Citrus Sinensis ID: 009116

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDESSTPKSFIVPLLGNGQGSEADLKTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPGSPLEQSVHQWQQE
ccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccHHHHHHHHHHHHHccccccccccccHHHHHHHEEEEHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccccc
ccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHEEEEccccccEEEEEcccEEEEEccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHEEHHHHHHHHHHHHHHHHHHcccccccccHccEEEEEHEEHHHHHHHHHHHccHHHHHHHccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEEcccccHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccc
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLttngtsshvLMFSEDlffiyllppiifnagFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFkqmnigtlkigdyLAIGAIFAATDSVCTlqvlnqdetpllYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGmdaldiekwrvvrdspgksvgVSAILLGLVLLGRAafvfplsflsnltkksshekiglKQQLTIWWAGLMRGAVSMALAYKQftssghtklhgnAIMITSTITVVLFSTVVFGLMTQPLVRILLpssknlsrmlsdesstpksfivpllgngqgseadlktpnvtrptslrmllatpshtvhHYWRkfddafmrpvfggrgfvpvvpgspleqSVHQWQQE
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDESSTPKSFIVPLLgngqgseadlktpnVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPGSPLEQSVHQWQQE
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDESSTPKSFIVPLLGNGQGSEADLKTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMrpvfggrgfvpvvpgspLEQSVHQWQQE
**********************VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILL*********************************************LRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVP**************
******************DHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRIL****************************************************TPSHTVHHYWRKFDDAFMRPVFGGRGFV******************
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLS**********KSFIVPLLGNGQGSEADLKTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPGSPL**********
*****SNL***SLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSS*************PKSFIVPLLGNGQGSEA*LKTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPG*************
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDESSTPKSFIVPLLGNGQGSEADLKTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPGSPLEQSVHQWQQE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query543 2.2.26 [Sep-21-2011]
Q56XP4546 Sodium/hydrogen exchanger yes no 0.987 0.981 0.750 0.0
Q68KI4538 Sodium/hydrogen exchanger no no 0.976 0.985 0.731 0.0
Q84WG1503 Sodium/hydrogen exchanger no no 0.926 1.0 0.761 0.0
Q8S397529 Sodium/hydrogen exchanger no no 0.939 0.964 0.578 1e-171
Q5ZJ75574 Sodium/hydrogen exchanger yes no 0.758 0.717 0.34 4e-54
Q8R4D1576 Sodium/hydrogen exchanger yes no 0.788 0.743 0.329 6e-54
Q4L208575 Sodium/hydrogen exchanger yes no 0.784 0.740 0.330 6e-54
Q552S0674 Sodium/hydrogen exchanger yes no 0.784 0.632 0.309 2e-53
Q9Y2E8581 Sodium/hydrogen exchanger yes no 0.731 0.683 0.337 8e-53
Q92581669 Sodium/hydrogen exchanger no no 0.738 0.599 0.323 4e-47
>sp|Q56XP4|NHX2_ARATH Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2 Back     alignment and function desciption
 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/542 (75%), Positives = 465/542 (85%), Gaps = 6/542 (1%)

Query: 6   SNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIV 65
           ++L  + LS+ +SDH SVVS+NLFVALLCACIVIGHLLEENRWMNESITAL+IGL TG+V
Sbjct: 5   ASLTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVV 64

Query: 66  ILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125
           ILL + G +SH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TIM FGA+GT++S 
Sbjct: 65  ILLISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSC 124

Query: 126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV 185
            IIS GA+ FFK+++IGT  +GD+LAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV
Sbjct: 125 TIISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV 184

Query: 186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYM 245
           VNDATSVVLFNAIQSFDL+H+N   A +F+G+FFYLF+ ST LGV  GL+SA++IKKLY 
Sbjct: 185 VNDATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYF 244

Query: 246 GRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHA 305
           GRHSTDREVALM+LMAYLSYMLAELF LSGILTVFFCGIVMSHYTWHNVTESSR+TTKHA
Sbjct: 245 GRHSTDREVALMMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTKHA 304

Query: 306 FATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSF 365
           FATLSF+AE FIFLYVGMDALDIEKWR V DSPG SV VS+IL+GLV+LGRAAFVFPLSF
Sbjct: 305 FATLSFLAETFIFLYVGMDALDIEKWRFVSDSPGTSVAVSSILMGLVMLGRAAFVFPLSF 364

Query: 366 LSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTIT 425
           LSNL KK   EKI +KQQ+ IWWAGLMRGAVSMALAY +FT SGHT+L GNAIMITSTIT
Sbjct: 365 LSNLAKKHQSEKISIKQQVVIWWAGLMRGAVSMALAYNKFTRSGHTELRGNAIMITSTIT 424

Query: 426 VVLFSTVVFGLMTQPLVRILLPSSK---NLSRMLSDESSTPKSFIVPLLGNGQGSEADL- 481
           V LFST+VFG++T+PL+R L+P  K   + + MLSD+ STPKS  +PLL   Q    +L 
Sbjct: 425 VCLFSTMVFGMLTKPLIRYLMPHQKATTSTTSMLSDD-STPKSIHIPLLDGEQLDSFELP 483

Query: 482 -KTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPGSPLEQSVHQW 540
               +V RP SLR  L  P+ TVH+YWR+FDDAFMRPVFGGRGFVP VPGSP E+S H  
Sbjct: 484 GSHQDVPRPNSLRGFLMRPTRTVHYYWRQFDDAFMRPVFGGRGFVPFVPGSPTERSSHDL 543

Query: 541 QQ 542
            +
Sbjct: 544 SK 545
Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.
Arabidopsis thaliana (taxid: 3702)
>sp|Q68KI4|NHX1_ARATH Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2 Back     alignment and function description
>sp|Q84WG1|NHX3_ARATH Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2 Back     alignment and function description
>sp|Q8S397|NHX4_ARATH Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2 Back     alignment and function description
>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q552S0|NHE1_DICDI Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4 Back     alignment and function description
>sp|Q92581|SL9A6_HUMAN Sodium/hydrogen exchanger 6 OS=Homo sapiens GN=SLC9A6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
225432394541 PREDICTED: sodium/hydrogen exchanger 2 [ 0.996 1.0 0.822 0.0
224110480526 sodium proton exchanger [Populus trichoc 0.968 1.0 0.846 0.0
255317075536 Na+/H+ exchanger 4 [Populus euphratica] 0.987 1.0 0.826 0.0
54645913541 nhx1 antiporter [Vitis vinifera] 0.996 1.0 0.805 0.0
157057198550 Na+/H+ antiporter [Chrysanthemum x morif 0.977 0.965 0.795 0.0
119960473549 antiporter protein [Helianthus tuberosus 0.983 0.972 0.791 0.0
224130824544 sodium proton exchanger [Populus trichoc 0.996 0.994 0.794 0.0
255551633541 sodium/hydrogen exchanger, putative [Ric 0.994 0.998 0.806 0.0
14211574540 Na H-antiportor [Petunia x hybrida] 0.981 0.987 0.803 0.0
359487875539 PREDICTED: sodium/hydrogen exchanger 2-l 0.992 1.0 0.784 0.0
>gi|225432394|ref|XP_002277061.1| PREDICTED: sodium/hydrogen exchanger 2 [Vitis vinifera] gi|147792256|emb|CAN61480.1| hypothetical protein VITISV_010931 [Vitis vinifera] gi|297736919|emb|CBI26120.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/541 (82%), Positives = 492/541 (90%)

Query: 1   MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGL 60
           M  EL +++ +   + +SDH SVVSMNLFVALLCACIV+GHLLEE RWMNESITAL +GL
Sbjct: 1   MGFELGSVVMKLGMVSTSDHSSVVSMNLFVALLCACIVVGHLLEEYRWMNESITALALGL 60

Query: 61  CTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120
           CTGI+ILLTT G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGA+G
Sbjct: 61  CTGIIILLTTRGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIG 120

Query: 121 TLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLV 180
           TLISF IIS GA+HFFK+M IG+L IGDYLA+GAIF+ATDSVCTLQVLNQDETPLLYSLV
Sbjct: 121 TLISFGIISLGAIHFFKKMKIGSLDIGDYLALGAIFSATDSVCTLQVLNQDETPLLYSLV 180

Query: 181 FGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
           FGEGVVNDATSVVLFNAIQSFDLSHI+ SIAL+F+G+F YLFI STMLGV AGLLSA+II
Sbjct: 181 FGEGVVNDATSVVLFNAIQSFDLSHIDSSIALQFIGNFLYLFITSTMLGVFAGLLSAYII 240

Query: 241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
           KKLY GRHSTDREVA+MILMAYLSYMLAELFYLS ILTVFFCGIVMSHYTWHNVTESSRV
Sbjct: 241 KKLYFGRHSTDREVAIMILMAYLSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRV 300

Query: 301 TTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFV 360
           TTKHAFATLSFVAEIFIFLYVGMDALDIEKWR V DSPGKS+GVS+ILLGLVL+GRAAFV
Sbjct: 301 TTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSDSPGKSIGVSSILLGLVLVGRAAFV 360

Query: 361 FPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMI 420
           FPLSFLSNLTKKSS EKI +KQQ+TIWWAGLMRGAVSMALAY QFT +GHT+L GNAIMI
Sbjct: 361 FPLSFLSNLTKKSSSEKIHIKQQVTIWWAGLMRGAVSMALAYNQFTRAGHTQLRGNAIMI 420

Query: 421 TSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDESSTPKSFIVPLLGNGQGSEAD 480
           TSTI+VVLFSTVVFGLMT+PLVR+LLPS K  + M+S E S+PK  +VPL+GNG+ +E D
Sbjct: 421 TSTISVVLFSTVVFGLMTKPLVRLLLPSPKPFTSMISSEPSSPKYLVVPLIGNGEETETD 480

Query: 481 LKTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPGSPLEQSVHQW 540
             + NV RPTSLRMLL+TPSHTVHHYWRKFDD+FMRPVFGGRGF P +PGSP E ++ QW
Sbjct: 481 QASQNVPRPTSLRMLLSTPSHTVHHYWRKFDDSFMRPVFGGRGFTPFIPGSPTEPNLGQW 540

Query: 541 Q 541
           +
Sbjct: 541 R 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224110480|ref|XP_002315532.1| sodium proton exchanger [Populus trichocarpa] gi|222864572|gb|EEF01703.1| sodium proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255317075|gb|ACU01855.1| Na+/H+ exchanger 4 [Populus euphratica] Back     alignment and taxonomy information
>gi|54645913|gb|AAV36562.1| nhx1 antiporter [Vitis vinifera] Back     alignment and taxonomy information
>gi|157057198|gb|ABN71591.2| Na+/H+ antiporter [Chrysanthemum x morifolium] Back     alignment and taxonomy information
>gi|119960473|gb|ABM17091.1| antiporter protein [Helianthus tuberosus] Back     alignment and taxonomy information
>gi|224130824|ref|XP_002328385.1| sodium proton exchanger [Populus trichocarpa] gi|222838100|gb|EEE76465.1| sodium proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255551633|ref|XP_002516862.1| sodium/hydrogen exchanger, putative [Ricinus communis] gi|223543950|gb|EEF45476.1| sodium/hydrogen exchanger, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|14211574|dbj|BAB56105.1| Na H-antiportor [Petunia x hybrida] Back     alignment and taxonomy information
>gi|359487875|ref|XP_002266345.2| PREDICTED: sodium/hydrogen exchanger 2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
TAIR|locus:2114810546 NHX2 "sodium hydrogen exchange 0.937 0.932 0.753 1.1e-204
TAIR|locus:2181246538 NHX1 "Na+/H+ exchanger 1" [Ara 0.937 0.946 0.727 2e-198
TAIR|locus:2081111503 NHX4 "sodium hydrogen exchange 0.926 1.0 0.761 8.7e-198
TAIR|locus:2173972529 NHX3 "AT5G55470" [Arabidopsis 0.928 0.952 0.577 2.2e-153
FB|FBgn0026787649 Nhe1 "Na[+]/H[+] hydrogen exch 0.775 0.648 0.348 1e-59
UNIPROTKB|Q5ZJ75574 Q5ZJ75 "Sodium/hydrogen exchan 0.762 0.721 0.341 4.6e-57
MGI|MGI:1924281576 Slc9a8 "solute carrier family 0.738 0.696 0.345 4.6e-57
RGD|1308193575 Slc9a8 "solute carrier family 0.738 0.697 0.345 5.9e-57
UNIPROTKB|Q4L208575 Slc9a8 "Sodium/hydrogen exchan 0.738 0.697 0.345 5.9e-57
UNIPROTKB|E2R7C3581 SLC9A8 "Sodium/hydrogen exchan 0.736 0.688 0.344 1.2e-56
TAIR|locus:2114810 NHX2 "sodium hydrogen exchanger 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1980 (702.1 bits), Expect = 1.1e-204, P = 1.1e-204
 Identities = 388/515 (75%), Positives = 444/515 (86%)

Query:     6 SNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIV 65
             ++L  + LS+ +SDH SVVS+NLFVALLCACIVIGHLLEENRWMNESITAL+IGL TG+V
Sbjct:     5 ASLTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVV 64

Query:    66 ILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125
             ILL + G +SH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TIM FGA+GT++S 
Sbjct:    65 ILLISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSC 124

Query:   126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV 185
              IIS GA+ FFK+++IGT  +GD+LAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV
Sbjct:   125 TIISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV 184

Query:   186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYM 245
             VNDATSVVLFNAIQSFDL+H+N   A +F+G+FFYLF+ ST LGV  GL+SA++IKKLY 
Sbjct:   185 VNDATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYF 244

Query:   246 GRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHA 305
             GRHSTDREVALM+LMAYLSYMLAELF LSGILTVFFCGIVMSHYTWHNVTESSR+TTKHA
Sbjct:   245 GRHSTDREVALMMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTKHA 304

Query:   306 FATLSFVAEIFIFLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSF 365
             FATLSF+AE FIFLYVGMDALDIEKWR V DSPG SV VS+IL+GLV+LGRAAFVFPLSF
Sbjct:   305 FATLSFLAETFIFLYVGMDALDIEKWRFVSDSPGTSVAVSSILMGLVMLGRAAFVFPLSF 364

Query:   366 LSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTIT 425
             LSNL KK   EKI +KQQ+ IWWAGLMRGAVSMALAY +FT SGHT+L GNAIMITSTIT
Sbjct:   365 LSNLAKKHQSEKISIKQQVVIWWAGLMRGAVSMALAYNKFTRSGHTELRGNAIMITSTIT 424

Query:   426 VVLFSTVVFGLMTQPLVRILLPSSK---NLSRMLSDESSTPKSFIVPLLGNGQGSEADL- 481
             V LFST+VFG++T+PL+R L+P  K   + + MLSD+S TPKS  +PLL   Q    +L 
Sbjct:   425 VCLFSTMVFGMLTKPLIRYLMPHQKATTSTTSMLSDDS-TPKSIHIPLLDGEQLDSFELP 483

Query:   482 -KTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFM 515
                 +V RP SLR  L  P+ TVH+YWR+FDDAFM
Sbjct:   484 GSHQDVPRPNSLRGFLMRPTRTVHYYWRQFDDAFM 518
GO:0005576 "extracellular region" evidence=ISM
GO:0006814 "sodium ion transport" evidence=ISS;RCA
GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0035725 "sodium ion transmembrane transport" evidence=ISS;IDA
GO:0010107 "potassium ion import" evidence=IDA
GO:0015386 "potassium:hydrogen antiporter activity" evidence=IDA
GO:0015992 "proton transport" evidence=IDA
GO:0055075 "potassium ion homeostasis" evidence=IGI
GO:0090333 "regulation of stomatal closure" evidence=IGI
GO:0010351 "lithium ion transport" evidence=RCA
TAIR|locus:2181246 NHX1 "Na+/H+ exchanger 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081111 NHX4 "sodium hydrogen exchanger 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173972 NHX3 "AT5G55470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0026787 Nhe1 "Na[+]/H[+] hydrogen exchanger 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ75 Q5ZJ75 "Sodium/hydrogen exchanger 8" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1924281 Slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308193 Slc9a8 "solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4L208 Slc9a8 "Sodium/hydrogen exchanger 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7C3 SLC9A8 "Sodium/hydrogen exchanger" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84WG1NHX3_ARATHNo assigned EC number0.76190.92631.0nono
Q56XP4NHX2_ARATHNo assigned EC number0.75090.98710.9816yesno
Q68KI4NHX1_ARATHNo assigned EC number0.73120.97600.9851nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019830001
RecName- Full=Sodium/hydrogen exchanger; (541 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
TIGR00840559 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 4e-60
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 2e-42
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 3e-37
TIGR00831525 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo 3e-21
COG3263574 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip 3e-09
PRK05326562 PRK05326, PRK05326, potassium/proton antiporter; R 1e-08
COG0475397 COG0475, KefB, Kef-type K+ transport systems, memb 4e-05
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 1e-04
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 Back     alignment and domain information 
 Score =  207 bits (529), Expect = 4e-60
 Identities = 122/408 (29%), Positives = 197/408 (48%), Gaps = 34/408 (8%)

Query: 47  RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQF 106
           R + ES+  ++ GL  G +I  + +             FF+YLLPPI+ +AG+ + ++ F
Sbjct: 33  RAVPESVLLIVYGLLVGGIIKASPHIDP---PTLDSSYFFLYLLPPIVLDAGYFMPQRNF 89

Query: 107 FRNFMTIMLFGAVGTLISFVIISAG--AVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164
           F N  +I++F  VGTLI+  +I      +          + + D L  G++ +A D V  
Sbjct: 90  FENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAV 149

Query: 165 LQVLNQ-DETPLLYSLVFGEGVVNDATSVVLFNAIQSF---DLSHINLSIALKFVGSFFY 220
           L V  +      LY ++FGE ++NDA +VVL+N    F       + +    +   SFF 
Sbjct: 150 LAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFV 209

Query: 221 LFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVF 280
           +     ++GV+ G L AFI +      H    E   + L++YLSY+ AE  +LSGIL + 
Sbjct: 210 VTCGGLLVGVVFGFLVAFITRFT---HHIRQIEPLFVFLISYLSYLFAETLHLSGILALI 266

Query: 281 FCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD---IEKWRVVRDS 337
           FCGI M  Y   N++  S+ T K+    LS ++E  IF+++G+  +       W  V   
Sbjct: 267 FCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFV--- 323

Query: 338 PGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSSHEKIGLKQQLTIWWAGLMRGAVS 397
                      L   ++ R   V  LS+++N  +     +I  K QL I++AGL RGAV+
Sbjct: 324 --------VATLSFCVIYRVLGVRTLSWITNEFRP---VEIPYKDQLVIFYAGL-RGAVA 371

Query: 398 MALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRIL 445
            ALA                + +T+T+ VV F+ +  G   +PLV +L
Sbjct: 372 FALAL----LLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVL 415

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form Back     alignment and domain information
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed Back     alignment and domain information
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 543
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 100.0
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 100.0
KOG1966 670 consensus Sodium/hydrogen exchanger protein [Inorg 100.0
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 100.0
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 100.0
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 100.0
PRK05326562 potassium/proton antiporter; Reviewed 100.0
COG3263574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 100.0
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
PRK03562 621 glutathione-regulated potassium-efflux system prot 99.96
COG0475397 KefB Kef-type K+ transport systems, membrane compo 99.96
PLN03159 832 cation/H(+) antiporter 15; Provisional 99.95
PRK03659 601 glutathione-regulated potassium-efflux system prot 99.95
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 99.95
PRK10669558 putative cation:proton antiport protein; Provision 99.95
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 99.57
KOG1650 769 consensus Predicted K+/H+-antiporter [Inorganic io 99.55
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.17
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 98.37
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 97.46
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 97.26
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 97.05
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 96.93
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 96.9
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 96.88
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 96.67
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 96.63
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 96.27
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 95.48
TIGR00698335 conserved hypothetical integral membrane protein. 94.42
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 94.37
PRK03659601 glutathione-regulated potassium-efflux system prot 94.28
COG0385319 Predicted Na+-dependent transporter [General funct 94.16
PRK03562621 glutathione-regulated potassium-efflux system prot 94.16
PRK10669558 putative cation:proton antiport protein; Provision 93.79
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 93.66
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 93.18
COG2855334 Predicted membrane protein [Function unknown] 92.58
PLN03159832 cation/H(+) antiporter 15; Provisional 92.25
PF03956191 DUF340: Membrane protein of unknown function (DUF3 91.27
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 90.44
PF05982327 DUF897: Domain of unknown function (DUF897) ; Inte 88.98
TIGR00841286 bass bile acid transporter. Functionally character 88.91
COG2431297 Predicted membrane protein [Function unknown] 88.37
COG0475397 KefB Kef-type K+ transport systems, membrane compo 87.25
TIGR00832328 acr3 arsenical-resistance protein. The first prote 86.91
COG3493438 CitS Na+/citrate symporter [Energy production and 86.41
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 85.78
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 85.74
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 85.6
PRK03818552 putative transporter; Validated 83.51
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 83.45
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 82.81
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 82.33
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 82.24
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 81.79
KOG3826252 consensus Na+/H+ antiporter [Inorganic ion transpo 81.74
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 81.49
PF03390414 2HCT: 2-hydroxycarboxylate transporter family; Int 81.19
PRK04125141 murein hydrolase regulator LrgA; Provisional 80.82
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-85  Score=679.53  Aligned_cols=513  Identities=47%  Similarity=0.738  Sum_probs=446.3

Q ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhhcCCCCc---cccccChhHHHHHhhH
Q 009116           17 SSDHKSVVSMNLFVALLCACIVIGHLLEENR--WMNESITALIIGLCTGIVILLTTNGTSS---HVLMFSEDLFFIYLLP   91 (543)
Q Consensus        17 ~~~~~~~~~i~l~~~ll~~~~~~~~~l~~~~--~lp~~~~~ll~Gil~G~~~~~~~~~~~~---~~~~~~~~~~~~~~Lp   91 (543)
                      ++||++.+++++++.+|++|++.+|+++++|  |+||++..+++|+++|.++++..+++.+   +...++||.|+.++||
T Consensus        28 ~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLP  107 (575)
T KOG1965|consen   28 EQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLP  107 (575)
T ss_pred             hhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhc
Confidence            7899999999999999999999999999765  8999999999999999999988887777   7789999999999999


Q ss_pred             HHhHHhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhccccCCCHHHHHHhhccc
Q 009116           92 PIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD  171 (543)
Q Consensus        92 ~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGailsaTDpv~v~~il~~~  171 (543)
                      ||+|++||++++++|+||+++|+.++++|+++++.++|.++|++..+....+++|.+|+++||++||||||+|+++++|+
T Consensus       108 piif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel  187 (575)
T KOG1965|consen  108 PIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNEL  187 (575)
T ss_pred             hhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHh
Confidence            99999999999999999999999999999999999999999987554445589999999999999999999999999999


Q ss_pred             CC-chhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 009116          172 ET-PLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHST  250 (543)
Q Consensus       172 ~~-~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~~~~~~~  250 (543)
                      ++ |++|++++|||++|||++||+|+.++.+...+.+.....+.++.|++.+++|..+|++.|++.++++|+.+. |+.+
T Consensus       188 ~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l-~~~~  266 (575)
T KOG1965|consen  188 GVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYL-RRTP  266 (575)
T ss_pred             CCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc
Confidence            97 689999999999999999999999999988877766777899999999999999999999999999999987 5889


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhHHHHHhhcccccccch
Q 009116          251 DREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEK  330 (543)
Q Consensus       251 ~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~lG~~~~~~~~  330 (543)
                      ..|..++++++|.+|++||.+|+|||+++++||++|+||+++|.++++|.++||+|+++++++|+++|.|+|+.+.+.++
T Consensus       267 ~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k  346 (575)
T KOG1965|consen  267 SLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQK  346 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             hhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCCCChhhHHHHHHhcccchhHHHHhhhhhhccCC
Q 009116          331 WRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKKSS-HEKIGLKQQLTIWWAGLMRGAVSMALAYKQFTSSG  409 (543)
Q Consensus       331 w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~GlpRGavs~aLa~~~~~~~~  409 (543)
                      |.+.      ...+.....++++++|++.+||++++.|..||.+ ..+++.|+|.++||+|.+|||+++|||.....+.+
T Consensus       347 ~~~~------~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~  420 (575)
T KOG1965|consen  347 HVYK------SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSP  420 (575)
T ss_pred             eeee------chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccc
Confidence            7654      2345566677899999999999999999998754 55699999999999995599999999987644332


Q ss_pred             CccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCcccccccCCC------------------CCCCcccccccc
Q 009116          410 HTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRILLPSSKNLSRMLSDE------------------SSTPKSFIVPLL  471 (543)
Q Consensus       410 ~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~l  471 (543)
                      ++   .+++++++|+.+|++|+++.|.++.|+++++.++.++..... ++                  .+.+++.+.+..
T Consensus       421 ~~---~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~i~~~  496 (575)
T KOG1965|consen  421 HT---GGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAADEV-DESWRLEPGVEFYLVTKLGVLSLTSSAYITIL  496 (575)
T ss_pred             cc---cccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccccc-chhhhccccccccccccccccccccccCcchh
Confidence            21   468999999999999999999999999999998776543211 00                  001111122111


Q ss_pred             CCC--CCCCCCCCCCCCCCchhhhhhhcCCcchhhhhHHHhhhcccccccCCCCCCcCCCCCCCcccchhh
Q 009116          472 GNG--QGSEADLKTPNVTRPTSLRMLLATPSHTVHHYWRKFDDAFMRPVFGGRGFVPVVPGSPLEQSVHQW  540 (543)
Q Consensus       472 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~fd~~~~~p~f~~~~~~~~~~~~~~~~~~~~~  540 (543)
                      ...  +..+|+...++.++..+.|....++++..|.+||++|+..+++.+++||.+|..|.+|.++..+..
T Consensus       497 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (575)
T KOG1965|consen  497 QLRQAELFDEPTRSSDSRFLLSLGFFQLTYTSLTHLYGRIFSRTSMRHIFGQRGLVPLKPNPPIRKLPNLS  567 (575)
T ss_pred             hhhhhhhccccCCccCccccccccceeeeecccccccccccCcchhcccccccCcccCCCCcccccCCccc
Confidence            111  111233333345566778888899999999999999999999999999999999999998765443

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>COG2431 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>COG3493 CitS Na+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom Back     alignment and domain information
>PRK04125 murein hydrolase regulator LrgA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
2k3c_A33 TMIX peptide; membrane peptide, dodecylphosphochol 2e-04
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Length = 33 Back     alignment and structure
 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 21/26 (80%)

Query: 261 AYLSYMLAELFYLSGILTVFFCGIVM 286
           +Y++Y+ AELF+LSGI+ +   G+VM
Sbjct: 3   SYMAYLSAELFHLSGIMALIASGVVM 28

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.42
2l0e_A33 Sodium/hydrogen exchanger 1; transmembrane helix, 98.25
2htg_A28 NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; 97.91
2k3c_A33 TMIX peptide; membrane peptide, dodecylphosphochol 97.91
1y4e_A27 Sodium/hydrogen exchanger 1; NHE1 isoform, transme 97.29
2kbv_A28 Sodium/hydrogen exchanger 1; transmembrane, peptid 97.12
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 93.95
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.42  E-value=2.8e-12  Score=131.79  Aligned_cols=309  Identities=13%  Similarity=0.115  Sum_probs=196.1

Q ss_pred             HHHHHhhHHHhHHhhhcCCHHHH----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhcccc
Q 009116           84 LFFIYLLPPIIFNAGFQVKKKQF----FRNFM--TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFA  157 (543)
Q Consensus        84 ~~~~~~Lp~IlF~aG~~l~~~~f----~~~~~--~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~l~~~~alllGails  157 (543)
                      ++-.-++.+.+|.+|+|+|.+.+    ++..+  .-...|+.|+++++.+     |+.+      +....++.--+++.+
T Consensus        62 windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip~  130 (388)
T 1zcd_A           62 WINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIPA  130 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSSS
T ss_pred             HHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHHH
Confidence            34567888899999999998866    44433  3577888899888654     3344      555566788999999


Q ss_pred             CCCHHHHHHhhcccC--Cc-hhHHHHHHHHhhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009116          158 ATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGL  234 (543)
Q Consensus       158 aTDpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~  234 (543)
                      +||-+.++.++...+  .| .++..+.+-+++||..++++..++..   ++.+..   ....         .+. .   .
T Consensus       131 ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~~~---~l~~---------~~~-~---~  191 (388)
T 1zcd_A          131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLSMA---SLGV---------AAV-A---I  191 (388)
T ss_dssp             CCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHH---HHHH---------HHH-H---H
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccHH---HHHH---------HHH-H---H
Confidence            999999999998764  55 58899999999999999999887743   222221   1110         011 1   1


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhccccccccccchhHHHHHHHHHHH-HHH
Q 009116          235 LSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLS-FVA  313 (543)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~l~y~~Ae~~~~SGilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~  313 (543)
                      ...+..+|.    +.+.....+.+  ....++.++..|.+.++|.|++|+++.....++  ++..++.++..+.++ +++
T Consensus       192 ~~~~~l~r~----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~--~~~~~~le~~l~p~v~~~i  263 (388)
T 1zcd_A          192 AVLAVLNLC----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHG--RSPAKRLEHVLHPWVAYLI  263 (388)
T ss_dssp             HHHHHHHHT----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGS--SCHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHh----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccC--CCHHHHHHHHHHHHHHHHH
Confidence            111333332    22222222222  336677789999999999999999999754322  122445666666655 588


Q ss_pred             hHHH-HHhhcccccccchhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCCCCChhhHHHHHH-hc
Q 009116          314 EIFI-FLYVGMDALDIEKWRVVRDSPGKSVGVSAILLGLVLLGRAAFVFPLSFLSNLTKK-SSHEKIGLKQQLTIWW-AG  390 (543)
Q Consensus       314 ~~~~-Fv~lG~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-~G  390 (543)
                      -++| |+..|+++.... .+..    ....  ...+.+..+++|+++++..+++..+.+. +.+++.+|+|..-++. +|
T Consensus       264 lPlFaFanaGv~l~~~~-~~~l----~~~~--~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~g  336 (388)
T 1zcd_A          264 LPLFAFANAGVSLQGVT-LDGL----TSIL--PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCG  336 (388)
T ss_dssp             HHHHHHHHCCCCCSSSC-CCTH----HHHS--STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTT
T ss_pred             HHHHHHHhcCeeecccc-hhhc----cChH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhc
Confidence            9999 999999985321 0000    0001  1122345689999998888887644331 3456899999977777 55


Q ss_pred             ccchhHHHHhhhhhhccCCCccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 009116          391 LMRGAVSMALAYKQFTSSGHTKLHGNAIMITSTITVVLFSTVVFGLMTQPLVRIL  445 (543)
Q Consensus       391 lpRGavs~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l  445 (543)
                       .||.+++..+...+. .+.  ....+.....++..+++|+++    .+.++|+.
T Consensus       337 -igftmsL~Ia~laf~-~~~--~~~~~~ak~~il~~s~~s~i~----g~~~L~~~  383 (388)
T 1zcd_A          337 -IGFTMSIFIASLAFG-SVD--PELINWAKLGILVGSISSAVI----GYSWLRVR  383 (388)
T ss_dssp             -CCHHHHHHHHHHHST-TSS--CSSHHHHHHHHHHHHHTTTST----TTGGGTTT
T ss_pred             -cchHHHHHHHHHhcc-CCc--hhhHhhHHHHHHHHHHHHHHH----HHHHHHHh
Confidence             599999988755432 111  011222244445555555555    55555443
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Back     alignment and structure
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic} Back     alignment and structure
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Back     alignment and structure
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens} Back     alignment and structure
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic} Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00