++A 
Sbjct: 179 VLQAD 183

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 501 KGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +  +  +++ Y+ +A+      T      N+     + G F  AE    ++++  
Sbjct: 89  RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 487 DASELLKEKGNA-AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED 545
             ++ L  KG A         +A    S+A+KL       ++     Y + G    A   
Sbjct: 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159

Query: 546 CSKTISLDKKVRA 558
            S  ++  K   +
Sbjct: 160 FSGALTHCKNKVS 172

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCS 547
            L    N     K   +A++ Y++A K++  +++    + NRA  +     + +A E  S
Sbjct: 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282

Query: 548 KTISLD 553
           +  +LD
Sbjct: 283 QAAALD 288

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 11/67 (16%), Positives = 30/67 (44%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           +A +   + G    +     +A     +A++++ +SA  ++  A  +      + A+E+ 
Sbjct: 35  EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEY 94

Query: 547 SKTISLD 553
            K ++ D
Sbjct: 95  RKALASD 101

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 8/58 (13%), Positives = 21/58 (36%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           G  + + K+  +A  Y+ ++++LN    +     A    +   +  A +         
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIK--LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           G   ++ K++ +A     EA +  L    +  + N     L++    QA+E   K++ L+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 7/55 (12%), Positives = 18/55 (32%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI 550
                   +   A   Y +A+  +  +A   +N      E   +++A +   +  
Sbjct: 78  AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 9/57 (15%), Positives = 20/57 (35%)

Query: 497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           ++    +  +       +  K    +   Y      YL+ G  +QA+    K + +D
Sbjct: 11  SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID 67

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            +   +  +  +A+ +Y EAI+++ T A  YSN      E+   Q A +  ++ I ++
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            N   +     +AV  Y +A+++    A  +SN A+   + G  Q+A     + I + 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
             ++     GN   + +    A+  Y+ AI++N   A  +SN A+ + + G   +A    
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 547 SKTISLD 553
              + L 
Sbjct: 135 RTALKLK 141

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 11/66 (16%), Positives = 21/66 (31%)

Query: 489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK 548
            + +          +Q+ +A + Y+ A  L     T   +     L L    +A+E    
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 549 TISLDK 554
            I    
Sbjct: 130 VIQHSN 135

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 7/60 (11%), Positives = 21/60 (35%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           G    + +Q++ A+ +   A+  + T +  +          G    A +     ++  + 
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 5/48 (10%), Positives = 8/48 (16%)

Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
                     +     +          Y E   F  A       +  D
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD 49

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 5/64 (7%), Positives = 14/64 (21%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q+      + 
Sbjct: 634 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 693

Query: 550 ISLD 553
             L 
Sbjct: 694 HGLT 697

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 7/67 (10%), Positives = 16/67 (23%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 547 SKTISLD 553
            +   L 
Sbjct: 352 CQAHGLT 358

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 6/67 (8%), Positives = 15/67 (22%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +          +   + +    +A  L        ++       L   Q+     
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVL 317

Query: 547 SKTISLD 553
            +   L 
Sbjct: 318 CQAHGLT 324

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 5/64 (7%), Positives = 14/64 (21%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q+      + 
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQA 252

Query: 550 ISLD 553
             L 
Sbjct: 253 HGLP 256

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 5/64 (7%), Positives = 14/64 (21%)

Query: 490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT 549
             +          +   + +    +A  L        ++       L   Q+      + 
Sbjct: 227 VAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQA 286

Query: 550 ISLD 553
             L 
Sbjct: 287 HGLT 290

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 6/67 (8%), Positives = 15/67 (22%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +          +   + +    +A  L        ++       L   Q+     
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385

Query: 547 SKTISLD 553
            +   L 
Sbjct: 386 CQAHGLT 392

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 7/67 (10%), Positives = 16/67 (23%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 547 SKTISLD 553
            +   L 
Sbjct: 589 CQAHGLT 595

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 5/67 (7%), Positives = 14/67 (20%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                +          +   + +    +A  L        ++       L   Q+     
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVL 520

Query: 547 SKTISLD 553
            +   L 
Sbjct: 521 CQAHGLT 527

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 7/67 (10%), Positives = 16/67 (23%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVL 724

Query: 547 SKTISLD 553
            +   L 
Sbjct: 725 CQAHGLT 731

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 6/64 (9%), Positives = 15/64 (23%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D    +   G      +   + +    +A  L        ++       L   Q+     
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVL 622

Query: 547 SKTI 550
            +  
Sbjct: 623 CQAH 626

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 6/69 (8%), Positives = 15/69 (21%)

Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
           + D    +              + +    +A  L        ++       L   Q+   
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 545 DCSKTISLD 553
              +   L 
Sbjct: 553 VLCQAHGLT 561

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 15/79 (18%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAI---------------KLNGTSATYYSNRAAAYLEL 536
           +KEKG   FKG ++ +AV  Y + +                        + N A  YL+L
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330

Query: 537 GCFQQAEEDCSKTISLDKK 555
             + +A E C K + LD  
Sbjct: 331 REYTKAVECCDKALGLDSA 349

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQ 540
           +A++L  +        K+ N A + + +A      +         Y      +   G   
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94

Query: 541 QAEEDCSKTISLDKK 555
            A +     I +   
Sbjct: 95  NAVDSLENAIQIFTH 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 6/60 (10%), Positives = 18/60 (30%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
           G    + ++   A+   + A  L+      ++  A ++        A       +    +
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 8/60 (13%), Positives = 16/60 (26%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           E+G +  K     +A   +    +        + +      E      A    +    LD
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 7/50 (14%), Positives = 16/50 (32%)

Query: 504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
              + +     A++        +   A A L +G     E    + ++L 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH 53

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 8/67 (11%), Positives = 18/67 (26%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
              E +   G   +  ++  +A     +A                A  + G  + A    
Sbjct: 55  GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114

Query: 547 SKTISLD 553
           ++   L 
Sbjct: 115 TRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 3/67 (4%), Positives = 9/67 (13%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                     +A                 + L+       +             +A    
Sbjct: 21  QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80

Query: 547 SKTISLD 553
            +     
Sbjct: 81  QQASDAA 87

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQ 540
            A+    +   A    KQ  +A + Y +  + +        +A  +        +L    
Sbjct: 34  SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93

Query: 541 QAEEDCSKTISL 552
           +A +   K   +
Sbjct: 94  EAVQYIEKASVM 105

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 479 LPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYYSNRAA 531
           L      I+ +E   +   + +  KQ   +++Y  +A ++       N      +S  A 
Sbjct: 133 LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192

Query: 532 AYLELGCFQQAEEDCSKTISLDKKV 556
            +L+L  ++ A     K  S+ +  
Sbjct: 193 NFLDLKQYEDAISHFQKAYSMAEAE 217

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 507 KAVNYYSEAIKLNGTSATY---YSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +AV YY +AI            Y    + +  LG +++AE   +  +   
Sbjct: 8   QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF 57

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCS 547
           L  +G    K       V+++  A+++        +  YS    AY  L  + +A E   
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71

Query: 548 KTISLDKKV 556
             ++L + +
Sbjct: 72  HDLTLARTI 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	575
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	100.0
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	100.0
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	100.0
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	100.0
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	100.0
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	100.0
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	100.0
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.35
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.32
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.3
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.23
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.22
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.05
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.01
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.01
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.0
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.0
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.98
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.96
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.94
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.93
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.92
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.92
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.92
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.92
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.92
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.91
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.91
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.9
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.9
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.9
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.89
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.88
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.88
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.86
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.86
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.85
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.85
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.83
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.82
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.82
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.8
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.79
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.78
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.76
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.75
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.74
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.73
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.71
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.69
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.69
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.68
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.66
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.64
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.64
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.63
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.62
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.62
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.62
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.57
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.53
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.52
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.52
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.51
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.5
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.48
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.47
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.47
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.46
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.46
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.45
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.45
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.42
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.42
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.42
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.38
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.37
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.36
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.35
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.34
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.33
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.27
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.27
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.26
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.26
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.25
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.25
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.25
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.25
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.22
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.19
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.1
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.07
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.02
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.01
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.0
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.0
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.95
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.95
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.95
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.94
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.93
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.87
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.86
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.86
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.85
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.85
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.85
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.83
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.77
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.76
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.74
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.74
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.7
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.7
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.64
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.64
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.59
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.58
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.56
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.55
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.49
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.46
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.42
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.37
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.34
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.29
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.19
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.14
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.12
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.0
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.91
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.9
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.85
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.85
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.8
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.69
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.55
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.48
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.39
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.3
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.23
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.22
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.16
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.05
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.01
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	95.95
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	95.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.63
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	95.18
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.74
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	93.86
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.82
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.65
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.73
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.57
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.26
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	88.67
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	86.17
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.07
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	82.67
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.46
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.83
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	80.43
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.2

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=4.7e-93  Score=745.89  Aligned_cols=406  Identities=28%  Similarity=0.331  Sum_probs=342.5

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~   99 (575)
                      +.+|++|+++.+++||+++|| +|||++.++++++++|+       .+...||||||||+|||||+++|++||+||+.| 
T Consensus        13 g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~-   90 (434)
T 2dc0_A           13 GRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKGMPTRAGTKAP-   90 (434)
T ss_dssp             TSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTTBCCCTTCSSC-
T ss_pred             CCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCCcccCCCCccc-
Confidence            449999999999999999999 99999998877665553       345679999999999999999999999999988 


Q ss_pred             ccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCC
Q 008170          100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT  179 (575)
Q Consensus       100 ~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDt  179 (575)
                      .  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|+||||
T Consensus        91 ~--~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDt  168 (434)
T 2dc0_A           91 L--PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDT  168 (434)
T ss_dssp             C--CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHHTSSSCEEEECS
T ss_pred             C--CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCCCceeeecCC
Confidence            2  34389999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc--ccCceEEeccchhhh
Q 008170          180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP--RRARRLIFADDIFQL  257 (575)
Q Consensus       180 gGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~  257 (575)
                      |||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+. ..++  ..+.|+.+..+.+. 
T Consensus       169 gGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~lrig~~~~~~~-  246 (434)
T 2dc0_A          169 GGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQNPVFGVPLDFLE-  246 (434)
T ss_dssp             SSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCSCEEEECHHHHT-
T ss_pred             ChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccCCEEEEECcccc-
Confidence            9999999999999999999999999999999999999999999999999999999876 3332  23456666655431 


Q ss_pred             cCCCchHHHHHHHHHHHHHhCCCCCccccccchhhc-cCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHH
Q 008170          258 SKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEE  336 (575)
Q Consensus       258 ~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~  336 (575)
                       ...++++.++++++++.|+..+.        .+++ .+| +...                 ...+..+...|.+..+.+
T Consensus       247 -~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~p-~~~~-----------------~~~~~~~~~~e~~~~~~~  299 (434)
T 2dc0_A          247 -GRLGVEVRKAFTRLLEDLPALRA--------EVREVSLP-LEGV-----------------YEVYTRLVRYEAARIHEK  299 (434)
T ss_dssp             -TCSCHHHHHHHHHHHHHTTTTTC--------EEEECCCC-CTTH-----------------HHHHHHHHHHHHHHHSHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCC-cHHH-----------------HHHHHHHHHHHHHHHHHH
Confidence             23467899999999999874432        2221 223 2211                 111122334455556666


Q ss_pred             HHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCccccc---c-hhhHh
Q 008170          337 WVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTY---S-AEFHD  412 (575)
Q Consensus       337 ~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~---~-~~~~~  412 (575)
                      ++......+++.++.+++.+..++..+|.++++.|+.+++.++++|+++|+||+||+|.+||++++....   . .....
T Consensus       300 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~  379 (434)
T 2dc0_A          300 ALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHRE  379 (434)
T ss_dssp             HHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHH
T ss_pred             HHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhh
Confidence            6666667799999999999999999999999999999999999999999999999999999999864210   0 11112


Q ss_pred             hhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHH
Q 008170          413 RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDS  465 (575)
Q Consensus       413 ~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~  465 (575)
                      .+..||.++|++|+|++|||+|+.+|||+||||+|++|+|..||+++.++|+.
T Consensus       380 ~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~  432 (434)
T 2dc0_A          380 AFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR  432 (434)
T ss_dssp             HHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence            33568999999999999999999899999999999999999999999998863

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=100.00  E-value=6.8e-92  Score=748.07  Aligned_cols=426  Identities=23%  Similarity=0.298  Sum_probs=333.6

Q ss_pred             HHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC--------CCCCCCCCCCceEEeeccccc
Q 008170           20 VIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP--------PPAARQPLAGLKFAIKDVFDV   86 (575)
Q Consensus        20 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~--------~~~~~gpL~Gvpi~vKD~~~~   86 (575)
                      .++++|+++     +|++|+++.+++||+++||.+|||++.++++++++|+        .+.. ||||||||+|||||++
T Consensus         6 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~~~v   84 (485)
T 3ip4_A            6 ESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDNIIT   84 (485)
T ss_dssp             CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETTBCB
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcCccc
Confidence            356666644     9999999999999999999999999998876655442        3445 9999999999999999


Q ss_pred             CCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008170           87 KGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAV  166 (575)
Q Consensus        87 ~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaV  166 (575)
                      +|++||+||+.+.+  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+||||||||||||
T Consensus        85 ~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAaaV  162 (485)
T 3ip4_A           85 NGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAV  162 (485)
T ss_dssp             TTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHH
T ss_pred             CCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHHHh
Confidence            99999999999875  5788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----
Q 008170          167 AAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----  242 (575)
Q Consensus       167 Aag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----  242 (575)
                      |+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++    
T Consensus       163 Aag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~~~  242 (485)
T 3ip4_A          163 AAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAP  242 (485)
T ss_dssp             HTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCC
T ss_pred             hcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987543221    


Q ss_pred             -------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCC
Q 008170          243 -------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPE  309 (575)
Q Consensus       243 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~  309 (575)
                                   ..+.|+.+..+.+.  ...++++.++++++++.|+..+.       +.++..+|.+......+    
T Consensus       243 ~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~-------~v~~~~~p~~~~~~~~~----  309 (485)
T 3ip4_A          243 VDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGA-------VVEEVSLPNTKFGIPSY----  309 (485)
T ss_dssp             CCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTC-------EEEEECCTTGGGHHHHH----
T ss_pred             cCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCcHHHHHHHH----
Confidence                         12346666655432  23467899999999999863332       01112233322111100    


Q ss_pred             CchhHHHHHHHHHHHHHhhh----------hhhhHHHHHHHcCCCCCHHHHHHHHHHhc-----CCHHHHHHHHHHHHHH
Q 008170          310 NGTATLKALSSVMLSLQRYE----------FKTIYEEWVKSAKPRLGYNVFERVLEAIN-----TTQDNIKILYKVRNEM  374 (575)
Q Consensus       310 ~~~~~~~~~~~~~~~l~~~e----------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~-----~s~~~~~~a~~~r~~~  374 (575)
                          ......+....+..+.          ....++.+.......+++.++.++..+..     ....+|.++++.|+.+
T Consensus       310 ----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~  385 (485)
T 3ip4_A          310 ----YVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLI  385 (485)
T ss_dssp             ----HHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHH
Confidence                0000011111111100          00011122222233577888888766542     1224588899999999


Q ss_pred             HHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchh
Q 008170          375 RAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKF  454 (575)
Q Consensus       375 ~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~  454 (575)
                      ++.++++|+++|+||+||+|.+||++++...+..... ....||.++|++|+|++|||+|+.+|||+||||+|++|+|..
T Consensus       386 ~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~~d~~  464 (485)
T 3ip4_A          386 KNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKT  464 (485)
T ss_dssp             HHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHH
T ss_pred             HHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCCCHHH
Confidence            9999999999999999999999999986432221111 122489999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHh
Q 008170          455 LLDTVLDLYDSL  466 (575)
Q Consensus       455 ll~~a~~~~~~~  466 (575)
                      ||++++++|+..
T Consensus       465 lL~~A~~lE~~~  476 (485)
T 3ip4_A          465 LYRVAYQYETQY  476 (485)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc
Confidence            999999999854

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=100.00  E-value=7.8e-91  Score=733.92  Aligned_cols=417  Identities=26%  Similarity=0.353  Sum_probs=333.5

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCC
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (575)
                      +.+|++|+++.+++||+++||.+|||++.+ ++++++|++.....|||||||+|||||+++|++||+||+.|.+  .++.
T Consensus        13 g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~~~~~--~~~~   89 (471)
T 3kfu_E           13 GEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLEN--FVPP   89 (471)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCSTTTT--CCCS
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCHhHcC--CCCC
Confidence            449999999999999999999999999999 8887776554444599999999999999999999999999875  5778


Q ss_pred             CchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccc
Q 008170          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (575)
Q Consensus       107 ~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiP  186 (575)
                      +||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|+|||||||||+|
T Consensus        90 ~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~GtDtgGSiR~P  169 (471)
T 3kfu_E           90 YEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQP  169 (471)
T ss_dssp             SCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred             CChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccccCCCCccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------ccCceEEe
Q 008170          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------RRARRLIF  250 (575)
Q Consensus       187 Aa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------~~~~~l~~  250 (575)
                      |+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++                ..+.|+.+
T Consensus       170 Aa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~lrIgv  249 (471)
T 3kfu_E          170 AAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGV  249 (471)
T ss_dssp             HHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSCCCCSSCEEEE
T ss_pred             hhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhccCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999987543221                12345666


Q ss_pred             ccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhh
Q 008170          251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEF  330 (575)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~  330 (575)
                      ..+.+   ...++++.++++++++.|+..+.       +.++..+|.+......+        ......+....+.++..
T Consensus       250 ~~~~~---~~~~p~v~~a~~~a~~~L~~~G~-------~v~~v~~p~~~~~~~~~--------~~~~~~e~~~~~~~~~~  311 (471)
T 3kfu_E          250 VREAL---AGNSPGVERALEEALKVFRELGL-------SVREVSWPSLPQALAAY--------YILAPAEASSNLARYDG  311 (471)
T ss_dssp             EGGGT---TTCCHHHHHHHHHHHHHHHTTTC-------EEEEECCTTGGGHHHHH--------HHHHHHHHHHHGGGCST
T ss_pred             ECCcc---CCCCHHHHHHHHHHHHHHHHcCC-------eeeeecCccHHHHHHHH--------HHHHHHHHHHHHHHhhh
Confidence            65543   23467899999999999974442       11122233332211100        00001111111111100


Q ss_pred             --------hhhHHHHHHHcCCCCCHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q 008170          331 --------KTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPP  397 (575)
Q Consensus       331 --------~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~a  397 (575)
                              ...+.+++...+..+++.++.++..+...     +..+|.++++.|..+++.++++|+++|+||+||+|.+|
T Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a  391 (471)
T 3kfu_E          312 TLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPA  391 (471)
T ss_dssp             TTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCSEEEEESCSSSC
T ss_pred             hccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCcCCCC
Confidence                    01222333333333899999888766433     33489999999999999999999999999999999999


Q ss_pred             CcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          398 LKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       398 p~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      |++++.......+..  ..||.++|++|+|++|||+|+.+|||+||||+|++|+|..||+++.++|+..
T Consensus       392 ~~~~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~  458 (471)
T 3kfu_E          392 FPFGARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEAT  458 (471)
T ss_dssp             CBTTTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred             CccccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            999864321111221  2389999999999999999998899999999999999999999999999854

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=100.00  E-value=4.6e-90  Score=718.16  Aligned_cols=394  Identities=24%  Similarity=0.301  Sum_probs=334.2

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCC
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (575)
                      +.+|++|+++.+++||++.|+.+|||++.+++++ +     ...||||||||+|||||+++|++||+||+.|.+  .++.
T Consensus        14 g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~   85 (414)
T 1o9p_A           14 GELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRG--WQPR   85 (414)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTSGGGTT--CCCS
T ss_pred             CCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCCHhhcc--CCCC
Confidence            4499999999999999999999999999988776 2     456999999999999999999999999999975  5678


Q ss_pred             CchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccc
Q 008170          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (575)
Q Consensus       107 ~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiP  186 (575)
                      +||++|+|||+|||||+||||||||++    .|+  |+|+||||++|+|||||||||||||+|++++|+|||||||||+|
T Consensus        86 ~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSIRiP  159 (414)
T 1o9p_A           86 SDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP  159 (414)
T ss_dssp             SCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred             CCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEEeeCCchhhhHh
Confidence            999999999999999999999999998    455  99999999999999999999999999999999999999999999


Q ss_pred             cccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCC---CcccCceEEeccchhhhcCCCch
Q 008170          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV---EPRRARRLIFADDIFQLSKVPKL  263 (575)
Q Consensus       187 Aa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~  263 (575)
                      |+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..   ....+.|+.+..+.+.  ...++
T Consensus       160 Aa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~~~~~--~~~~~  237 (414)
T 1o9p_A          160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFA--GAVEP  237 (414)
T ss_dssp             HHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGG--CCCCH
T ss_pred             HHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEECcccc--CCCCH
Confidence            999999999999999999999999999999999999999999999998875411   1123456666555431  23467


Q ss_pred             HHHHHHHHHHHHHhCCCCCccccccchhhc-cCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcC
Q 008170          264 KTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK  342 (575)
Q Consensus       264 ~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~  342 (575)
                      ++.++++++++.|+..+        +.+++ .+|..                ...+...+..+..+|.+..+..++....
T Consensus       238 ~v~~a~~~a~~~L~~~G--------~~v~~~~~~~~----------------~~~~~~~~~~~~~~e~~~~~~~~~~~~~  293 (414)
T 1o9p_A          238 AAEQGLQAAIKAAERAG--------ASVQAIDLPEA----------------VHEAWRIHPIIQDFEAHRALAWEFSEHH  293 (414)
T ss_dssp             HHHHHHHHHHHHHHHTT--------CEEEECCCCHH----------------HHHHHHHHHHHHHHHHHHHTHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHCC--------CEEEEecCcch----------------HHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            89999999999886333        22221 22211                1111222233445566667777777777


Q ss_pred             CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccc
Q 008170          343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS  422 (575)
Q Consensus       343 ~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n  422 (575)
                      ..+++.++.+++.+..++..+|.++++.|+.+++.++++|+++|+||+||+|.+||+++.....       ...||.++|
T Consensus       294 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~-------~~~~t~~~n  366 (414)
T 1o9p_A          294 DEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRLWT  366 (414)
T ss_dssp             GGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CGGGTHHHH
T ss_pred             hhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCc-------ccchhhhhH
Confidence            7899999999999999999999999999999999999999999999999999999998653211       125799999


Q ss_pred             cCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       423 l~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      ++|+|++|||+|+..|||+||||+|++|+|..||+++.++|+.+.
T Consensus       367 l~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~  411 (414)
T 1o9p_A          367 LMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (414)
T ss_dssp             HHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            999999999999877999999999999999999999999998654

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=100.00  E-value=4e-91  Score=738.31  Aligned_cols=426  Identities=24%  Similarity=0.314  Sum_probs=334.2

Q ss_pred             HHHHhhc-----hhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCC-CCCCCCCceEEeecccccCCccccCC
Q 008170           21 IGVSVVG-----FVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPA-ARQPLAGLKFAIKDVFDVKGYVTGFG   94 (575)
Q Consensus        21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~-~~gpL~Gvpi~vKD~~~~~G~~tt~G   94 (575)
                      ++++|++     .+|++|+++.+++||+++||.+|||++.++++++++|++.. ..||||||||+|||||+++|++||+|
T Consensus         6 sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~tt~G   85 (478)
T 3h0l_A            6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKTTCA   85 (478)
T ss_dssp             CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSBCCTT
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCCcCCc
Confidence            4555553     39999999999999999999999999998877665554322 27999999999999999999999999


Q ss_pred             ChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCcee
Q 008170           95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFA  174 (575)
Q Consensus        95 s~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a  174 (575)
                      |+.+.+  .++.+||++|+||++|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|
T Consensus        86 s~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a  163 (478)
T 3h0l_A           86 SKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVS  163 (478)
T ss_dssp             CGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSSSCE
T ss_pred             CHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCCcee
Confidence            999875  577899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc------------
Q 008170          175 LGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP------------  242 (575)
Q Consensus       175 iGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------  242 (575)
                      +|||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++            
T Consensus       164 ~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~~~~~  243 (478)
T 3h0l_A          164 LGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSE  243 (478)
T ss_dssp             EEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCCHHH
T ss_pred             eecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999987653221            


Q ss_pred             -----ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHH
Q 008170          243 -----RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKA  317 (575)
Q Consensus       243 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~  317 (575)
                           ..+.|+.+..+.+.  ...++++.++++++++.|+..+.       +.++..+|.+......+        ....
T Consensus       244 ~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~-------~v~~v~~p~~~~~~~~~--------~~~~  306 (478)
T 3h0l_A          244 EVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGF-------EIKEVSLPHVKYSIPTY--------YIIA  306 (478)
T ss_dssp             HTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTC-------EEEEECCTTGGGHHHHH--------HHHH
T ss_pred             hhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCcHHHHHHHH--------HHHH
Confidence                 12346666655432  23467899999999999863332       01112233322111100        0000


Q ss_pred             HHHHHHHHHhhh----------hhhhHHHHHHHcCCCCCHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHh
Q 008170          318 LSSVMLSLQRYE----------FKTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDNIKILYKVRNEMRAALQRLL  382 (575)
Q Consensus       318 ~~~~~~~l~~~e----------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-----s~~~~~~a~~~r~~~~~~~~~~~  382 (575)
                      ..+....+.++.          .....+.+.......+++.++.++..+...     ...+|.++++.|+.+++.++++|
T Consensus       307 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~  386 (478)
T 3h0l_A          307 PSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDFLKAF  386 (478)
T ss_dssp             HHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111111100          000111122222345788888888766422     23458889999999999999999


Q ss_pred             CCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHH
Q 008170          383 KDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDL  462 (575)
Q Consensus       383 ~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~  462 (575)
                      +++|+||+||+|.+||++++......... ....||.++|++|+|++|||+|+.+|||+||||+|++|+|..||+++.++
T Consensus       387 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~l  465 (478)
T 3h0l_A          387 EEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQISYLW  465 (478)
T ss_dssp             TTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHH
T ss_pred             hcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            99999999999999999986432221111 12248999999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 008170          463 YDSL  466 (575)
Q Consensus       463 ~~~~  466 (575)
                      |+..
T Consensus       466 E~~~  469 (478)
T 3h0l_A          466 EQKF  469 (478)
T ss_dssp             HHHS
T ss_pred             HHhc
Confidence            9854

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=100.00  E-value=1.1e-90  Score=740.92  Aligned_cols=421  Identities=20%  Similarity=0.215  Sum_probs=340.8

Q ss_pred             HHHHhhc-----hhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeeccc-ccCCccccCC
Q 008170           21 IGVSVVG-----FVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVF-DVKGYVTGFG   94 (575)
Q Consensus        21 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~-~~~G~~tt~G   94 (575)
                      ++++|++     .+|++|+++.+++||++.|+.+|||++.++++++++|+. . .||||||||+||||| +++|++||+|
T Consensus         9 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~~Tt~G   86 (493)
T 3a2q_A            9 DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGDINTSS   86 (493)
T ss_dssp             CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTSBCCTT
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCCccccc
Confidence            5666664     499999999999999999999999999988776666554 3 699999999999999 9999999999


Q ss_pred             ChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCcee
Q 008170           95 SPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFA  174 (575)
Q Consensus        95 s~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~a  174 (575)
                      |+.|...+.++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|
T Consensus        87 s~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG~~~~a  166 (493)
T 3a2q_A           87 IKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVA  166 (493)
T ss_dssp             CHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEE
T ss_pred             ChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCcee
Confidence            99997112578899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCccccccccccceeeeCCCCCccCCCC--C-CCCCCCccccccccCHHHHHHHHHHHccCCCCCc---------
Q 008170          175 LGTDTIGCVRVPASFCGILGYRPSHGTVSMIGV--L-PNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP---------  242 (575)
Q Consensus       175 iGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~--~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~---------  242 (575)
                      +|||||||||+||+||||||||||+||||+.|+  + |.++++|++|||+||++|++.+++++.+.+..++         
T Consensus       167 lGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~  246 (493)
T 3a2q_A          167 HGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRP  246 (493)
T ss_dssp             EEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCCCCSSC
T ss_pred             eecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCcccccCCCcc
Confidence            999999999999999999999999999999998  5 7788999999999999999999999987543221         


Q ss_pred             --------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhc-cCcchHHhhhccCCCCCchh
Q 008170          243 --------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTA  313 (575)
Q Consensus       243 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~-~~p~l~~~~~~~~~~~~~~~  313 (575)
                              ..+.|+.+..+.+......++++.++++++++.|+..+.        .|++ .+|.+..  .          
T Consensus       247 ~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~~~~~~--~----------  306 (493)
T 3a2q_A          247 YAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGH--------DVNDAYPEALGD--R----------  306 (493)
T ss_dssp             HHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTC--------EEEECCCGGGGC--C----------
T ss_pred             hhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCccCH--H----------
Confidence                    123356665543210112467899999999999863332        2221 1221210  0          


Q ss_pred             HHHHHHHHHHHHHhhhhhh---hHHHHHH--HcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHh-CCCCE
Q 008170          314 TLKALSSVMLSLQRYEFKT---IYEEWVK--SAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLL-KDDKI  387 (575)
Q Consensus       314 ~~~~~~~~~~~l~~~e~~~---~~~~~~~--~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~Dv  387 (575)
                         .+...+..+...|++.   .+..++.  .....+++.++.+++.+..++..+|.++++.|+++++.+.++| +++|+
T Consensus       307 ---~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~  383 (493)
T 3a2q_A          307 ---SFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDL  383 (493)
T ss_dssp             ---THHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence               0011112222334433   2233331  2345688999999999999999999999999999999999999 99999


Q ss_pred             EEecCCCCCCCcCCccccc---------ch--hhHhhhhccccccccCCCCccccccccc-CCCCcccccccccCCchhH
Q 008170          388 LVIPTVSDPPLKLNTKKTY---------SA--EFHDRTLVLSSIGSMSGCCQVAIPIGKY-NEHPISISFITYHGGDKFL  455 (575)
Q Consensus       388 Ll~Pt~~~~ap~~~~~~~~---------~~--~~~~~~~~~t~~~nl~G~PaisvP~G~~-~GlPvGlqivg~~~~d~~l  455 (575)
                      ||+||+|.+||++++....         ..  .....+..||.++|++|+|++|||+|++ +|||+||||+|++|+|..|
T Consensus       384 ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~l  463 (493)
T 3a2q_A          384 LILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLL  463 (493)
T ss_dssp             EEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHH
T ss_pred             EEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHH
Confidence            9999999999999864321         00  0112345689999999999999999986 9999999999999999999


Q ss_pred             HhHHHHHHHHh
Q 008170          456 LDTVLDLYDSL  466 (575)
Q Consensus       456 l~~a~~~~~~~  466 (575)
                      |+++.++|+..
T Consensus       464 L~~A~~lE~~~  474 (493)
T 3a2q_A          464 LQVAAQLEGAL  474 (493)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhc
Confidence            99999999864

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=100.00  E-value=9.5e-90  Score=730.68  Aligned_cols=403  Identities=23%  Similarity=0.287  Sum_probs=326.0

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCC
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (575)
                      +.+|++|+++.+++||+++||.+|||++.++++++.+     . ||||||||+|||||+++|++||+||+.|.+  .++.
T Consensus        19 g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald~-----~-gpL~GvPi~vKD~~~v~G~~Tt~Gs~~~~~--~~~~   90 (476)
T 2gi3_A           19 SEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK-----K-GKFWGIPVAIKDNILTLGMRTTCASRILEN--YESV   90 (476)
T ss_dssp             CHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C-STTTTCEEEEETTBCCSSSCCCTTCGGGTT--CCCC
T ss_pred             CCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhhc-----c-CCcCCceEEEEcCccCCCCccCccChhhcC--CCCC
Confidence            4599999999999999999999999999998877621     2 999999999999999999999999999974  5788


Q ss_pred             CchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccc
Q 008170          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (575)
Q Consensus       107 ~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiP  186 (575)
                      +||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++++|||||||||||+|
T Consensus        91 ~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiP  170 (476)
T 2gi3_A           91 FDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP  170 (476)
T ss_dssp             SCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHH
T ss_pred             CChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCceEeecCCCchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCc----------------ccCceEEe
Q 008170          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEP----------------RRARRLIF  250 (575)
Q Consensus       187 Aa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~----------------~~~~~l~~  250 (575)
                      |+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++                ..+.|+.+
T Consensus       171 Aa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~~~~~~~~~lrig~  250 (476)
T 2gi3_A          171 ASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAV  250 (476)
T ss_dssp             HHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEE
T ss_pred             HHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhhhhhcCCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999986543221                12346666


Q ss_pred             ccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhh
Q 008170          251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE  329 (575)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e  329 (575)
                      ..+.+.  ...++++.++++++++.|+..+.        .+ +..+|.+.....                 .+..+...|
T Consensus       251 ~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~p~~~~~~~-----------------~~~~~~~~e  303 (476)
T 2gi3_A          251 PEEIYE--HDIEEGVSERFEEALKLLERLGA--------KVERVKIPHIKYSVA-----------------TYYVIAPAE  303 (476)
T ss_dssp             EGGGGG--SCCCHHHHHHHHHHHHHHHHTTC--------EEEEECCTTGGGHHH-----------------HHHHHHHHH
T ss_pred             ECcccc--CCCCHHHHHHHHHHHHHHHHCCC--------EEEEeCCCchHHHHH-----------------HHHHHHHHH
Confidence            655431  23467899999999999864332        11 112232221100                 001111112


Q ss_pred             hhhh-----------------HHHHHHH-cCCCCCHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHHhCCCC
Q 008170          330 FKTI-----------------YEEWVKS-AKPRLGYNVFERVLEAINTTQ-----DNIKILYKVRNEMRAALQRLLKDDK  386 (575)
Q Consensus       330 ~~~~-----------------~~~~~~~-~~~~l~~~~~~~l~~~~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~D  386 (575)
                      +...                 +.+++.. ....+++.++.++..+..++.     .+|.++++.|+.+++.++++|+++|
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  383 (476)
T 2gi3_A          304 ASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYD  383 (476)
T ss_dssp             HHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1111                 1112221 234577888888877654433     3788899999999999999999999


Q ss_pred             EEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          387 ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       387 vLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      +||+||+|.+||++++.......+.  ...||.++|++|+|++|||+|+.+|||+||||+|++|+|..||+++.++|+..
T Consensus       384 ~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~~  461 (476)
T 2gi3_A          384 AILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNS  461 (476)
T ss_dssp             EEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             EEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999986211111121  23589999999999999999999999999999999999999999999999864

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=100.00  E-value=7.4e-89  Score=727.90  Aligned_cols=407  Identities=23%  Similarity=0.283  Sum_probs=325.6

Q ss_pred             HHHHhh-----chhHHHHHHHHhhcccccCC---CCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccc
Q 008170           21 IGVSVV-----GFVVLAETLRRRRNPKLNGR---VDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFD   85 (575)
Q Consensus        21 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~   85 (575)
                      ++.+|+     +.+|++|+++.+++||+++|   |.+|||++.+++ ++++|+       .+...||||||||+|||||+
T Consensus        12 ~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~   90 (503)
T 1m22_A           12 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLLKDNIN   90 (503)
T ss_dssp             CHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBC
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeEeecccc
Confidence            455555     44999999999999999999   999999999877 665543       34567999999999999999


Q ss_pred             cCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccc-----cCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008170           86 VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAF-----GITGENKHYGTPVNPQMPSHIPGGSSS  160 (575)
Q Consensus        86 ~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~-----~~~~~n~~~G~~~NP~~~~~~~GGSSg  160 (575)
                      ++|++||+||+.|.+  .++ +||++|+|||+|||||+||||||||++     +.+|+|++||+|+||||++|+||||||
T Consensus        91 v~G~~Tt~Gs~~~~~--~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSg  167 (503)
T 1m22_A           91 AAPMATSAGSLALQG--FRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSS  167 (503)
T ss_dssp             CTTSCCCTTCGGGTT--CCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCCSSSH
T ss_pred             cCCCCcCCCCHhhcC--CCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccHH
Confidence            999999999999975  577 999999999999999999999999998     778999999999999999999999999


Q ss_pred             HHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCC
Q 008170          161 GSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAV  240 (575)
Q Consensus       161 GsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~  240 (575)
                      |||||||+|++++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..
T Consensus       168 GsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~vl~g~d~~  247 (503)
T 1m22_A          168 GSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDA  247 (503)
T ss_dssp             HHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875432


Q ss_pred             Cc---------------------ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCcch
Q 008170          241 EP---------------------RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVPSL  298 (575)
Q Consensus       241 ~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p~l  298 (575)
                      ++                     ..+.|+.+..+.+.    .++++.++++++++.|+..+.        .+ +..+|.+
T Consensus       248 d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~--------~v~~~~~p~~  315 (503)
T 1m22_A          248 DPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGA--------VVVPVELPNQ  315 (503)
T ss_dssp             CGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTC--------EEEEECCTTT
T ss_pred             CccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcCC--------EEEEeCCCcH
Confidence            21                     12345666655431    356788999999998863332        11 1122322


Q ss_pred             HHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHH---------------------HcCCCCCHHHHHHHHHHh
Q 008170          299 KGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVK---------------------SAKPRLGYNVFERVLEAI  357 (575)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~---------------------~~~~~l~~~~~~~l~~~~  357 (575)
                      .++...         .        ..+...|+...+..|+.                     .....+++.++.++..+.
T Consensus       316 ~~~~~~---------~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (503)
T 1m22_A          316 GAWAEA---------E--------RTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATA  378 (503)
T ss_dssp             TTTHHH---------H--------HHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCC
T ss_pred             HHHHHH---------H--------HHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcC
Confidence            111000         0        00111111111111111                     113457788888888887


Q ss_pred             cCCHHHHHHHHHHHHHHHHH--HHHHhCC--CCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccc
Q 008170          358 NTTQDNIKILYKVRNEMRAA--LQRLLKD--DKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPI  433 (575)
Q Consensus       358 ~~s~~~~~~a~~~r~~~~~~--~~~~~~~--~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~  433 (575)
                      .++..+|.++++.|+++++.  ++++|++  +|+||+||+ .++|+++....   .+   ...||.++|++|+|+||||+
T Consensus       379 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~---~~---~~~~t~~~nl~G~PaisvP~  451 (503)
T 1m22_A          379 GLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGD---DF---PGESYSAAAVAGYPSLTVPM  451 (503)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC------CC---TTCCHHHHHHHTCCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccC---cc---cccccccchhhCCCeEEecc
Confidence            78889999998888888765  9999974  999999999 56777652111   11   14689999999999999999


Q ss_pred             cccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          434 GKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       434 G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      |+.+|||+||||+|++|+|..||+++.++|+...
T Consensus       452 g~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~~  485 (503)
T 1m22_A          452 GQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTR  485 (503)
T ss_dssp             EEETTEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCeEEEEECCCCChHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999998653

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=100.00  E-value=5.3e-87  Score=713.23  Aligned_cols=416  Identities=23%  Similarity=0.259  Sum_probs=321.5

Q ss_pred             hHH-HHHHHHhhcccccCCCCcCcEE-eeccCCCCCCCC----------------CCCCCCCCCCceEEeecccccCCcc
Q 008170           29 VVL-AETLRRRRNPKLNGRVDFGAFL-ERFELIPFPQPP----------------PPAARQPLAGLKFAIKDVFDVKGYV   90 (575)
Q Consensus        29 ~~~-~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~a~----------------~~~~~gpL~Gvpi~vKD~~~~~G~~   90 (575)
                      ++. +++++.++++++++++.+|+++ +..++++ .++.                .+...||||||||+|||||+|+|++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPi~vKD~i~v~G~~  105 (521)
T 3a1k_A           27 RLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAGVP  105 (521)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTTCEEEEETTBCCTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCCCEEEEEcCcccCCcc
Confidence            555 6666666666666665555555 3332222 1110                1345699999999999999999999


Q ss_pred             ccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcC
Q 008170           91 TGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQL  170 (575)
Q Consensus        91 tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~  170 (575)
                      ||+||+.|.+  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|+
T Consensus       106 Tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAAVAag~  183 (521)
T 3a1k_A          106 MMNGSRTVEG--FTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGD  183 (521)
T ss_dssp             BCTTCTTTTT--BCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETTEEEEECCSSSHHHHHHHHTTS
T ss_pred             cCCCChhhcC--CCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHhcCC
Confidence            9999999975  57889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCCcc-------
Q 008170          171 VDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPR-------  243 (575)
Q Consensus       171 ~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~-------  243 (575)
                      +++|||||||||||+||+||||||||||+||||+.|++|+++++|++|||+||++|++.+++++.+.+..++.       
T Consensus       184 ~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vlag~d~~D~~~~~~~~~  263 (521)
T 3a1k_A          184 VDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQADSVEA  263 (521)
T ss_dssp             SSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHHHHCSCCSSCTTSCTTCCC
T ss_pred             cceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHHHHhCCCCCCccccccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999875432211       


Q ss_pred             -----------cCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhh-ccCcchHHhhhccCCCCCc
Q 008170          244 -----------RARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIA-SNVPSLKGLRAQSTSPENG  311 (575)
Q Consensus       244 -----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~-~~~p~l~~~~~~~~~~~~~  311 (575)
                                 .+.|+.++.+.+.. ...++++.++++++++.|+..+        +.|+ ..+|.+......       
T Consensus       264 ~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G--------a~v~ev~~p~~~~~~~~-------  327 (521)
T 3a1k_A          264 GDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVRAAAHSLTEIG--------CTVEEVNIPWHLHAFHI-------  327 (521)
T ss_dssp             CCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHHHHHHGGGGGT--------CEEEEECCTHHHHHHHH-------
T ss_pred             cchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHHHHHHHHHHCC--------CEEEEeCCCchHhHHHH-------
Confidence                       22356665553311 1235789999999999886333        2222 223322211000       


Q ss_pred             hhHHHHHH--HHHHHHH-------------hhhhhhhHHHHHHHcCCCCCHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 008170          312 TATLKALS--SVMLSLQ-------------RYEFKTIYEEWVKSAKPRLGYNVFERVLEAI----NTTQDNIKILYKVRN  372 (575)
Q Consensus       312 ~~~~~~~~--~~~~~l~-------------~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~----~~s~~~~~~a~~~r~  372 (575)
                         +..+.  .....+.             ..++...+..+.......+++.++.++..+.    .++..+|.++++.|+
T Consensus       328 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~a~~~r~  404 (521)
T 3a1k_A          328 ---WNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVP  404 (521)
T ss_dssp             ---HHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence               00000  0000110             0122223444555555678999998887663    356778999999999


Q ss_pred             HHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHh---hhhccccccccCCCCcccccccccCCCCccccccccc
Q 008170          373 EMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHD---RTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYH  449 (575)
Q Consensus       373 ~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~---~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~  449 (575)
                      .+++.++++|+++|+||+||+|.+||++++.......+..   .++.||.++|++|+|+||||+|+.+|||+||||+|++
T Consensus       405 ~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~  484 (521)
T 3a1k_A          405 LARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPVGMMITGRH  484 (521)
T ss_dssp             HHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECST
T ss_pred             HHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecccCCCCCeeEEEEcCC
Confidence            9999999999999999999999999999864322222221   2346799999999999999999999999999999999


Q ss_pred             CCchhHHhHHHHHHHHh
Q 008170          450 GGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       450 ~~d~~ll~~a~~~~~~~  466 (575)
                      |+|..||+++.++|+..
T Consensus       485 ~~d~~LL~~A~~~E~~~  501 (521)
T 3a1k_A          485 FDDATVLRVGRAFEKLR  501 (521)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999999843

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=100.00  E-value=2.1e-85  Score=702.77  Aligned_cols=443  Identities=16%  Similarity=0.183  Sum_probs=332.5

Q ss_pred             ecCCCCchhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecc
Q 008170            9 KTNTSNPKVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDV   83 (575)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~   83 (575)
                      .+.+...+++..|+++|++.     +|++|+++++++||.+.|+.+|||++.++++ .++++.....||||||||+||||
T Consensus        60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~  138 (573)
T 3ppm_A           60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKEC  138 (573)
T ss_dssp             CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETT
T ss_pred             CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcc
Confidence            34455567777789998855     9999999999999999999999999987653 22222223359999999999999


Q ss_pred             cccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008170           84 FDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSA  163 (575)
Q Consensus        84 ~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsa  163 (575)
                      |+++|++||+||..|.+  .++.+||++|+||++||||++||||||||+++.+|.|+.||+|+||||++++|||||||||
T Consensus       139 ~~~~G~~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsa  216 (573)
T 3ppm_A          139 FSYKGHDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEG  216 (573)
T ss_dssp             BCCBTCCCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHH
T ss_pred             cCCCCCCcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHH
Confidence            99999999999999975  5788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCC----CccccccccCHHHHHHHHHHHccCC-
Q 008170          164 VAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQS----LDTVGLLARNASILHRVGHVLLQLN-  238 (575)
Q Consensus       164 aaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~----~d~~G~~ar~~~d~~~v~~~~~~~~-  238 (575)
                      ||||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+++    +|++|||+||++|++.+++++.+.+ 
T Consensus       217 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~  296 (573)
T 3ppm_A          217 ALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHL  296 (573)
T ss_dssp             HHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHH
T ss_pred             HHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999998775    8999999999999999998876432 


Q ss_pred             ----C-CC----------cccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhh
Q 008170          239 ----A-VE----------PRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRA  303 (575)
Q Consensus       239 ----~-~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~  303 (575)
                          . ..          ...+.++++..+..  ...+++++.++++++++.|+..+.       +.++..+|.+.+...
T Consensus       297 ~~~d~~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~-------~v~~~~~p~~~~~~~  367 (573)
T 3ppm_A          297 FTLDPTVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGH-------TLIPFLPNNIPYALE  367 (573)
T ss_dssp             HHHCTTSCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTC-------EEEECCCTTHHHHHH
T ss_pred             cccCCCCCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEecCccHHHHHH
Confidence                0 00          12344566654432  223468899999999999863332       011122333221110


Q ss_pred             cc----CCCCCchhHHHHHHH-----HHH-HHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008170          304 QS----TSPENGTATLKALSS-----VML-SLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNE  373 (575)
Q Consensus       304 ~~----~~~~~~~~~~~~~~~-----~~~-~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~  373 (575)
                      ..    ...+........+..     ... ..............+......+.|.+...+..+...+..++++++..|..
T Consensus       368 ~~~~~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~  447 (573)
T 3ppm_A          368 VLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEM  447 (573)
T ss_dssp             THHHHHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            00    000000000000000     000 00000000001111111112345555556666677889999999999999


Q ss_pred             HHHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCccccccccc---------------
Q 008170          374 MRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKY---------------  436 (575)
Q Consensus       374 ~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~---------------  436 (575)
                      +++.+.+.|.  ++|+||+|+ +.+|++|+....     ...+..||.+||++|+|+++||+|+.               
T Consensus       448 ~r~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~-----~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~  521 (573)
T 3ppm_A          448 YRQSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR-----ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYF  521 (573)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----cccccchhhhhHhhCCCeEEEeccccccccccccccccccc
Confidence            9999999995  599999999 558888874211     11235789999999999999999953               


Q ss_pred             ---------------CCCCcccccccccCCchhHHhHHHHHHHHhhhh
Q 008170          437 ---------------NEHPISISFITYHGGDKFLLDTVLDLYDSLQEQ  469 (575)
Q Consensus       437 ---------------~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~~~  469 (575)
                                     +|+|+||||||++++|+.||+++..+|+.+...
T Consensus       522 ~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~  569 (573)
T 3ppm_A          522 GDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ  569 (573)
T ss_dssp             CSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             chhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc
Confidence                           699999999999999999999999999987654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=6.3e-14  Score=121.02  Aligned_cols=92  Identities=33%  Similarity=0.374  Sum_probs=85.5

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR  559 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~  559 (575)
                      .-+|+.++.++++|+.++++|+|++|++.|+++|+++|+++.+|+++|.+|.++|++++|+.+|+++++++|++.   ..
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            457999999999999999999999999999999999999999999999999999999999999999999999988   46


Q ss_pred             HHHHHHHHHHhhhhh
Q 008170          560 VGYVDCSMLIYLLCI  574 (575)
Q Consensus       560 ~~~~~~~l~~~~~~i  574 (575)
                      +|.++..+++|..|+
T Consensus        87 lg~~~~~~~~~~~A~  101 (126)
T 4gco_A           87 KAACLVAMREWSKAQ  101 (126)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHCCCHHHHH
Confidence            777777788887775

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.43  E-value=3.6e-13  Score=116.35  Aligned_cols=90  Identities=32%  Similarity=0.471  Sum_probs=79.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-------
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-------  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-------  557 (575)
                      .++.+..++++|+.++++|+|++|+.+|++||+++|+++.+|+|+|.+|.++|+|++|+.+|+++++++|++.       
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            3577889999999999999999999999999999999999999999999999999999999999999998753       


Q ss_pred             ---HHHHHHHHHHHHhhhhh
Q 008170          558 ---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 ---~~~~~~~~~l~~~~~~i  574 (575)
                         ..+|.++..+++|..||
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~  103 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAV  103 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence               24555666666666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.35  E-value=3.8e-12  Score=113.39  Aligned_cols=92  Identities=15%  Similarity=0.053  Sum_probs=85.4

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR  559 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~  559 (575)
                      ..+|++...++++|..++++|+|++|+..|+++++++|+++.+|+++|.+|.++|+|++|+..|+++++++|+++   ..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            356899999999999999999999999999999999999999999999999999999999999999999999987   56


Q ss_pred             HHHHHHHHHHhhhhh
Q 008170          560 VGYVDCSMLIYLLCI  574 (575)
Q Consensus       560 ~~~~~~~l~~~~~~i  574 (575)
                      +|.++..+|++..|+
T Consensus       110 lg~~~~~lg~~~eA~  124 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAK  124 (151)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            777888888887775

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.32  E-value=6.2e-12  Score=111.49  Aligned_cols=88  Identities=11%  Similarity=0.075  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SAT-----YYSNRAAAYLELGCFQQAEEDCSKTISL--  552 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~-----~~~~ra~~~~~l~~~~~Ai~~~~~al~l--  552 (575)
                      ..+..++++|+.+++.|+|++|+.+|++||+++|+       +..     +|+|+|.++.++|+|++|+.+|+++|++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            46888999999999999999999999999999999       544     9999999999999999999999999999  


Q ss_pred             -----CcccHHHH-------HHHHHHHHHhhhhh
Q 008170          553 -----DKKVRARV-------GYVDCSMLIYLLCI  574 (575)
Q Consensus       553 -----~P~~~~~~-------~~~~~~l~~~~~~i  574 (575)
                           +|++...+       |.++..+++|..||
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl  122 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAM  122 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH
Confidence                 99987555       56666667777665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=1.5e-11  Score=105.25  Aligned_cols=89  Identities=31%  Similarity=0.406  Sum_probs=78.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |..+..|+++|+.+++.|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+.+|+++++++|++.   ..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            356888999999999999999999999999999999999999999999999999999999999999999887   45667


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+++|..|+
T Consensus        81 ~~~~~~~~~~A~   92 (126)
T 3upv_A           81 AQIAVKEYASAL   92 (126)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHHhCHHHHH
Confidence            777777777664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.24  E-value=5.4e-11  Score=107.06  Aligned_cols=93  Identities=32%  Similarity=0.468  Sum_probs=82.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A  558 (575)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~  558 (575)
                      ..+++.++..|+.+|+.+++.|+|++|+..|+++++++|+++.+|+++|.+|+++++|++|+.+|+++++++|++.   .
T Consensus         4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   83 (164)
T 3sz7_A            4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS   83 (164)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999999999999999999999987   4


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .++.++..+++|..|+
T Consensus        84 ~lg~~~~~~g~~~~A~   99 (164)
T 3sz7_A           84 RLGLARFDMADYKGAK   99 (164)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHccCHHHHH
Confidence            5677777777777665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.23  E-value=2.5e-11  Score=109.08  Aligned_cols=90  Identities=22%  Similarity=0.371  Sum_probs=62.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------------------NGTSATYYSNRAAAYLELGCFQQAEEDC  546 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------------------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~  546 (575)
                      ..+.+..++++|+.+++.|+|++|+..|++++++                  +|.+..+|+|+|.||+++|+|++|+.+|
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3456677777777777777777777777777777                  5666677777777777777777777777


Q ss_pred             HHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          547 SKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       547 ~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      +++|+++|++.   ..+|.++..+|+|..|+
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~  117 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAE  117 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHH
Confidence            77777777766   34555555566665554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.22  E-value=6.8e-11  Score=101.76  Aligned_cols=78  Identities=14%  Similarity=0.205  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      |..+..|.++|.++++.|+|++|+..|+++|+++|++..+|+++|.++..+|++++|+.+|+++++++|++...+-.+
T Consensus        44 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           44 PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            566889999999999999999999999999999999999999999999999999999999999999999998654433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.19  E-value=6.3e-11  Score=105.29  Aligned_cols=88  Identities=11%  Similarity=0.035  Sum_probs=78.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~  561 (575)
                      +|+....++..|..|++.|+|++|++.|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|++..   .++
T Consensus        27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  106 (150)
T 4ga2_A           27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIA  106 (150)
T ss_dssp             HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47788899999999999999999999999999999999999999999999999999999999999999999884   455


Q ss_pred             HHHHHHHHhhh
Q 008170          562 YVDCSMLIYLL  572 (575)
Q Consensus       562 ~~~~~l~~~~~  572 (575)
                      .++..++++..
T Consensus       107 ~~~~~~~~~~~  117 (150)
T 4ga2_A          107 ELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHCSSSS
T ss_pred             HHHHHcCChHH
Confidence            56666666543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.19  E-value=1e-10  Score=103.71  Aligned_cols=90  Identities=12%  Similarity=0.042  Sum_probs=76.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      +|++...++++|..++++|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++   ..+|
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   96 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA   96 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            4788888899999999999999999999999999999999999999999999999999999999999998876   4566


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..+|++..|+
T Consensus        97 ~~~~~~g~~~~A~  109 (148)
T 2vgx_A           97 ECLLQXGELAEAE  109 (148)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            6677777776654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.4e-10  Score=96.33  Aligned_cols=87  Identities=25%  Similarity=0.363  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------H---H
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV------R---A  558 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~------~---~  558 (575)
                      .+..+.++|..+++.|+|++|+..|+++++++|+++.+++++|.++.++|++++|+.+|+++++++|++      .   .
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999999999999997      3   4


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .++.++..++++..++
T Consensus        83 ~~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHhHhhhH
Confidence            5666667777666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.17  E-value=1.7e-10  Score=101.24  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=78.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV  560 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~  560 (575)
                      .+|+....++++|..+++.|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|+++   ..+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            45788888999999999999999999999999999999999999999999999999999999999999999877   456


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      |.++..+|+|..|+
T Consensus        93 g~~~~~~g~~~~A~  106 (142)
T 2xcb_A           93 AECHLQLGDLDGAE  106 (142)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            77777777776664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.13  E-value=5e-10  Score=95.47  Aligned_cols=85  Identities=13%  Similarity=-0.049  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCS  566 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~  566 (575)
                      ..++++|..+++.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++.   ..++.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999988   467777788


Q ss_pred             HHHhhhhh
Q 008170          567 MLIYLLCI  574 (575)
Q Consensus       567 l~~~~~~i  574 (575)
                      +|++..|+
T Consensus        98 ~g~~~~A~  105 (121)
T 1hxi_A           98 EHNANAAL  105 (121)
T ss_dssp             HHHHHHHH
T ss_pred             cCCHHHHH
Confidence            88887765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.08  E-value=5.6e-10  Score=96.45  Aligned_cols=89  Identities=34%  Similarity=0.492  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      +..+..++..|..+++.|+|++|+..|+++++++|+++.+++++|.++..++++++|+.+++++++++|++.   ..++.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            456888999999999999999999999999999999999999999999999999999999999999999887   45666


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+++|..|+
T Consensus        86 ~~~~~~~~~~A~   97 (137)
T 3q49_B           86 CQLEMESYDEAI   97 (137)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHHhhHHHHH
Confidence            777777777664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.06  E-value=7.2e-10  Score=98.56  Aligned_cols=72  Identities=15%  Similarity=0.103  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |.++..|.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.||.++|++++|+..|+++++++|+..
T Consensus        67 P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            667889999999999999999999999999999999999999999999999999999999999999999876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.05  E-value=4.3e-10  Score=99.60  Aligned_cols=72  Identities=15%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-------NGTSATYY----SNRAAAYLELGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-------~p~~~~~~----~~ra~~~~~l~~~~~Ai~~~~~al~l~P  554 (575)
                      +.++..|.++|.++.+.|+|++|+.+|+++|++       +|+++.+|    +|+|.++..+|++++|+.+|+++++++|
T Consensus        54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            446779999999999999999999999999999       99999999    9999999999999999999999999999


Q ss_pred             ccH
Q 008170          555 KVR  557 (575)
Q Consensus       555 ~~~  557 (575)
                      ++.
T Consensus       134 ~d~  136 (159)
T 2hr2_A          134 ERK  136 (159)
T ss_dssp             HCC
T ss_pred             CcH
Confidence            876

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.03  E-value=6.6e-10  Score=123.78  Aligned_cols=89  Identities=17%  Similarity=0.133  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |+.+..|.++|+.+.++|+|++|++.|+++|+++|+++.+|+|+|.+|.++|++++|++.|+++++++|++.   ..+|.
T Consensus        40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~  119 (723)
T 4gyw_A           40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS  119 (723)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            444556666666666666666666666666666666666666666666666666666666666666666655   34455


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+|+|..|+
T Consensus       120 ~~~~~g~~~eAi  131 (723)
T 4gyw_A          120 IHKDSGNIPEAI  131 (723)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            555555555554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.01  E-value=1.1e-09  Score=89.79  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=67.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +|+....++++|..+++.|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+..+++++++.|++.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            4677899999999999999999999999999999999999999999999999999999999999999987543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.01  E-value=5.1e-09  Score=83.22  Aligned_cols=79  Identities=25%  Similarity=0.400  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVD  564 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~  564 (575)
                      +..+..+.+.|..+++.|+|++|+..|+++++++|++..+++++|.++.+++++++|+..++++++++|++...+..++
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999886444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.00  E-value=2.3e-09  Score=87.20  Aligned_cols=82  Identities=17%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH--HHHHHHHH
Q 008170          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV--GYVDCSML  568 (575)
Q Consensus       492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~--~~~~~~l~  568 (575)
                      .+++|..+++.|+|++|+..|+++++.+|+++. +++++|.+|.++|++++|+..|+++++++|++...+  +.+...+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999998765  66666666


Q ss_pred             Hhhhh
Q 008170          569 IYLLC  573 (575)
Q Consensus       569 ~~~~~  573 (575)
                      .|..+
T Consensus        83 ~~~~~   87 (99)
T 2kc7_A           83 FYNKD   87 (99)
T ss_dssp             HHCCT
T ss_pred             HHHHH
Confidence            66554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.00  E-value=2e-09  Score=91.88  Aligned_cols=73  Identities=40%  Similarity=0.572  Sum_probs=37.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+.....++++|..+++.|+|++|+..|+++++.+|++..+++++|.++..++++++|+..++++++++|++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   84 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI   84 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence            3444555555555555555555555555555555555555555555555555555555555555555555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.98  E-value=2.5e-09  Score=94.55  Aligned_cols=74  Identities=14%  Similarity=0.150  Sum_probs=68.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQW----------NKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----------CFQQAE  543 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~----------~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-----------~~~~Ai  543 (575)
                      +|++++.|.+.|+++.+.+++          ++|+.+|++||+++|++..+|+++|.+|.+++           ++++|+
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~  111 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  111 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence            367899999999999998875          59999999999999999999999999999985           899999


Q ss_pred             HHHHHHHHhCcccHH
Q 008170          544 EDCSKTISLDKKVRA  558 (575)
Q Consensus       544 ~~~~~al~l~P~~~~  558 (575)
                      .+|++|++++|++..
T Consensus       112 ~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A          112 QFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhCCCCHH
Confidence            999999999999873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.96  E-value=5.9e-09  Score=93.27  Aligned_cols=73  Identities=18%  Similarity=0.090  Sum_probs=70.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ++.....|.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++.
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            4667889999999999999999999999999999999999999999999999999999999999999999987

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.96  E-value=3.2e-09  Score=100.29  Aligned_cols=89  Identities=13%  Similarity=0.086  Sum_probs=80.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |.++..+.++|..+++.|++++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|++.   ..++.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            455678999999999999999999999999999999999999999999999999999999999999999987   46677


Q ss_pred             HHHHH-----------HHhhhhh
Q 008170          563 VDCSM-----------LIYLLCI  574 (575)
Q Consensus       563 ~~~~l-----------~~~~~~i  574 (575)
                      ++..+           |++..|+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~  104 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQAL  104 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHH
Confidence            77777           8877765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.94  E-value=7.7e-09  Score=96.95  Aligned_cols=66  Identities=18%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      +|..+++.|+|++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++...+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~  125 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN  125 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.93  E-value=6.5e-09  Score=88.58  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD------KKVRAR  559 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~------P~~~~~  559 (575)
                      |+....|.++|..+++.|+|++|+..|+++++++|++..+|+++|.++..+|++++|+.+++++++++      |++...
T Consensus        35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~  114 (126)
T 3upv_A           35 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI  114 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHH
Confidence            45578999999999999999999999999999999999999999999999999999999999999999      776654


Q ss_pred             HHHHH
Q 008170          560 VGYVD  564 (575)
Q Consensus       560 ~~~~~  564 (575)
                      +..+.
T Consensus       115 ~~~l~  119 (126)
T 3upv_A          115 DQLYY  119 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.92  E-value=3.4e-09  Score=112.16  Aligned_cols=83  Identities=16%  Similarity=0.182  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC  565 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~  565 (575)
                      ...|.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|+++++|++|+.+|+++++++|++.   ..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555555555555555555544   33444444


Q ss_pred             HHHHhh
Q 008170          566 SMLIYL  571 (575)
Q Consensus       566 ~l~~~~  571 (575)
                      .++++.
T Consensus       397 ~~~~~~  402 (457)
T 1kt0_A          397 KAKEHN  402 (457)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.92  E-value=4.4e-09  Score=106.61  Aligned_cols=85  Identities=16%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC  565 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~  565 (575)
                      ...|.++|.++++.|+|++|+..|+++++++|+++.+|+++|.+|..++++++|+.+|+++++++|++.   ..++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            577888888888888888888888888888888888888888888888888888888888888888776   35566666


Q ss_pred             HHHHhhhh
Q 008170          566 SMLIYLLC  573 (575)
Q Consensus       566 ~l~~~~~~  573 (575)
                      .++++..+
T Consensus       276 ~~~~~~~a  283 (336)
T 1p5q_A          276 RIRRQLAR  283 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=6.8e-09  Score=90.44  Aligned_cols=70  Identities=26%  Similarity=0.327  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      ...+.+.|..+++.|+|++|+..|+++++++|++..+++++|.++..++++++|+..++++++++|++..
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  134 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV  134 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence            5556666666666666666666666666666666666666666666666666666666666666666553

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.92  E-value=2.9e-09  Score=104.97  Aligned_cols=88  Identities=34%  Similarity=0.505  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      ..+..++++|+.++++|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+.+++++++++|++.   ..+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999887   456666


Q ss_pred             HHHHHHhhhhh
Q 008170          564 DCSMLIYLLCI  574 (575)
Q Consensus       564 ~~~l~~~~~~i  574 (575)
                      +..+|+|..|+
T Consensus        82 ~~~~g~~~~A~   92 (281)
T 2c2l_A           82 QLEMESYDEAI   92 (281)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHcCCHHHHH
Confidence            66677776664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.92  E-value=7.7e-09  Score=87.16  Aligned_cols=74  Identities=18%  Similarity=0.092  Sum_probs=71.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      +|.....+.++|..+++.|+|++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|++..
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999998874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.91  E-value=3e-09  Score=118.42  Aligned_cols=90  Identities=17%  Similarity=0.096  Sum_probs=71.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~  561 (575)
                      +|+.+..|.++|+.+.++|++++|++.|+++++++|+++.+|+|+|.+|.++|++++|++.|+++++++|++..   .++
T Consensus        73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~  152 (723)
T 4gyw_A           73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA  152 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence            46677788888888888888888888888888888888888888888888888888888888888888888773   455


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..+++|..|+
T Consensus       153 ~~l~~~g~~~~A~  165 (723)
T 4gyw_A          153 HCLQIVCDWTDYD  165 (723)
T ss_dssp             HHHHHTTCCTTHH
T ss_pred             hHHHhcccHHHHH
Confidence            5666666665553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.91  E-value=8.7e-09  Score=85.59  Aligned_cols=69  Identities=43%  Similarity=0.550  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +..+...|..++..|+|++|+..|+++++.+|++..+++++|.++..++++++|+..++++++++|++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG   72 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence            444555555555555555555555555555555555555555555555555555555555555555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.90  E-value=7.9e-09  Score=95.79  Aligned_cols=82  Identities=16%  Similarity=0.125  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDCS  566 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~~  566 (575)
                      ..+.++|.++++.|+|++|+..|+++++++|++..+++++|.+|..++++++|+..|+++++++|++..   .++.+...
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            566777777777777777777777777777777777777777777777777777777777777777663   34444444


Q ss_pred             HHHhh
Q 008170          567 MLIYL  571 (575)
Q Consensus       567 l~~~~  571 (575)
                      ++++.
T Consensus       169 ~~~~~  173 (198)
T 2fbn_A          169 LKEAR  173 (198)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.90  E-value=1.2e-08  Score=86.40  Aligned_cols=69  Identities=19%  Similarity=0.139  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...+...|..++..|++++|+..|.++++++|++..+++++|.++.+++++++|+..++++++++|++.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE  114 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence            444444555555555555555555555555555555555555555555555555555555555555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.90  E-value=3e-09  Score=109.63  Aligned_cols=90  Identities=11%  Similarity=0.005  Sum_probs=75.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170          485 SIDASELLKEKGNAAFKGKQ-WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV  560 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~-~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~  560 (575)
                      +|++...|.++|..+.+.|+ |++|+..|+++|+++|+++.+|++||.++.++|++++|+.+|+++|+++|++.   ..+
T Consensus       127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l  206 (382)
T 2h6f_A          127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  206 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence            35678888889999998886 99999999999999999999999999999999999999999999999998887   456


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      |.++..+|+|..||
T Consensus       207 g~~~~~~g~~~eAl  220 (382)
T 2h6f_A          207 QWVIQEFKLWDNEL  220 (382)
T ss_dssp             HHHHHHHTCCTTHH
T ss_pred             HHHHHHcCChHHHH
Confidence            66666677776654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.90  E-value=3.9e-09  Score=99.69  Aligned_cols=89  Identities=16%  Similarity=0.021  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-----------GCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l-----------~~~~~Ai~~~~~al~l~P  554 (575)
                      |+....+.++|..+++.|++++|+..|+++++++|+++.+++++|.++.++           |++++|+..++++++++|
T Consensus        36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P  115 (217)
T 2pl2_A           36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP  115 (217)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence            556777888888888888888888888888888888888888888888888           888888888888888888


Q ss_pred             ccH---HHHHHHHHHHHHhhhhh
Q 008170          555 KVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       555 ~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      ++.   ..+|.++..+|++..|+
T Consensus       116 ~~~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A          116 RYAPLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCChHHHH
Confidence            776   35566666666666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.90  E-value=1.7e-09  Score=89.13  Aligned_cols=89  Identities=11%  Similarity=0.149  Sum_probs=75.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHH---HH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--VRA---RV  560 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~--~~~---~~  560 (575)
                      |.....+..+|..+++.|+|++|+..|+++++++|++..+++++|.++.+++++++|+..++++++++|+  +..   .+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            3446678889999999999999999999999999999999999999999999999999999999999998  773   45


Q ss_pred             HHHHHHH-HHhhhhh
Q 008170          561 GYVDCSM-LIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l-~~~~~~i  574 (575)
                      +.++..+ +++..|+
T Consensus        83 ~~~~~~~~~~~~~A~   97 (112)
T 2kck_A           83 ADALRYIEGKEVEAE   97 (112)
T ss_dssp             HHHHTTCSSCSHHHH
T ss_pred             HHHHHHHhCCHHHHH
Confidence            5555555 5555543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.89  E-value=6.6e-09  Score=93.17  Aligned_cols=73  Identities=16%  Similarity=0.120  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      |+....|.++|.++++.|+|++|+..|+++++++|++..+|+++|.+|.++|++++|+.+|+++++++|++..
T Consensus        42 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           42 PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            4568899999999999999999999999999999999999999999999999999999999999999998864

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.88  E-value=6.8e-09  Score=91.95  Aligned_cols=74  Identities=15%  Similarity=0.025  Sum_probs=69.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCcccHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED-CSKTISLDKKVRAR  559 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~-~~~al~l~P~~~~~  559 (575)
                      |++...|..+|.++++.|++++|+..|+++++++|+++.+++++|.+|.+++++++|+.. ++++++++|+++..
T Consensus        62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~  136 (150)
T 4ga2_A           62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV  136 (150)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence            567899999999999999999999999999999999999999999999999999888776 59999999999853

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.88  E-value=8.4e-09  Score=91.17  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |.+...|.++|.++++.|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++
T Consensus        52 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           52 HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            566889999999999999999999999999999999999999999999999999999999999999988765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.88  E-value=8e-09  Score=94.18  Aligned_cols=86  Identities=14%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~  563 (575)
                      +.+..|.++|+.++++|+|++|+..|+++++++|+++.+++++|.+|.++|++++|+..++++++.+|++..   .++.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            346778888888888888999998899888888888888888888888888888888888888888887763   33444


Q ss_pred             HHHHHHhhh
Q 008170          564 DCSMLIYLL  572 (575)
Q Consensus       564 ~~~l~~~~~  572 (575)
                      ....+++..
T Consensus        83 ~~~~~~~~~   91 (184)
T 3vtx_A           83 NFMIDEKQA   91 (184)
T ss_dssp             HHHTTCHHH
T ss_pred             HHHcCCHHH
Confidence            444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.88  E-value=9.8e-09  Score=89.79  Aligned_cols=72  Identities=15%  Similarity=0.116  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |.+...|..+|..+++.|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++
T Consensus        49 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           49 HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            566889999999999999999999999999999999999999999999999999999999999999999765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.88  E-value=5.1e-09  Score=98.19  Aligned_cols=87  Identities=17%  Similarity=0.103  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSN----------------RAAAYLELGCFQQAEEDCSKTIS  551 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~----------------ra~~~~~l~~~~~Ai~~~~~al~  551 (575)
                      .+..+..+|..+++.|+|++|+..|+++++++|+++.+|++                +|.+|.++|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999                99999999999999999999999


Q ss_pred             hCcccH---HHHHHHHHHHHHhhhhh
Q 008170          552 LDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       552 l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      ++|++.   ..+|.++..+|+|..|+
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~  108 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDAL  108 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            999988   56778888888888775

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.86  E-value=6.5e-09  Score=94.80  Aligned_cols=72  Identities=17%  Similarity=0.133  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |.....+..+|..+++.|+|++|++.|+++++++|+++.+|+++|.+|.++|++++|+.+|+++|+++|++.
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          104 TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            455778999999999999999999999999999999999999999999999999999999999999999865

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.86  E-value=1e-08  Score=91.18  Aligned_cols=89  Identities=17%  Similarity=0.159  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH-----H
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR-----V  560 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~-----~  560 (575)
                      |.....+.+.|..+++.|+|++|+..|.++++++|++..+++++|.++.++|++++|+..++++++++|++...     .
T Consensus        44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  123 (166)
T 1a17_A           44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  123 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44566777788888888888888888888888888888888888888888888888888888888888776632     2


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      +......++|..|+
T Consensus       124 ~~~~~~~~~~~~A~  137 (166)
T 1a17_A          124 CNKIVKQKAFERAI  137 (166)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            22244556666654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.85  E-value=1e-08  Score=105.75  Aligned_cols=91  Identities=12%  Similarity=-0.019  Sum_probs=84.0

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccH---HH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKVR---AR  559 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~~---~~  559 (575)
                      .+|+....|..+|..+.+.|+|++|+..|+++|+++|++..+|++||.++.++|+ +++|+.+|+++++++|++.   ..
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~  171 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  171 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            4688999999999999999999999999999999999999999999999999997 9999999999999999988   46


Q ss_pred             HHHHHHHHHHhhhhh
Q 008170          560 VGYVDCSMLIYLLCI  574 (575)
Q Consensus       560 ~~~~~~~l~~~~~~i  574 (575)
                      +|.++..+++|..||
T Consensus       172 ~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          172 RRVLVEWLRDPSQEL  186 (382)
T ss_dssp             HHHHHHHHTCCTTHH
T ss_pred             HHHHHHHccCHHHHH
Confidence            777777778777665

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.85  E-value=5.1e-09  Score=89.16  Aligned_cols=72  Identities=10%  Similarity=-0.046  Sum_probs=64.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |+....|..+|..+.+.|++++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++.
T Consensus        48 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           48 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            567899999999999999999999999999999999999999999999999999999999999999999864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.83  E-value=1.7e-08  Score=85.49  Aligned_cols=88  Identities=33%  Similarity=0.478  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------H--
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV-------R--  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~-------~--  557 (575)
                      +.+..+...|..+++.|+|++|+..|.++++.+|+++.+++++|.++..++++++|+..++++++++|++       .  
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999999998876       4  


Q ss_pred             -HHHHHHHHHHHHhhhhh
Q 008170          558 -ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -~~~~~~~~~l~~~~~~i  574 (575)
                       ..++.++..+++|..|+
T Consensus        82 ~~~la~~~~~~~~~~~A~   99 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAI   99 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhccHHHHH
Confidence             45666666677776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.82  E-value=1.3e-08  Score=96.32  Aligned_cols=84  Identities=19%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC  565 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~  565 (575)
                      ..++++|..+++.|+|++|+..|+++++++| .+..+++++|.++.++|++++|+.+++++++++|++.   ..+|.++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            5555666666666666666666666666665 5555556666666666666666666666666666544   34444444


Q ss_pred             HHHHhhhh
Q 008170          566 SMLIYLLC  573 (575)
Q Consensus       566 ~l~~~~~~  573 (575)
                      .+++|..|
T Consensus        88 ~~~~~~~A   95 (228)
T 4i17_A           88 DMKNNQEY   95 (228)
T ss_dssp             HTTCHHHH
T ss_pred             HcccHHHH
Confidence            45555444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.82  E-value=2.7e-08  Score=100.70  Aligned_cols=70  Identities=9%  Similarity=0.056  Sum_probs=63.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCc
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA-EEDCSKTISLDK  554 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~A-i~~~~~al~l~P  554 (575)
                      +|+....|+++|..+++.|+|++|+..|+++++++|++..++.+++.++.+++++++| ...|+++++.-+
T Consensus       226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4567889999999999999999999999999999999999999999999999999999 557777776533

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.80  E-value=1.5e-08  Score=86.34  Aligned_cols=73  Identities=11%  Similarity=0.049  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      +.....++..|..+++.|+|++|+..|+++++.+|++   +.+++++|.++.++|++++|+..++++++.+|++..
T Consensus        36 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  111 (129)
T 2xev_A           36 VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA  111 (129)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence            3444788889999999999999999999999999888   888999999999999999999999999999888773

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.79  E-value=2.9e-08  Score=83.11  Aligned_cols=72  Identities=13%  Similarity=0.070  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |.....+.+.|..+++.|+|++|+..|+++++++|++..+|+++|.+|.++|++++|+..++++++++|++.
T Consensus        16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            455789999999999999999999999999999999999999999999999999999999999999998643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.78  E-value=5.8e-08  Score=86.20  Aligned_cols=90  Identities=34%  Similarity=0.574  Sum_probs=81.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      ..+.+..+.++|..+++.|+|++|+..|.++++++|++..+++++|.++..++++++|+..++++++++|++.   ..++
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a   88 (166)
T 1a17_A            9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999999999887   4566


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..+++|..|+
T Consensus        89 ~~~~~~~~~~~A~  101 (166)
T 1a17_A           89 ASNMALGKFRAAL  101 (166)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHhccHHHHH
Confidence            6777777777664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.76  E-value=1.4e-08  Score=104.20  Aligned_cols=90  Identities=19%  Similarity=0.155  Sum_probs=77.8

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV  560 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~  560 (575)
                      .++.....|.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.+|.+++++++|+.+|+++++++|++.   ..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999887   345


Q ss_pred             HHHHHHHHHhhhh
Q 008170          561 GYVDCSMLIYLLC  573 (575)
Q Consensus       561 ~~~~~~l~~~~~~  573 (575)
                      +.+...++++..+
T Consensus       348 ~~~~~~~~~~~~a  360 (370)
T 1ihg_A          348 LKVKQKIKAQKDK  360 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.75  E-value=4.5e-08  Score=103.54  Aligned_cols=61  Identities=8%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED  545 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~  545 (575)
                      +|+....|+++|.++++.|+|++|+..|+++++++|++..++.+++.++.++++++++...
T Consensus       347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999988764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.74  E-value=7.6e-08  Score=81.28  Aligned_cols=93  Identities=33%  Similarity=0.564  Sum_probs=82.5

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A  558 (575)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~  558 (575)
                      ...++.....+...|..++..|+|++|+..|+++++.+|++..+++++|.++..++++++|+..++++++++|++.   .
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   84 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG   84 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999999999999999999999887   4


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .++.++..++++..|+
T Consensus        85 ~~~~~~~~~~~~~~A~  100 (131)
T 2vyi_A           85 RMGLALSSLNKHVEAV  100 (131)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCHHHHH
Confidence            5666677777776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.73  E-value=9.4e-09  Score=104.26  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .|.++|.++++.|+|++|+..|+++|+++|++..+|+++|.+|..+++|++|+.+|+++++++|++.
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~  298 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK  298 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            4455555555555555555555555555555555555555555555555555555555555555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.72  E-value=7.5e-08  Score=98.80  Aligned_cols=61  Identities=8%  Similarity=0.070  Sum_probs=56.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEED  545 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~  545 (575)
                      +|+.+..|+.+|..+++.|+|++|+..|+++++++|++..++.+++.++.++++++++.+.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677899999999999999999999999999999999999999999999999998887653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.71  E-value=5.1e-08  Score=88.30  Aligned_cols=89  Identities=19%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCcccH---HH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAA-YLELGCF--QQAEEDCSKTISLDKKVR---AR  559 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~-~~~l~~~--~~Ai~~~~~al~l~P~~~---~~  559 (575)
                      |.....+...|..++..|+|++|+..|.++++++|+++.+++++|.+ +...+++  ++|+..++++++++|++.   ..
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  120 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML  120 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence            34567888899999999999999999999999999888899999988 7788888  999999999999988877   35


Q ss_pred             HHHHHHHHHHhhhhh
Q 008170          560 VGYVDCSMLIYLLCI  574 (575)
Q Consensus       560 ~~~~~~~l~~~~~~i  574 (575)
                      ++.++...++|..|+
T Consensus       121 la~~~~~~g~~~~A~  135 (177)
T 2e2e_A          121 LASDAFMQANYAQAI  135 (177)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcccHHHHH
Confidence            566666667766654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.70  E-value=1e-07  Score=81.06  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=70.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      |+....+...|..+++.|++++|+..|+++++++|++..+++++|.++.+++++++|+..++++++++|++...+.
T Consensus        47 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  122 (133)
T 2lni_A           47 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD  122 (133)
T ss_dssp             TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHH
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHH
Confidence            4457889999999999999999999999999999999999999999999999999999999999999998775333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.70  E-value=1.1e-07  Score=79.54  Aligned_cols=73  Identities=27%  Similarity=0.457  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR  559 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~  559 (575)
                      .....+...|..+++.|++++|+..|.++++.+|++...+++++.++.+++++++|+..++++++++|++...
T Consensus        41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  113 (125)
T 1na0_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA  113 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence            3455667777777777777777777777777777777777777777777777777777777777777776643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.69  E-value=1.3e-07  Score=87.36  Aligned_cols=68  Identities=12%  Similarity=-0.009  Sum_probs=53.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAE-EDCSKTISL  552 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai-~~~~~al~l  552 (575)
                      +|.....+..+|..+++.|+|++|+..|+++++++|++..++.+++.++..++++.++. ..+.+.+..
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45668899999999999999999999999999999999999999999999999998888 455555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=1.3e-07  Score=78.31  Aligned_cols=78  Identities=18%  Similarity=0.140  Sum_probs=71.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      |.....+...|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++...+..+
T Consensus        35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            344778999999999999999999999999999999999999999999999999999999999999999988644433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.69  E-value=3.9e-08  Score=84.34  Aligned_cols=71  Identities=14%  Similarity=0.199  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      |+.+..|.++|.++++.|+|++|++.|+++|+++|++       +.+|+++|.++..++++++|++.|+++|+++|+.
T Consensus        39 p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence            5668899999999999999999999999999998865       4689999999999999999999999999998863

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.68  E-value=6.7e-08  Score=93.59  Aligned_cols=90  Identities=12%  Similarity=0.092  Sum_probs=79.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR----  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~----  557 (575)
                      ++..+..++.+|..++++|+|++|+..|+++++.+|++   ..+++++|.+|+++|+|++|+..|+++++++|++.    
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            45668899999999999999999999999999999999   99999999999999999999999999999998653    


Q ss_pred             --HHHHHHHHH--------HHHhhhhh
Q 008170          558 --ARVGYVDCS--------MLIYLLCI  574 (575)
Q Consensus       558 --~~~~~~~~~--------l~~~~~~i  574 (575)
                        ..+|.++..        .+++..|+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~  117 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAI  117 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHH
Confidence              355666666        67777665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.68  E-value=6.5e-08  Score=91.43  Aligned_cols=86  Identities=21%  Similarity=0.084  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----------H
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR----------A  558 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~----------~  558 (575)
                      ...+..+|..+++.|+|++|+..|+++++++|++..+++++|.+|.++|++++|+..++++++++|++.          .
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  121 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL  121 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            467888999999999999999999999999999999999999999999999999999999999999876          3


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .+|.++..+++|..|+
T Consensus       122 ~~g~~~~~~~~~~~A~  137 (228)
T 4i17_A          122 KEGQKFQQAGNIEKAE  137 (228)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHhHHHHHhccHHHHH
Confidence            4555566666666654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.66  E-value=9.6e-08  Score=88.98  Aligned_cols=87  Identities=13%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----------
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR----------  557 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~----------  557 (575)
                      .+..+.+.|..+++.|+|++|+..|+++++++|+++.+++++|.+|.++|++++|+.++++++++.|++.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            3679999999999999999999999999999999999999999999999999999999999999887533          


Q ss_pred             ---------HHHHHHHHHHHHhhhhh
Q 008170          558 ---------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 ---------~~~~~~~~~l~~~~~~i  574 (575)
                               ..++.++..+++|..|+
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~  141 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAE  141 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHH
Confidence                     46777777777777664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.66  E-value=1.3e-07  Score=81.27  Aligned_cols=70  Identities=19%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      |.....+.++|..+++.|+|++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|+
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           40 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            4457899999999999999999999999999999999999999999999999999999999999999998

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.64  E-value=9.5e-08  Score=101.57  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |+.+..|.++|..++++|+|++|++.|+++++++|+++.+++++|.+|.++|++++|++.++++++++|++.   ..++.
T Consensus        37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  116 (477)
T 1wao_1           37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  116 (477)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            455889999999999999999999999999999999999999999999999999999999999999999876   34444


Q ss_pred             H--HHHHHHhhhhh
Q 008170          563 V--DCSMLIYLLCI  574 (575)
Q Consensus       563 ~--~~~l~~~~~~i  574 (575)
                      +  +...++|..|+
T Consensus       117 ~~~~~~~g~~~~A~  130 (477)
T 1wao_1          117 CNKIVKQKAFERAI  130 (477)
T ss_dssp             HHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            4  66678888776

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.64  E-value=1.7e-08  Score=107.44  Aligned_cols=89  Identities=35%  Similarity=0.576  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      ++.+..+.++|+.++++|+|++|++.|+++++++|+++.+|+++|.+|.+++++++|+++++++++++|++.   ..+|.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            567778889999999999999999999999999999999999999999999999999999999999999987   46777


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+++|..|+
T Consensus        83 ~~~~~g~~~eA~   94 (477)
T 1wao_1           83 SNMALGKFRAAL   94 (477)
T ss_dssp             HHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            788888887775

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.63  E-value=1.9e-07  Score=89.07  Aligned_cols=90  Identities=31%  Similarity=0.423  Sum_probs=80.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      +|.....+...|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++.   ..++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  214 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA  214 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            4778899999999999999999999999999999999999999999999999999999999999999999987   4566


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..++++..|+
T Consensus       215 ~~~~~~g~~~~A~  227 (258)
T 3uq3_A          215 TAQIAVKEYASAL  227 (258)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHHhhHHHHH
Confidence            6777777776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=3.2e-07  Score=79.61  Aligned_cols=92  Identities=27%  Similarity=0.301  Sum_probs=82.6

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--  557 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--  557 (575)
                      ..++..+..++.+|..+++.|+|++|+..|+++++++|++   ..+++++|.++.+++++++|+..++++++++|++.  
T Consensus        22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            3456778999999999999999999999999999999998   89999999999999999999999999999999887  


Q ss_pred             -HHHHHHHHHHHHhhhhh
Q 008170          558 -ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -~~~~~~~~~l~~~~~~i  574 (575)
                       ..++.++..+++|..|+
T Consensus       102 ~~~~a~~~~~~~~~~~A~  119 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAV  119 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHH
Confidence             45677777777777664

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.62  E-value=4.7e-08  Score=86.35  Aligned_cols=68  Identities=19%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHH---HHHHHHHHH
Q 008170          501 KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCF----------QQAEEDCSKTISLDKKVRA---RVGYVDCSM  567 (575)
Q Consensus       501 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~----------~~Ai~~~~~al~l~P~~~~---~~~~~~~~l  567 (575)
                      +.++|++|+..|+++++++|+++.+|+|+|.++.+++++          ++|+..|+++|+++|++..   .+|.++..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            556799999999999999999999999999999999875          5999999999999999884   455555555


Q ss_pred             H
Q 008170          568 L  568 (575)
Q Consensus       568 ~  568 (575)
                      +
T Consensus        94 g   94 (158)
T 1zu2_A           94 A   94 (158)
T ss_dssp             H
T ss_pred             c
Confidence            4

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.62  E-value=1.6e-07  Score=90.75  Aligned_cols=90  Identities=18%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      ++..+..+..+|..++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+..++++++++|++.   ..++
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            3677888888999999999999999999999999998888999999999999999999999999999888766   4566


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..+++|..|+
T Consensus       119 ~~~~~~g~~~~A~  131 (275)
T 1xnf_A          119 IALYYGGRDKLAQ  131 (275)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHhccHHHHH
Confidence            6666667766654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.62  E-value=3.2e-07  Score=77.87  Aligned_cols=85  Identities=13%  Similarity=0.069  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---H---HHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA---TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV---R---ARV  560 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~---~---~~~  560 (575)
                      ..++++|..+++.|+|++|+..|+++++.+|++.   .+++++|.++.++|++++|+..++++++++|++   .   ..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3578899999999999999999999999999988   899999999999999999999999999999998   4   456


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      +.++..+|++..|+
T Consensus        83 a~~~~~~g~~~~A~   96 (129)
T 2xev_A           83 GLSQYGEGKNTEAQ   96 (129)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            77777778887765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.62  E-value=1.7e-08  Score=84.95  Aligned_cols=74  Identities=19%  Similarity=0.151  Sum_probs=63.2

Q ss_pred             HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          501 KGKQWNKAVNYYSEAIKL---NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       501 ~~g~~~~Ai~~~~~al~~---~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      .+|+|++|+..|++++++   +|++..+++++|.+|.++|+|++|+..++++++++|++.   ..++.++..+|+|..|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   699999999999999999999999999999999999988   46777777788887765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.59  E-value=7.8e-08  Score=106.99  Aligned_cols=88  Identities=14%  Similarity=-0.076  Sum_probs=75.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      +|+....+..+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+.+|+++++++|++.   ..+|
T Consensus       429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  508 (681)
T 2pzi_A          429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA  508 (681)
T ss_dssp             CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            4666788899999999999999999999999999999999999999999999999999999999999999876   4566


Q ss_pred             HHHHHHHHhhh
Q 008170          562 YVDCSMLIYLL  572 (575)
Q Consensus       562 ~~~~~l~~~~~  572 (575)
                      .++..+|+|..
T Consensus       509 ~~~~~~g~~~~  519 (681)
T 2pzi_A          509 ATAELAGNTDE  519 (681)
T ss_dssp             HHHHHHTCCCT
T ss_pred             HHHHHcCChHH
Confidence            77777777654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.57  E-value=6.4e-07  Score=74.72  Aligned_cols=87  Identities=26%  Similarity=0.377  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ....+...|..+++.|++++|+..|.++++.+|++..++++++.++.+.+++++|+..++++++++|++.   ..++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            3778999999999999999999999999999999999999999999999999999999999999999877   3556666


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ...+++..|+
T Consensus        88 ~~~~~~~~A~   97 (125)
T 1na0_A           88 YKQGDYDEAI   97 (125)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHhcCHHHHH
Confidence            6666666553

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.54  E-value=1.6e-07  Score=100.51  Aligned_cols=89  Identities=26%  Similarity=0.405  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      .+.+..|+++|+.++++|+|++|+..|+++++.+|+++.+++++|.+|.++|++++|+..|+++++++|++.   ..++.
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  101 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999999999988   46677


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+|++..|+
T Consensus       102 ~~~~~g~~~~A~  113 (537)
T 3fp2_A          102 ANESLGNFTDAM  113 (537)
T ss_dssp             HHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            777778877765

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.54  E-value=3.8e-07  Score=84.99  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +..+..+...|..+++.|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..++++++++|++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~   76 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA   76 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            344455555555555555555555555555555555555555555555555555555555555555555444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.53  E-value=2.3e-07  Score=98.52  Aligned_cols=89  Identities=19%  Similarity=0.082  Sum_probs=81.7

Q ss_pred             hhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170          486 IDASELLKEKGNAAFKG--------KQWNKAVNYYSEAIKLNG---TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~--------g~~~~Ai~~~~~al~~~p---~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P  554 (575)
                      |+....|.++|..++..        |+|++|+..|+++++++|   +++.+|+++|.+|.++|++++|+..|+++++++|
T Consensus       210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  289 (474)
T 4abn_A          210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP  289 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            45678999999999999        999999999999999999   9999999999999999999999999999999999


Q ss_pred             ccH---HHHHHHHHHHHHhhhhh
Q 008170          555 KVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       555 ~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      ++.   ..++.++..++++..|+
T Consensus       290 ~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          290 AWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
Confidence            988   46677778888887765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.52  E-value=4.6e-07  Score=90.85  Aligned_cols=87  Identities=20%  Similarity=0.153  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      +++.+..+|..+++.|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..++++++++|++.   ..++.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            3567777888888888888888888888888888888888888888888888888888888888887766   4556666


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ...++|..|+
T Consensus        82 ~~~~~~~~A~   91 (359)
T 3ieg_A           82 LKQGKLDEAE   91 (359)
T ss_dssp             HHHTCHHHHH
T ss_pred             HHcCChHHHH
Confidence            6666666554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.52  E-value=3.4e-07  Score=73.71  Aligned_cols=73  Identities=12%  Similarity=0.020  Sum_probs=67.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +|+++..+..+|..++..++   .++|...++++++++|+++.+++.+|..+++.|+|++|+..++++++.+|+.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            46678999999999976655   79999999999999999999999999999999999999999999999999843

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.51  E-value=6.2e-08  Score=107.81  Aligned_cols=89  Identities=10%  Similarity=-0.078  Sum_probs=81.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      +|++...|+++|..+++.|+|++|+..|+++++++|+++.+|+++|.++.++|++++ +.+|+++++++|++.   ..+|
T Consensus       463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg  541 (681)
T 2pzi_A          463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLA  541 (681)
T ss_dssp             HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence            356688999999999999999999999999999999999999999999999999999 999999999999987   4677


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..+|+|..|+
T Consensus       542 ~~~~~~g~~~~A~  554 (681)
T 2pzi_A          542 RARSAEGDRVGAV  554 (681)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            7777788887775

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.51  E-value=3.4e-07  Score=92.92  Aligned_cols=87  Identities=11%  Similarity=0.177  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      .+..+.+.|..+.+.|+|++|+..|+++++++|+++.+|+++|.++.++|++++|+..|+++++++|++.   ..++.++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999999887   4677777


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ..+|+|..|+
T Consensus       292 ~~~g~~~~A~  301 (365)
T 4eqf_A          292 INLGAYREAV  301 (365)
T ss_dssp             HHHTCCHHHH
T ss_pred             HHCCCHHHHH
Confidence            7788877765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.50  E-value=3.6e-07  Score=96.92  Aligned_cols=88  Identities=25%  Similarity=0.432  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      .+.+..|+++|+.+++.|+|++|+..|+++++.+| ++.+++++|.++.++|++++|+.+++++++++|++.   ..++.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            46788999999999999999999999999999998 689999999999999999999999999999999987   45677


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+|+|..|+
T Consensus        82 ~~~~~g~~~~A~   93 (514)
T 2gw1_A           82 ANEGLGKFADAM   93 (514)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHHhhHHHHH
Confidence            777777777665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.50  E-value=2.6e-07  Score=100.33  Aligned_cols=90  Identities=10%  Similarity=-0.017  Sum_probs=68.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      +|+....+.++|..++++|+|++|++.|+++++++|++..+++++|.+|.++|++++|++.++++++++|++.   ..++
T Consensus        53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  132 (568)
T 2vsy_A           53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL  132 (568)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4556777888888888888888888888888888888888888888888888888888888888888888776   3455


Q ss_pred             HHHHHH---HHhhhhh
Q 008170          562 YVDCSM---LIYLLCI  574 (575)
Q Consensus       562 ~~~~~l---~~~~~~i  574 (575)
                      .++..+   +++..|+
T Consensus       133 ~~~~~~~~~g~~~~A~  148 (568)
T 2vsy_A          133 NWRRRLCDWRALDVLS  148 (568)
T ss_dssp             HHHHHTTCCTTHHHHH
T ss_pred             HHHHHhhccccHHHHH
Confidence            555555   5555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.49  E-value=1.5e-06  Score=71.46  Aligned_cols=75  Identities=16%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      +...++.|..++++++|.+|+..|.+|++..       +....++.++|.|++++|++++|+..++++++++|++...+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            5677899999999999999999999999873       345889999999999999999999999999999999986444


Q ss_pred             HH
Q 008170          562 YV  563 (575)
Q Consensus       562 ~~  563 (575)
                      ..
T Consensus        85 n~   86 (104)
T 2v5f_A           85 NL   86 (104)
T ss_dssp             HH
T ss_pred             hH
Confidence            33

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.49  E-value=3e-07  Score=75.34  Aligned_cols=70  Identities=19%  Similarity=0.224  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCccc
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT--SATYYSNRAAAYLEL-GCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~ra~~~~~l-~~~~~Ai~~~~~al~l~P~~  556 (575)
                      .....+.+.|..+++.|+|++|+..|+++++++|+  +..+++++|.++.++ +++++|++.++++++.+|+.
T Consensus        38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           38 EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            34678999999999999999999999999999999  999999999999999 99999999999999999875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.48  E-value=7e-07  Score=80.20  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      .....+...|..+++.|++++|++.|+++++.+|++..++.++|.++.++|++++|+..++++++++|++.   ..++.+
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  153 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS  153 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            44678889999999999999999999999999999999999999999999999999999999999999876   456666


Q ss_pred             HHHHHHhhhhh
Q 008170          564 DCSMLIYLLCI  574 (575)
Q Consensus       564 ~~~l~~~~~~i  574 (575)
                      +...+++..|+
T Consensus       154 ~~~~~~~~~A~  164 (186)
T 3as5_A          154 YEQMGRHEEAL  164 (186)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHcCCHHHHH
Confidence            66667766654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.48  E-value=3.5e-07  Score=92.88  Aligned_cols=87  Identities=11%  Similarity=-0.064  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ....++++|..+++.|+|++|+..|+++++.+|+++.+++++|.++.++|++++|+..|+++++++|++.   ..++.++
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3445677777777777777777777777777777777777777777777777777777777777777766   3455555


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ..+|+|..|+
T Consensus       144 ~~~g~~~~A~  153 (365)
T 4eqf_A          144 TNTSHQQDAC  153 (365)
T ss_dssp             HHTTCHHHHH
T ss_pred             HccccHHHHH
Confidence            5556655543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.47  E-value=8e-07  Score=79.81  Aligned_cols=89  Identities=10%  Similarity=-0.002  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      +.....+...|..+++.|++++|+..|.++++.+|++..++.+++.++...+++++|+..++++++++|++.   ..++.
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  118 (186)
T 3as5_A           39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV  118 (186)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence            345788999999999999999999999999999999999999999999999999999999999999999887   34566


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++...+++..|+
T Consensus       119 ~~~~~~~~~~A~  130 (186)
T 3as5_A          119 ALDNLGRFDEAI  130 (186)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcCcHHHHH
Confidence            666667776654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.47  E-value=5e-07  Score=84.06  Aligned_cols=86  Identities=22%  Similarity=0.272  Sum_probs=75.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      ..++..++++|+.+++.|+|++|+..|++++  +| ++.+++++|.+|.++|++++|+..|+++++++|++.   ..+|.
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~   79 (213)
T 1hh8_A            3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            4567788999999999999999999999996  44 789999999999999999999999999999999987   45677


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+++|..|+
T Consensus        80 ~~~~~~~~~~A~   91 (213)
T 1hh8_A           80 LYYQTEKYDLAI   91 (213)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcccHHHHH
Confidence            777778887765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.47  E-value=6.4e-07  Score=93.50  Aligned_cols=91  Identities=20%  Similarity=0.156  Sum_probs=68.1

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARV  560 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~  560 (575)
                      .+|..+..+..+|..+++.|+|++|+..|+++++.+|+++.+++++|.++.++|++++|+..++++++++|++.   ..+
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  100 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR  100 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            34677778888888888888888888888888888888888888888888888888888888888888887766   345


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      +.++..+|++..|+
T Consensus       101 ~~~~~~~g~~~~A~  114 (450)
T 2y4t_A          101 GHLLLKQGKLDEAE  114 (450)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            55566666665553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.46  E-value=7.2e-07  Score=75.30  Aligned_cols=87  Identities=28%  Similarity=0.391  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ....+...|..+++.|++++|+..|.++++.+|++...+++++.++...+++++|+..++++++.+|++.   ..++.++
T Consensus        34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  113 (136)
T 2fo7_A           34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY  113 (136)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            4678888999999999999999999999999999999999999999999999999999999999999876   3455555


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ...+++..|+
T Consensus       114 ~~~~~~~~A~  123 (136)
T 2fo7_A          114 YKQGDYDEAI  123 (136)
T ss_dssp             HTTTCHHHHH
T ss_pred             HHHccHHHHH
Confidence            5556665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.46  E-value=6e-07  Score=85.56  Aligned_cols=88  Identities=26%  Similarity=0.370  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------H-
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV-------R-  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~-------~-  557 (575)
                      +..++.+.++|..+++.|+|++|+..|+++++++ +++.+++++|.++..+|++++|+..++++++++|++       . 
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            4678899999999999999999999999999999 999999999999999999999999999999999875       3 


Q ss_pred             --HHHHHHHHHHHHhhhhh
Q 008170          558 --ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 --~~~~~~~~~l~~~~~~i  574 (575)
                        ..++.++..+++|..|+
T Consensus        81 ~~~~l~~~~~~~~~~~~A~   99 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTI   99 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHH
Confidence              45666777777776664

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.45  E-value=6.7e-07  Score=85.38  Aligned_cols=89  Identities=12%  Similarity=0.031  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccH---HHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS--LDKKVR---ARV  560 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~--l~P~~~---~~~  560 (575)
                      |.....+...|..+++.|++++|++.|.++++.+|++..++++++.++..+|++++|+..++++++  .+|++.   ..+
T Consensus        68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  147 (252)
T 2ho1_A           68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL  147 (252)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence            445667777777777777777777777777777777777777777777777777777777777777  566544   345


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      +.++...+++..|+
T Consensus       148 a~~~~~~g~~~~A~  161 (252)
T 2ho1_A          148 GLVSLQMKKPAQAK  161 (252)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            55556666666554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.45  E-value=8.6e-07  Score=89.71  Aligned_cols=87  Identities=10%  Similarity=0.090  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ....+...|..+++.|++++|+..|+++++++|+++.+++++|.++.++|++++|+..|+++++++|++.   ..++.++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999999999999877   4677777


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ..+|+|..|+
T Consensus       296 ~~~g~~~~A~  305 (368)
T 1fch_A          296 INLGAHREAV  305 (368)
T ss_dssp             HHHTCHHHHH
T ss_pred             HHCCCHHHHH
Confidence            7788887765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.44  E-value=9.6e-07  Score=85.24  Aligned_cols=88  Identities=17%  Similarity=0.040  Sum_probs=74.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH--HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA--RVGYV  563 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~--~~~~~  563 (575)
                      |.....+...|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++..  ....+
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  153 (275)
T 1xnf_A           74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL  153 (275)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            3457789999999999999999999999999999999999999999999999999999999999999999872  22223


Q ss_pred             HHHHHHhhhh
Q 008170          564 DCSMLIYLLC  573 (575)
Q Consensus       564 ~~~l~~~~~~  573 (575)
                      ....+++..|
T Consensus       154 ~~~~~~~~~A  163 (275)
T 1xnf_A          154 AEQKLDEKQA  163 (275)
T ss_dssp             HHHHHCHHHH
T ss_pred             HHHhcCHHHH
Confidence            3344555444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.43  E-value=7.6e-07  Score=96.69  Aligned_cols=89  Identities=4%  Similarity=-0.188  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |+....+.++|..++++|+|++|++.|+++++++|++..+++++|.+|.++|++++|++.++++++++|++.   ..++.
T Consensus        20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   99 (568)
T 2vsy_A           20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH   99 (568)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            556778888999999999999999999999999999999999999999999999999999999999988877   45666


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++..+++|..|+
T Consensus       100 ~~~~~g~~~~A~  111 (568)
T 2vsy_A          100 ALEDAGQAEAAA  111 (568)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            666667776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.43  E-value=4.4e-07  Score=96.36  Aligned_cols=88  Identities=14%  Similarity=0.099  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCccc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL---------GCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l---------~~~~~Ai~~~~~al~l~P~~  556 (575)
                      |+....|..+|..+++.|+|++|+.+|+++++++|+ ..+++++|.++..+         +++++|+..|+++++++|++
T Consensus       134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence            456789999999999999999999999999999999 79999999999999         99999999999999999998


Q ss_pred             HH---HHHHHHHHH--------HHhhhhh
Q 008170          557 RA---RVGYVDCSM--------LIYLLCI  574 (575)
Q Consensus       557 ~~---~~~~~~~~l--------~~~~~~i  574 (575)
                      ..   .+|.++..+        ++|..|+
T Consensus       213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          213 GRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            84   556666666        7787775

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.43  E-value=9.2e-07  Score=74.65  Aligned_cols=85  Identities=28%  Similarity=0.400  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDCS  566 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~~  566 (575)
                      ..+...|..+++.|++++|+..|.++++.+|++...+++++.++...+++++|+..++++++++|++..   .++.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999998763   45555555


Q ss_pred             HHHhhhhh
Q 008170          567 MLIYLLCI  574 (575)
Q Consensus       567 l~~~~~~i  574 (575)
                      .+++..|+
T Consensus        82 ~~~~~~A~   89 (136)
T 2fo7_A           82 QGDYDEAI   89 (136)
T ss_dssp             TTCHHHHH
T ss_pred             hcCHHHHH
Confidence            56665553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.42  E-value=1.2e-06  Score=82.76  Aligned_cols=87  Identities=15%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ....+...|..+++.|++++|+..|+++++.+|++..+++++|.++.++|++++|+..++++++.+|++.   ..++.++
T Consensus       124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3455666777777777777777777777777777777777777777777777777777777777776655   3445555


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ...+++..|+
T Consensus       204 ~~~~~~~~A~  213 (243)
T 2q7f_A          204 AYKENREKAL  213 (243)
T ss_dssp             HHTTCTTHHH
T ss_pred             HHccCHHHHH
Confidence            5555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.42  E-value=1.2e-06  Score=82.84  Aligned_cols=89  Identities=10%  Similarity=0.099  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      +.....+...|..+++.|++++|+..|+++++.+|++..++.++|.++.++|++++|+..++++++++|++.   ..++.
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  167 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM  167 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            344566667777777777777777777777777777777777777777777777777777777777777655   34555


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++...++|..|+
T Consensus       168 ~~~~~~~~~~A~  179 (243)
T 2q7f_A          168 CLANEGMLDEAL  179 (243)
T ss_dssp             HHHHHTCCHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            555566665553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=3.7e-07  Score=93.59  Aligned_cols=88  Identities=18%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |..+..|..+|..+++.|++++|+..|+++++++|++..+|.+++.++.++|++++|+..++++++++|++.   ..++.
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  143 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN  143 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            344667777777777777777777777777777777777777777777777777777777777777777655   23444


Q ss_pred             HHHHHHHhhhh
Q 008170          563 VDCSMLIYLLC  573 (575)
Q Consensus       563 ~~~~l~~~~~~  573 (575)
                      ++..+|++..|
T Consensus       144 ~~~~~g~~~~A  154 (388)
T 1w3b_A          144 LLKALGRLEEA  154 (388)
T ss_dssp             HHHTTSCHHHH
T ss_pred             HHHHccCHHHH
Confidence            44444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.42  E-value=1.1e-06  Score=83.07  Aligned_cols=69  Identities=10%  Similarity=0.101  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +..++++|..++++|+|++|+..|+++++..|++   ..+++++|.+++++|+|++|+..|+++++++|++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            5678999999999999999999999999999876   47999999999999999999999999999999876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.41  E-value=1.1e-06  Score=74.03  Aligned_cols=69  Identities=14%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .....+.+.|..+++.|+|++|+..|.++++++|++       ..+++++|.++.+++++++|+..++++++++|+
T Consensus        36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           36 TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            346789999999999999999999999999999877       999999999999999999999999999999984

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.39  E-value=4.5e-07  Score=89.14  Aligned_cols=71  Identities=18%  Similarity=0.161  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      |.....+.++|..+++.|+|++|+..|+++++++|++..+++++|.+|.++|++++|+.+++++++++|++
T Consensus        35 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999976

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.38  E-value=3.5e-07  Score=92.56  Aligned_cols=73  Identities=15%  Similarity=0.060  Sum_probs=31.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL-ELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~-~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +|++...|+++|..++..|+|++|+..|+++++++|++..++.+++.+.. ..++.+++...|.++++++|++.
T Consensus       260 ~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          260 EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            46678899999999999999999999999999999999999999999955 45678889999999999999876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.37  E-value=1e-06  Score=83.31  Aligned_cols=72  Identities=17%  Similarity=0.027  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT---YYSNRAAAYLE------------------LGCFQQAEE  544 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~---~~~~ra~~~~~------------------l~~~~~Ai~  544 (575)
                      +.....++.+|..+++.|+|++|+..|+++++.+|++..   +++++|.++.+                  ++++++|+.
T Consensus        38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  117 (225)
T 2yhc_A           38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS  117 (225)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence            445678999999999999999999999999999999864   89999999987                  578999999


Q ss_pred             HHHHHHHhCcccH
Q 008170          545 DCSKTISLDKKVR  557 (575)
Q Consensus       545 ~~~~al~l~P~~~  557 (575)
                      .|+++++.+|++.
T Consensus       118 ~~~~~l~~~P~~~  130 (225)
T 2yhc_A          118 DFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHHHHTTCTTCT
T ss_pred             HHHHHHHHCcCCh
Confidence            9999999999876

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.36  E-value=1.2e-06  Score=89.69  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +....+.+.|..+++.|++++|+..|+++++++|+++.++++++.++.++|++++|+..++++++++|++.
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  305 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA  305 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence            33555566666666666666666666666666666666666666666666666666666666666666554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.36  E-value=1.2e-06  Score=88.63  Aligned_cols=89  Identities=17%  Similarity=0.148  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV---------  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~---------  556 (575)
                      |+....+...|..+.+.|++++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++         
T Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  327 (368)
T 1fch_A          248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA  327 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence            44577899999999999999999999999999999999999999999999999999999999999999987         


Q ss_pred             --H---HHHHHHHHHHHHhhhhh
Q 008170          557 --R---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       557 --~---~~~~~~~~~l~~~~~~i  574 (575)
                        .   ..++.++..+|++..|.
T Consensus       328 ~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          328 MSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             CCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             hhhHHHHHHHHHHHHhCChHhHH
Confidence              3   46777788888877653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.35  E-value=1.7e-06  Score=83.58  Aligned_cols=82  Identities=10%  Similarity=-0.010  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHH
Q 008170          486 IDASELLKEKGNAAFK--------GKQWNKAVNYYSEAIKLNGTSATYY-----------------SNRAAAYLELGCFQ  540 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~--------~g~~~~Ai~~~~~al~~~p~~~~~~-----------------~~ra~~~~~l~~~~  540 (575)
                      +.....++..|.++++        .|++++|+..|+++++.+|++..+.                 +++|.+|.++|+++
T Consensus        86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  165 (261)
T 3qky_A           86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE  165 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence            4567889999999999        9999999999999999999986555                 89999999999999


Q ss_pred             HHHHHHHHHHHhCcccH------HHHHHHHHHH
Q 008170          541 QAEEDCSKTISLDKKVR------ARVGYVDCSM  567 (575)
Q Consensus       541 ~Ai~~~~~al~l~P~~~------~~~~~~~~~l  567 (575)
                      +|+..|+++++.+|++.      ..++.++..+
T Consensus       166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            99999999999999843      3455555544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.34  E-value=1.3e-06  Score=86.17  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .....+.++|..++++|++++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|+
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~  183 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD  183 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence            457788999999999999999999999999999999999999999999999999988777776655554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.33  E-value=2.2e-06  Score=84.74  Aligned_cols=88  Identities=14%  Similarity=0.140  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      .....+...|..+++.|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|++.   ..++.+
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999877   456667


Q ss_pred             HHHHHHhhhhh
Q 008170          564 DCSMLIYLLCI  574 (575)
Q Consensus       564 ~~~l~~~~~~i  574 (575)
                      +..++++..|+
T Consensus       250 ~~~~g~~~~A~  260 (327)
T 3cv0_A          250 YSNMSQYDLAA  260 (327)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHhccHHHHH
Confidence            77777776664

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.32  E-value=3.3e-06  Score=80.46  Aligned_cols=89  Identities=10%  Similarity=-0.006  Sum_probs=77.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~  561 (575)
                      .+.....+...|..+++.|++++|+..|.++++.+|++..++++++.++.++|++++|+..++++++.+|++..   .++
T Consensus       137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  216 (252)
T 2ho1_A          137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI  216 (252)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999998773   445


Q ss_pred             HHHHHHHHhhhh
Q 008170          562 YVDCSMLIYLLC  573 (575)
Q Consensus       562 ~~~~~l~~~~~~  573 (575)
                      .++...+++..|
T Consensus       217 ~~~~~~g~~~~A  228 (252)
T 2ho1_A          217 RLAKVFEDRDTA  228 (252)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHccCHHHH
Confidence            555555666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.31  E-value=1.4e-06  Score=72.54  Aligned_cols=69  Identities=9%  Similarity=-0.044  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       506 ~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      ++|+..|.++++.+|+++.+++++|.++..+|++++|+..|+++++++|++.   ..++.++..+|++..|+
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            3688999999999999999999999999999999999999999999999987   46677777778877664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.28  E-value=3.1e-06  Score=78.64  Aligned_cols=75  Identities=15%  Similarity=0.017  Sum_probs=63.5

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHH
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK-KVRA  558 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P-~~~~  558 (575)
                      ..+.....+...|..+++.|++++|+..|+++++.+|++..++.+++.++.++|++++|+..++++++++| ++..
T Consensus       108 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  183 (225)
T 2vq2_A          108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD  183 (225)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence            44566778888888888888888888888888888888888888888888888888888888888888888 7664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.27  E-value=1.7e-06  Score=85.32  Aligned_cols=66  Identities=12%  Similarity=-0.025  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCc
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLEL-GCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l-~~~~~Ai~~~~~al~l~P  554 (575)
                      +..|.+.|+.+.+.|+|++|+.+|++++++.+..      +.++.++|.+|..+ |++++|+..|++++++.|
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~  149 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555555544322      33455555555553 555555555555555544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.27  E-value=3e-06  Score=76.60  Aligned_cols=71  Identities=8%  Similarity=-0.041  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHhhhhh
Q 008170          504 QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-----ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       504 ~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-----~~~~~~~~~l~~~~~~i  574 (575)
                      +..+|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|++.     ..++.++..+|++..++
T Consensus        89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            334568888888999999999999999999999999999999999999998752     45677777777665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.26  E-value=2.8e-06  Score=83.97  Aligned_cols=89  Identities=18%  Similarity=0.187  Sum_probs=78.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK----------  555 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~----------  555 (575)
                      |.....+...|..+++.|++++|+..|+++++++|++..++++++.++.++|++++|+..++++++++|+          
T Consensus       203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  282 (327)
T 3cv0_A          203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR  282 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CC
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchh
Confidence            4457789999999999999999999999999999999999999999999999999999999999999998          


Q ss_pred             --cH---HHHHHHHHHHHHhhhhh
Q 008170          556 --VR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       556 --~~---~~~~~~~~~l~~~~~~i  574 (575)
                        +.   ..++.++..+|++..|+
T Consensus       283 ~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          283 EATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCHHHHH
Confidence              44   45666777777776553

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.26  E-value=5.2e-07  Score=81.72  Aligned_cols=64  Identities=14%  Similarity=0.030  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P  554 (575)
                      .+.++|..+++.|++++|+..|+++++++|+++.+++++|.++.++|++++|+..++++++++|
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            4455555555555555555555555555555555555555555555555555555555555554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.26  E-value=2.4e-06  Score=84.25  Aligned_cols=88  Identities=16%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170          487 DASELLKEKGNAAFKG-KQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--  557 (575)
                      ..+..+.+.|..+.++ |+|++|+.+|++++++.|.+      ..++.++|.++.++|+|++|+..|+++++++|++.  
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            4577899999999997 99999999999999998754      57899999999999999999999999999998743  


Q ss_pred             --------HHHHHHHHHHHHhhhhh
Q 008170          558 --------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 --------~~~~~~~~~l~~~~~~i  574 (575)
                              ..+|.++..+|++..|+
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~  219 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAA  219 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                    34566677777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.25  E-value=4.9e-06  Score=82.17  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ-AEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~-Ai~~~~~al~l~P~~~~  558 (575)
                      |.+...+.++|..+.+.|+|++|+..|+++++++|+++.+++|++.++..+|++.+ +.+.++++++++|+++.
T Consensus       197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~  270 (291)
T 3mkr_A          197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF  270 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence            34578999999999999999999999999999999999999999999999999976 56888999999999984

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.25  E-value=2.6e-06  Score=84.42  Aligned_cols=89  Identities=15%  Similarity=-0.005  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |+....+...|..+++.|++++|+..|+++++++|++...+.++|.++..++++++|+..++++++++|++.   ..++.
T Consensus       122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~  201 (330)
T 3hym_B          122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV  201 (330)
T ss_dssp             TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            344677999999999999999999999999999999999999999999999999999999999999999887   45666


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++...++|..|+
T Consensus       202 ~~~~~~~~~~A~  213 (330)
T 3hym_B          202 VAFQNGEWKTAE  213 (330)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcccHHHHH
Confidence            677777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.25  E-value=2.8e-06  Score=83.90  Aligned_cols=75  Identities=13%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhh
Q 008170          497 NAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDCSMLIYL  571 (575)
Q Consensus       497 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~~l~~~~  571 (575)
                      +.+...|++++|+..|+++++.+|+++.+++++|.++.++|++++|+..++++++++|+++.   .++.++..+|++.
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence            44445699999999999999999999999999999999999999999999999999999984   4455555555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.25  E-value=5.1e-06  Score=74.83  Aligned_cols=71  Identities=17%  Similarity=0.160  Sum_probs=67.0

Q ss_pred             hHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          487 DASELLKEKGNA-AFKGKQW--NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~-~~~~g~~--~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .....+.+.|.. +++.|++  ++|+..|+++++++|++..+++++|.++..+|++++|+..++++++++|++.
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            346788999999 8899999  9999999999999999999999999999999999999999999999999875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.25  E-value=3.1e-06  Score=83.86  Aligned_cols=85  Identities=16%  Similarity=0.271  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN---------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR--  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~---------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~--  557 (575)
                      ...+...|..+++.|++++|+..|++++++.         |.+..+++++|.++.++|++++|+..++++++++|++.  
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  272 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST  272 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHH
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHH
Confidence            4445555555555555555555555555543         34445555555555555555555555555555555443  


Q ss_pred             -HHHHHHHHHHHHhhhh
Q 008170          558 -ARVGYVDCSMLIYLLC  573 (575)
Q Consensus       558 -~~~~~~~~~l~~~~~~  573 (575)
                       ..++.++..+|++..|
T Consensus       273 ~~~la~~~~~~g~~~~A  289 (330)
T 3hym_B          273 YSAIGYIHSLMGNFENA  289 (330)
T ss_dssp             HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHhccHHHH
Confidence             2344444444444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.23  E-value=1.9e-06  Score=83.21  Aligned_cols=88  Identities=8%  Similarity=0.075  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~  558 (575)
                      |+....+..+|..+++.|+|++|+..|+++++ .|++    ..+|+++|.++..+|++++|+..++++++++|++.   .
T Consensus        34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  112 (272)
T 3u4t_A           34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG  112 (272)
T ss_dssp             CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence            44556788899999999999999999999998 4333    45689999999999999999999999999999876   4


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .++.++..+++|..|+
T Consensus       113 ~l~~~~~~~~~~~~A~  128 (272)
T 3u4t_A          113 QIGSYFYNKGNFPLAI  128 (272)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHccCHHHHH
Confidence            6777777788887765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.22  E-value=3.1e-06  Score=81.60  Aligned_cols=90  Identities=13%  Similarity=0.056  Sum_probs=79.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL----  552 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l----  552 (575)
                      .+.....+.+.|..++..|+|++|+..|.+++++        +|....++.++|.++..+|++++|+..+++++++    
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            4778899999999999999999999999999998        4667889999999999999999999999999998    


Q ss_pred             ----CcccH---HHHHHHHHHHHHhhhhh
Q 008170          553 ----DKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       553 ----~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                          +|...   ..++.++..+|++..|+
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~  189 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAE  189 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                66544   46778888888887765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.22  E-value=3.4e-06  Score=84.40  Aligned_cols=73  Identities=15%  Similarity=0.130  Sum_probs=68.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P---~~~~  558 (575)
                      |+....+..+|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|   ++..
T Consensus        34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  109 (359)
T 3ieg_A           34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE  109 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHH
Confidence            455789999999999999999999999999999999999999999999999999999999999999999   7663

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.19  E-value=1.4e-05  Score=69.71  Aligned_cols=74  Identities=11%  Similarity=0.051  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170          488 ASELLKEKGNAAFKGK---QWNKAVNYYSEAIKLN-G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~-p-~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      ..+..++.|.++.+.+   ++++++..+++.++.+ | +..+++|++|..|+++++|++|+++++++|+++|+|..+..
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4778899999999988   7779999999999998 7 56899999999999999999999999999999999986443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.18  E-value=4.3e-06  Score=80.62  Aligned_cols=70  Identities=14%  Similarity=0.260  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ....+...|..+++.|+|++|+..|+++++++|++..+++++|...+..+++++|+..++++++++|++.
T Consensus       107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  176 (272)
T 3u4t_A          107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY  176 (272)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch
Confidence            3445555666666666666666666666666666666666666222233366666666666666666554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.17  E-value=6.7e-06  Score=85.64  Aligned_cols=72  Identities=15%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |.....+..+|..+++.|++++|+..|.++++++|++..+++++|.+|.++|++++|+..|+++++++|++.
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            455889999999999999999999999999999999999999999999999999999999999999999876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.14  E-value=8.4e-06  Score=80.19  Aligned_cols=87  Identities=9%  Similarity=-0.086  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--H---HHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--R---ARVG  561 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--~---~~~~  561 (575)
                      +....+...+..+.+++++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++  .   ..++
T Consensus       183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~  262 (287)
T 3qou_A          183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ  262 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence            3445666677778888888889999999999999999999999999999999999999999999999987  3   4566


Q ss_pred             HHHHHHHHhhhh
Q 008170          562 YVDCSMLIYLLC  573 (575)
Q Consensus       562 ~~~~~l~~~~~~  573 (575)
                      .++..+|+...+
T Consensus       263 ~~~~~~g~~~~a  274 (287)
T 3qou_A          263 EILAALGTGDAL  274 (287)
T ss_dssp             HHHHHHCTTCHH
T ss_pred             HHHHHcCCCCcH
Confidence            666666655443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.12  E-value=6.7e-06  Score=87.71  Aligned_cols=89  Identities=15%  Similarity=0.074  Sum_probs=76.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGY  562 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~  562 (575)
                      |+....+...|..+++.|+|++|+..|+++++++|++..+++++|.++.++|++++|+..++++++++|++.   ..++.
T Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  386 (537)
T 3fp2_A          307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE  386 (537)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999999999876   45666


Q ss_pred             HHHHHHHhhhhh
Q 008170          563 VDCSMLIYLLCI  574 (575)
Q Consensus       563 ~~~~l~~~~~~i  574 (575)
                      ++...++|..|+
T Consensus       387 ~~~~~g~~~~A~  398 (537)
T 3fp2_A          387 ILTDRGDFDTAI  398 (537)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHhCCHHHHH
Confidence            666677776654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.10  E-value=5.9e-06  Score=79.56  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=76.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL----  552 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l----  552 (575)
                      .+.....+...|..++..|+|++|+..|.+++++.        |....++.++|.++..+|++++|+..+++++++    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999883        556889999999999999999999999999988    


Q ss_pred             ----CcccH---HHHHHHHHHHHHhhhhh
Q 008170          553 ----DKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       553 ----~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                          +|...   ..++.++..+++|..|+
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~  147 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVE  147 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence                35443   45666666667776654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.07  E-value=1.2e-05  Score=82.79  Aligned_cols=90  Identities=17%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Cc
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA----TYYSNRAAAYLELGCFQQAEEDCSKTISL------DK  554 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~----~~~~~ra~~~~~l~~~~~Ai~~~~~al~l------~P  554 (575)
                      ++..+..+..+|..+++.|+|++|+..|+++++++|++.    .+++++|.+|..+|++++|+..+++++++      +|
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            466777778888888888888888888888888888775    57788888888888888888888888776      33


Q ss_pred             ccH---HHHHHHHHHHHHhhhhh
Q 008170          555 KVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       555 ~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      ...   ..++.++..+|+|..|+
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~  146 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAA  146 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHH
Confidence            322   34555556666665553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.05  E-value=1.7e-05  Score=77.98  Aligned_cols=88  Identities=9%  Similarity=0.024  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAI---KLNGTSA----TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al---~~~p~~~----~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--  556 (575)
                      ...+..+.+.|..++.+|+|++|+..|++++   +..|++.    .+++|+|.+|.++|+|++|+..+++++++.++.  
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence            3467899999999999999999999999999   4456643    689999999999999999999999999886541  


Q ss_pred             ----H---HHHHHHHHHHHHhhhh
Q 008170          557 ----R---ARVGYVDCSMLIYLLC  573 (575)
Q Consensus       557 ----~---~~~~~~~~~l~~~~~~  573 (575)
                          .   ..+|.++..+|++..|
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHH
Confidence                1   4567777777777665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.02  E-value=1.7e-05  Score=85.95  Aligned_cols=82  Identities=12%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Q 008170          485 SIDASELLKEKGNAAFKGKQ----------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG--CFQQAEEDCSKTISL  552 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~--~~~~Ai~~~~~al~l  552 (575)
                      +|+....|..++..+.+.++          |+++++.|+++++.+|++..+|++|+.++.+++  +|+++++++++++++
T Consensus        59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~  138 (567)
T 1dce_A           59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  138 (567)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence            46777888888888887777          888888888888888888888888888888888  668888888888888


Q ss_pred             CcccHHHHHHHHHH
Q 008170          553 DKKVRARVGYVDCS  566 (575)
Q Consensus       553 ~P~~~~~~~~~~~~  566 (575)
                      ||+|..++.+.+..
T Consensus       139 d~~N~~aW~~R~~~  152 (567)
T 1dce_A          139 DERNFHCWDYRRFV  152 (567)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             ccccccHHHHHHHH
Confidence            88887554444433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.01  E-value=1.4e-05  Score=78.18  Aligned_cols=93  Identities=12%  Similarity=0.015  Sum_probs=77.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL--------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      ...+|.....+...|..++..|+|++|+..|++++++        +|....+++++|.++..+|++++|+..+++++++.
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999996        56678899999999999999999999999999873


Q ss_pred             --------cccH---HHHHHHHHHHHHhhhhh
Q 008170          554 --------KKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       554 --------P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                              |...   ..++.++..+++|..|+
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  131 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE  131 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHH
Confidence                    3333   45566666666666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.00  E-value=2.7e-05  Score=77.17  Aligned_cols=83  Identities=10%  Similarity=-0.104  Sum_probs=68.2

Q ss_pred             ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCcc
Q 008170          485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAY----LEL---GCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~----~~l---~~~~~Ai~~~~~al~l~P~  555 (575)
                      +|+....|..++..+...+  ++++++..++++|+.+|++..+|+.|+.++    .++   +++++++..++++++++|+
T Consensus        63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk  142 (306)
T 3dra_A           63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK  142 (306)
T ss_dssp             CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred             CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence            4677888888998888888  899999999999999999999999999888    777   7888999999999999998


Q ss_pred             cHHHHHHHHHHH
Q 008170          556 VRARVGYVDCSM  567 (575)
Q Consensus       556 ~~~~~~~~~~~l  567 (575)
                      |+..+.+.+..+
T Consensus       143 ny~aW~~R~~vl  154 (306)
T 3dra_A          143 NHHVWSYRKWLV  154 (306)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            885544444433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.00  E-value=8.4e-06  Score=80.96  Aligned_cols=65  Identities=20%  Similarity=0.197  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P  554 (575)
                      +..+.+.|..+.+ |+|++|+.+|++++++.+..      ..++.++|.+|.++|+|++|+..|++++++.|
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4455555655555 66666666666666554432      34555666666666666666666666665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.99  E-value=2e-05  Score=68.54  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--H
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--R  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--~  557 (575)
                      ...+..+.+.|..++..|+|++|+..|.+++++.+..      ..+++++|.++..++++++|+..+++++++.++.  .
T Consensus        46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  125 (164)
T 3ro3_A           46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR  125 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence            4456789999999999999999999999999886543      6789999999999999999999999999874322  1


Q ss_pred             -------HHHHHHHHHHHHhhhhh
Q 008170          558 -------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -------~~~~~~~~~l~~~~~~i  574 (575)
                             ..++.++..++++..|+
T Consensus       126 ~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A          126 IGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhHHHHHHHHHHHHHHccCHHHHH
Confidence                   45666666777776654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.97  E-value=1e-05  Score=70.46  Aligned_cols=89  Identities=24%  Similarity=0.269  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--H
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--R  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--~  557 (575)
                      ...+..+...|..++..|+|++|+..|.+++++.++.      ..++.++|.++..+|++++|+..+++++++.++.  .
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            4667889999999999999999999999999986532      3589999999999999999999999999886542  1


Q ss_pred             -------HHHHHHHHHHHHhhhhh
Q 008170          558 -------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -------~~~~~~~~~l~~~~~~i  574 (575)
                             ..++.++..+++|..|+
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~  109 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAI  109 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHH
Confidence                   35566666666666554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.97  E-value=3e-05  Score=83.89  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYV  563 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~  563 (575)
                      ...|...|..+.+.|++++|++.|+++++++|++..+|..++.+|.+.|++++|++.++++++++|++...+..+
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  590 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL  590 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999999999999999998644433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.95  E-value=2.7e-05  Score=84.33  Aligned_cols=87  Identities=14%  Similarity=0.090  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      .....+...|..+.+.|++++|++.|+++++++|++...|++++.+|.+.|++++|++.|+++++++|++.   ..++.+
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  450 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ  450 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            34556666677777777777777777777777777777777777777777777777777777776666544   334444


Q ss_pred             HHHHHHhhhh
Q 008170          564 DCSMLIYLLC  573 (575)
Q Consensus       564 ~~~l~~~~~~  573 (575)
                      +...|++..|
T Consensus       451 ~~~~g~~~~A  460 (597)
T 2xpi_A          451 HMQLGNILLA  460 (597)
T ss_dssp             HHHHTCHHHH
T ss_pred             HHHcCCHHHH
Confidence            4445555444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.95  E-value=2.2e-05  Score=77.82  Aligned_cols=50  Identities=16%  Similarity=0.179  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          506 NKAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       506 ~~Ai~~~~~al~-~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      ++|+..|++|++ ++|++..+|.+++.++.++|++++|+..|+++++++|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  131 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI  131 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Confidence            455555555555 35555555555555555555555555555555555444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.95  E-value=3.9e-05  Score=81.27  Aligned_cols=92  Identities=8%  Similarity=0.034  Sum_probs=76.5

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008170          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-  552 (575)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-  552 (575)
                      .+.+|..+..+.+.|..|..+|+|++|+..|.++|++     .|++   +..++|+|.+|..+|+|++|+..|++|+++ 
T Consensus       344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~  423 (490)
T 3n71_A          344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL  423 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999976     3444   677999999999999999999999999965 


Q ss_pred             ----CcccH------HHHHHHHHHHHHhhhh
Q 008170          553 ----DKKVR------ARVGYVDCSMLIYLLC  573 (575)
Q Consensus       553 ----~P~~~------~~~~~~~~~l~~~~~~  573 (575)
                          -|+++      ..+..++..++.|..+
T Consensus       424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a  454 (490)
T 3n71_A          424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQN  454 (490)
T ss_dssp             HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence                46666      3455666666666554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.95  E-value=2.4e-05  Score=71.60  Aligned_cols=88  Identities=10%  Similarity=-0.097  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL---DKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l---~P~~~  557 (575)
                      ..+..+...|..++..|+|++|+..|.+++++      .+....+++++|.++..+|++++|+..+++++++   .+++.
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  103 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP  103 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence            56889999999999999999999999999994      4455788999999999999999999999999988   33222


Q ss_pred             -------HHHHHHHHHHHHhhhhh
Q 008170          558 -------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -------~~~~~~~~~l~~~~~~i  574 (575)
                             ..++.++..+|+|..|+
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~  127 (203)
T 3gw4_A          104 LAASANAYEVATVALHFGDLAGAR  127 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHH
Confidence                   45677777777776664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.94  E-value=2e-05  Score=77.16  Aligned_cols=90  Identities=12%  Similarity=0.079  Sum_probs=78.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISL----  552 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l----  552 (575)
                      .+.....+...|..++..|+|++|+..|.+++++.        |....++.++|.++..+|++++|+..+++++++    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999884        556788999999999999999999999999998    


Q ss_pred             ----CcccH---HHHHHHHHHHHHhhhhh
Q 008170          553 ----DKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       553 ----~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                          +|...   ..++.++..+|+|..|+
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~  215 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAE  215 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                55544   46777778888887765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.93  E-value=1.5e-05  Score=83.59  Aligned_cols=67  Identities=15%  Similarity=0.090  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P  554 (575)
                      .+..|..+|.+++.+|+|++|+++|++|+++         +|.....|.|+|.+|..+|++++|+.++++++++.+
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~  125 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE  125 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence            3667888999999999999999999999987         677889999999999999999999999999998854

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.93  E-value=1.5e-05  Score=78.44  Aligned_cols=89  Identities=10%  Similarity=0.009  Sum_probs=71.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--  556 (575)
                      ...+..+.+.|..++..|+|++|+.+|.++++..       +....+++|+|.+|.++|+|++|+..+++++++.++.  
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~  231 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence            3567789999999999999999999999999532       2235689999999999999999999999999987643  


Q ss_pred             -------HHHHHHHHHHHH-Hhhhhh
Q 008170          557 -------RARVGYVDCSML-IYLLCI  574 (575)
Q Consensus       557 -------~~~~~~~~~~l~-~~~~~i  574 (575)
                             ...+|.++..+| +|..|+
T Consensus       232 ~~~~~~~~~~lg~~~~~~g~~~~~A~  257 (293)
T 3u3w_A          232 MALIGQLYYQRGECLRKLEYEEAEIE  257 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence                   145666666666 345543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.93  E-value=3.2e-05  Score=74.84  Aligned_cols=84  Identities=18%  Similarity=0.143  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccH-
Q 008170          487 DASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKVR-  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~~~-  557 (575)
                      .....+.+.|..+.+    .+++++|+..|+++++++  ++.+++++|.+|..    .+++++|+..++++++++  +. 
T Consensus        36 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~  111 (273)
T 1ouv_A           36 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAE  111 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Ccc
Confidence            345667777888887    888888888888887774  67778888888888    788888888888887764  33 


Q ss_pred             --HHHHHHHHH----HHHhhhhh
Q 008170          558 --ARVGYVDCS----MLIYLLCI  574 (575)
Q Consensus       558 --~~~~~~~~~----l~~~~~~i  574 (575)
                        ..++.++..    .+++..|+
T Consensus       112 a~~~lg~~~~~~~~~~~~~~~A~  134 (273)
T 1ouv_A          112 GCASLGGIYHDGKVVTRDFKKAV  134 (273)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             HHHHHHHHHHcCCCcccCHHHHH
Confidence              345555554    55555443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.88  E-value=4.7e-05  Score=74.95  Aligned_cols=64  Identities=20%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      ...+...|..+++.|+|++|+..|+++++++|++    ..++.++|.++..+|++++|+..+++++++
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555    244555555555555555555555555544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.87  E-value=1.8e-05  Score=80.94  Aligned_cols=89  Identities=19%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-  557 (575)
                      +..+..+.+.|..++..|++++|+..|.+|+++.+.       .+.+++++|.+|..+|++++|+..+++++++.++.. 
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  219 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ  219 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence            456778888888888888888888888888877432       355788888888888888888888888887754321 


Q ss_pred             --------HHHHHHHHHHHHhhhhh
Q 008170          558 --------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 --------~~~~~~~~~l~~~~~~i  574 (575)
                              ..+|.++..+++|..|+
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~  244 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAI  244 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHH
Confidence                    45666666666666654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.87  E-value=1.8e-05  Score=64.17  Aligned_cols=57  Identities=11%  Similarity=-0.119  Sum_probs=48.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          518 LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       518 ~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      .+|+++.+++++|.+|+++|++++|+..|+++++++|++.   ..+|.++..+++|..|+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~   61 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI   61 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            4799999999999999999999999999999999999877   46777777778877765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.86  E-value=3.4e-05  Score=78.87  Aligned_cols=89  Identities=9%  Similarity=0.009  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----D-  553 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-----~-  553 (575)
                      +..+..+.+.|..+...|+|++|+..|.+++++.++.      ..+++++|.+|..+|++++|+..+++++++     + 
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence            5667788888888888888888888888888775432      357888888888888888888888888883     4 


Q ss_pred             cccH---HHHHHHHHHHHHhhhhh
Q 008170          554 KKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       554 P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      |...   ..+|.++..+|++..|+
T Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~  284 (383)
T 3ulq_A          261 PSLPQAYFLITQIHYKLGKIDKAH  284 (383)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHH
Confidence            4443   45666666666666554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.86  E-value=2.9e-05  Score=70.98  Aligned_cols=90  Identities=14%  Similarity=0.158  Sum_probs=72.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---NGT----SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--  555 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~----~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~--  555 (575)
                      .+..+..+.+.|..+...|+|++|+..|.+++++   .++    ...+++++|.++..+|++++|+..+++++++.+.  
T Consensus        62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence            3677889999999999999999999999999998   443    3567999999999999999999999999976432  


Q ss_pred             cH-------HHHHHHHHHHHHhhhhh
Q 008170          556 VR-------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       556 ~~-------~~~~~~~~~l~~~~~~i  574 (575)
                      +.       ..++.++...|++..|+
T Consensus       142 ~~~~~~~~~~~la~~~~~~g~~~~A~  167 (203)
T 3gw4_A          142 DQVAIACAFRGLGDLAQQEKNLLEAQ  167 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            22       35566666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.85  E-value=4.7e-05  Score=82.40  Aligned_cols=80  Identities=5%  Similarity=0.003  Sum_probs=73.1

Q ss_pred             ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      +|+...+|..++..+.+.+  +|+++++.++++++++|++..+|++|+.+..+++ .+++++++++++|+++|+|..++.
T Consensus       103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~  182 (567)
T 1dce_A          103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (567)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence            4788999999999999999  7799999999999999999999999999999999 999999999999999999985444


Q ss_pred             HHH
Q 008170          562 YVD  564 (575)
Q Consensus       562 ~~~  564 (575)
                      +.+
T Consensus       183 ~r~  185 (567)
T 1dce_A          183 YRS  185 (567)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.85  E-value=3.3e-05  Score=76.56  Aligned_cols=71  Identities=8%  Similarity=0.011  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSAT-YYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +....|.+.|..+.+.|++++|...|+++++++|+++. +|.+++.++.++|++++|+..|+++++++|.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~  168 (308)
T 2ond_A           97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Confidence            34556666666666666666666666666666666654 666666666666666666666666666665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.85  E-value=6.6e-05  Score=75.36  Aligned_cols=87  Identities=8%  Similarity=-0.099  Sum_probs=75.9

Q ss_pred             ChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCcccHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL-G-CFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l-~-~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      +|+....|..++..+...+ ++++++..++++|+.+|++..+|+.|+.++.++ + +++++++.++++++++|+|..++.
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence            4778899999999999999 599999999999999999999999999999998 8 999999999999999999995444


Q ss_pred             ---HHHHHHHHhh
Q 008170          562 ---YVDCSMLIYL  571 (575)
Q Consensus       562 ---~~~~~l~~~~  571 (575)
                         .+...++.+.
T Consensus       164 ~R~wvl~~l~~~~  176 (349)
T 3q7a_A          164 YLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcccc
Confidence               4444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.83  E-value=4.4e-05  Score=77.83  Aligned_cols=65  Identities=20%  Similarity=0.316  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----ATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      .+..+..+|..+++.|+|++|+..|+++++++|++    ..+++++|.++..+|++++|+..+++++++
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            35556666666666666666666666666666665    345666666666666666666666666655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.82  E-value=1.8e-05  Score=83.62  Aligned_cols=87  Identities=13%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ....+...|..+++.|++++|+..|+++++++|++..++.+++.++.++|++++|+..++++++++|++.   ..++.++
T Consensus       303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  382 (514)
T 2gw1_A          303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL  382 (514)
T ss_dssp             CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence            3456677777777777777777777777777777777777777777777777777777777777776655   3445555


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ...++|..|+
T Consensus       383 ~~~~~~~~A~  392 (514)
T 2gw1_A          383 TDKNDFDKAL  392 (514)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHCCCHHHHH
Confidence            5555555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.78  E-value=0.00011  Score=72.05  Aligned_cols=88  Identities=8%  Similarity=-0.059  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTI---SLDKKVR  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al---~l~P~~~  557 (575)
                      .....+...|..+...|+|++|+..|.+++++.+..      ..+++++|.+|..+|+|++|+..+++++   +..|++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            345556778999999999999999999999876544      6799999999999999999999999999   4455432


Q ss_pred             -------HHHHHHHHHHHHhhhhh
Q 008170          558 -------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 -------~~~~~~~~~l~~~~~~i  574 (575)
                             ..+|.++..+++|..|+
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHH
Confidence                   46777777778887775

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.77  E-value=0.00019  Score=71.60  Aligned_cols=81  Identities=6%  Similarity=0.048  Sum_probs=72.8

Q ss_pred             ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      +|+....|..++..+.+.+  +|++++.+++++++++|.+..+|++|+.+...+++ +++++++++++|+.+|.|..++.
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~  183 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  183 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            4778999999999999988  49999999999999999999999999999999999 69999999999999999985444


Q ss_pred             HHHH
Q 008170          562 YVDC  565 (575)
Q Consensus       562 ~~~~  565 (575)
                      +.+.
T Consensus       184 ~R~~  187 (331)
T 3dss_A          184 YRSC  187 (331)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.76  E-value=2.7e-05  Score=77.27  Aligned_cols=88  Identities=9%  Similarity=-0.005  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV---  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~---  556 (575)
                      ...+..+.+.|+.+.+.|+|++|+.+|++++++.+.      .+.++.++|.+|.. +++++|+..|++++++.++.   
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~  151 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL  151 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence            456788999999999999999999999999998543      25789999999999 99999999999999997753   


Q ss_pred             ------HHHHHHHHHHHHHhhhhh
Q 008170          557 ------RARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       557 ------~~~~~~~~~~l~~~~~~i  574 (575)
                            ...++.++..+|+|..|+
T Consensus       152 ~~~~~~~~~lg~~~~~~g~~~~A~  175 (307)
T 2ifu_A          152 RQAAELIGKASRLLVRQQKFDEAA  175 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHH
Confidence                  145677777778887765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.75  E-value=5.4e-06  Score=67.88  Aligned_cols=64  Identities=13%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKT  549 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~a  549 (575)
                      |.....+.++|.++++.|+|++|+..|+++++++|++      ..++++++.++..+|++++|+..+++.
T Consensus        35 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           35 PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            4457889999999999999999999999999999999      999999999999999999888776643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.74  E-value=6.2e-05  Score=78.37  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=67.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008170          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-  552 (575)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-  552 (575)
                      .+.+|..+..+.+.|..|..+|+|++|+..|+++|++     .|++   +..++|+|.+|..+|+|++|+..|++|+++ 
T Consensus       333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999976     3444   667999999999999999999999999976 


Q ss_pred             ----CcccH
Q 008170          553 ----DKKVR  557 (575)
Q Consensus       553 ----~P~~~  557 (575)
                          -|+++
T Consensus       413 ~~~lG~~Hp  421 (433)
T 3qww_A          413 EVAHGKDHP  421 (433)
T ss_dssp             HHHTCTTCH
T ss_pred             HHHcCCCCh
Confidence                46666

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.74  E-value=3.7e-05  Score=78.96  Aligned_cols=83  Identities=23%  Similarity=0.257  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------c
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD------K  554 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~------P  554 (575)
                      ..+..+...|..++..|+|++|+..|++++++      .|....+++++|.+|..+|++++|+..+++++++.      +
T Consensus        84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  163 (411)
T 4a1s_A           84 TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL  163 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH
Confidence            34678999999999999999999999999998      57778999999999999999999999999999883      3


Q ss_pred             ccH---HHHHHHHHHHHH
Q 008170          555 KVR---ARVGYVDCSMLI  569 (575)
Q Consensus       555 ~~~---~~~~~~~~~l~~  569 (575)
                      ...   ..++.++..+++
T Consensus       164 ~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          164 SEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCc
Confidence            322   467777788888

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.72  E-value=0.00013  Score=72.83  Aligned_cols=83  Identities=12%  Similarity=0.131  Sum_probs=72.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Q 008170          485 SIDASELLKEKGNAAFKGKQ----------WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISL  552 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~--~~~Ai~~~~~al~l  552 (575)
                      +|+....|..++..+...++          +++++.+++++++.+|++..+|++|+.++.++++  +++++..+++++++
T Consensus        60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~  139 (331)
T 3dss_A           60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  139 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence            57788999999998877665          7999999999999999999999999999999995  99999999999999


Q ss_pred             CcccHHHHHHHHHHH
Q 008170          553 DKKVRARVGYVDCSM  567 (575)
Q Consensus       553 ~P~~~~~~~~~~~~l  567 (575)
                      +|+|..++.+.+..+
T Consensus       140 dprNy~AW~~R~~vl  154 (331)
T 3dss_A          140 DERNFHCWDYRRFVA  154 (331)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999996555554444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.70  E-value=8.5e-05  Score=75.76  Aligned_cols=89  Identities=19%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTIS-----LDK  554 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~-----l~P  554 (575)
                      +..+..+.+.|..+...|+|++|++.|.+++++.+.      ...+++++|.+|..+|++++|+..++++++     .+|
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  258 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD  258 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence            356778888888888888888888888888876431      256788888888888888888888888888     556


Q ss_pred             ccH---HHHHHHHHHHHHhhhhh
Q 008170          555 KVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       555 ~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      ...   ..+|.++..+|++..|+
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~  281 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAF  281 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHH
Confidence            544   35566666666666554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.70  E-value=7.1e-05  Score=78.45  Aligned_cols=49  Identities=12%  Similarity=0.157  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYL  534 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~  534 (575)
                      |.....+.+.|..+.+.|++++|+..|.++++.+|+++.+++++|.+|.
T Consensus       244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            4556778889999999999999999999999999988887777766653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.69  E-value=1.8e-05  Score=63.57  Aligned_cols=64  Identities=23%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             hhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASE-LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~-~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |+... .+..+|..+++.|+|++|+..|+++++++|++..++++        +.+.+++..|+++++++|++.
T Consensus        31 p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           31 PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            44567 89999999999999999999999999999999988865        577899999999999988753

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.68  E-value=0.00014  Score=72.08  Aligned_cols=83  Identities=8%  Similarity=-0.009  Sum_probs=74.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCccc
Q 008170          485 SIDASELLKEKGNAAFKGKQWN--KAVNYYSEAIKLNGTSATYYSNRAAAYLELGC------FQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~--~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~------~~~Ai~~~~~al~l~P~~  556 (575)
                      +|+....|..++.++.+.++++  ++++.++++|+.+|.+..+|++|+.++.++++      ++++++.++++|+++|+|
T Consensus       140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n  219 (306)
T 3dra_A          140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN  219 (306)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence            3677999999999999999999  99999999999999999999999999999988      999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008170          557 RARVGYVDCSM  567 (575)
Q Consensus       557 ~~~~~~~~~~l  567 (575)
                      ..++.+....+
T Consensus       220 ~SaW~y~~~ll  230 (306)
T 3dra_A          220 PSTWNYLLGIH  230 (306)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            96554444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.64  E-value=0.0001  Score=72.29  Aligned_cols=69  Identities=12%  Similarity=0.133  Sum_probs=62.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGC-FQQAEEDCSKTISLD  553 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~  553 (575)
                      .+..+..+.+.|..++++|+|++|+..|++++++.++.      +.+|+++|.+|.++|+ +++|+..|++++++.
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999987544      8899999999999995 799999999999763

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.64  E-value=0.00017  Score=69.56  Aligned_cols=85  Identities=22%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccH-H
Q 008170          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKVR-A  558 (575)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~~~-~  558 (575)
                      ....+.+.|..+++    .+++++|+..|+++++.  +++.+++++|.+|.+    .+++++|+..+++++++++... .
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~  150 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCT  150 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHH
Confidence            46678889999999    99999999999999988  489999999999999    9999999999999999874332 4


Q ss_pred             HHHHHHHH----HHHhhhhh
Q 008170          559 RVGYVDCS----MLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~----l~~~~~~i  574 (575)
                      .++.++..    .+++..|+
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~  170 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKAL  170 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHH
Confidence            55555555    55565554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.62  E-value=9.2e-05  Score=75.53  Aligned_cols=90  Identities=11%  Similarity=0.054  Sum_probs=76.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK--  555 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~--  555 (575)
                      .+..+..+.+.|..++..|++++|+..|.+++++.+.       .+.+++++|.+|..+|++++|++.+++++++.++  
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            3678999999999999999999999999999987543       2568999999999999999999999999987432  


Q ss_pred             cH-------HHHHHHHHHHHHhhhhh
Q 008170          556 VR-------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       556 ~~-------~~~~~~~~~l~~~~~~i  574 (575)
                      +.       ..+|.++..+++|..|+
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~  242 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAV  242 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            11       46777888888887775

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.60  E-value=0.00015  Score=73.88  Aligned_cols=83  Identities=22%  Similarity=0.275  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV----  556 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~----  556 (575)
                      ..+..+...|..++..|+|++|+..|++++++      .|....++.++|.++..+|++++|+..+++++++.|+.    
T Consensus        45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  124 (406)
T 3sf4_A           45 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV  124 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc
Confidence            34788999999999999999999999999988      34557899999999999999999999999999987753    


Q ss_pred             -----HHHHHHHHHHHHH
Q 008170          557 -----RARVGYVDCSMLI  569 (575)
Q Consensus       557 -----~~~~~~~~~~l~~  569 (575)
                           ...++.++...++
T Consensus       125 ~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A          125 GEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCC
Confidence                 1467777777888

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.59  E-value=5.7e-05  Score=74.28  Aligned_cols=83  Identities=22%  Similarity=0.285  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---  557 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---  557 (575)
                      .....+...|..++..|+|++|+..|++++++      .+....++.++|.++..+|++++|+..+++++++.++..   
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  120 (338)
T 3ro2_A           41 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV  120 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch
Confidence            44788999999999999999999999999988      445578999999999999999999999999998866431   


Q ss_pred             ------HHHHHHHHHHHH
Q 008170          558 ------ARVGYVDCSMLI  569 (575)
Q Consensus       558 ------~~~~~~~~~l~~  569 (575)
                            ..++.++..+++
T Consensus       121 ~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A          121 GEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCc
Confidence                  456777777777

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.58  E-value=0.00025  Score=68.87  Aligned_cols=66  Identities=15%  Similarity=-0.091  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--GT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      ..++.+|..+.+.|++++|+..|++++.-.  |. ...+++++|.|+.++|+.++|...|++++..+|+
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            455566666666666666666666666433  33 3446666666666666666666666666666665

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.58  E-value=0.00031  Score=73.14  Aligned_cols=76  Identities=14%  Similarity=0.143  Sum_probs=67.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008170          482 TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-  552 (575)
Q Consensus       482 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-  552 (575)
                      .+.++..+..+.+.|..|..+|+|++|+..|.++|++     .|++   +..++|+|.+|..+|++++|+..+++|+++ 
T Consensus       322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            4677899999999999999999999999999999976     2444   567999999999999999999999999966 


Q ss_pred             ----CcccH
Q 008170          553 ----DKKVR  557 (575)
Q Consensus       553 ----~P~~~  557 (575)
                          -|+++
T Consensus       402 ~~~lG~~Hp  410 (429)
T 3qwp_A          402 RVTHGREHS  410 (429)
T ss_dssp             HHHTCTTSH
T ss_pred             HHhcCCCCh
Confidence                56666

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.56  E-value=0.00031  Score=68.21  Aligned_cols=118  Identities=11%  Similarity=-0.014  Sum_probs=85.3

Q ss_pred             chhHHhHHHHHHHH-hhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Q 008170          452 DKFLLDTVLDLYDS-LQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS--ATYYSN  528 (575)
Q Consensus       452 d~~ll~~a~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~~  528 (575)
                      +..-+..+..+... -.+++.........    ..|.+. .++.+|..+++.++|++|+..|+++++..+..  ..++++
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPV----AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCC----TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence            34444555444443 22334333333322    346777 88999999999999999999999998764332  468999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--cc-cH---HHHHHHHHHHHHhhhhh
Q 008170          529 RAAAYLELGCFQQAEEDCSKTISLD--KK-VR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       529 ra~~~~~l~~~~~Ai~~~~~al~l~--P~-~~---~~~~~~~~~l~~~~~~i  574 (575)
                      +|.++..+|++++|++.|++++.-.  |. ..   ..++.++..+|+...|.
T Consensus       177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~  228 (282)
T 4f3v_A          177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV  228 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999998654  54 22   56788888888877664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.55  E-value=0.0002  Score=75.84  Aligned_cols=86  Identities=14%  Similarity=0.085  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Ccc
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLN-----GTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKK  555 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-----p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-----~P~  555 (575)
                      +....+++..+..+|+|++|+..|.+++++.     |++   +..++|+|.+|..+|+|++|+..++++|++     -|+
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            4445667777889999999999999999862     444   678999999999999999999999999966     455


Q ss_pred             cH------HHHHHHHHHHHHhhhhh
Q 008170          556 VR------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       556 ~~------~~~~~~~~~l~~~~~~i  574 (575)
                      ++      .++|.++..+|+|..|+
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~  413 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGH  413 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            55      57888888888887764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.49  E-value=0.00076  Score=67.66  Aligned_cols=80  Identities=10%  Similarity=-0.013  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKKVRARVGYVDCSM  567 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l  567 (575)
                      ...+........+.+..++|++.++++|+++|++..+|+.|+.++..++ .+++++..++++|+.+|+++..+......+
T Consensus        54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL  133 (349)
T 3q7a_A           54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3333333344444555679999999999999999999999999999999 599999999999999999996554444444


Q ss_pred             H
Q 008170          568 L  568 (575)
Q Consensus       568 ~  568 (575)
                      .
T Consensus       134 ~  134 (349)
T 3q7a_A          134 D  134 (349)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.46  E-value=0.0003  Score=54.80  Aligned_cols=52  Identities=27%  Similarity=0.416  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG  537 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~  537 (575)
                      |.....+.+.|..+++.|++++|+..|+++++++|++..++.+++.++.++|
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence            3457789999999999999999999999999999999999999999998764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.42  E-value=0.0005  Score=73.58  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFK-------GKQWN-------KAVNYYSEAIK-LNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~-------~g~~~-------~Ai~~~~~al~-~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~  551 (575)
                      .....|.+.|..+.+       .|+++       +|+..|++|++ ++|++..+|++++..+.++|++++|...|+++++
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~  349 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA  349 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence            345566666666654       56655       66666666665 5666666666666666666666666666666666


Q ss_pred             hCccc
Q 008170          552 LDKKV  556 (575)
Q Consensus       552 l~P~~  556 (575)
                      ++|++
T Consensus       350 ~~p~~  354 (530)
T 2ooe_A          350 IEDID  354 (530)
T ss_dssp             SSSSC
T ss_pred             ccccC
Confidence            66654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.37  E-value=0.00039  Score=72.29  Aligned_cols=82  Identities=10%  Similarity=-0.078  Sum_probs=66.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH--
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----DKKVR--  557 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-----~P~~~--  557 (575)
                      .+......+.|+|++|+..|.+++++     .|++   +..+.|+|.+|..+|+|++|+..++++|++     -|+++  
T Consensus       302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  381 (433)
T 3qww_A          302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV  381 (433)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            34455555678999999999999986     3555   567999999999999999999999999966     35555  


Q ss_pred             ----HHHHHHHHHHHHhhhhh
Q 008170          558 ----ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 ----~~~~~~~~~l~~~~~~i  574 (575)
                          .++|.++..+|+|..|+
T Consensus       382 a~~l~nLa~~~~~qg~~~eA~  402 (433)
T 3qww_A          382 ASMWLKLGRLYMGLENKAAGE  402 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHH
Confidence                57888888888888765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.34  E-value=0.00072  Score=68.39  Aligned_cols=87  Identities=14%  Similarity=-0.054  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN--------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV--  556 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~--  556 (575)
                      .....+.+.|..++.+|+|++|+..|++++++.        |....++.++|.++..+|++++|+..+++++++.++.  
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  170 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  170 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence            345567778888888888888888888888764        2345667778888888888888888888888776642  


Q ss_pred             ------HHHHHHHHHHHHHhhhh
Q 008170          557 ------RARVGYVDCSMLIYLLC  573 (575)
Q Consensus       557 ------~~~~~~~~~~l~~~~~~  573 (575)
                            ...++.++...|++..|
T Consensus       171 ~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          171 QQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHH
Confidence                  13455556666666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.29  E-value=0.00055  Score=63.69  Aligned_cols=65  Identities=11%  Similarity=-0.046  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008170          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLE----LGCFQQAEEDCSKTISL  552 (575)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p--~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l  552 (575)
                      ++..+.+.|..++.    .+++++|+..|+++++..+  +++.+++++|.+|..    .+++++|+..|++++++
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            35567777777776    7777888888887777766  347777777877777    77778888888887777

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.19  E-value=0.001  Score=66.76  Aligned_cols=71  Identities=15%  Similarity=0.098  Sum_probs=64.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +..+..+...+..++.+|++++|+..+++|++++| +...|..+|.++...|++++|++.|++|+.++|...
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            45677888889889889999999999999999996 478889999999999999999999999999999764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.17  E-value=0.00091  Score=69.56  Aligned_cols=88  Identities=11%  Similarity=0.100  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL-----NGTS---ATYYSNRAAAYLELGCFQQAEEDCSKTISL-----D  553 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l-----~  553 (575)
                      ...+...+....+.++|+|++|+..|++++++     .|++   +..+.|++.+|..+|+|++|+..++++|++     -
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg  364 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP  364 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence            34556667777888999999999999999976     3444   678999999999999999999999999966     3


Q ss_pred             cccH------HHHHHHHHHHHHhhhhh
Q 008170          554 KKVR------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       554 P~~~------~~~~~~~~~l~~~~~~i  574 (575)
                      |+++      ..+|.++...|+|..|+
T Consensus       365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~  391 (429)
T 3qwp_A          365 GSHPVRGVQVMKVGKLQLHQGMFPQAM  391 (429)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5555      57788888888887764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.14  E-value=0.00056  Score=63.63  Aligned_cols=63  Identities=10%  Similarity=-0.001  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Q 008170          489 SELLKEKGNAAFKGK----QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       489 a~~~~~~g~~~~~~g----~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P  554 (575)
                      +..+.+.|..+.+ +    ++++|+..|+++++  +.++.+++++|.+|..    .+++++|+..|+++++..+
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            4455556666555 4    66666666666643  3466666666666665    5666666666666666655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.12  E-value=0.0022  Score=53.79  Aligned_cols=73  Identities=8%  Similarity=0.014  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNK---AVNYYSEAIKLN-G-TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~---Ai~~~~~al~~~-p-~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      .+.-++.+..+.+..+..+   +|..+...++.+ | ..-.++|.+|..++++|+|++|...++.+|+.+|+|..+..
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5677889999999888776   999999988877 5 46789999999999999999999999999999999986433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.00  E-value=0.0035  Score=53.80  Aligned_cols=65  Identities=20%  Similarity=0.100  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Q 008170          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P  554 (575)
                      ++..+.+.|..|++    .+++++|+..|+++.+.  .++.+++++|.+|..    .+++++|+..|+++.+...
T Consensus        56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            46788999999999    99999999999999987  689999999999999    8999999999999998843

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.91  E-value=0.012  Score=50.18  Aligned_cols=72  Identities=8%  Similarity=0.016  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          489 SELLKEKGNAAFKGKQW---NKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~---~~Ai~~~~~al~~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      .+.-++.+..+.+..+-   .++|..++..++.+|. .-..+|.+|..++++++|++|.++++.+|+.+|+|..+.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            56778888899887765   4789999999998884 577999999999999999999999999999999998643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.90  E-value=0.0014  Score=65.77  Aligned_cols=87  Identities=13%  Similarity=-0.026  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------------------------------
Q 008170          488 ASELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSATYYSNRAAAY-------------------------------  533 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~ra~~~-------------------------------  533 (575)
                      .+-.++-+|..++..++   +.+|+.+|++|++++|+++.+|..++.||                               
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            45566668888877554   58999999999999999988877655544                               


Q ss_pred             -------------HHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhhhhh
Q 008170          534 -------------LELGCFQQAEEDCSKTISLDKKVR--ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       534 -------------~~l~~~~~Ai~~~~~al~l~P~~~--~~~~~~~~~l~~~~~~i  574 (575)
                                   ...|++++|+..+++++.++|++.  ..+|.++...|++..|+
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~  330 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA  330 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence                         336999999999999999998644  35566777777776664

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.85  E-value=0.0032  Score=63.48  Aligned_cols=69  Identities=10%  Similarity=0.051  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      ....+...|..++..|+|++|+..|.+++++.+..      ..+++++|.++..+|++++|+..+++++++.+..
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  126 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ  126 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            34455666666666667777766666666654432      2335666666666677777777777666665544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.85  E-value=0.012  Score=49.48  Aligned_cols=72  Identities=8%  Similarity=0.016  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          489 SELLKEKGNAAFKGKQW---NKAVNYYSEAIKLNGT-SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~---~~Ai~~~~~al~~~p~-~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      .+.-++.+..+.+..+-   .++|..++..++.+|. .-..++.+|..++++|+|++|.++++.+|+.+|+|..+.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            56778888888887765   4789999999998884 478999999999999999999999999999999998643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.80  E-value=0.0046  Score=65.98  Aligned_cols=70  Identities=9%  Similarity=0.024  Sum_probs=65.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      +|.+...|...+. +.++|++++|...|+++++..|++..+|...+..+.+.+++++|+..|+++++..|+
T Consensus         9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~   78 (530)
T 2ooe_A            9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH   78 (530)
T ss_dssp             CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred             CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence            3667888998888 488999999999999999999999999999999999999999999999999999995

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.76  E-value=0.0024  Score=50.81  Aligned_cols=56  Identities=14%  Similarity=0.084  Sum_probs=48.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhhhhh
Q 008170          519 NGTSATYYSNRAAAYLELGC---FQQAEEDCSKTISLDKKVRA---RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       519 ~p~~~~~~~~ra~~~~~l~~---~~~Ai~~~~~al~l~P~~~~---~~~~~~~~l~~~~~~i  574 (575)
                      +|+++.++..+|.+++..++   .++|...++++|++||++..   .+|......|+|..||
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai   63 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI   63 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            68999999999999987766   79999999999999999994   5666777778888876

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.69  E-value=0.0097  Score=57.38  Aligned_cols=70  Identities=10%  Similarity=0.030  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccc
Q 008170          487 DASELLKEKGNAAFKG-----KQWNKAVNYYSEAIKLNGTS-ATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~-----g~~~~Ai~~~~~al~~~p~~-~~~~~~ra~~~~~-l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      .+...|.-.|..|.+.     |+.++|.++|++||+++|+. ...++..|..+.. ++++++|.+.++++++.+|..
T Consensus       197 ~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          197 QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            3667899999999995     99999999999999999975 9999999999988 499999999999999998873

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.55  E-value=0.0086  Score=52.47  Aligned_cols=64  Identities=19%  Similarity=0.163  Sum_probs=54.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----------------------CHHHHHHHHHHHHHcCCHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG---T----------------------SATYYSNRAAAYLELGCFQ  540 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----------------------~~~~~~~ra~~~~~l~~~~  540 (575)
                      ..+.+.+.-.|+.+|.+++|..|...|++||++..   +                      +.++.|..+.||.++++++
T Consensus        60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~  139 (167)
T 3ffl_A           60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence            46788899999999999999999999999986521   1                      1378999999999999999


Q ss_pred             HHHHHHHHH
Q 008170          541 QAEEDCSKT  549 (575)
Q Consensus       541 ~Ai~~~~~a  549 (575)
                      +|+..++..
T Consensus       140 ~Ai~~Le~I  148 (167)
T 3ffl_A          140 DAIAILDGI  148 (167)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHhcC
Confidence            999986653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.48  E-value=0.0067  Score=52.01  Aligned_cols=68  Identities=19%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKVR---ARVGYVDCS  566 (575)
Q Consensus       495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~  566 (575)
                      .|..+.+.+.+++|++.|+++.+.  .++.+++++|.+|..    .+++++|+..|+++.+.  .+.   ..++.++..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            899999999999999999999987  689999999999999    89999999999999987  344   344444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.39  E-value=0.0071  Score=70.20  Aligned_cols=65  Identities=11%  Similarity=0.134  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .+....|++.|.++.+.|+|++|++.|.+|     +++..|.+.+.++.++|+|++|++.+.++.+.+++
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            345778999999999999999999999776     88999999999999999999999999999988755

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.30  E-value=0.012  Score=61.92  Aligned_cols=64  Identities=13%  Similarity=-0.017  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008170          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~  553 (575)
                      ++..+..+|..++.    .+++++|+..|+++++.  .++.+++++|.+|..    .+++++|+..|+++.+.+
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~  145 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG  145 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            45677788888888    88999999999998875  578888899999888    788999999999988763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.25  E-value=0.014  Score=57.35  Aligned_cols=65  Identities=11%  Similarity=-0.078  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNG--TSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .+.-.|..+...|++++|++.+.+.|..+|  .+..++...+.+++++|+.+.|.+.+++..+.+|+
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d  168 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED  168 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            346799999999999999999999999987  88999999999999999999999999999999993

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.026  Score=57.80  Aligned_cols=85  Identities=9%  Similarity=0.079  Sum_probs=67.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---c
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK---V  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~---~  556 (575)
                      ...+..+.+.|..++..|+|++|+..+++++...      +....++.+.+.+|..+++|++|...+++++.+.+.   .
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  211 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP  211 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence            3457889999999999999999999999998762      334789999999999999999999999999987543   2


Q ss_pred             HHHHHHHHHHHHHh
Q 008170          557 RARVGYVDCSMLIY  570 (575)
Q Consensus       557 ~~~~~~~~~~l~~~  570 (575)
                      ....+.++..+|.+
T Consensus       212 ~~~~~~~~~~~g~~  225 (434)
T 4b4t_Q          212 TQTVAELDLMSGIL  225 (434)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            23344444444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.22  E-value=0.0085  Score=52.52  Aligned_cols=86  Identities=8%  Similarity=-0.029  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cc
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS---------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDK---KV  556 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P---~~  556 (575)
                      ...++++...++..+.|+.|+-.++.++.+..++         +.++..+|.+++..++|..|...|+++|++.-   ++
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            4468899999999999999999999988764322         45889999999999999999999999986531   11


Q ss_pred             -----------------------H--HHHHHHHHHHHHhhhhh
Q 008170          557 -----------------------R--ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       557 -----------------------~--~~~~~~~~~l~~~~~~i  574 (575)
                                             .  ...+.|+..++++..||
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence                                   1  45677777778887776

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.16  E-value=0.013  Score=61.74  Aligned_cols=66  Identities=15%  Similarity=0.027  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcc
Q 008170          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~  555 (575)
                      +...+.+.|..+++    .+++++|+..|+++++.  .++.+++++|.+|.+    .+++++|+..|+++++.+|+
T Consensus       362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            36788899999999    89999999999999986  468899999999998    89999999999999999843

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.05  E-value=0.0027  Score=65.38  Aligned_cols=79  Identities=11%  Similarity=-0.026  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLI  569 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~~  569 (575)
                      ..|..++.++.+.|+|++|++.|.++     .++..|...+.++...|+|+.|.....+ |.++|++...+..++...|+
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~  222 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGY  222 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCC
Confidence            45666777777777777777777777     3667777777777777777777665554 44667666555666666666


Q ss_pred             hhhhh
Q 008170          570 YLLCI  574 (575)
Q Consensus       570 ~~~~i  574 (575)
                      |..+|
T Consensus       223 ~eEai  227 (449)
T 1b89_A          223 FEELI  227 (449)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.01  E-value=0.021  Score=46.18  Aligned_cols=45  Identities=18%  Similarity=0.194  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA  530 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra  530 (575)
                      ......+...|.++++.|++++|+..++++++++|++..+..|+.
T Consensus        43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            456788999999999999999999999999999999999999887

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=95.95  E-value=0.015  Score=60.83  Aligned_cols=65  Identities=12%  Similarity=-0.043  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcccHH
Q 008170          491 LLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----GCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       491 ~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l----~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      .+.++|..+.+.|   ++++|+..|+++.+..+.++..++++|.+|...    +++++|+..|+++.   |+++.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~  249 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA  249 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH
Confidence            6677777777777   777777777777777777777777777777655    67777777777776   55553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.016  Score=59.52  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-----------------TYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-----------------~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      ...+++..+.++|+|++|++.|.++++.+|+..                 .++.++|.+|.++|+|++|++.+.+++++.
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            466789999999999999999999999887642                 468899999999999999999999999876


Q ss_pred             ccc
Q 008170          554 KKV  556 (575)
Q Consensus       554 P~~  556 (575)
                      +..
T Consensus        86 ~~~   88 (434)
T 4b4t_Q           86 MQF   88 (434)
T ss_dssp             HTS
T ss_pred             HHc
Confidence            653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=95.69  E-value=0.011  Score=60.82  Aligned_cols=125  Identities=17%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             ccccccccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCC------CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170          442 SISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPD------TNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA  515 (575)
Q Consensus       442 Glqivg~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~a  515 (575)
                      ..+-+|....+....+-|..+.............-..-.+      .-....+...|++...++...|+|+.|..+..+ 
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-  202 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH-  202 (449)
T ss_dssp             -------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence            5566777777777666666655533211110000000000      000113467889999999999999999888775 


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q 008170          516 IKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLIY  570 (575)
Q Consensus       516 l~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~~~  570 (575)
                      |...|   .-......+|.+.|++++|+..+++++.+++.+...+-.+.....+|
T Consensus       203 L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          203 IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            33444   44556888999999999999999999999988875444444444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.63  E-value=0.033  Score=64.82  Aligned_cols=69  Identities=12%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNG-------------------------TSATYYSNRAAAYLELGCFQQAE  543 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p-------------------------~~~~~~~~ra~~~~~l~~~~~Ai  543 (575)
                      +..|...+..+.+.|+|++|++.|.+|...++                         .++..+..++..|.++|.|++|+
T Consensus      1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A         1221 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence            34566667777777777777777776644332                         13344556666677777777777


Q ss_pred             HHHHHHHHhCcccH
Q 008170          544 EDCSKTISLDKKVR  557 (575)
Q Consensus       544 ~~~~~al~l~P~~~  557 (575)
                      ..|+++|.+++.+.
T Consensus      1301 ~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A         1301 TMLEAALGLERAHM 1314 (1630)
T ss_pred             HHHHHHhccChhHh
Confidence            77777777776654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.51  E-value=0.03  Score=53.95  Aligned_cols=52  Identities=13%  Similarity=0.083  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCccc
Q 008170          505 WNKAVNYYSEAIKLNGT--SATYYSNRAAAYLEL-----GCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       505 ~~~Ai~~~~~al~~~p~--~~~~~~~ra~~~~~l-----~~~~~Ai~~~~~al~l~P~~  556 (575)
                      ..+|...++++++++|+  +..+|..+|..|.+.     |+.++|.+.|+++|+++|+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            37888999999999999  677999999999996     99999999999999999975

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=95.18  E-value=0.047  Score=56.89  Aligned_cols=59  Identities=10%  Similarity=-0.004  Sum_probs=29.2

Q ss_pred             HHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 008170          489 SELLKEKGNA-A--FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG-----CFQQAEEDCSKTI  550 (575)
Q Consensus       489 a~~~~~~g~~-~--~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~-----~~~~Ai~~~~~al  550 (575)
                      +..+.+.|.. +  ...+++++|+..|+++++.  .++.+++++|.+|. .|     ++++|+..|+++.
T Consensus       248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            3344455554 2  2445555555555555533  24555555555554 22     5555555555555

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.74  E-value=0.061  Score=46.64  Aligned_cols=70  Identities=9%  Similarity=-0.043  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-cc-cH---HHHHHHHHHHHHhhhhh
Q 008170          505 WNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLD-KK-VR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       505 ~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~---~~~~Ai~~~~~al~l~-P~-~~---~~~~~~~~~l~~~~~~i  574 (575)
                      .+.+.+.|.+.++.++.+..+.++.|.++.+.+   ++++++..++++++.+ |+ +.   ..++..+..+++|..|+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            456778888899989999999999999999988   6779999999999998 73 33   44555556666776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.71  E-value=0.086  Score=58.05  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT  549 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a  549 (575)
                      ....+..++.-+.++|+|+-|+.+-++|+...|.+...|+.++.||.++++|+.|+-.++-+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            35567788999999999999999999999999999999999999999999999999877766

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=93.86  E-value=0.21  Score=48.86  Aligned_cols=88  Identities=8%  Similarity=-0.102  Sum_probs=61.1

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHhCcc--
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT----SATYYSNRAAA--YLELG--CFQQAEEDCSKTISLDKK--  555 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~ra~~--~~~l~--~~~~Ai~~~~~al~l~P~--  555 (575)
                      ....+.+...+..++++|+.+.|.+.+++..+.+|+    +-....+++.+  .+..|  ++++|+..|+++.+..|+  
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~  212 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK  212 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence            356777777888888899999999888888888883    22333444444  55556  888888888888887776  


Q ss_pred             cHHHHHHHHHHHHHhhhh
Q 008170          556 VRARVGYVDCSMLIYLLC  573 (575)
Q Consensus       556 ~~~~~~~~~~~l~~~~~~  573 (575)
                      ....+..++..+|+|..|
T Consensus       213 ~~~lLln~~~~~g~~~eA  230 (310)
T 3mv2_B          213 TQLGLLNLHLQQRNIAEA  230 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHH
T ss_pred             cHHHHHHHHHHcCCHHHH
Confidence            223333366666766554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.82  E-value=0.84  Score=39.16  Aligned_cols=105  Identities=11%  Similarity=-0.004  Sum_probs=78.0

Q ss_pred             cccCCchhHHhHHHHHHHHhhhhhhhccCCCCCCCCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008170          447 TYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYY  526 (575)
Q Consensus       447 g~~~~d~~ll~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~  526 (575)
                      |.+..|..|-++-..+++.+..       .+|.. .......+..|...+.- ...++.++|-+.|+.++++....+.+|
T Consensus        27 g~p~~d~~l~rlrd~YerAia~-------~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiw   97 (161)
T 4h7y_A           27 SVPLSDALLNKLIGRYSQAIEA-------LPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVH   97 (161)
T ss_dssp             TCSCCHHHHHHHHHHHHHHHHH-------SCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHc-------CCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHH
Confidence            4555664444444444443332       22222 33456777778777744 566999999999999999988889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          527 SNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       527 ~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      ...|..-.++|+...|.+.+.+++.+.|.....+
T Consensus        98 i~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           98 ISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            9999999999999999999999999999766433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.65  E-value=0.35  Score=45.83  Aligned_cols=62  Identities=24%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       496 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      ...+++.|+.++|++.....|+.+|.|+.....+.+.+.-.|+|+.|...++-+.+++|+..
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            35678999999999999999999999999999999999999999999999999999999877

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.73  E-value=0.97  Score=47.32  Aligned_cols=79  Identities=18%  Similarity=0.106  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 008170          491 LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSMLI  569 (575)
Q Consensus       491 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~~  569 (575)
                      .+...|....-...+..|..+|.+|+.++|++...|+.+|.+....++.-+|+-+|.+++....-+..+...+...+.+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5567888888888899999999999999999999999999999999999999999999998766677666666555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.57  E-value=1.4  Score=36.73  Aligned_cols=47  Identities=9%  Similarity=0.101  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY  533 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~  533 (575)
                      ..-+.++..+..+++.|+|++|.++.+..|+.+|++..+..-+..+-
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            56778899999999999999999999999999999988877665543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.26  E-value=1.4  Score=44.65  Aligned_cols=62  Identities=8%  Similarity=-0.037  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS  551 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~  551 (575)
                      ..+..+...+...|++++++..+.+++..+|-+-.+|..+-.++...|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34556778889999999999999999999999999999999999999999999999988743

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=88.67  E-value=0.77  Score=50.26  Aligned_cols=67  Identities=13%  Similarity=-0.024  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAV-NYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISL  552 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai-~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l  552 (575)
                      |.....|...+.-+.+.|+.++|. ..|.+|+..+|++..+|...+....+.+++++|.+.|+++++.
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456788999999999999999997 9999999999999999999999999999999999999999975

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=86.17  E-value=4.6  Score=44.12  Aligned_cols=69  Identities=12%  Similarity=0.013  Sum_probs=62.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC---FQQAEEDCSKTISLD  553 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~---~~~Ai~~~~~al~l~  553 (575)
                      +|.+...|........+.++++.+-..|++++...|....+|......-.+.++   ++.+...|++++...
T Consensus        62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~  133 (679)
T 4e6h_A           62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE  133 (679)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS
T ss_pred             CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc
Confidence            366788999999999999999999999999999999999999999999999999   999999999999988

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.07  E-value=4.9  Score=30.61  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=27.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~  518 (575)
                      .+.+..+..+|...-+.|+|++|+.+|.++|+.
T Consensus        16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            356777888899999999999999999988864

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=82.67  E-value=6.1  Score=30.05  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~  518 (575)
                      +++..+..++...-+.|+|++|+.+|.++|+.
T Consensus         9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A            9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45667888888899999999999999988864

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.46  E-value=3.8  Score=42.02  Aligned_cols=85  Identities=9%  Similarity=-0.105  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT---SATYYSNRAAAYLELGCFQQAEEDCSKTISL--DKKVRARVGYV  563 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l--~P~~~~~~~~~  563 (575)
                      ...+..+|..+++.|++++|++.|.++......   -...+.+.-.+++..++|..+...++++-.+  ...++..++++
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            345678999999999999999999999987543   3678889999999999999999999998654  22334445555


Q ss_pred             HHHHHHhhhh
Q 008170          564 DCSMLIYLLC  573 (575)
Q Consensus       564 ~~~l~~~~~~  573 (575)
                      ....|.+.++
T Consensus       211 k~~~gl~~l~  220 (429)
T 4b4t_R          211 KTYYGIHCLA  220 (429)
T ss_dssp             HHHHHHGGGG
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.40  E-value=3.6  Score=34.90  Aligned_cols=47  Identities=11%  Similarity=0.037  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY  533 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~  533 (575)
                      ..-+.++-.+..+++.|+|++|.++.+..|+.+|++..+..-+..+-
T Consensus        75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A           75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  121 (144)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            35667888999999999999999999999999999988766554443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.83  E-value=4.2  Score=33.99  Aligned_cols=47  Identities=11%  Similarity=0.037  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAY  533 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~  533 (575)
                      ..-+.++-.+..+++.|+|++|.++.+..|+.+|++..+..-+..+-
T Consensus        76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            45678888999999999999999999999999999988877665554

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=80.43  E-value=8.9  Score=31.31  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=28.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~  518 (575)
                      .+.+..+..++...-+.++|++|+.+|.+++++
T Consensus        15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~   47 (117)
T 2cpt_A           15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   47 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            466777888888888999999999999998875

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.20  E-value=11  Score=38.09  Aligned_cols=79  Identities=10%  Similarity=-0.006  Sum_probs=61.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Q 008170          494 EKGNAAFKGKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD---KKVRARVGYVD  564 (575)
Q Consensus       494 ~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~---P~~~~~~~~~~  564 (575)
                      .+|..|+..|+|.+|+..+++.++....      ..+++......|..++++.++...++++.+..   +-.+...+.+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6899999999999999999999875322      15778999999999999999999999997653   12345556666


Q ss_pred             HHHHHhhh
Q 008170          565 CSMLIYLL  572 (575)
Q Consensus       565 ~~l~~~~~  572 (575)
                      .+.|.+.+
T Consensus       184 ~~~Gi~~l  191 (394)
T 3txn_A          184 LQSGILHA  191 (394)
T ss_dssp             HHHHHHHH
T ss_pred             HHhhHHHH
Confidence            66665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	575
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	6e-50
d2f2aa1	485	c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf	4e-49
d1m22a_	490	c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon	3e-29
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	6e-24
d1mt5a_	537	c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid	1e-21
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	5e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-08
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	8e-08
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-04
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	6e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-07
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-06
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	6e-06
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	8e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-04
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score =  177 bits (449), Expect = 6e-50
 Identities = 105/479 (21%), Positives = 186/479 (38%), Gaps = 58/479 (12%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQ---PLAGLKFAIKDVF 84
           +   +L    R +P +       AF+   E           + +      G+  AIKD  
Sbjct: 25  LPQLSLETIKRLDPHVK------AFISVRE---------NVSVEKKGKFWGIPVAIKDNI 69

Query: 85  DVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGT 144
              G  T   S   +  ++E+   A VV  + + G   +GK  LDEFA G + E   +  
Sbjct: 70  LTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFP 127

Query: 145 PVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSM 204
             NP     +PGGSS GSA AV+A +V  ALG+DT G VR PAS CG++GY+P++G VS 
Sbjct: 128 TRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSR 187

Query: 205 IGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLK 264
            G++  + SLD +G + +       +  ++   +  +     R +      +        
Sbjct: 188 YGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKF 247

Query: 265 TIH--------------VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRA--QSTSP 308
            +                  +A++ L            +     +P +K   A     +P
Sbjct: 248 AVPEEIYEHDIEEGVSERFEEALKLLER-------LGAKVERVKIPHIKYSVATYYVIAP 300

Query: 309 ENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINT-----TQDN 363
              ++ L     V   L R + K + E ++K+     G  V  R++    T      +  
Sbjct: 301 AEASSNLARFDGVKYGL-RIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAY 359

Query: 364 IKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSM 423
                KVR ++   L  +L     ++ PT      K+   K     +     + +   ++
Sbjct: 360 FNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYY--LMDIFTIPANL 417

Query: 424 SGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQEQVNIASN-LVPLPD 481
           +G   +++P G  N  P+ +  I     D      V  +  ++++      N + PLP+
Sbjct: 418 AGLPAISVPFGFSNNLPVGVQVIGRRFAD----GKVFRIARAIEKNSPYNENGMFPLPE 472

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  175 bits (444), Expect = 4e-49
 Identities = 102/454 (22%), Positives = 175/454 (38%), Gaps = 37/454 (8%)

Query: 30  VLAETLRR--RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFD 85
           V+ +        +P +     +D    +++ + +             L G+   IKD   
Sbjct: 25  VVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD-ELQAKDQMDGKLFGIPMGIKDNII 83

Query: 86  VKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTP 145
             G  T   S   +      E T +      K  A  IGK  +DEFA G + E  ++   
Sbjct: 84  TNGLETTCASKMLEGFVPIYESTVMEKLH--KENAVLIGKLNMDEFAMGGSTETSYFKKT 141

Query: 146 VNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMI 205
           VNP     +PGGSS GSA AVAA LV  +LG+DT G +R PA++CG++G +P++G VS  
Sbjct: 142 VNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRF 201

Query: 206 GVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKT 265
           G++  + SLD +G L RN      V   +   +  +   A      D   ++ K  K   
Sbjct: 202 GLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDD-VDFTSEIGKDIKGLK 260

Query: 266 IHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQ-----------------STSP 308
           + +                 +V + + + V +LK L A                    + 
Sbjct: 261 VALPK------EYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVIAS 314

Query: 309 ENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNI---- 364
              ++ L     +       E  ++ E +  S     G  V  R+               
Sbjct: 315 SEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAY 374

Query: 365 -KILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSM 423
            K   KVR  ++    ++ ++  ++V PT       L  +       +   L L++  ++
Sbjct: 375 YKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDL-LTTPVNL 433

Query: 424 SGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD 457
           +G   +++P G+ N  PI + FI     +K L  
Sbjct: 434 AGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYR 467

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

 Score =  118 bits (296), Expect = 3e-29
 Identities = 104/458 (22%), Positives = 167/458 (36%), Gaps = 42/458 (9%)

Query: 30  VLAETLRR-----RRNPKLNG--RVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKD 82
           +    L+R     R  P+L     ++  A  E  E     +      R PL G+   +KD
Sbjct: 26  LTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDR--ERRDGRLRGPLHGIPLLLKD 83

Query: 83  VFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFG-----ITG 137
             +     T  GS             A +V  L   GA  +GKT L E+A       I+G
Sbjct: 84  NINAAPMATSAGSLAL---QGFRPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISG 140

Query: 138 ENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRP 197
            +   G   NP   SH P GSSSGSAVAVAA L   A+GT+T G +  PA+  G++G +P
Sbjct: 141 WSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKP 200

Query: 198 SHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQL 257
           + G VS  G++P S S DT G +AR+ +    V   +   +  +P  A     A   +  
Sbjct: 201 TVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADPATATMPGRAVYDYTA 260

Query: 258 SKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENG------ 311
              P+      I      L  Y+    +               +  +  +          
Sbjct: 261 RLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVPVELPNQGAWAEAERT 320

Query: 312 --TATLKALSSVMLSLQRYEFKT---IYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKI 366
                 KA      +  R   ++   +       +K  LG    E ++EA  T       
Sbjct: 321 LLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLADPA 380

Query: 367 LYKVRNEMRAALQRLLKDDK-------ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSS 419
             + R++ R        D          LV PT        +    +  E         S
Sbjct: 381 YIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGES-------YS 433

Query: 420 IGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLD 457
             +++G   + +P+G+ +  P+ + F+     +  L++
Sbjct: 434 AAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIE 471

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score =  102 bits (253), Expect = 6e-24
 Identities = 90/431 (20%), Positives = 146/431 (33%), Gaps = 51/431 (11%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVK 87
            +A++      R  +++      AF+   +           A  PL G+   IKD+ D  
Sbjct: 21  AIAQSHAAIEAREKEVH------AFVRHDKSAR------AQASGPLRGIAVGIKDIIDTA 68

Query: 88  GYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVN 147
              T  GS  ++    +    A VV +L + GAT IGKT    FA             +N
Sbjct: 69  NMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLN 120

Query: 148 PQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGV 207
           P    H PGGSSSGSA AV A ++  ALGT T G V  PA++CG    +PS   +  +GV
Sbjct: 121 PHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGV 180

Query: 208 LPNSQSLDTVGLLARNASILHRVGHVLLQLNAVEPRRARRLIFADDIFQLSKVPKLKTIH 267
              S +LDTVGL    A  L R    +                  +   +      +   
Sbjct: 181 KCYSWALDTVGLFGARAEDLARGLLAMTG--------------RSEFSGIVPAKAPRIGV 226

Query: 268 VISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQR 327
           V  +   ++            +       S++ +       E                  
Sbjct: 227 VRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALA 286

Query: 328 YEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKI 387
           +EF   ++E            +   +   +  T        ++    R  L  + +   +
Sbjct: 287 WEFSEHHDEIA--------PMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDV 338

Query: 388 LVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFIT 447
           L+  +            T    ++        + ++ G   V +P+ K    PI +  I 
Sbjct: 339 LLTYSAPGTAPAKALASTGDPRYNR-------LWTLMGNPCVNVPVLKVGGLPIGVQVIA 391

Query: 448 YHGGDKFLLDT 458
             G D   L T
Sbjct: 392 RFGNDAHALAT 402

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.3 bits (238), Expect = 1e-21
 Identities = 80/490 (16%), Positives = 142/490 (28%), Gaps = 86/490 (17%)

Query: 30  VLAETLRR--RRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQ--------PLAGLKFA 79
           V    L +    N   N                          Q         L G+  +
Sbjct: 60  VFFTYLGKAWEVNKGTN------CVTSYL---------TDCETQLSQAPRQGLLYGVPVS 104

Query: 80  IKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGEN 139
           +K+ F  KG+ +  G    +     +E   VVV +L   GA     T + +        N
Sbjct: 105 LKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSN 162

Query: 140 KHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSH 199
             +G  +NP   S  PGGSS G    + +      LGTD  G +R P++FCGI G +P+ 
Sbjct: 163 PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTG 222

Query: 200 GTVSMIGVLP----NSQSLDTVGLLARNASILHRVGHVLL------QLNAVEPRRARRLI 249
             +S  G+       +    ++G +AR+   L      LL          V P   R  +
Sbjct: 223 NRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVPPLPFREEV 282

Query: 250 FADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVP-----SLKGLRAQ 304
           +           +     + S A+              G  +   +P     +L+ L A 
Sbjct: 283 YRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAG 342

Query: 305 STSPENGTATL--KALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTTQD 362
               + G + L       V   L           W K     L   +F R+   +N+ + 
Sbjct: 343 GLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRP 402

Query: 363 NIKILY----KVRNEMRAALQRLLKDDKILVI--PTVSDPPLKLNTKKTYSAEFHDRTLV 416
                           R ++    K   + V+  P +          +   A      + 
Sbjct: 403 RSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGA------IS 456

Query: 417 LSSIGSMSGCCQVAIPIGKYNEH------------------------------PISISFI 446
            + + +        +P+                                    P+++  +
Sbjct: 457 YTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCV 516

Query: 447 TYHGGDKFLL 456
                ++  L
Sbjct: 517 ALPWQEELCL 526

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 5e-11
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 34/102 (33%)

Query: 488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNR------------------ 529
           +++ LKE+GN  F G+++ +A   Y  AI  N   A YY+NR                  
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 530 ----------------AAAYLELGCFQQAEEDCSKTISLDKK 555
                               LE+  + +A  +  +  SL K+
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 3/64 (4%), Positives = 19/64 (29%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
             E  +  ++   +  A  +  +  +    +       ++ + +     ++    +  I 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 552 LDKK 555
            +  
Sbjct: 62  QNPL 65

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK 555
            N   +     +AV  Y +A+++    A  +SN A+   + G  Q+A     + I +   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG 537
           + +       +   +  +  +A+ +Y EAI+++ T A  YSN      E+ 
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
           D + +L    +  F+ ++ +++ ++ + AIK N   A  YSN    Y E G  Q+A E  
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
            KE GN A+K K ++ A+ +Y +A +L+ T+ TY +N+AA Y E G + +  E C K I 
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66

Query: 552 LDKK 555
           + ++
Sbjct: 67  VGRE 70

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 1/69 (1%)

Query: 483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQA 542
           N   D  +   E+G    +      AV  +  A++ +      +        E      A
Sbjct: 14  NPLRDHPQPF-EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 72

Query: 543 EEDCSKTIS 551
                + + 
Sbjct: 73  ISALRRCLE 81

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 8e-08
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTIS 551
           L  +G  A   K W  A++ +S     +   +    N    Y  L    +AE+  +++I+
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPH---SRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 552 L 552
            
Sbjct: 65  R 65

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 10/60 (16%), Positives = 24/60 (40%)

Query: 494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
           +    A    + N+ ++Y    ++    +     N A  Y +   +++AEE  +   S+ 
Sbjct: 91  KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 6e-07
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 35/125 (28%)

Query: 480 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYS-------------------------- 513
           P  +G++  +E LK + N  FK K +  A+ +YS                          
Sbjct: 1   PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 60

Query: 514 --------EAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK-VRARVGYVD 564
                    AI+L+      Y  RAA+ + LG F+ A  D    + +      A++ Y +
Sbjct: 61  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120

Query: 565 CSMLI 569
           C+ ++
Sbjct: 121 CNKIV 125

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.5 bits (115), Expect = 7e-07
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 496 GNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
              A    Q  +A+    EAIK +   A+  S+        G F++A+E   ++I L 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 16/81 (19%)

Query: 478 PLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------------GTSATY 525
           PL +    +  + L            ++++A      A++++            G  A  
Sbjct: 2   PLKE----VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFC 57

Query: 526 YSNRAAAYLELGCFQQAEEDC 546
           ++  A A   L  F +A    
Sbjct: 58  HAGLAEALAGLRSFDEALHSA 78

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 16/77 (20%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSE----------------AIKLNGTSATYYSNR 529
           + ++  +KE+GN  FK  + N+A+  Y E                  K      +   N 
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73

Query: 530 AAAYLELGCFQQAEEDC 546
           A  Y +   + +A +  
Sbjct: 74  ATCYNKNKDYPKAIDHA 90

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (107), Expect = 6e-06
 Identities = 10/90 (11%), Positives = 24/90 (26%), Gaps = 6/90 (6%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------ATYYSNRAAAYLELGCFQ 540
           +A++L  +        K+ N A + + +A      +         Y      +   G   
Sbjct: 35  EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94

Query: 541 QAEEDCSKTISLDKKVRARVGYVDCSMLIY 570
            A +     I +           +    + 
Sbjct: 95  NAVDSLENAIQIFTHRGQFRRGANFKFELG 124

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 15/85 (17%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL---------------NGTSATYYSNRA 530
           ++ + ++KEKG   FKG ++ +AV  Y + +                        + N A
Sbjct: 12  LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71

Query: 531 AAYLELGCFQQAEEDCSKTISLDKK 555
             YL+L  + +A E C K + LD  
Sbjct: 72  MCYLKLREYTKAVECCDKALGLDSA 96

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 34/103 (33%)

Query: 487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRA---------------- 530
           +    LKEKGN A      + A+  YSEAIKL+  +   YSNR+                
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 531 ------------------AAYLELGCFQQAEEDCSKTISLDKK 555
                             AA   L  F++A+    + +  +  
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 103

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 10/51 (19%), Positives = 25/51 (49%)

Query: 486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL 536
           ++ S ++KE+G   FK  ++ +A+  Y + +      +++ +  A     L
Sbjct: 10  LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 462 LYDSLQEQVNIASNLVPLPDTNGS-----IDASELLKE----KGNAAFKGKQWNKAVNYY 512
           LY    E     +++ P+P  +G      I  S+  ++          + ++  +A    
Sbjct: 11  LYRDRAE----WADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT 66

Query: 513 SEAIKLNGTSATYYSNRAAAYLELG-CFQQAEEDCSKTISLDKK 555
            +AI+LN  + T +  R      L     +     +  I    K
Sbjct: 67  RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 110

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 21/102 (20%)

Query: 461 DLYDSLQEQVNIASNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEA----- 515
           D +    E  ++      L D +  +  SE LK  GN  FK + W  A+  Y++      
Sbjct: 4   DSHPDFPEDADVD-----LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE 58

Query: 516 -----------IKLNGTSATYYSNRAAAYLELGCFQQAEEDC 546
                       KL   + +   N  A  L++  +Q A + C
Sbjct: 59  GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 100

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 7/60 (11%), Positives = 18/60 (30%)

Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
           +      +     A        + + Y+S    ++   A Y  +  + +L      + E 
Sbjct: 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 331

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 26/69 (37%)

Query: 485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE 544
           S      L   G+ A    Q ++A +YY  A +L  ++   Y+  A      G       
Sbjct: 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF 207

Query: 545 DCSKTISLD 553
              ++I++ 
Sbjct: 208 YYCRSIAVK 216

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 7/48 (14%), Positives = 12/48 (25%), Gaps = 3/48 (6%)

Query: 506 NKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLD 553
            ++  Y  +A  L           A  +      Q       K +  D
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	575
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	100.0
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	100.0
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	100.0
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	100.0
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	100.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.42
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.37
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.14
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.14
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.09
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.08
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.03
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.99
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.98
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.95
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.95
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.94
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.94
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.88
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.83
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.76
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.73
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.7
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.7
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.68
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.66
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.65
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.6
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.53
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.34
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.31
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.0
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.99
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.87
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.69
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.58
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.56
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.82
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.6
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.33
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	95.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.4
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	95.08
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	94.29
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.22
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	88.95
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.15
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	82.41

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.9e-87  Score=714.06  Aligned_cols=413  Identities=23%  Similarity=0.295  Sum_probs=320.9

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCC
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (575)
                      +.+|++||++.+++||+++||.+|||++..++++++      .+||||||||+|||+|+++|++||+||+.|++  .++.
T Consensus        18 ~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~~------~~gpL~GvPi~vKD~~~~~g~~tt~Gs~~~~~--~~~~   89 (475)
T d2gi3a1          18 SEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE------KKGKFWGIPVAIKDNILTLGMRTTCASRILEN--YESV   89 (475)
T ss_dssp             CHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC------CCSTTTTCEEEEETTBCCSSSCCCTTCGGGTT--CCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCcCCEEEEcCHHHhhh------ccCCCCCCEEEEEcccCCCCCccCccChhhcC--CCCC
Confidence            559999999999999999999999999998877654      35899999999999999999999999999975  6789


Q ss_pred             CchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccc
Q 008170          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (575)
Q Consensus       107 ~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiP  186 (575)
                      +||++|+|||++||||+||||||||+++.+++|.+||+|+||||++++|||||||||||||+|++++|||||||||||+|
T Consensus        90 ~da~~v~~L~~aGaii~Gktn~~e~~~~~~~~~~~~G~t~nP~~~~~~~GGSSgGsaaavAag~~~~a~GtD~gGSiR~P  169 (475)
T d2gi3a1          90 FDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQP  169 (475)
T ss_dssp             SCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHH
T ss_pred             CCcceeeehhhcCCccccccchhhcccccccccchhcccccccccccccCcccccchhhhhhcCcceEeecCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC----------------cccCceEEe
Q 008170          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE----------------PRRARRLIF  250 (575)
Q Consensus       187 Aa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----------------~~~~~~l~~  250 (575)
                      |+||||||||||+||||+.|++|+++++|++||||||++|++.+++++.+.+..+                ...+.++.+
T Consensus       170 A~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~d~~d~~s~~~~~~~~~~~~~~~~~~ri~~  249 (475)
T d2gi3a1         170 ASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIEEGVSGMKFAV  249 (475)
T ss_dssp             HHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTTSCCTTCEEEE
T ss_pred             hHHhCceeecCCCCCCCCCCCCCCCCCCCccCCccCCHHHHHHHhhhhhccccccccccccccccchhccccccccceee
Confidence            9999999999999999999999999999999999999999999999987654321                112345555


Q ss_pred             ccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhh-
Q 008170          251 ADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYE-  329 (575)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e-  329 (575)
                      ..+.+  ....++++.++++++++.|+..+.       ..++...|.+......+        ......+....+..+. 
T Consensus       250 ~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~-------~V~ev~~p~~~~~~~~~--------~~i~~~e~~~~l~~~~~  312 (475)
T d2gi3a1         250 PEEIY--EHDIEEGVSERFEEALKLLERLGA-------KVERVKIPHIKYSVATY--------YVIAPAEASSNLARFDG  312 (475)
T ss_dssp             EGGGG--GSCCCHHHHHHHHHHHHHHHHTTC-------EEEEECCTTGGGHHHHH--------HHHHHHHHHTC------
T ss_pred             eeccc--cCCCCHHHHHHHHHHHHHHHHCCC-------EEEEeCCCchHHHHHHH--------HHHHHHHHHHHHHHhhc
Confidence            54433  223467889999999998874332       11112234332111100        0000001000000000 


Q ss_pred             --------hhhhHHHHHHHcCCCCCHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q 008170          330 --------FKTIYEEWVKSAKPRLGYNVFERVLEAINTT-----QDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDP  396 (575)
Q Consensus       330 --------~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~  396 (575)
                              .....+.+.......+++.++.++..+....     ...+.++.+.|..+++.+.++|+++|+||+||++.+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~  392 (475)
T d2gi3a1         313 VKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVT  392 (475)
T ss_dssp             ------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEEESCSSC
T ss_pred             chhhhhcccccHHHHHHhhhhcccCHHHHHHHHhcchhhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCC
Confidence                    0000111222222345567777666554332     333455667788888999999999999999999999


Q ss_pred             CCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          397 PLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       397 ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      ||++++...... + ..+..||.++|++|+|+||||+|+.+|||+||||+|++|+|..||++++++|+..
T Consensus       393 a~~~~~~~~~~~-~-~~~~~~t~~~Nl~G~PaisvP~G~s~GlPvGvQlig~~~~D~~LL~~A~~~E~~~  460 (475)
T d2gi3a1         393 AFKIGEIKDPLT-Y-YLMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKNS  460 (475)
T ss_dssp             CCBTTTCCCHHH-H-HTTTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCcccccchHH-H-hhhhHHHHHHHHHCCCeEEEeCCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHcC
Confidence            999986432221 1 2234589999999999999999999999999999999999999999999999864

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.9e-86  Score=718.50  Aligned_cols=439  Identities=16%  Similarity=0.179  Sum_probs=342.7

Q ss_pred             CccceeecCCCCchhHHHHHHHhhch-----hHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCce
Q 008170            3 KSFNIIKTNTSNPKVWVVIGVSVVGF-----VVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLK   77 (575)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvp   77 (575)
                      +.|.+-++++...+++.+++.+|+++     +|++|+++++++||++.|+.+|||++.+++++.+.++ +...|||||||
T Consensus        24 ~~~~~~~~~~~~~~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a~-~~~~gpL~GvP  102 (537)
T d1mt5a_          24 QRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQ-APRQGLLYGVP  102 (537)
T ss_dssp             HHHHTTCCSSCSHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHHT-CCTTSTTTTCE
T ss_pred             HhhhhcCCCCChHHHHhCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEcCHHHHHHHHc-CCCCCCcCCCe
Confidence            34566667777777888889998855     9999999999999999999999999998887654443 45679999999


Q ss_pred             EEeecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 008170           78 FAIKDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGG  157 (575)
Q Consensus        78 i~vKD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GG  157 (575)
                      |+|||+|+|+|++||+||+.|.+  .++.+||++|+|||+|||||+||||||||+++.+|+|++||+|+||||++++|||
T Consensus       103 i~vKD~~~~~g~~tt~Gs~~~~~--~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~~~~GG  180 (537)
T d1mt5a_         103 VSLKECFSYKGHDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGG  180 (537)
T ss_dssp             EEEETTSCCBTSBCCSSCGGGSS--CBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSCCCTTTCCCCCSSCTTSCCCS
T ss_pred             EEeEcccCcCCCccCccChhhcC--CCCCccHHHHHHHHhCCCEEeecccccccccccchhhhhhcccccccccccccCC
Confidence            99999999999999999999975  6789999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCC----CCccccccccCHHHHHHHHHH
Q 008170          158 SSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQ----SLDTVGLLARNASILHRVGHV  233 (575)
Q Consensus       158 SSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~  233 (575)
                      ||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|.++    ++|++|||+||++|++.++++
T Consensus       181 SSgGsaaavaag~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~~l~~  260 (537)
T d1mt5a_         181 SSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKA  260 (537)
T ss_dssp             SSHHHHHHHGGGSCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHHHHHH
T ss_pred             CcCCccccccccccccccccccccccchhhhhcCceeeeccccccCCCCCCCcccccccccccCCCccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998754    569999999999999999998


Q ss_pred             HccCCC------C----------CcccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchh-hccCc
Q 008170          234 LLQLNA------V----------EPRRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYI-ASNVP  296 (575)
Q Consensus       234 ~~~~~~------~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v-~~~~p  296 (575)
                      +.+.+.      .          ....+.|+.+..+..  ...+++++.++++++++.|+..+.        .| +...|
T Consensus       261 l~g~d~~d~~~~~~~~~~~~~~~~~~k~lRIg~~~~~~--~~~~~p~v~~a~~~a~~~L~~~Ga--------~Vvev~~~  330 (537)
T d1mt5a_         261 LLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGH--------TLIPFLPN  330 (537)
T ss_dssp             HSSHHHHHSCTTSCCCCCCHHHHSCCSCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTC--------EEEECCCT
T ss_pred             hcCCCccccccccCcchhhhhhhhcccccceeeecccc--cccccHHHHHHHhhhHHhhccccc--------eEEecCCc
Confidence            875321      0          012234566554432  233568899999999999973332        11 11222


Q ss_pred             chHHhhhcc------C----------CCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 008170          297 SLKGLRAQS------T----------SPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAKPRLGYNVFERVLEAINTT  360 (575)
Q Consensus       297 ~l~~~~~~~------~----------~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~s  360 (575)
                      .+.......      .          ..+.....+..+.      ...+......+.+......+.+.+...++.+...+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (537)
T d1mt5a_         331 NIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLI------LILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRS  404 (537)
T ss_dssp             THHHHHHTTHHHHHSTTTTHHHHGGGTTCCCCGGGTTHH------HHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSCCB
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHH------HHHhhhhHHHHHHHHHhhcccHHHHHHHHhcccch
Confidence            222110000      0          0000000000000      00011111222333333456677777788888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhC--CCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccc---
Q 008170          361 QDNIKILYKVRNEMRAALQRLLK--DDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGK---  435 (575)
Q Consensus       361 ~~~~~~a~~~r~~~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~---  435 (575)
                      ..+|.+++..|..+++.+.++|+  ++|+||+||++ ++++++....     ...++.||.+||++|+|++|||+|+   
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~-----~~~~~~~T~~~NllG~PaisvP~g~v~~  478 (537)
T d1mt5a_         405 AEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGR-----ATGAISYTVLYNCLDFPAGVVPVTTVTA  478 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCC-SCCCSSCGGG-----CGGGGHHHHHHHHTTCCEEEEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCC-CccCcCChhh-----hhcccchHHHHHHhCCCeEEEEcCcccc
Confidence            99999999999999999999996  68999999987 5555553211     1134468999999999999999996   


Q ss_pred             --------------------------c-CCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          436 --------------------------Y-NEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       436 --------------------------~-~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                                                . +|||+||||||++|+|..||++++++|+.+
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L  536 (537)
T d1mt5a_         479 EDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM  536 (537)
T ss_dssp             TTTTGGGSCCCSSCSHHHHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHHh
Confidence                                      3 699999999999999999999999999865

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.2e-85  Score=706.07  Aligned_cols=419  Identities=24%  Similarity=0.307  Sum_probs=331.2

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEeecccccCCccccCCChhhh
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWK   99 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~   99 (575)
                      +.+|++|+++.|++||+++|+.+|||++.+++.++++|+       .++.+||||||||+|||+|+|+|++||+||..|.
T Consensus        18 ~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~~~v~g~~tt~Gs~~~~   97 (485)
T d2f2aa1          18 KKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLE   97 (485)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTTBCCCTTCGGGT
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEEEcccccCCCccCCcChhhc
Confidence            449999999999999999999999999998887766654       3567899999999999999999999999999997


Q ss_pred             ccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCC
Q 008170          100 RDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDT  179 (575)
Q Consensus       100 ~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDt  179 (575)
                      +  ..+.+|+++|++|+++|||++||||||||+++.++.|.+||+|+||||++++|||||||||||||+|++|+||||||
T Consensus        98 ~--~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaaavA~g~~~~alGtDt  175 (485)
T d2f2aa1          98 G--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDT  175 (485)
T ss_dssp             T--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSCEEEECS
T ss_pred             c--CCccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCccccchhhHHhccCceEEecCC
Confidence            5  57789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC-----------------c
Q 008170          180 IGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE-----------------P  242 (575)
Q Consensus       180 gGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------~  242 (575)
                      |||||+||+||||||||||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+                 .
T Consensus       176 ~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~~~~~~~~~~~~~~~~  255 (485)
T d2f2aa1         176 GGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDFTSEIGKD  255 (485)
T ss_dssp             SSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTSCCCCCCCCSTTTTCC
T ss_pred             CchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccccCCCCccchhhhhcCC
Confidence            99999999999999999999999999999999999999999999999999999987653221                 1


Q ss_pred             ccCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCC-CccccccchhhccCcchHHhhhccCCCCCchhHHHHHHHH
Q 008170          243 RRARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQN-PEHMNVGQYIASNVPSLKGLRAQSTSPENGTATLKALSSV  321 (575)
Q Consensus       243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~-~~~~~~~~~v~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~  321 (575)
                      ..+.++.++.+.+.  ...++++.++++++++.|+..+. ++++        .+|........+        ......+.
T Consensus       256 ~~~lrig~~~~~~~--~~~~~~i~~a~~~a~~~L~~~G~~v~ev--------~lp~~~~~~~~~--------~~~~~~e~  317 (485)
T d2f2aa1         256 IKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEEV--------SLPNTKFGIPSY--------YVIASSEA  317 (485)
T ss_dssp             CTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEEE--------CCTTGGGHHHHH--------HHHHHHHH
T ss_pred             ccCCEEEEEccccc--CcCCHHHHHHHHHHHHHHHHCCCEEEEe--------CCCchhhhHHHH--------HHHHHHHH
Confidence            12345666655432  23467888999999998864332 1122        233321110000        00000011


Q ss_pred             HHHHHhhh---------hhhhHHHH-HHHcCCCCCHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 008170          322 MLSLQRYE---------FKTIYEEW-VKSAKPRLGYNVFERVLEA-----INTTQDNIKILYKVRNEMRAALQRLLKDDK  386 (575)
Q Consensus       322 ~~~l~~~e---------~~~~~~~~-~~~~~~~l~~~~~~~l~~~-----~~~s~~~~~~a~~~r~~~~~~~~~~~~~~D  386 (575)
                      ...+..+.         ......++ .....+.+++.++.++..+     ..+....+.++++.+..+++.++++|+++|
T Consensus       318 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~f~~~D  397 (485)
T d2f2aa1         318 SSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYD  397 (485)
T ss_dssp             HHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHhhhhhhccccccccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            11111100         00011111 1122234677777776554     344556778888999999999999999999


Q ss_pred             EEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHh
Q 008170          387 ILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSL  466 (575)
Q Consensus       387 vLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~  466 (575)
                      +||+||++.+||++++......... ....||.++|++|+|++|||+|..+|||+||||+|++|+|..||++|+++|+..
T Consensus       398 ~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~G~~dGlPvGlQiig~~~~D~~LL~~A~~~E~~~  476 (485)
T d2f2aa1         398 VVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQY  476 (485)
T ss_dssp             EEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred             EEEeCCCCCCCCCcccccCCHHHHh-hhhHHHHHHHHHCCCeEEEECCCCCCCCEeEEEECCCCCHHHHHHHHHHHHhhC
Confidence            9999999999999986543322221 223479999999999999999999999999999999999999999999999753

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=100.00  E-value=3.8e-84  Score=680.15  Aligned_cols=394  Identities=24%  Similarity=0.300  Sum_probs=331.1

Q ss_pred             chhHHHHHHHHhhcccccCCCCcCcEEeeccCCCCCCCCCCCCCCCCCCceEEeecccccCCccccCCChhhhccCCCCC
Q 008170           27 GFVVLAETLRRRRNPKLNGRVDFGAFLERFELIPFPQPPPPAARQPLAGLKFAIKDVFDVKGYVTGFGSPDWKRDHHEAE  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~gpL~Gvpi~vKD~~~~~G~~tt~Gs~~~~~~~~~~~  106 (575)
                      +.+|++|+++.+++||+++|+.+|||++..+++      .+..+||||||||+|||+|+|+|++||+||+.|.+  .++.
T Consensus        14 ~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~~------~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~   85 (412)
T d1ocka_          14 GELSPNAAIAQSHAAIEAREKEVHAFVRHDKSA------RAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRG--WQPR   85 (412)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTC------CCCSSSTTTTCEEEEETTBCCSSSCCCTTSGGGTT--CCCS
T ss_pred             CCCCHHHHHHHHHHHHHHhCcccCChHhhhHHh------cCccCCCcCCCEEEEEcccCCCCCcccccChhhhC--CCCc
Confidence            449999999999999999999999999864321      23567999999999999999999999999999975  5789


Q ss_pred             CchHHHHHHHHCCCeEEeecccccccccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHhcCCceeeccCCCCccccc
Q 008170          107 RTAVVVTLLLKNGATCIGKTVLDEFAFGITGENKHYGTPVNPQMPSHIPGGSSSGSAVAVAAQLVDFALGTDTIGCVRVP  186 (575)
Q Consensus       107 ~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~n~~~G~~~NP~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiRiP  186 (575)
                      +||++|+||+++|||++||||||||+++      .+|.++|||++.++|||||||||++||+|++++|+|||||||||+|
T Consensus        86 ~~a~~V~~L~~aGaii~gkt~~~e~~~~------~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~GsDtgGSiR~P  159 (412)
T d1ocka_          86 SDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRP  159 (412)
T ss_dssp             SCCHHHHHHHHTTCEEEEEECCCGGGSS------CCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHH
T ss_pred             ceeeEEeeecccccccchhhhhhhhhcc------ccccccccccccccCCCcCCCceeeeecccccccCccccccccccc
Confidence            9999999999999999999999999976      5788999999999999999999999999999999999999999999


Q ss_pred             cccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHccCCCCC---cccCceEEeccchhhhcCCCch
Q 008170          187 ASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLLQLNAVE---PRRARRLIFADDIFQLSKVPKL  263 (575)
Q Consensus       187 Aa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~  263 (575)
                      |+||||||||||+||||+.|++|.++++|++|||+|+++|++.+++++.+.+..+   +....++.+..+.+  ....++
T Consensus       160 Aa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~~~~--~~~~~~  237 (412)
T d1ocka_         160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEF--AGAVEP  237 (412)
T ss_dssp             HHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGG--GCCCCH
T ss_pred             hhhhcchhcccccccccccccccccchhcccccccccHHHHHHHHHhhcCCCcccccCCccccccccccccc--cccchh
Confidence            9999999999999999999999999999999999999999999999987654322   22334455444333  233467


Q ss_pred             HHHHHHHHHHHHHhCCCCCccccccchhhc-cCcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHHcC
Q 008170          264 KTIHVISKAIESLSGYQNPEHMNVGQYIAS-NVPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVKSAK  342 (575)
Q Consensus       264 ~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~  342 (575)
                      ++.+.++++++.|...+.        .+++ ..+..                .......+..+..++....+..++....
T Consensus       238 ~v~~~~~~a~~~L~~~G~--------~v~e~~~~~~----------------~~~~~~~~~~~~~~e~~~~~~~~~~~~~  293 (412)
T d1ocka_         238 AAEQGLQAAIKAAERAGA--------SVQAIDLPEA----------------VHEAWRIHPIIQDFEAHRALAWEFSEHH  293 (412)
T ss_dssp             HHHHHHHHHHHHHHHTTC--------EEEECCCCHH----------------HHHHHHHHHHHHHHHHHHHTHHHHHHSG
T ss_pred             HHHHHHHHHHHHHHHhhh--------ccccccccch----------------hhhhhhhhhhhhhHHHHHHHHHhhcccc
Confidence            889999999999864332        1111 11211                1111122233344466666667777777


Q ss_pred             CCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccc
Q 008170          343 PRLGYNVFERVLEAINTTQDNIKILYKVRNEMRAALQRLLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGS  422 (575)
Q Consensus       343 ~~l~~~~~~~l~~~~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n  422 (575)
                      +.+.+.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.+||.++.....       ...||.++|
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~-------~~~~t~~~n  366 (412)
T d1ocka_         294 DEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRLWT  366 (412)
T ss_dssp             GGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CCTTTHHHH
T ss_pred             ccchhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHcCCCEEEeCCCCCCCccccccccC-------ChHHhHHHH
Confidence            8889999999999999999999999999999999999999999999999999999887643221       124789999


Q ss_pred             cCCCCcccccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          423 MSGCCQVAIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       423 l~G~PaisvP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      ++|+|++|||+|..+|||+||||+|++++|..||++++++|+.+.
T Consensus       367 l~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL~~A~~~E~alg  411 (412)
T d1ocka_         367 LMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (412)
T ss_dssp             HHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHHHHHHT
T ss_pred             HHCCCeEEEeccCCCCceEeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999889999999999999999999999999999764

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=100.00  E-value=3.2e-82  Score=680.84  Aligned_cols=413  Identities=22%  Similarity=0.234  Sum_probs=303.9

Q ss_pred             hhHHHHHHHhhch-----hHHHHHHHHhhcccc---cCCCCcCcEEeeccCCCCCCCC-------CCCCCCCCCCceEEe
Q 008170           16 KVWVVIGVSVVGF-----VVLAETLRRRRNPKL---NGRVDFGAFLERFELIPFPQPP-------PPAARQPLAGLKFAI   80 (575)
Q Consensus        16 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~a~-------~~~~~gpL~Gvpi~v   80 (575)
                      ++...|+.+|+..     +|++|+++++++||+   +.||.+|||++.+++ ++++|+       .+..+||||||||+|
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~v   81 (490)
T d1m22a_           3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL   81 (490)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred             CcccCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHH-HHHHHHHHHHHHHCCCCCCCcCCCEEEE
Confidence            3444566676644     999999999999986   567999999998765 444442       467889999999999


Q ss_pred             ecccccCCccccCCChhhhccCCCCCCchHHHHHHHHCCCeEEeecccccccccCCCC-----CCCCCCCCCCCCCCCCC
Q 008170           81 KDVFDVKGYVTGFGSPDWKRDHHEAERTAVVVTLLLKNGATCIGKTVLDEFAFGITGE-----NKHYGTPVNPQMPSHIP  155 (575)
Q Consensus        81 KD~~~~~G~~tt~Gs~~~~~~~~~~~~da~~V~rL~~aGaii~GKtn~~Ef~~~~~~~-----n~~~G~~~NP~~~~~~~  155 (575)
                      ||+|+|+|++||+||+.|.+  . +++||++|++|+++|||++||||||||+++.+|+     |++||+|+||||++|+|
T Consensus        82 KD~~~v~g~~tt~Gs~~~~~--~-~~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~~~  158 (490)
T d1m22a_          82 KDNINAAPMATSAGSLALQG--F-RPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP  158 (490)
T ss_dssp             ETTBCCTTSCCCTTCGGGTT--C-CCCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred             EcccccCCCccCCcchhhcc--c-CCccchhhhhhhcccchhhcccccchhhhccccccccccccCCCCccCccccccCC
Confidence            99999999999999999974  3 3479999999999999999999999999988765     99999999999999999


Q ss_pred             CCCChHHHHHHHhcCCceeeccCCCCccccccccccceeeeCCCCCccCCCCCCCCCCCccccccccCHHHHHHHHHHHc
Q 008170          156 GGSSSGSAVAVAAQLVDFALGTDTIGCVRVPASFCGILGYRPSHGTVSMIGVLPNSQSLDTVGLLARNASILHRVGHVLL  235 (575)
Q Consensus       156 GGSSgGsaaaVAag~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~  235 (575)
                      |||||||||+||+|++++|||||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|+..+++++.
T Consensus       159 GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~vl~  238 (490)
T d1m22a_         159 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA  238 (490)
T ss_dssp             CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHhhhhccccccccCCccccceecceeEEeeccCccccCCcccccCcccCCCCccccchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCCcc---------------------cCceEEeccchhhhcCCCchHHHHHHHHHHHHHhCCCCCccccccchhhcc
Q 008170          236 QLNAVEPR---------------------RARRLIFADDIFQLSKVPKLKTIHVISKAIESLSGYQNPEHMNVGQYIASN  294 (575)
Q Consensus       236 ~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~l~g~~~~~~~~~~~~v~~~  294 (575)
                      +.+..++.                     ...++.+.....    ...+.+...+.++++.+...+.       ..++..
T Consensus       239 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~a~~~l~~~g~-------~v~ev~  307 (490)
T d1m22a_         239 GRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL----LKYRGMPPLIEQAATELRRAGA-------VVVPVE  307 (490)
T ss_dssp             CCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG----GGSTTHHHHHHHHHHHHHHTTC-------EEEEEC
T ss_pred             cccccCcccchhccccccchhhhcccccccccccccccccc----ccccchhhhhhhhHHHHhhccc-------ceeecc
Confidence            65432210                     011111111111    1134566677777777753322       111122


Q ss_pred             CcchHHhhhccCCCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHH---------------------HcCCCCCHHHHHHH
Q 008170          295 VPSLKGLRAQSTSPENGTATLKALSSVMLSLQRYEFKTIYEEWVK---------------------SAKPRLGYNVFERV  353 (575)
Q Consensus       295 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~---------------------~~~~~l~~~~~~~l  353 (575)
                      +|.+.....                 ....+...++...+..++.                     .....+.+.+..+.
T Consensus       308 ~p~~~~~~~-----------------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (490)
T d1m22a_         308 LPNQGAWAE-----------------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEA  370 (490)
T ss_dssp             CTTTTTTHH-----------------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHH
T ss_pred             CCchHHHHH-----------------HHHHHHHHHHHhhhhhHhhhcccccchHHHHHHHHHhhhhccccccchhhhHHH
Confidence            333221100                 0011111222222222222                     22233444444444


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHH--HHHHH--HhCCCCEEEecCCCCCCCcCCcccccchhhHhhhhccccccccCCCCcc
Q 008170          354 LEAINTTQDNIKILYKVRNEMR--AALQR--LLKDDKILVIPTVSDPPLKLNTKKTYSAEFHDRTLVLSSIGSMSGCCQV  429 (575)
Q Consensus       354 ~~~~~~s~~~~~~a~~~r~~~~--~~~~~--~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pai  429 (575)
                      ..........+..+++.++++.  ..++.  .|+++|+||+||++.++|.......       ....+|.++|++|+|++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~~-------~~~~~t~~~Nl~G~Pai  443 (490)
T d1m22a_         371 DATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDD-------FPGESYSAAAVAGYPSL  443 (490)
T ss_dssp             HTCCCTTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---C-------CTTCCHHHHHHHTCCEE
T ss_pred             HHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCCccCCcCccccc-------chHHHHHHHHHhCCCEE
Confidence            4334444444544443333322  23333  4679999999999988776543211       12356789999999999


Q ss_pred             cccccccCCCCcccccccccCCchhHHhHHHHHHHHhh
Q 008170          430 AIPIGKYNEHPISISFITYHGGDKFLLDTVLDLYDSLQ  467 (575)
Q Consensus       430 svP~G~~~GlPvGlqivg~~~~d~~ll~~a~~~~~~~~  467 (575)
                      |||+|+.+|||+||||||++++|..||++|+++|+...
T Consensus       444 svP~G~~~GLPvGlQlig~~~~D~~LL~~A~~lE~~~~  481 (490)
T d1m22a_         444 TVPMGQIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTR  481 (490)
T ss_dssp             EEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCCCCceeEEEECCCCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999998654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.2e-13  Score=112.11  Aligned_cols=87  Identities=36%  Similarity=0.390  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHH
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVD  564 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~  564 (575)
                      ++..++++|+.+++.|+|++|+..|+++|+++|+++.+|+++|.+|.++|++++|+.+|+++++++|++.   ..+|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            4677899999999999999999999999999999999999999999999999999999999999999988   4667777


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ..+++|..|+
T Consensus        82 ~~~~~~~~A~   91 (117)
T d1elwa_          82 EFLNRFEEAK   91 (117)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHccCHHHHH
Confidence            7778877765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3e-13  Score=119.65  Aligned_cols=92  Identities=35%  Similarity=0.593  Sum_probs=83.8

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HH
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---AR  559 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~  559 (575)
                      +++.+.++.++.+||.++++|+|++|+..|+++++++|+++.+|+++|.||+++|++++|+.+|+++|+++|++.   ..
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~   83 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence            344578899999999999999999999999999999999999999999999999999999999999999999988   45


Q ss_pred             HHHHHHHHHHhhhhh
Q 008170          560 VGYVDCSMLIYLLCI  574 (575)
Q Consensus       560 ~~~~~~~l~~~~~~i  574 (575)
                      +|.++..+|+|..|+
T Consensus        84 ~g~~~~~~g~~~eA~   98 (159)
T d1a17a_          84 RAASNMALGKFRAAL   98 (159)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            677788888888775

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-12  Score=110.74  Aligned_cols=85  Identities=29%  Similarity=0.450  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      +.+..++++|+.+++.|+|++|+.+|+++|+++|+++.+++|+|.||.++++|++|+.+|+++|+++|++.   ..++.+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999765   344444


Q ss_pred             HHHHHHhh
Q 008170          564 DCSMLIYL  571 (575)
Q Consensus       564 ~~~l~~~~  571 (575)
                      +..+|+..
T Consensus        82 ~~~lg~~~   89 (128)
T d1elra_          82 YARIGNSY   89 (128)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=8e-13  Score=120.96  Aligned_cols=86  Identities=35%  Similarity=0.515  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC  565 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~  565 (575)
                      ++.++++|+.++++|+|++|+..|+++|+++|+++.+|+|+|.||.++|+|++|+.+|+++++++|++.   ..+|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999999999999987   56778888


Q ss_pred             HHHHhhhhh
Q 008170          566 SMLIYLLCI  574 (575)
Q Consensus       566 ~l~~~~~~i  574 (575)
                      .+++|..|+
T Consensus        84 ~l~~~~~A~   92 (201)
T d2c2la1          84 EMESYDEAI   92 (201)
T ss_dssp             HTTCHHHHH
T ss_pred             HCCCHHHHH
Confidence            888888775

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=4.8e-11  Score=98.40  Aligned_cols=85  Identities=13%  Similarity=-0.049  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Q 008170          490 ELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCS  566 (575)
Q Consensus       490 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~  566 (575)
                      ..+++.|..++++|++++|+..|+++++++|+++.+|+++|.++.+++++++|+.+++++++++|++.   ..++.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999988   578888888


Q ss_pred             HHHhhhhh
Q 008170          567 MLIYLLCI  574 (575)
Q Consensus       567 l~~~~~~i  574 (575)
                      .|++..|+
T Consensus        97 ~g~~~~A~  104 (112)
T d1hxia_          97 EHNANAAL  104 (112)
T ss_dssp             HHHHHHHH
T ss_pred             CCCHHHHH
Confidence            89988876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.14  E-value=1.2e-10  Score=101.68  Aligned_cols=88  Identities=23%  Similarity=0.255  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----------------ATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----------------~~~~~~ra~~~~~l~~~~~Ai~~~~~al  550 (575)
                      +.+..++++|+.+|++|+|.+|+..|+++|++.+..                ..+|+|+|.||+++++|++|+.+|+++|
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            445566666777776677777776676666554321                2356666666666666766777666666


Q ss_pred             HhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          551 SLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       551 ~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      +++|++.   ..+|.++..+|+|..|+
T Consensus        95 ~~~p~~~ka~~~~g~~~~~lg~~~~A~  121 (153)
T d2fbna1          95 KIDKNNVKALYKLGVANMYFGFLEEAK  121 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             cccchhhhhhHHhHHHHHHcCCHHHHH
Confidence            6666665   34555555556665554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=7.2e-11  Score=111.99  Aligned_cols=90  Identities=18%  Similarity=0.086  Sum_probs=82.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      ++..+..++++|..|++.|+|++|++.|+++|+++|+++.+|+++|.+|.++|++++|+.+|+++++++|++.   ..+|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999977   4567


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++..+|++..|+
T Consensus       113 ~~~~~~g~~~~A~  125 (259)
T d1xnfa_         113 IALYYGGRDKLAQ  125 (259)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHHhhHHHHH
Confidence            7777778877664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.8e-10  Score=91.81  Aligned_cols=76  Identities=16%  Similarity=0.159  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVG  561 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~  561 (575)
                      ++..++.|+.++++|+|++|+..|++|+++.|.+       +.++.|+|.++.++|++++|+..++++|+++|++..++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678899999999999999999999999986543       789999999999999999999999999999999996555


Q ss_pred             HHH
Q 008170          562 YVD  564 (575)
Q Consensus       562 ~~~  564 (575)
                      .+.
T Consensus        85 Nl~   87 (95)
T d1tjca_          85 NLK   87 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.7e-10  Score=95.83  Aligned_cols=76  Identities=18%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      +|..+..|.++|.++++.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++...+
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  108 (117)
T d1elwa_          33 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK  108 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3677889999999999999999999999999999999999999999999999999999999999999999998533

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.7e-10  Score=102.65  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+.|.++++.|+|++|+..++++|+++|+++.+|+++|.||..+|+|++|+.+|+++++++|++.
T Consensus        66 ~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~  130 (170)
T d1p5qa1          66 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  130 (170)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            34444555555555555555555555555555555555555555555555555555555555444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.08  E-value=2.7e-10  Score=101.11  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=32.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .++|.++++.++|++|+..|+++++++|++..+|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus        68 ~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          68 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             HhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            34444444444444444444444444555555555555555555555555555555555554444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=6.1e-10  Score=98.83  Aligned_cols=73  Identities=22%  Similarity=0.272  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA  558 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~  558 (575)
                      +.....+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~  146 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA  146 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            5668889999999999999999999999999999999999999999999999999999999999999999984

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.7e-10  Score=102.56  Aligned_cols=86  Identities=13%  Similarity=0.092  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----------
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR-----------  557 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~-----------  557 (575)
                      +..|+++|.++++.|+|++|++.|++||+++|+++.+|+++|.+|.++|+|++|+.+|+++++..+.+.           
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            568999999999999999999999999999999999999999999999999999999999998765432           


Q ss_pred             --------HHHHHHHHHHHHhhhhh
Q 008170          558 --------ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       558 --------~~~~~~~~~l~~~~~~i  574 (575)
                              ..++.++..+++|..|+
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHH
Confidence                    24566666677776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=2e-09  Score=93.80  Aligned_cols=74  Identities=18%  Similarity=0.162  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGY  562 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~  562 (575)
                      ...+.++|.++++.|+|++|+..|+++|+++|++..+|+++|.+|..+|+|++|+.+|+++++++|++....-.
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~  140 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999854333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.1e-09  Score=94.21  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=71.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR  559 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~  559 (575)
                      +|.....|.++|.++++.|++++|+..|.++|+++|++..+|+++|.++..+|++++|+.+++++++++|++...
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~  114 (159)
T d1a17a_          40 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA  114 (159)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            366799999999999999999999999999999999999999999999999999999999999999999998843

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.3e-09  Score=94.13  Aligned_cols=60  Identities=12%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEE  544 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~  544 (575)
                      +|.....|..+|.++++.|+|++|+..|.++++++|++..+...++.++.++++..+...
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~  151 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  151 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            577889999999999999999999999999999999999999999999888877766543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.95  E-value=7.8e-10  Score=98.11  Aligned_cols=88  Identities=23%  Similarity=0.317  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL----------------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----------------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al  550 (575)
                      +.+..+++.|+.+++.|+|++|+..|+++|++                +|....++.|+|.||.++++|++|+.+|+++|
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            44667889999999999999999999999864                46677889999999999999999999999999


Q ss_pred             HhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          551 SLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       551 ~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      +++|++.   ..+|.++..+++|..|+
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~  131 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQAL  131 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHH
Confidence            9999998   46677777778887775

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.94  E-value=4e-09  Score=93.32  Aligned_cols=57  Identities=9%  Similarity=0.069  Sum_probs=48.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQ  541 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~  541 (575)
                      +|.....++.+|.+++..|+|++|+..|.++++++|++..++..++.+..+++++.+
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            567788888999999999999999999999999999998888888888877776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.6e-09  Score=98.28  Aligned_cols=85  Identities=22%  Similarity=0.279  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYV  563 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~  563 (575)
                      .++..++++|..++.+|+|++|++.|++   +.+.++.+|+|+|.+|.++|++++|+++|+++|+++|++.   ..+|.+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~   79 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            3466788999999999999999999986   4667899999999999999999999999999999999998   567777


Q ss_pred             HHHHHHhhhhh
Q 008170          564 DCSMLIYLLCI  574 (575)
Q Consensus       564 ~~~l~~~~~~i  574 (575)
                      +..+|+|..|+
T Consensus        80 ~~~~g~~~~A~   90 (192)
T d1hh8a_          80 YYQTEKYDLAI   90 (192)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHhhccHHHHH
Confidence            78888887775

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=1.2e-09  Score=99.15  Aligned_cols=72  Identities=19%  Similarity=0.181  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      |..+..|.++|.+|++.|+|++|+..|++||+++|+++.+|+++|.+|.++|+|++|+.+|+++++++|++.
T Consensus        35 p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            566899999999999999999999999999999999999999999999999999999999999999998644

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=4.1e-09  Score=90.81  Aligned_cols=88  Identities=10%  Similarity=0.080  Sum_probs=73.6

Q ss_pred             ChhHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHHH
Q 008170          485 SIDASELLKEKGNAAFK----------GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-----------FQQAE  543 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~----------~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-----------~~~Ai  543 (575)
                      +|+++..+.+.|.+++.          .+++++|+..|+++|+++|+++.+|+++|.+|..+++           |++|+
T Consensus        27 ~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~  106 (145)
T d1zu2a1          27 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT  106 (145)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhh
Confidence            47889999999999985          4556899999999999999999999999999988754           79999


Q ss_pred             HHHHHHHHhCcccHH---HHHHHHHHHHHhhh
Q 008170          544 EDCSKTISLDKKVRA---RVGYVDCSMLIYLL  572 (575)
Q Consensus       544 ~~~~~al~l~P~~~~---~~~~~~~~l~~~~~  572 (575)
                      +.|+++++++|++..   .++....+.+.|..
T Consensus       107 ~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1         107 QFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             hhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999883   44555555555544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.77  E-value=9.4e-09  Score=89.61  Aligned_cols=87  Identities=13%  Similarity=0.061  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          488 ASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS------------ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       488 ~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------------~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      .+..++..|+.+++.|+|++|+..|+++|+++|+.            +.+|+|+|.+|.++|+|++|+.++++++++.|+
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            34556667999999999999999999999998764            468999999999999999999999999988653


Q ss_pred             c--------------HHHHHHHHHHHHHhhhhh
Q 008170          556 V--------------RARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       556 ~--------------~~~~~~~~~~l~~~~~~i  574 (575)
                      .              ...+|.++..+|+|..|+
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~  120 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAM  120 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHH
Confidence            1              145678888888888775

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8.5e-09  Score=101.08  Aligned_cols=90  Identities=11%  Similarity=0.000  Sum_probs=73.2

Q ss_pred             ChhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HH
Q 008170          485 SIDASELLKEKGNAAFKGK-QWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RV  560 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~  560 (575)
                      +|++..+|.++|..+.+.+ ++++|+..|+++++++|++..+|++||.++.++|++++|+.+++++++++|++..   .+
T Consensus        73 nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~  152 (315)
T d2h6fa1          73 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR  152 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHH
Confidence            4677888888888888865 4888888888888888888888888888888888888888888888888888873   45


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      |.++..+++|..|+
T Consensus       153 ~~~~~~~~~~~~Al  166 (315)
T d2h6fa1         153 QWVIQEFKLWDNEL  166 (315)
T ss_dssp             HHHHHHHTCCTTHH
T ss_pred             HHHHHHHHhhHHHH
Confidence            66666666666654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2e-08  Score=98.38  Aligned_cols=90  Identities=12%  Similarity=-0.004  Sum_probs=82.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccH---HHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC-FQQAEEDCSKTISLDKKVR---ARV  560 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~-~~~Ai~~~~~al~l~P~~~---~~~  560 (575)
                      +|+..+++...|..+.+++.+++|++.|+++|+++|++..+|++||.++.++++ +++|+.+++++++++|++.   ..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            688899999999999999999999999999999999999999999999999875 9999999999999999988   456


Q ss_pred             HHHHHHHHHhhhhh
Q 008170          561 GYVDCSMLIYLLCI  574 (575)
Q Consensus       561 ~~~~~~l~~~~~~i  574 (575)
                      |.++..++++..||
T Consensus       119 ~~~~~~l~~~~eAl  132 (315)
T d2h6fa1         119 RVLVEWLRDPSQEL  132 (315)
T ss_dssp             HHHHHHHTCCTTHH
T ss_pred             hHHHHhhccHHHHH
Confidence            77777777877765

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.7e-08  Score=83.90  Aligned_cols=78  Identities=9%  Similarity=0.019  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          486 IDASELLKEKGNAAFKGK---QWNKAVNYYSEAIKLNGTS--ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~p~~--~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      |.....+++.|..+++.+   ++++|+..|+++++.+|++  ..+++++|.+|.++|+|++|+++|+++|+++|++..++
T Consensus        30 p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~  109 (122)
T d1nzna_          30 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  109 (122)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence            566889999999998755   4567999999999998765  56899999999999999999999999999999998654


Q ss_pred             HHH
Q 008170          561 GYV  563 (575)
Q Consensus       561 ~~~  563 (575)
                      ...
T Consensus       110 ~l~  112 (122)
T d1nzna_         110 ELE  112 (122)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.5e-08  Score=97.19  Aligned_cols=83  Identities=10%  Similarity=0.001  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHH
Q 008170          492 LKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDCSML  568 (575)
Q Consensus       492 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~~l~  568 (575)
                      .+++|..++++|+|++|+..|+++++.+|+++.+|+++|.++..+|++++|+..++++++++|++..   .++.++..++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999883   4556666666


Q ss_pred             Hhhhhh
Q 008170          569 IYLLCI  574 (575)
Q Consensus       569 ~~~~~i  574 (575)
                      ++..|+
T Consensus       102 ~~~~A~  107 (323)
T d1fcha_         102 LQRQAC  107 (323)
T ss_dssp             CHHHHH
T ss_pred             cccccc
Confidence            666554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.8e-08  Score=92.62  Aligned_cols=74  Identities=19%  Similarity=0.112  Sum_probs=70.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRAR  559 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~  559 (575)
                      |+.+..|.++|.++.+.|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..++++++++|++...
T Consensus        68 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  141 (259)
T d1xnfa_          68 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR  141 (259)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHH
Confidence            55688999999999999999999999999999999999999999999999999999999999999999988743

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.2e-08  Score=95.59  Aligned_cols=86  Identities=10%  Similarity=0.092  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDC  565 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~  565 (575)
                      +..+...|..+...|++++|+..|+++++.+|+++.+|+++|.++.++|++++|+..|+++++++|++.   ..+|.++.
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  251 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  251 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            566777888888888888888888888888888888888888888888888888888888888888877   35666777


Q ss_pred             HHHHhhhhh
Q 008170          566 SMLIYLLCI  574 (575)
Q Consensus       566 ~l~~~~~~i  574 (575)
                      .+|+|..||
T Consensus       252 ~~g~~~~A~  260 (323)
T d1fcha_         252 NLGAHREAV  260 (323)
T ss_dssp             HHTCHHHHH
T ss_pred             HCCCHHHHH
Confidence            777777665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.66  E-value=2.5e-08  Score=81.55  Aligned_cols=65  Identities=11%  Similarity=-0.036  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTI  550 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al  550 (575)
                      |+.+..|..+|..+.+.+++++|+..|+++++++|++..+|+++|.+|..+|++++|++.+++.|
T Consensus        47 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          47 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            56789999999999999999999999999999999999999999999999999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.3e-08  Score=98.86  Aligned_cols=81  Identities=7%  Similarity=0.014  Sum_probs=53.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHHHHHHHHHHh
Q 008170          494 EKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVGYVDCSMLIY  570 (575)
Q Consensus       494 ~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~~~~~~l~~~  570 (575)
                      ++|+.+++.|+|++|++.|+++++.+|+++.+++++|.+|.++|++++|+..++++++++|++.   ..++.++..+|+|
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence            4566666777777777777777777777777777777777777777777777777777776665   3445555555665


Q ss_pred             hhhh
Q 008170          571 LLCI  574 (575)
Q Consensus       571 ~~~i  574 (575)
                      ..|+
T Consensus        84 ~~A~   87 (388)
T d1w3ba_          84 QEAI   87 (388)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            5543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.9e-08  Score=96.45  Aligned_cols=82  Identities=17%  Similarity=0.160  Sum_probs=73.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDC  565 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~  565 (575)
                      |.....+...+..+++.|+|++|+..|+++++++|+++.+++++|.+|.++|++++|+..|+++++++|++...+..++.
T Consensus       302 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~  381 (388)
T d1w3ba_         302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN  381 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45577888999999999999999999999999999999999999999999999999999999999999999865554444


Q ss_pred             HH
Q 008170          566 SM  567 (575)
Q Consensus       566 ~l  567 (575)
                      .+
T Consensus       382 ~~  383 (388)
T d1w3ba_         382 TL  383 (388)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.6e-08  Score=84.03  Aligned_cols=82  Identities=7%  Similarity=-0.069  Sum_probs=71.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccH-----HHHHHHH
Q 008170          493 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELG---CFQQAEEDCSKTISLDKKVR-----ARVGYVD  564 (575)
Q Consensus       493 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~---~~~~Ai~~~~~al~l~P~~~-----~~~~~~~  564 (575)
                      .+..|.+...++|++|.+.|+++++++|+++.+++|+|.|+++.+   ++++|+..++++++.+|++.     ..+|.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999998754   55679999999999987653     4688888


Q ss_pred             HHHHHhhhhh
Q 008170          565 CSMLIYLLCI  574 (575)
Q Consensus       565 ~~l~~~~~~i  574 (575)
                      ..+|+|..|+
T Consensus        83 ~~~g~~~~A~   92 (122)
T d1nzna_          83 YRLKEYEKAL   92 (122)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHHhhhHHHH
Confidence            8889998876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.53  E-value=7.6e-08  Score=82.59  Aligned_cols=72  Identities=18%  Similarity=0.123  Sum_probs=59.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCcccHHHH---HHHH
Q 008170          498 AAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL----------GCFQQAEEDCSKTISLDKKVRARV---GYVD  564 (575)
Q Consensus       498 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l----------~~~~~Ai~~~~~al~l~P~~~~~~---~~~~  564 (575)
                      .+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +++++|+..|+++++++|++...+   |.++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            455677799999999999999999999999999999854          556899999999999999998544   4444


Q ss_pred             HHHHH
Q 008170          565 CSMLI  569 (575)
Q Consensus       565 ~~l~~  569 (575)
                      ..+++
T Consensus        86 ~~~g~   90 (145)
T d1zu2a1          86 TSFAF   90 (145)
T ss_dssp             HHHHH
T ss_pred             HHccc
Confidence            44443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.8e-07  Score=74.58  Aligned_cols=71  Identities=13%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSA-------TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-------~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      |++...+.++|.++++.|+|++|+..|+++|+++|++.       .+|+++|.++..++++++|+.+|++++..+++.
T Consensus        35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            56688999999999999999999999999999998763       578888899999999999999999999998753

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.34  E-value=7.8e-07  Score=84.08  Aligned_cols=78  Identities=19%  Similarity=0.099  Sum_probs=67.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---HHHHHHHHHHHhh
Q 008170          495 KGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRA---RVGYVDCSMLIYL  571 (575)
Q Consensus       495 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~~~l~~~~  571 (575)
                      ++..++++|++++|+..|+++++.+|+++.++.+++.+|...|++++|+..++++++++|++..   .++.+....+...
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            3567889999999999999999999999999999999999999999999999999999999883   3444455544443


Q ss_pred             h
Q 008170          572 L  572 (575)
Q Consensus       572 ~  572 (575)
                      .
T Consensus        82 ~   82 (264)
T d1zbpa1          82 D   82 (264)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=8.9e-07  Score=78.55  Aligned_cols=90  Identities=10%  Similarity=-0.074  Sum_probs=69.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS----------------------ATYYSNRAAAYLELGCFQQA  542 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----------------------~~~~~~ra~~~~~l~~~~~A  542 (575)
                      +....+.+.+.|+.+...|++++|++.|++|+++.+.+                      ..++.+++.++.++|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            34567788889999999999999999999999886533                      25688899999999999999


Q ss_pred             HHHHHHHHHhCcccH---HHHHHHHHHHHHhhhhh
Q 008170          543 EEDCSKTISLDKKVR---ARVGYVDCSMLIYLLCI  574 (575)
Q Consensus       543 i~~~~~al~l~P~~~---~~~~~~~~~l~~~~~~i  574 (575)
                      +.+++++++++|.+.   ..++.++..+|++..|+
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl  121 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL  121 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHH
Confidence            999999999999877   34555555555555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.31  E-value=7.5e-07  Score=77.09  Aligned_cols=73  Identities=14%  Similarity=0.024  Sum_probs=64.0

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGT-----------SATYYSNRAAAYLELGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-----------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~  553 (575)
                      .+..+..|.+.|.++++.|+|++|+..|+++|++.|+           ...+++++|.+|.++|++++|+.+|++++++.
T Consensus        51 ~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          51 AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456788999999999999999999999999987542           24579999999999999999999999999998


Q ss_pred             cccH
Q 008170          554 KKVR  557 (575)
Q Consensus       554 P~~~  557 (575)
                      |+..
T Consensus       131 ~~~~  134 (156)
T d2hr2a1         131 EERK  134 (156)
T ss_dssp             HHCC
T ss_pred             HHhh
Confidence            7644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.4e-06  Score=86.58  Aligned_cols=81  Identities=17%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARVGYVDCSML  568 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~~~~~~~l~  568 (575)
                      ...+.++|..+...++|++|+.+|.+|++++|++...|+++|.++...|++.+|+.+|.|+|.++|.++.++..+...+.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999977777665544


Q ss_pred             H
Q 008170          569 I  569 (575)
Q Consensus       569 ~  569 (575)
                      +
T Consensus       232 ~  232 (497)
T d1ya0a1         232 K  232 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=3.5e-05  Score=62.43  Aligned_cols=72  Identities=8%  Similarity=0.009  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Q 008170          489 SELLKEKGNAAFKGKQ---WNKAVNYYSEAIKLNGTSA-TYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVRARV  560 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~-~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~~~~  560 (575)
                      .+.-++.|-.+.+..+   .+++|..++++++.+|.+. .+++++|.+|+++|+|++|...++++|+++|+|..++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            5677888888887655   4699999999999998774 7999999999999999999999999999999998643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=1.2e-05  Score=70.98  Aligned_cols=69  Identities=10%  Similarity=0.030  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCcc
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKT-------ISLDKK  555 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~a-------l~l~P~  555 (575)
                      .....+.+++..+.+.|+|++|+..++++++++|.+..+|.+++.+|.++|++.+|++.|+++       +.++|.
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            456788899999999999999999999999999999999999999999999999999999998       446775

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.7e-05  Score=61.92  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLEL  536 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l  536 (575)
                      .+..+..|.++|+++++.|+|++|+..|+++|+++|++..+++|++.+...+
T Consensus        42 ~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          42 TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            3567889999999999999999999999999999999999999998776544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=4.7e-05  Score=73.08  Aligned_cols=70  Identities=10%  Similarity=-0.030  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      ...++...-++..++.+|++++|+..|+++++..|++     ..++.++|.+|..+|++++|+..+++++++.+.
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            3456667778999999999999999999999999876     458899999999999999999999999988664

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.1e-05  Score=81.23  Aligned_cols=88  Identities=13%  Similarity=-0.066  Sum_probs=51.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---HHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR---ARVG  561 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~~~~  561 (575)
                      +++....+.+.|..+.+.+++++|+..|.++++++|  ..++.++|.++..+++|++|+.+|++|++++|++.   ..+|
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg  193 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA  193 (497)
T ss_dssp             ---------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            356778899999999999999999999999999876  46889999999999999999999999999999987   4566


Q ss_pred             HHHHHHHHhhhhh
Q 008170          562 YVDCSMLIYLLCI  574 (575)
Q Consensus       562 ~~~~~l~~~~~~i  574 (575)
                      .++...+++..|+
T Consensus       194 ~~~~~~~~~~~A~  206 (497)
T d1ya0a1         194 ILASSKGDHLTTI  206 (497)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHH
Confidence            6665566666554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=2.9e-05  Score=74.02  Aligned_cols=71  Identities=14%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          486 IDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLN------GTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       486 ~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~------p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      .+.++.|.+.|+.+..+++|++|+++|.+|+++.      ++.+..|.+.|.||.+++++++|++.+++++++.++.
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~  110 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR  110 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc
Confidence            4457789999999999999999999999999983      2336789999999999999999999999999886654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=6.1e-05  Score=71.66  Aligned_cols=67  Identities=21%  Similarity=0.129  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Q 008170          491 LLKEKGNAAFK-GKQWNKAVNYYSEAIKLNGT------SATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       491 ~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p~------~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      .+.+.|..+.. .++|++|++.|++++++.+.      ...++.++|.++.++|+|++|+..|+++++..+++.
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            33444444433 25555555555555544321      133455555555555555555555555555555554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=6.7e-05  Score=72.75  Aligned_cols=90  Identities=4%  Similarity=-0.110  Sum_probs=75.6

Q ss_pred             ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---H
Q 008170          485 SIDASELLKEKGNAAFKGK--QWNKAVNYYSEAIKLNGTSATYY-SNRAAAYLELGCFQQAEEDCSKTISLDKKVR---A  558 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~-~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~~---~  558 (575)
                      +|+....|..+|..+...+  ++++|+..+.++++++|++..++ ..++.++...+++++|+..++++++++|++.   .
T Consensus       103 ~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~  182 (334)
T d1dcea1         103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH  182 (334)
T ss_dssp             CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence            3677888999998887665  58999999999999999998875 5778899999999999999999999999988   4


Q ss_pred             HHHHHHHHHHHhhhhh
Q 008170          559 RVGYVDCSMLIYLLCI  574 (575)
Q Consensus       559 ~~~~~~~~l~~~~~~i  574 (575)
                      .++.++..+++|..|+
T Consensus       183 ~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         183 YRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             HHHHHHHHHSCCCCSS
T ss_pred             HHHHHHHHhcCHHHHH
Confidence            5677777777776554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.00014  Score=70.31  Aligned_cols=73  Identities=12%  Similarity=0.158  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC
Q 008170          486 IDASELLKEKGNA----------AFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGC--FQQAEEDCSKTISLD  553 (575)
Q Consensus       486 ~~~a~~~~~~g~~----------~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~--~~~Ai~~~~~al~l~  553 (575)
                      |+....|..++..          +...+++++|+.+|+++++.+|++..+|++++.++..+++  +++|+..++++++++
T Consensus        60 P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  139 (334)
T d1dcea1          60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD  139 (334)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC
Confidence            4555555555544          4445568999999999999999999999999999998875  899999999999999


Q ss_pred             cccHH
Q 008170          554 KKVRA  558 (575)
Q Consensus       554 P~~~~  558 (575)
                      |++..
T Consensus       140 ~~~~~  144 (334)
T d1dcea1         140 ERNFH  144 (334)
T ss_dssp             TTCHH
T ss_pred             chhhh
Confidence            99874

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00085  Score=63.79  Aligned_cols=72  Identities=10%  Similarity=-0.031  Sum_probs=62.7

Q ss_pred             CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Q 008170          484 GSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL------NGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKK  555 (575)
Q Consensus       484 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~  555 (575)
                      ..+.....+.+.|..++..|++++|+..+++++..      .|....++.++|.+|.++|++++|++.+++++++.+.
T Consensus       246 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            34566777888999999999999999999999855      3556789999999999999999999999999998653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.60  E-value=0.00054  Score=63.92  Aligned_cols=64  Identities=11%  Similarity=-0.055  Sum_probs=51.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008170          485 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSK  548 (575)
Q Consensus       485 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~  548 (575)
                      +|++...+.+++..+...|+|++|+..|+++++++|++..++.+++.++...++.+++...+.+
T Consensus        26 ~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~   89 (264)
T d1zbpa1          26 SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT   89 (264)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence            4788999999999999999999999999999999998877777777776665555555544433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.33  E-value=0.0065  Score=55.80  Aligned_cols=63  Identities=21%  Similarity=0.298  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~  553 (575)
                      ++.++++|..++++++|++|+++|++|.+.  .++.+++++|.+|..    .+++.+|...++++.+.+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc
Confidence            568999999999999999999999999876  589999999999998    679999999999988764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.60  E-value=0.018  Score=54.23  Aligned_cols=69  Identities=9%  Similarity=0.017  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Q 008170          488 ASELLKEKGNAAF-KGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKV  556 (575)
Q Consensus       488 ~a~~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~l~~~~~Ai~~~~~al~l~P~~  556 (575)
                      ....+...+.... ..++.+.|...|+++++..|++..+|...+....+.|++++|...|+++++..|.+
T Consensus       167 ~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            3456667776554 46899999999999999999999999999999999999999999999999987654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.021  Score=45.51  Aligned_cols=49  Identities=10%  Similarity=0.017  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE  535 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~  535 (575)
                      ...+.|+..|..+++.|+|++|..+++++|+++|++..+...+-.+..+
T Consensus        71 ~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~  119 (124)
T d2pqrb1          71 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK  119 (124)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence            3468999999999999999999999999999999999887776665443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.08  E-value=0.03  Score=52.53  Aligned_cols=83  Identities=7%  Similarity=-0.188  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHH---HHHHHH
Q 008170          489 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE-LGCFQQAEEDCSKTISLDKKVRA---RVGYVD  564 (575)
Q Consensus       489 a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~-l~~~~~Ai~~~~~al~l~P~~~~---~~~~~~  564 (575)
                      ...|...++...+.++++.|.+.|.++++..|.+...|.+.+..... .++.+.|...|+++++.+|++..   .++.+.
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            34566777777778888888888888888888887777777766544 46778888888888888777662   344444


Q ss_pred             HHHHHhh
Q 008170          565 CSMLIYL  571 (575)
Q Consensus       565 ~~l~~~~  571 (575)
                      ...|++.
T Consensus       214 ~~~g~~~  220 (308)
T d2onda1         214 SHLNEDN  220 (308)
T ss_dssp             HTTCCHH
T ss_pred             HHcCChH
Confidence            4444433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=94.29  E-value=0.047  Score=49.61  Aligned_cols=68  Identities=25%  Similarity=0.149  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcccH
Q 008170          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDKKVR  557 (575)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P~~~  557 (575)
                      +..++.+.|..++.    .+++++|+..|+++.+.  .++.+++++|.+|.+    .+++++|++.|+++.++.....
T Consensus       177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A  252 (265)
T d1ouva_         177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  252 (265)
T ss_dssp             CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHH
Confidence            36788899999987    78999999999999988  478999999999987    4589999999999999876543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.22  E-value=0.13  Score=41.38  Aligned_cols=65  Identities=20%  Similarity=0.100  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Q 008170          488 ASELLKEKGNAAFK----GKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLDK  554 (575)
Q Consensus       488 ~a~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~P  554 (575)
                      ++......|..++.    ..++++|++.|+++.+.  .++.+.+++|.+|..    .+++++|++.|+++.++..
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            35677888988886    67899999999999876  578899999999988    5689999999999998753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=88.95  E-value=0.99  Score=35.70  Aligned_cols=52  Identities=21%  Similarity=0.135  Sum_probs=45.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008170          500 FKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLE----LGCFQQAEEDCSKTISLD  553 (575)
Q Consensus       500 ~~~g~~~~Ai~~~~~al~~~p~~~~~~~~ra~~~~~----l~~~~~Ai~~~~~al~l~  553 (575)
                      ....++++|+..|+++.+.  .++.+.+++|..|..    ..++++|++.|+++.+..
T Consensus        34 ~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g   89 (133)
T d1klxa_          34 NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN   89 (133)
T ss_dssp             CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC
Confidence            3467899999999999876  689999999999987    568999999999999874

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.15  E-value=0.83  Score=33.94  Aligned_cols=36  Identities=14%  Similarity=0.238  Sum_probs=31.3

Q ss_pred             CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          483 NGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (575)
Q Consensus       483 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~  518 (575)
                      +.....+..+..++..+-+.|+|++|+.+|.+++++
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344567888999999999999999999999999865

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.41  E-value=1  Score=32.02  Aligned_cols=32  Identities=6%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008170          487 DASELLKEKGNAAFKGKQWNKAVNYYSEAIKL  518 (575)
Q Consensus       487 ~~a~~~~~~g~~~~~~g~~~~Ai~~~~~al~~  518 (575)
                      +.+..+-.++..+.+.|+|++||+++.+|...
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~y   37 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATTY   37 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            55667788999999999999999999887753