Citrus Sinensis ID: 009645

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
MSLKLDSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPREESSEISSPKSSSALLPLLANGQDLASELDSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGGEESPPNDILH
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccc
cccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHEEEEccccccccccccccEEEEEEcccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHccccHcHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHEHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEHEEHHHHHHHHHHHcHHHHHHHHccccccccccccHccHHHHHHHHHccHHccccccccccccccccHHHHHHHHcccccHHHHHHHHccHHHHHHHHccccccccccHHcc
MSLKLDSVStllnepdaapvhSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTtngkisdillfdedlfficllppiifnagFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGltfwdqgdFLALGAILSATDTVCTLQvlnqedtpllYSLVFGEGVVNDATSIVLFNAIQKfsvhvtpdtvmQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYtwhnitessrvttkhTFATLSFISETFIFLYVGmdaldmekwkivkgspgtsvAVSSTLLGLVLVGRAASVFSVSFLsnlandspidkigfKQQVTIWWAGLMRGAVSVALAYNkftssghtqrpknaiMITSTITIVLFSNVVFGLLTKPLVRLmlqpreesseisspksssallplLANGQDLASELdsvgggisirrpssltmlitkptstVHYYWRkfdnavmrpifggggeesppndilh
MSLKLDSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNlandspidkIGFKQQVTIWWAGLMRGAVSVALAYNKFtssghtqrpknAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPReesseisspksssaLLPLLANGQDLASELDSVgggisirrpssltmlitKPTSTVHYYWRKFDNAVMRPIFggggeesppndilh
MSLKLDSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVkkkqffqnfiiinLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQftgsflylfslstllgIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGtsvavsstllglvlvgRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQpreesseisspksssallpllANGQDLASELDSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGGEESPPNDILH
*****************APVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLML************************************GGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFG*************
**************PDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRL********************************************************TSTVHYYWRKFDNAVMRPIF**************
********STLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQP*************SALLPLLANGQDLASELDSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGG**********
*****DSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPRE*****SSPKSSSALLPLLANGQDLASELDSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGG**********
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLKLDSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPREESSEISSPKSSSALLPLLANGQDLASELDSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGGEESPPNDILH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query530 2.2.26 [Sep-21-2011]
Q56XP4546 Sodium/hydrogen exchanger yes no 0.958 0.930 0.652 0.0
Q68KI4538 Sodium/hydrogen exchanger no no 0.966 0.951 0.628 0.0
Q84WG1503 Sodium/hydrogen exchanger no no 0.824 0.868 0.685 1e-169
Q8S397529 Sodium/hydrogen exchanger no no 0.947 0.948 0.550 1e-159
Q5ZJ75574 Sodium/hydrogen exchanger yes no 0.733 0.677 0.346 8e-54
Q4L208575 Sodium/hydrogen exchanger yes no 0.747 0.688 0.351 2e-53
Q8R4D1576 Sodium/hydrogen exchanger yes no 0.747 0.687 0.351 3e-53
Q9Y2E8581 Sodium/hydrogen exchanger yes no 0.854 0.779 0.322 3e-53
Q04121633 Endosomal/prevacuolar sod yes no 0.681 0.570 0.344 1e-48
Q552S0674 Sodium/hydrogen exchanger yes no 0.8 0.629 0.313 5e-46
>sp|Q56XP4|NHX2_ARATH Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2 Back     alignment and function desciption
 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/526 (65%), Positives = 418/526 (79%), Gaps = 18/526 (3%)

Query: 4   KLDSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVI 63
           K+ SVST     D A V S+ LFVAL+ ACIVIGHLL++ RWMN+S+TAL  GL T  VI
Sbjct: 10  KMLSVST----SDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVVI 65

Query: 64  ILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFG 123
           +L + GK S +L+F EDLFFI LLPPIIFNAGFQVKKKQFF+NF+ I  FG +GT++S  
Sbjct: 66  LLISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSCT 125

Query: 124 IISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVV 183
           IIS+G+ + F K  +  +D GDFLA+GAI +ATD+VCTLQVLNQ++TPLLYSLVFGEGVV
Sbjct: 126 IISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVV 185

Query: 184 NDATSIVLFNAIQKFSV-HVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFG 242
           NDATS+VLFNAIQ F + H+  +   QF G+F YLF LST LG+A GL+SAY+I++LYFG
Sbjct: 186 NDATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYFG 245

Query: 243 RHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTF 302
           RHSTDREVALM+LMAYLSY++A+LF LSGILTVFFCGIVMSHYTWHN+TESSR+TTKH F
Sbjct: 246 RHSTDREVALMMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTKHAF 305

Query: 303 ATLSFISETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFL 362
           ATLSF++ETFIFLYVGMDALD+EKW+ V  SPGTSVAVSS L+GLV++GRAA VF +SFL
Sbjct: 306 ATLSFLAETFIFLYVGMDALDIEKWRFVSDSPGTSVAVSSILMGLVMLGRAAFVFPLSFL 365

Query: 363 SNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITI 422
           SNLA     +KI  KQQV IWWAGLMRGAVS+ALAYNKFT SGHT+   NAIMITSTIT+
Sbjct: 366 SNLAKKHQSEKISIKQQVVIWWAGLMRGAVSMALAYNKFTRSGHTELRGNAIMITSTITV 425

Query: 423 VLFSNVVFGLLTKPLVRLMLQPREES--------SEISSPKSSSALLPLLANGQDLASEL 474
            LFS +VFG+LTKPL+R ++ P +++        S+ S+PKS    +PLL +G+ L S  
Sbjct: 426 CLFSTMVFGMLTKPLIRYLM-PHQKATTSTTSMLSDDSTPKSIH--IPLL-DGEQLDS-F 480

Query: 475 DSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGG 520
           +  G    + RP+SL   + +PT TVHYYWR+FD+A MRP+FGG G
Sbjct: 481 ELPGSHQDVPRPNSLRGFLMRPTRTVHYYWRQFDDAFMRPVFGGRG 526
Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.
Arabidopsis thaliana (taxid: 3702)
>sp|Q68KI4|NHX1_ARATH Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2 Back     alignment and function description
>sp|Q84WG1|NHX3_ARATH Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2 Back     alignment and function description
>sp|Q8S397|NHX4_ARATH Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2 Back     alignment and function description
>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1 Back     alignment and function description
>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4 Back     alignment and function description
>sp|Q04121|NHX1_YEAST Endosomal/prevacuolar sodium/hydrogen exchanger OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NHX1 PE=1 SV=1 Back     alignment and function description
>sp|Q552S0|NHE1_DICDI Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
224128576528 sodium proton exchanger [Populus trichoc 0.973 0.977 0.693 0.0
254029406537 vacuolar Na+/H+ antiporter [Rhizophora s 0.949 0.936 0.701 0.0
268526592528 Na+/H+ antiporter [Populus euphratica] 0.967 0.971 0.684 0.0
255317069528 Na+/H+ exchanger 1 [Populus euphratica] 0.973 0.977 0.682 0.0
261873771538 putative NHX2 antiporter isoform 1 [Viti 0.945 0.931 0.701 0.0
225436799538 PREDICTED: sodium/hydrogen exchanger 2 [ 0.945 0.931 0.699 0.0
255559332536 sodium/hydrogen exchanger, putative [Ric 0.967 0.957 0.674 0.0
225432394541 PREDICTED: sodium/hydrogen exchanger 2 [ 0.962 0.942 0.680 0.0
52546974546 Na+/H+ antiporter [Iris lactea] 0.941 0.913 0.687 0.0
47679397542 NHX1 [Citrus reticulata] 0.952 0.931 0.672 0.0
>gi|224128576|ref|XP_002320366.1| sodium proton exchanger [Populus trichocarpa] gi|222861139|gb|EEE98681.1| sodium proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/526 (69%), Positives = 428/526 (81%), Gaps = 10/526 (1%)

Query: 11  LLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTATVIILTTNGK 70
           +++EPD AP+HS+TLFVAL+ ACI+IGHLL+K RW+N+S+TALA GLCT T+I+LTT G+
Sbjct: 7   MVSEPDQAPIHSITLFVALLCACILIGHLLEKHRWINESITALAIGLCTGTLILLTTQGR 66

Query: 71  ISDILLFDEDLFFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSA 130
            S ILLFDE LFFI LLPPIIFNAGFQVKKKQFF+NF+ I LFG VGTLISF IIS+G+A
Sbjct: 67  SSHILLFDEQLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFIIISLGTA 126

Query: 131 KLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGEGVVNDATSIV 190
           +LF K  + F D  D+L LGAI SATD+VCTLQVL+QE+TPLLYSLVFGEGVVNDATSIV
Sbjct: 127 QLFKKLDIGFLDTVDYLGLGAIFSATDSVCTLQVLDQEETPLLYSLVFGEGVVNDATSIV 186

Query: 191 LFNAIQKFSV-HVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDRE 249
           LFNAI +F + H+T  + +   G+F YLF  ST LGIAVGL+SAYII++LYFGRHSTDRE
Sbjct: 187 LFNAILRFDLSHITSSSAIHLLGNFFYLFGASTALGIAVGLISAYIIKKLYFGRHSTDRE 246

Query: 250 VALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFIS 309
           VALMILMAYLSY+MA+LF LSGILTVFFCGI+MSHYTWHN++ESSRVTTKH FAT+SFIS
Sbjct: 247 VALMILMAYLSYIMAELFNLSGILTVFFCGILMSHYTWHNVSESSRVTTKHAFATMSFIS 306

Query: 310 ETFIFLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDS 369
           E FIFLYVGMDALD+EKWKIV  SPG S+ VSS LLGLVLVGRAAS+F +SF+SNL   S
Sbjct: 307 EIFIFLYVGMDALDIEKWKIVSKSPGKSIGVSSILLGLVLVGRAASIFPLSFISNLTKKS 366

Query: 370 PIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVV 429
             DKIGFKQQ+ IWWAGLMRGAVS+ALAYN+FT SGHTQ  +NAIMITSTIT+VLFS VV
Sbjct: 367 QSDKIGFKQQIVIWWAGLMRGAVSMALAYNQFTRSGHTQLQENAIMITSTITVVLFSTVV 426

Query: 430 FGLLTKPLVRLMLQPREESSEISSPKSSSALLPLLANGQDLASELDSVGGGISIRRPSSL 489
           FGLLTKPL+  +L  +               LPLLANGQD  S+++    G  I RP SL
Sbjct: 427 FGLLTKPLISFLLPRKHTMLPSDLTNLKLLNLPLLANGQDSESDMN----GDHIPRPVSL 482

Query: 490 TMLITKPTSTVHYYWRKFDNAVMRPIFGGGG-----EESPPNDILH 530
            ML+T P+ TVH+ WRKFD++ MRP+FGG G      +SPP  I+H
Sbjct: 483 RMLLTTPSHTVHHLWRKFDDSFMRPVFGGRGFTAHVHDSPPERIIH 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|254029406|gb|ACT53748.1| vacuolar Na+/H+ antiporter [Rhizophora stylosa] Back     alignment and taxonomy information
>gi|268526592|gb|ACZ05630.1| Na+/H+ antiporter [Populus euphratica] Back     alignment and taxonomy information
>gi|255317069|gb|ACU01852.1| Na+/H+ exchanger 1 [Populus euphratica] Back     alignment and taxonomy information
>gi|261873771|gb|ACY03397.1| putative NHX2 antiporter isoform 1 [Vitis vinifera] gi|261873773|gb|ACY03398.1| putative NHX2 antiporter isoform 2 [Vitis vinifera] gi|261873775|gb|ACY03399.1| putative NHX2 antiporter isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225436799|ref|XP_002269477.1| PREDICTED: sodium/hydrogen exchanger 2 [Vitis vinifera] gi|296086632|emb|CBI32267.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559332|ref|XP_002520686.1| sodium/hydrogen exchanger, putative [Ricinus communis] gi|223540071|gb|EEF41648.1| sodium/hydrogen exchanger, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225432394|ref|XP_002277061.1| PREDICTED: sodium/hydrogen exchanger 2 [Vitis vinifera] gi|147792256|emb|CAN61480.1| hypothetical protein VITISV_010931 [Vitis vinifera] gi|297736919|emb|CBI26120.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|52546974|gb|AAU81619.1| Na+/H+ antiporter [Iris lactea] Back     alignment and taxonomy information
>gi|47679397|gb|AAT36679.1| NHX1 [Citrus reticulata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
TAIR|locus:2114810546 NHX2 "sodium hydrogen exchange 0.971 0.943 0.575 3.6e-153
TAIR|locus:2181246538 NHX1 "Na+/H+ exchanger 1" [Ara 0.967 0.953 0.571 3.3e-150
TAIR|locus:2081111503 NHX4 "sodium hydrogen exchange 0.826 0.870 0.613 1.9e-138
TAIR|locus:2173972529 NHX3 "AT5G55470" [Arabidopsis 0.988 0.990 0.490 1.4e-126
ZFIN|ZDB-GENE-041212-7640 slc9a8 "solute carrier family 0.747 0.618 0.314 1e-45
MGI|MGI:1924281576 Slc9a8 "solute carrier family 0.747 0.687 0.312 2.1e-45
UNIPROTKB|Q9Y2E8581 SLC9A8 "Sodium/hydrogen exchan 0.747 0.681 0.312 2.7e-45
RGD|1308193575 Slc9a8 "solute carrier family 0.747 0.688 0.312 2.7e-45
UNIPROTKB|Q4L208575 Slc9a8 "Sodium/hydrogen exchan 0.747 0.688 0.312 2.7e-45
DICTYBASE|DDB_G0275711674 nhe1 "cation/hydrogen exchange 0.771 0.606 0.292 3.4e-45
TAIR|locus:2114810 NHX2 "sodium hydrogen exchanger 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
 Identities = 302/525 (57%), Positives = 367/525 (69%)

Query:     1 MSLKLDSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTRWMNQSVTALAFGLCTA 60
             ++ K+ SVST     D A V S+ LFVAL+ ACIVIGHLL++ RWMN+S+TAL  GL T 
Sbjct:     7 LTSKMLSVST----SDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTG 62

Query:    61 TVIILTTNGKISDILLFDEDLFFICLLPPIIFNAGFQVXXXXXXXXXXXXXLFGVVGTLI 120
              VI+L + GK S +L+F EDLFFI LLPPIIFNAGFQV              FG +GT++
Sbjct:    63 VVILLISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVV 122

Query:   121 SFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTLQVLNQEDTPLLYSLVFGE 180
             S  IIS+G+ + F K  +  +D GDFLA+GAI +ATD+VCTLQVLNQ++TPLLYSLVFGE
Sbjct:   123 SCTIISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGE 182

Query:   181 GVVNDATSIVLFNAIQKFSV-HVTPDTVMQXXXXXXXXXXXXXXXXIAVGLMSAYIIREL 239
             GVVNDATS+VLFNAIQ F + H+  +   Q                +A GL+SAY+I++L
Sbjct:   183 GVVNDATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKL 242

Query:   240 YFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTK 299
             YFGRHSTDREVALM+LMAYLSY++A+LF LSGILTVFFCGIVMSHYTWHN+TESSR+TTK
Sbjct:   243 YFGRHSTDREVALMMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTK 302

Query:   300 HTFATLSFISETFIFLYVGMDALDMEKWKIVKGSPGXXXXXXXXXXXXXXXXRAASVFSV 359
             H FATLSF++ETFIFLYVGMDALD+EKW+ V  SPG                RAA VF +
Sbjct:   303 HAFATLSFLAETFIFLYVGMDALDIEKWRFVSDSPGTSVAVSSILMGLVMLGRAAFVFPL 362

Query:   360 SFLSNLANDSPIDKIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITST 419
             SFLSNLA     +KI  KQQV IWWAGLMRGAVS+ALAYNKFT SGHT+   NAIMITST
Sbjct:   363 SFLSNLAKKHQSEKISIKQQVVIWWAGLMRGAVSMALAYNKFTRSGHTELRGNAIMITST 422

Query:   420 ITIVLFSNVVFGLLTKPLVRLMLQXXXXXXXXXXXXXXXXXXXXX----ANGQDLASELD 475
             IT+ LFS +VFG+LTKPL+R ++                           +G+ L S  +
Sbjct:   423 ITVCLFSTMVFGMLTKPLIRYLMPHQKATTSTTSMLSDDSTPKSIHIPLLDGEQLDS-FE 481

Query:   476 SVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGG 520
               G    + RP+SL   + +PT TVHYYWR+FD+A MRP+FGG G
Sbjct:   482 LPGSHQDVPRPNSLRGFLMRPTRTVHYYWRQFDDAFMRPVFGGRG 526
GO:0005576 "extracellular region" evidence=ISM
GO:0006814 "sodium ion transport" evidence=ISS;RCA
GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0035725 "sodium ion transmembrane transport" evidence=ISS;IDA
GO:0010107 "potassium ion import" evidence=IDA
GO:0015386 "potassium:hydrogen antiporter activity" evidence=IDA
GO:0015992 "proton transport" evidence=IDA
GO:0055075 "potassium ion homeostasis" evidence=IGI
GO:0090333 "regulation of stomatal closure" evidence=IGI
GO:0010351 "lithium ion transport" evidence=RCA
TAIR|locus:2181246 NHX1 "Na+/H+ exchanger 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081111 NHX4 "sodium hydrogen exchanger 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173972 NHX3 "AT5G55470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-7 slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1924281 Slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2E8 SLC9A8 "Sodium/hydrogen exchanger 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1308193 Slc9a8 "solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4L208 Slc9a8 "Sodium/hydrogen exchanger 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275711 nhe1 "cation/hydrogen exchanger 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56XP4NHX2_ARATHNo assigned EC number0.65200.95840.9304yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00140792
sodium proton exchanger (528 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
TIGR00840559 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 4e-64
COG0025429 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport 4e-40
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 3e-32
TIGR00831525 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo 6e-24
PRK05326562 PRK05326, PRK05326, potassium/proton antiporter; R 5e-11
COG3263574 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip 3e-09
COG0475397 COG0475, KefB, Kef-type K+ transport systems, memb 1e-05
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 3e-04
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 Back     alignment and domain information 
 Score =  218 bits (556), Expect = 4e-64
 Identities = 140/460 (30%), Positives = 223/460 (48%), Gaps = 36/460 (7%)

Query: 23  VTLFVALVSACIVIGHLLQK-TRWMNQSVTALAFGLCTATVIILTTNGKISDILLFDEDL 81
             L++ L S   +  HL  K  R + +SV  + +GL     II  +     D    D   
Sbjct: 11  FILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGG-IIKASPHI--DPPTLDSSY 67

Query: 82  FFICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFW 141
           FF+ LLPPI+ +AG+ + ++ FF+N   I +F VVGTLI+  +I +    + +  G    
Sbjct: 68  FFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSI 127

Query: 142 DQG--DFLALGAILSATDTVCTLQVLNQEDT-PLLYSLVFGEGVVNDATSIVLFNAIQKF 198
           D G  D L  G+++SA D V  L V  +      LY ++FGE ++NDA ++VL+N   KF
Sbjct: 128 DIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKF 187

Query: 199 SV----HVT-PDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFGRHSTDREVALM 253
                  VT  D        F+       L+G+  G + A+I R   F  H    E   +
Sbjct: 188 HKTADEPVTIVDVFEGCASFFVVTCG-GLLVGVVFGFLVAFITR---FTHHIRQIEPLFV 243

Query: 254 ILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFI 313
            L++YLSY+ A+   LSGIL + FCGI M  Y   N++  S+ T K+    LS +SET I
Sbjct: 244 FLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLI 303

Query: 314 FLYVGMDALD-MEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSPID 372
           F+++G+  +    +W            V +TL    ++ R   V ++S+++N        
Sbjct: 304 FIFLGVSLVTENHEW--------NWAFVVATLS-FCVIYRVLGVRTLSWITNEFR---PV 351

Query: 373 KIGFKQQVTIWWAGLMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVVFGL 432
           +I +K Q+ I++AGL RGAV+ ALA            P   + +T+T+ +V F+ +  G 
Sbjct: 352 EIPYKDQLVIFYAGL-RGAVAFALAL----LLDEKIFPYKFLFVTTTLVVVFFTVIFQGG 406

Query: 433 LTKPLVRLMLQPREESSE--ISSPKSSSALLPLLANGQDL 470
             KPLV ++   +   S+  I+          LL   +D+
Sbjct: 407 TIKPLVEVLKVKKGCISKTKINEELHDREFDHLLPGIEDI 446

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form Back     alignment and domain information
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed Back     alignment and domain information
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 530
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 100.0
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 100.0
KOG1966 670 consensus Sodium/hydrogen exchanger protein [Inorg 100.0
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 100.0
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 100.0
PRK05326562 potassium/proton antiporter; Reviewed 100.0
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 100.0
COG3263574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 100.0
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
COG0475397 KefB Kef-type K+ transport systems, membrane compo 99.96
PLN03159 832 cation/H(+) antiporter 15; Provisional 99.96
PRK03562 621 glutathione-regulated potassium-efflux system prot 99.96
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 99.95
PRK03659 601 glutathione-regulated potassium-efflux system prot 99.95
PRK10669558 putative cation:proton antiport protein; Provision 99.95
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 99.69
KOG1650 769 consensus Predicted K+/H+-antiporter [Inorganic io 99.55
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.08
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 98.4
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 97.42
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 97.23
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 97.11
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 97.08
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 97.06
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 96.81
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 96.79
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 96.6
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 96.1
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 95.93
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 95.2
PRK03659601 glutathione-regulated potassium-efflux system prot 94.92
PRK03562621 glutathione-regulated potassium-efflux system prot 94.87
PRK10669558 putative cation:proton antiport protein; Provision 94.77
TIGR00698335 conserved hypothetical integral membrane protein. 93.48
PF03956191 DUF340: Membrane protein of unknown function (DUF3 93.19
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 93.12
COG2855334 Predicted membrane protein [Function unknown] 93.04
PLN03159832 cation/H(+) antiporter 15; Provisional 92.91
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 92.86
COG0385319 Predicted Na+-dependent transporter [General funct 92.36
COG2431297 Predicted membrane protein [Function unknown] 91.81
COG0475397 KefB Kef-type K+ transport systems, membrane compo 91.58
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 91.31
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 90.88
PF05982327 DUF897: Domain of unknown function (DUF897) ; Inte 90.33
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 90.28
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 87.57
PRK03818552 putative transporter; Validated 87.43
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 86.88
KOG3826252 consensus Na+/H+ antiporter [Inorganic ion transpo 86.37
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 85.98
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 85.18
PF03390414 2HCT: 2-hydroxycarboxylate transporter family; Int 83.6
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 83.38
COG0798342 ACR3 Arsenite efflux pump ACR3 and related permeas 83.19
TIGR00841286 bass bile acid transporter. Functionally character 80.94
PRK04972558 putative transporter; Provisional 80.58
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 80.44
COG3493438 CitS Na+/citrate symporter [Energy production and 80.28
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-81  Score=647.80  Aligned_cols=502  Identities=45%  Similarity=0.682  Sum_probs=428.7

Q ss_pred             cccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHhcCCCcc---cccccChhHH
Q 009645            8 VSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTR--WMNQSVTALAFGLCTATVIILTTNGKIS---DILLFDEDLF   82 (530)
Q Consensus         8 ~~~~~~~~~~~~~~~i~~~~~ll~~~~~~~~l~~~~~--~lp~~~~~ll~Gil~G~~~~~~~~~~~~---~~~~~~~~~~   82 (530)
                      ......++||++.+++++++.+|++|++.+|+++++|  ++||++..+++|+++|.++++...++.+   +...++||.|
T Consensus        22 ~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~f  101 (575)
T KOG1965|consen   22 SDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLF  101 (575)
T ss_pred             cccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHH
Confidence            3344466789999999999999999999999999765  8999999999999999999998888877   6778999999


Q ss_pred             HHHhhHHHhhhhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhcccccccHHHHH
Q 009645           83 FICLLPPIIFNAGFQVKKKQFFQNFIIINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAILSATDTVCTL  162 (530)
Q Consensus        83 ~~i~L~~ilF~aG~~l~~~~~~~~~~~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGailsaTdpv~v~  162 (530)
                      +.++||||+|++||++++++|+||+.+++.++++||++++.+++.+++++.......++++.+|+++||++||||||+|+
T Consensus       102 f~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvL  181 (575)
T KOG1965|consen  102 FLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVL  181 (575)
T ss_pred             HHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHH
Confidence            99999999999999999999999999999999999999999999999988554444589999999999999999999999


Q ss_pred             HHhcccCC-chhhhhhhhhhhhhhHHHHHHHHHHHHHhh-ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009645          163 QVLNQEDT-PLLYSLVFGEGVVNDATSIVLFNAIQKFSV-HVTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELY  240 (530)
Q Consensus       163 ~il~~~~~-~~l~~ll~gEs~lND~~aivlf~~~~~~~~-~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~~~~~~~~~~~  240 (530)
                      +|++|+++ |++|++++|||++|||++||+|++++.+.. +.+.....+.++.|++.+.+|+.+|++.|.+.++++|+++
T Consensus       182 aIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~  261 (575)
T KOG1965|consen  182 AIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLY  261 (575)
T ss_pred             HHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999997 589999999999999999999999999876 4444455678999999999999999999999999999998


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhhhhhhhhhccc
Q 009645          241 FGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLSFISETFIFLYVGMD  320 (530)
Q Consensus       241 ~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~Fv~~G~~  320 (530)
                      . ++.+..|.+++++++|.+|++||.+|+|||+++++||++|+||+++|.++++|.++||+|+++++++|+++|.|+|+.
T Consensus       262 l-~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~  340 (575)
T KOG1965|consen  262 L-RRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLS  340 (575)
T ss_pred             h-cCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            7 488999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCCCccceeeeEecCCchhhHHHHhhcc
Q 009645          321 ALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLANDSP-IDKIGFKQQVTIWWAGLMRGAVSVALAYN  399 (530)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~Gl~RGava~aLa~~  399 (530)
                      +...++|.+.      .+.+.....++++++|++.++|++++.|+.||.+ .++++.|+|.+|||+|++|||+++|||..
T Consensus       341 ~f~~~k~~~~------~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~  414 (575)
T KOG1965|consen  341 AFDFQKHVYK------SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALG  414 (575)
T ss_pred             Hhcccceeee------chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhh
Confidence            9888877653      2344556677899999999999999999998754 56699999999999995599999999997


Q ss_pred             ccccCCCCCCcchhHHHHHHHhhhhHhhhhhhhhHHHHHHHhCCCCCCCcCCCC--------------CCC------ccc
Q 009645          400 KFTSSGHTQRPKNAIMITSTITIVLFSNVVFGLLTKPLVRLMLQPREESSEISS--------------PKS------SSA  459 (530)
Q Consensus       400 ~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~--------------~~~------~~i  459 (530)
                      ...+.+++   .++++.++|+.+|++|+++.|.++.|+++++.++.++..++++              +++      +..
T Consensus       415 ~~~~~~~~---~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~  491 (575)
T KOG1965|consen  415 DFTDSPHT---GGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAADEVDESWRLEPGVEFYLVTKLGVLSLTSSA  491 (575)
T ss_pred             hccccccc---cccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccccccccchhhhcccccccccccccccccccccc
Confidence            64433221   5689999999999999999999999999999987655442110              000      001


Q ss_pred             cccccccc--ccccccccCCCCCCCCCCCCccchhccCCccccchhHhhhcccccccccCCCCCCC
Q 009645          460 LLPLLANG--QDLASELDSVGGGISIRRPSSLTMLITKPTSTVHYYWRKFDNAVMRPIFGGGGEES  523 (530)
Q Consensus       460 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~d~~~~~p~~~~~~~~~  523 (530)
                      +.+.....  ..-+|+..    .+..+++.+.+....++++..|.+||++|+..+++.++++|.++
T Consensus       492 ~i~~~~~~~~~~~~e~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (575)
T KOG1965|consen  492 YITILQLRQAELFDEPTR----SSDSRFLLSLGFFQLTYTSLTHLYGRIFSRTSMRHIFGQRGLVP  553 (575)
T ss_pred             CcchhhhhhhhhccccCC----ccCccccccccceeeeecccccccccccCcchhcccccccCccc
Confidence            11111110  11112211    22334556677788899999999999999999999999965443

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>COG2431 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>COG3493 CitS Na+/citrate symporter [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2k3c_A33 TMIX peptide; membrane peptide, dodecylphosphochol 4e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 59/389 (15%), Positives = 104/389 (26%), Gaps = 109/389 (28%)

Query: 2   SLKLDSVSTLLNEPDAAPVHSVTLFVALVSACIVIGHLLQKTR-----------WMNQSV 50
            L         +  D    HS  + + + S    +  LL+                 ++ 
Sbjct: 204 KLLYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 51  TALAFGLCTATVIILTTNGKISDILL---------------FDED----LFFICL----- 86
            A     C   +++ T   +++D L                   D    L    L     
Sbjct: 260 NAFNLS-CK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 87  -LPPIIFNAGFQVKKKQFFQNFIIINLF--GVVGTLISFGIISIGSAKLFMKFGLTFWDQ 143
            LP        +V            N     ++   I  G+ +              W  
Sbjct: 317 DLPR-------EVLT---------TNPRRLSIIAESIRDGLATW-----------DNWKH 349

Query: 144 GDFLALGAILSATDTVCTLQVLNQEDTPLLY-SL-VFGEGVVNDATSIVLFNAIQKFSVH 201
            +   L  I+ +     +L VL   +   ++  L VF         +I+L          
Sbjct: 350 VNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSVFPPSA--HIPTILL----SLIWFD 398

Query: 202 VTPDTVMQFTGSFLYLFSLSTLLGIAVGLMSAYIIRELYFG-RHSTDREVAL--MILMAY 258
           V    VM        L   S +        S   I  +Y   +   + E AL   I+   
Sbjct: 399 VIKSDVMVVVNK---LHKYSLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIVD-- 451

Query: 259 LSYVMADLFQLSGILTVFFCGIVMSHYTWH--NITESSRVTT-KHTFATLSFISETFIFL 315
             Y +   F    ++  +      SH   H  NI    R+T  +  F    F+ +     
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 316 YVGMDA--------LDMEKWK--IVKGSP 334
               +A          ++ +K  I    P
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDP 539
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Length = 33 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query530
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.4
2l0e_A33 Sodium/hydrogen exchanger 1; transmembrane helix, 98.31
2htg_A28 NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; 98.04
2k3c_A33 TMIX peptide; membrane peptide, dodecylphosphochol 97.77
1y4e_A27 Sodium/hydrogen exchanger 1; NHE1 isoform, transme 97.07
2kbv_A28 Sodium/hydrogen exchanger 1; transmembrane, peptid 96.95
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 91.89
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.40  E-value=1.1e-12  Score=133.75  Aligned_cols=302  Identities=13%  Similarity=0.108  Sum_probs=193.3

Q ss_pred             hHHHHHhhHHHhhhhhhcCChHHH----HHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHhccc
Q 009645           80 DLFFICLLPPIIFNAGFQVKKKQF----FQNFI--IINLFGVVGTLISFGIISIGSAKLFMKFGLTFWDQGDFLALGAIL  153 (530)
Q Consensus        80 ~~~~~i~L~~ilF~aG~~l~~~~~----~~~~~--~il~la~~g~~i~~~~~~~~~~~l~~~~~~~~l~~~~alllGail  153 (530)
                      +..-+.++.+.+|.+|+|+|.+.+    ++..+  .....|+.|+++++.+     |+.+      +....++.--+++.
T Consensus        61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip  129 (388)
T 1zcd_A           61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIP  129 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSS
T ss_pred             HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHH
Confidence            356678899999999999998866    44443  3577888898888654     3444      55556677889999


Q ss_pred             ccccHHHHHHHhcccC--Cc-hhhhhhhhhhhhhhHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 009645          154 SATDTVCTLQVLNQED--TP-LLYSLVFGEGVVNDATSIVLFNAIQKFSVHVTPDTVMQFTGSFLYLFSLSTLLGIAVGL  230 (530)
Q Consensus       154 saTdpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~G~~~G~  230 (530)
                      .+||.+.++.++...+  .| .++..+.+-+++||..++++..++.+     +..+.......          +.   ..
T Consensus       130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt-----~~~~~~~l~~~----------~~---~~  191 (388)
T 1zcd_A          130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT-----NDLSMASLGVA----------AV---AI  191 (388)
T ss_dssp             SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC-----CCCCHHHHHHH----------HH---HH
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCccHHHHHHH----------HH---HH
Confidence            9999999999999875  55 48899999999999999999887632     11121111100          11   11


Q ss_pred             HHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhcccccccccccchhHHHHHHHHHH-Hhh
Q 009645          231 MSAYIIRELYFGRHSTDREVALMILMAYLSYVMADLFQLSGILTVFFCGIVMSHYTWHNITESSRVTTKHTFATLS-FIS  309 (530)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~e~~l~l~~~~l~~~lae~lg~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~  309 (530)
                      ...+..+|.    +.+.....+  ......++.++..|++.++|.|++|+++.+..+++.  ...++.+|-.+.+. +++
T Consensus       192 ~~~~~l~r~----~v~~~~~y~--~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~--~~~~~le~~l~p~v~~~i  263 (388)
T 1zcd_A          192 AVLAVLNLC----GARRTGVYI--LVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGR--SPAKRLEHVLHPWVAYLI  263 (388)
T ss_dssp             HHHHHHHHT----TCCCTHHHH--HHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSS--CHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHh----cchhHHHHH--HHHHHHHHHHHHhCccHHHHHHHHHHhccCCCccCC--CHHHHHHHHHHHHHHHHH
Confidence            111233332    112222222  223466777899999999999999999997543221  22344555555544 688


Q ss_pred             hhhh-hhhhcccchhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCCCCccceeeeEe-cC
Q 009645          310 ETFI-FLYVGMDALDMEKWKIVKGSPGTSVAVSSTLLGLVLVGRAASVFSVSFLSNLAND-SPIDKIGFKQQVTIWW-AG  386 (530)
Q Consensus       310 ~~~~-Fv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-~G  386 (530)
                      -|+| |...|+++.....-...      . .....+.+..+++|.++++..+++..+.+. +.+++.+|+|..-++. +|
T Consensus       264 lPlFaFanaGv~l~~~~~~~l~------~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~g  336 (388)
T 1zcd_A          264 LPLFAFANAGVSLQGVTLDGLT------S-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCG  336 (388)
T ss_dssp             HHHHHHHHCCCCCSSSCCCTHH------H-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTT
T ss_pred             HHHHHHHhcCeeecccchhhcc------C-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhc
Confidence            9999 99999998542100000      0 011123345589999998888877644432 3466899999976655 56


Q ss_pred             CchhhHHHHhhccccccCCCCCCcchhHHHHHHHhhhhHhhhh
Q 009645          387 LMRGAVSVALAYNKFTSSGHTQRPKNAIMITSTITIVLFSNVV  429 (530)
Q Consensus       387 l~RGava~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v  429 (530)
                       .||.+++..+...+.+ +  ..+..+.....++...+.|+++
T Consensus       337 -igftmsL~Ia~laf~~-~--~~~~~~~ak~~il~~s~~s~i~  375 (388)
T 1zcd_A          337 -IGFTMSIFIASLAFGS-V--DPELINWAKLGILVGSISSAVI  375 (388)
T ss_dssp             -CCHHHHHHHHHHHSTT-S--SCSSHHHHHHHHHHHHHTTTST
T ss_pred             -cchHHHHHHHHHhccC-C--chhhHhhHHHHHHHHHHHHHHH
Confidence             5899999988765431 1  1111233345555555566555
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Back     alignment and structure
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic} Back     alignment and structure
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Back     alignment and structure
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens} Back     alignment and structure
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic} Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00