Citrus Sinensis ID: 012936

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
MRRNLKDWILAPRYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKDEGGQQ
ccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccEEEEEEEEccccEEEccccccEEEEEccccccccccccccccEEEEEcccccccEEEccccccEEEEccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccc
ccccHHHHHHcccccEcccccccHcHccccccccccccEEEEEcccccEEEccHccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEccccEEEEEcccccEEEEEEcccccccccccEEEEEEEccccccccEEEEEcHHHcEEEEEEccccccccccccccEEEEEEccccEEEEcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccHHccccccccccccHcHccccccHHHHHHHHHHHHHccccccc
mrrnlkdwilaprycvlgenisgfgsngllrlknpcgstevllfprgcrwfstqaavepstsdgltvdgiVASQWTildesegdwKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAelnkpnlwddpvhagrisrehgslmGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDAllsgeldpcscyievqagaggtesMDWASMVLQMYKSWAQRRGYRVtlmdempgeIAGIKRATIKVDGEYAFGYakaevgvhrlvrispfdsgkrrhtSFAAVAvipnsgdssthvqinesDLRIErfrsggaggqhanttdsavriihiptgitatcQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEhtqsltdiswgnqirtyvlHPYRMVKDLrtnyevsdpdsvlegdlDGFILSYLSAsldkdeggqq
mrrnlkdwilaprYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAavepstsdgltvDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAelnkpnlwddpVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDAllsgeldpcSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYakaevgvhRLVRIspfdsgkrrHTSFAAVavipnsgdssthvQINESDLRIERFRSggaggqhanttdsavRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTqsltdiswgnqIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLsasldkdeggqq
MRRNLKDWILAPRYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTelelesleallTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKDEGGQQ
****LKDWILAPRYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRI*************VKAFEQELLEHIDMIKL******************************ALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVI************************************SAVRIIHIPTGITATC**************************************SLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLS***********
******D*ILAPRYCVLGENISGFGSNGL*****PCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVDGIVASQWTILDES*GDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVH************GKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQ********************SWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSY*************
MRRNLKDWILAPRYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSG********TTDSAVRIIHIPTGITATCQ*************GVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASL********
*RRNLKDWILAPRYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLD*******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRRNLKDWILAPRYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKDEGGQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query453 2.2.26 [Sep-21-2011]
Q1GIB5374 Peptide chain release fac yes no 0.770 0.933 0.480 3e-93
Q2W3F8371 Peptide chain release fac yes no 0.783 0.956 0.486 3e-92
Q165J6374 Peptide chain release fac yes no 0.768 0.930 0.485 3e-91
C5CGS4370 Peptide chain release fac yes no 0.763 0.935 0.484 5e-89
O67695373 Peptide chain release fac yes no 0.796 0.967 0.438 2e-87
Q2L224367 Peptide chain release fac yes no 0.770 0.950 0.458 3e-87
B4EDB1367 Peptide chain release fac yes no 0.752 0.929 0.463 8e-87
B2V5M0369 Peptide chain release fac yes no 0.812 0.997 0.446 2e-86
B4RCR3369 Peptide chain release fac yes no 0.746 0.915 0.478 3e-86
Q9A752371 Peptide chain release fac yes no 0.746 0.911 0.472 1e-85
>sp|Q1GIB5|RF2_RUEST Peptide chain release factor 2 OS=Ruegeria sp. (strain TM1040) GN=prfB PE=3 SV=1 Back     alignment and function desciption
 Score =  342 bits (877), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 170/354 (48%), Positives = 242/354 (68%), Gaps = 5/354 (1%)

Query: 90  AAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVK 149
           A I +S+ ++ +R+ W+    RL   +A +  PNLWDDP  A ++ R+  SL+  M   K
Sbjct: 10  ADIEKSLDLLAQRMNWETAEFRLEEFNARVEDPNLWDDPAAAQKLMRDRQSLVDAMDTYK 69

Query: 150 AFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIE 209
           +  Q+L + +++I+L   E D E+  ++ + L  ++ K+ +KEL+ALL GE DP   ++E
Sbjct: 70  SIRQDLQDSVELIELGEMEEDAEVVKDAEDTLKALKEKAAQKELEALLDGETDPNDAFLE 129

Query: 210 VQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGY 269
           ++AGAGGTE+ DWASM+ +MY  WA+ RG+ V L +E  G  AGIK AT ++ G  A+G+
Sbjct: 130 IKAGAGGTEACDWASMLARMYVRWAESRGFSVELQEEQAGAEAGIKSATYQIKGHNAYGW 189

Query: 270 AKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAG 329
            K+E G HRLVRISPF  G  R TSFAAV   P   D +  +++N +D+RI+ +RS GAG
Sbjct: 190 LKSESGTHRLVRISPFGKGT-RETSFAAVGAYPVI-DDNIEIEVNPADIRIDTYRSSGAG 247

Query: 330 GQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQ-AQMNAE 388
           GQH NTTDSAVRI H PTGI  T  +E+SQHQN+  AM  L+SR+ QLE+ R+ A++NA 
Sbjct: 248 GQHVNTTDSAVRITHEPTGIVVTS-SEKSQHQNRDIAMKALKSRLYQLELDRRNAEVNAL 306

Query: 389 HTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLS 442
           H ++  D  WGNQIR+YV+ PY+MVKDLRTN+E +D   VL+GDLDGF+ + L+
Sbjct: 307 H-EAKGDAGWGNQIRSYVMQPYQMVKDLRTNHETADTKGVLDGDLDGFMAATLA 359
Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
Silicibacter sp. (strain TM1040) (taxid: 292414)
>sp|Q2W3F8|RF2_MAGSA Peptide chain release factor 2 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q165J6|RF2_ROSDO Peptide chain release factor 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|C5CGS4|RF2_KOSOT Peptide chain release factor 2 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q2L224|RF2_BORA1 Peptide chain release factor 2 OS=Bordetella avium (strain 197N) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|B4EDB1|RF2_BURCJ Peptide chain release factor 2 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|B2V5M0|RF2_SULSY Peptide chain release factor 2 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|B4RCR3|RF2_PHEZH Peptide chain release factor 2 OS=Phenylobacterium zucineum (strain HLK1) GN=prfB PE=3 SV=1 Back     alignment and function description
>sp|Q9A752|RF2_CAUCR Peptide chain release factor 2 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=prfB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
296089769472 unnamed protein product [Vitis vinifera] 0.975 0.936 0.805 0.0
255542882550 peptide chain release factor, putative [ 0.966 0.796 0.800 0.0
225450605434 PREDICTED: peptide chain release factor 0.949 0.990 0.816 0.0
147834602426 hypothetical protein VITISV_010541 [Viti 0.920 0.978 0.834 0.0
449523704472 PREDICTED: peptide chain release factor 0.964 0.925 0.783 0.0
449435599467 PREDICTED: peptide chain release factor 0.902 0.875 0.821 0.0
224125026488 predicted protein [Populus trichocarpa] 0.880 0.817 0.842 0.0
356571075466 PREDICTED: peptide chain release factor 0.863 0.839 0.836 0.0
12323033426 peptide chain release factor 2, putative 0.896 0.953 0.805 0.0
42562784482 Peptide chain release factor 2 [Arabidop 0.896 0.842 0.805 0.0
>gi|296089769|emb|CBI39588.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/442 (80%), Positives = 394/442 (89%)

Query: 9   ILAPRYCVLGENISGFGSNGLLRLKNPCGSTEVLLFPRGCRWFSTQAAVEPSTSDGLTVD 68
           +L   Y  LG+N++GF S  +    NP G  +V    R  R F +QAA E STSDGLTV+
Sbjct: 27  VLCSGYGFLGKNMTGFSSVMMETSINPSGFHQVSGNSRWVRQFGSQAAAEASTSDGLTVE 86

Query: 69  GIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDP 128
           GI+A+QW ILDESE DWKSHAAAIA SI +IKKRLQWK L VRL++LSA+LNKP+LWD+P
Sbjct: 87  GIIANQWPILDESESDWKSHAAAIALSIHLIKKRLQWKKLVVRLDVLSAQLNKPDLWDNP 146

Query: 129 VHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKS 188
           VHAG+ISREHG LMGKMK VK  EQELLEHIDM+KLAREEND ELE ESL+ALL MRR S
Sbjct: 147 VHAGKISREHGMLMGKMKGVKNLEQELLEHIDMVKLAREENDPELESESLKALLGMRRNS 206

Query: 189 KEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMP 248
           KEKEL+ALL+G+ D CSCYIEVQAGAGGTESMDWA+MV+QMYK WAQRRGY VT++DEMP
Sbjct: 207 KEKELEALLAGDHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKMWAQRRGYGVTVVDEMP 266

Query: 249 GEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSS 308
           GE AGIKRATIKVDGEY+FGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIP  GD+S
Sbjct: 267 GETAGIKRATIKVDGEYSFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDAS 326

Query: 309 THVQINESDLRIERFRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMG 368
           +HVQINESDLRIERFR+GGAGGQH NTT+SAVRI+HIPTG+TATCQNERSQHQNKASAM 
Sbjct: 327 SHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMA 386

Query: 369 VLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSV 428
           VLQSR++QLEI+RQAQ+NA+HTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSV
Sbjct: 387 VLQSRLDQLEISRQAQINAQHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSV 446

Query: 429 LEGDLDGFILSYLSASLDKDEG 450
           LEGDLDGFILSYLSASLDKDEG
Sbjct: 447 LEGDLDGFILSYLSASLDKDEG 468

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542882|ref|XP_002512504.1| peptide chain release factor, putative [Ricinus communis] gi|223548465|gb|EEF49956.1| peptide chain release factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225450605|ref|XP_002277995.1| PREDICTED: peptide chain release factor 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147834602|emb|CAN69654.1| hypothetical protein VITISV_010541 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449523704|ref|XP_004168863.1| PREDICTED: peptide chain release factor 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449435599|ref|XP_004135582.1| PREDICTED: peptide chain release factor 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224125026|ref|XP_002319484.1| predicted protein [Populus trichocarpa] gi|222857860|gb|EEE95407.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356571075|ref|XP_003553706.1| PREDICTED: peptide chain release factor 2-like [Glycine max] Back     alignment and taxonomy information
>gi|12323033|gb|AAG51510.1|AC058785_13 peptide chain release factor 2, putative [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42562784|ref|NP_176032.2| Peptide chain release factor 2 [Arabidopsis thaliana] gi|332195261|gb|AEE33382.1| Peptide chain release factor 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
TAIR|locus:2010748482 AT1G56350 [Arabidopsis thalian 0.896 0.842 0.788 2.1e-171
TIGR_CMR|SPO_2585375 SPO_2585 "peptide chain releas 0.768 0.928 0.474 3.8e-85
TIGR_CMR|NSE_0604365 NSE_0604 "peptide chain releas 0.768 0.953 0.432 1.6e-77
TIGR_CMR|ECH_0705366 ECH_0705 "peptide chain releas 0.779 0.964 0.421 3.1e-76
TIGR_CMR|GSU_2278372 GSU_2278 "peptide chain releas 0.719 0.876 0.449 6.3e-76
UNIPROTKB|P07012365 prfB [Escherichia coli K-12 (t 0.777 0.964 0.420 8.1e-76
TIGR_CMR|CHY_0163371 CHY_0163 "peptide chain releas 0.807 0.986 0.407 1.6e-72
TIGR_CMR|APH_0479376 APH_0479 "peptide chain releas 0.783 0.944 0.402 4.1e-72
UNIPROTKB|P66026371 prfB "Peptide chain release fa 0.774 0.946 0.416 2.3e-71
UNIPROTKB|Q3Z8Y6362 prfB "Peptide chain release fa 0.746 0.933 0.417 7.7e-71
TAIR|locus:2010748 AT1G56350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1666 (591.5 bits), Expect = 2.1e-171, P = 2.1e-171
 Identities = 320/406 (78%), Positives = 357/406 (87%)

Query:    44 FPRGCRWFSTQAAVEPSTSDGLTVDGIVASQWTILDESEGDWKSHAAAIAQSIQVIKKRL 103
             F    R  S++A    +T DGLTV+ I+A+QW ILDE+EGDWKSHAAAIAQSIQVIK+RL
Sbjct:    74 FASSTRSLSSEAVAVAATCDGLTVERIIANQWPILDENEGDWKSHAAAIAQSIQVIKRRL 133

Query:   104 QWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIK 163
             QWK L VRL +LSAELNK +LWDDP HAG+ISREHGSL GKMK V  FE+ELLEHIDM+K
Sbjct:   134 QWKKLLVRLKVLSAELNKSDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLK 193

Query:   164 LAREENDTXXXXXXXXXXXTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWA 223
             LA+EEND+            MRR SKEKEL+ALLS + DPCSCYIEVQAGAGGTES DWA
Sbjct:   194 LAKEENDSELESETLKALIDMRRVSKEKELEALLSADNDPCSCYIEVQAGAGGTESNDWA 253

Query:   224 SMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRIS 283
             +MV++MYK+WAQRR + VT++DE PGEIAGIKRATIKV+GEYA+GYAKAEVGVHRLVRIS
Sbjct:   254 AMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLVRIS 313

Query:   284 PFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAVRII 343
             PFDSGKRRHTSFAAVAVIP  GD ST V+IN+SDLRIERFRSGGAGGQHANTTDSAVRI+
Sbjct:   314 PFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIV 373

Query:   344 HIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIR 403
             HIPTGITATCQNERSQH NKASAM VLQSR++QLE+ARQ  MNA+HTQSLT+ISWGNQIR
Sbjct:   374 HIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEISWGNQIR 433

Query:   404 TYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKDE 449
             TYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILS+LS+SLDKD+
Sbjct:   434 TYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSFLSSSLDKDD 479
GO:0003747 "translation release factor activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006415 "translational termination" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016149 "translation release factor activity, codon specific" evidence=IEA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051301 "cell division" evidence=RCA
TIGR_CMR|SPO_2585 SPO_2585 "peptide chain release factor 2" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0604 NSE_0604 "peptide chain release factor 2, programmed frameshift" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0705 ECH_0705 "peptide chain release factor 2, programmed frameshift" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2278 GSU_2278 "peptide chain release factor 2, programmed frameshift" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P07012 prfB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0163 CHY_0163 "peptide chain release factor 2, programmed frameshift" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0479 APH_0479 "peptide chain release factor 2, programmed frameshift" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
UNIPROTKB|P66026 prfB "Peptide chain release factor 2" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q3Z8Y6 prfB "Peptide chain release factor 2" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B2V5M0RF2_SULSYNo assigned EC number0.44680.81230.9972yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
PRK00578367 PRK00578, prfB, peptide chain release factor 2; Va 1e-169
TIGR00020364 TIGR00020, prfB, peptide chain release factor 2 1e-143
PRK07342339 PRK07342, PRK07342, peptide chain release factor 2 1e-122
COG1186239 COG1186, PrfB, Protein chain release factor B [Tra 1e-115
PRK05589325 PRK05589, PRK05589, peptide chain release factor 2 1e-108
PRK08787313 PRK08787, PRK08787, peptide chain release factor 2 3e-89
PRK06746326 PRK06746, PRK06746, peptide chain release factor 2 1e-86
PRK00591359 PRK00591, prfA, peptide chain release factor 1; Va 2e-81
COG0216363 COG0216, PrfA, Protein chain release factor A [Tra 7e-80
TIGR00019360 TIGR00019, prfA, peptide chain release factor 1 4e-78
pfam00472114 pfam00472, RF-1, RF-1 domain 3e-44
smart00937116 smart00937, PCRF, This domain is found in peptide 2e-38
pfam03462115 pfam03462, PCRF, PCRF domain 5e-38
TIGR03072200 TIGR03072, release_prfH, putative peptide chain re 3e-33
PRK08179200 PRK08179, prfH, peptide chain release factor-like 4e-29
PRK09256138 PRK09256, PRK09256, hypothetical protein; Provisio 1e-05
>gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated Back     alignment and domain information 
 Score =  480 bits (1239), Expect = e-169
 Identities = 175/365 (47%), Positives = 238/365 (65%), Gaps = 1/365 (0%)

Query: 84  DWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMG 143
           +       + + ++ I+  L    L  RL  L AE   P+ W+D   A ++++E  SL  
Sbjct: 4   EISERLKDLDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKA 63

Query: 144 KMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDP 203
           K+  ++   Q L +  ++++LA EE+D E   E+   L  + +K    EL+ LLSGE D 
Sbjct: 64  KLDTLEELRQRLDDLEELLELAEEEDDEETLAEAEAELKALEKKLAALELERLLSGEYDA 123

Query: 204 CSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDG 263
            +  + + AGAGGTE+ DWASM+L+MY  WA+R G++V ++D   GE AGIK AT K+ G
Sbjct: 124 NNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATFKIKG 183

Query: 264 EYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERF 323
            YA+GY K+E GVHRLVRISPFDS  RRHTSFA+V V P   D +  ++IN  DLRI+ +
Sbjct: 184 PYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEV-DDTIEIEINPKDLRIDTY 242

Query: 324 RSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQA 383
           RS GAGGQH N TDSAVRI HIPTGI   CQNERSQHQNKASAM +L++++ +LE+ ++A
Sbjct: 243 RSSGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRA 302

Query: 384 QMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSA 443
                      +I WG+QIR+YVLHPY+MVKDLRT YE  +  +VL+GDLDGFI +YL  
Sbjct: 303 AEKDALKGEKKEIGWGSQIRSYVLHPYQMVKDLRTGYETGNTQAVLDGDLDGFIEAYLRW 362

Query: 444 SLDKD 448
              + 
Sbjct: 363 RASQK 367

Length = 367
>gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 Back     alignment and domain information
>gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional Back     alignment and domain information
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated Back     alignment and domain information
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 Back     alignment and domain information
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain Back     alignment and domain information
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors Back     alignment and domain information
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain Back     alignment and domain information
>gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H Back     alignment and domain information
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 453
COG0216363 PrfA Protein chain release factor A [Translation, 100.0
TIGR00020364 prfB peptide chain release factor 2. In many but n 100.0
PRK00578367 prfB peptide chain release factor 2; Validated 100.0
PRK06746326 peptide chain release factor 2; Provisional 100.0
PRK07342339 peptide chain release factor 2; Provisional 100.0
PRK05589325 peptide chain release factor 2; Provisional 100.0
TIGR00019360 prfA peptide chain release factor 1. This model de 100.0
PRK00591359 prfA peptide chain release factor 1; Validated 100.0
PRK08787313 peptide chain release factor 2; Provisional 100.0
KOG2726386 consensus Mitochondrial polypeptide chain release 100.0
COG1186239 PrfB Protein chain release factor B [Translation, 100.0
TIGR03072200 release_prfH putative peptide chain release factor 100.0
PRK08179200 prfH peptide chain release factor-like protein; Re 100.0
PF00472113 RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha 100.0
PF03462115 PCRF: PCRF domain; InterPro: IPR005139 This domain 99.96
PRK09256138 hypothetical protein; Provisional 99.84
KOG3429172 consensus Predicted peptidyl-tRNA hydrolase [Trans 99.5
PRK10636638 putative ABC transporter ATP-binding protein; Prov 89.19
PRK11147635 ABC transporter ATPase component; Reviewed 82.3
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-111  Score=838.51  Aligned_cols=338  Identities=35%  Similarity=0.539  Sum_probs=319.2

Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 012936          105 WKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTM  184 (453)
Q Consensus       105 ~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~ELa~eE~D~El~~e~~~el~~~  184 (453)
                      ++.+..++++|+.+|++|++.+|++++++++||++.|++++..|++|++..+++.++.+|+.++.|+||.+++.+|+..+
T Consensus         9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~   88 (363)
T COG0216           9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL   88 (363)
T ss_pred             HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            36777899999999999999999999999999999999999999999999999999999999889999999999999988


Q ss_pred             HHHh--hHHHHHhcC--CCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEEEeccCCCCCCeeEEEEE
Q 012936          185 RRKS--KEKELDALL--SGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIK  260 (453)
Q Consensus       185 ~~~~--~~~el~~LL--~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~eiv~~~~~~~~Giksa~l~  260 (453)
                      +..+  .+.+|+.||  +||+|++|||||||||+||+||++||++|||||.+||+.+||++++++.++++.||||++++.
T Consensus        89 ~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~GG~kEii~~  168 (363)
T COG0216          89 EAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIAS  168 (363)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCCCceEEEEE
Confidence            7765  466677655  699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEeecCCCCCccccccCceE
Q 012936          261 VDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTDSAV  340 (453)
Q Consensus       261 i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaV  340 (453)
                      |+|.+||+.||||+|||||||||.|+++||+|||+|+|+|||++++ ..+|+|+|+||+|+|||||||||||||||+|||
T Consensus       169 I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee-~~ei~I~~~DlrIDt~RsSGaGGQhVNtTdSAV  247 (363)
T COG0216         169 ISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEE-VEEIEINPKDLRIDTFRSSGAGGQHVNTTDSAV  247 (363)
T ss_pred             EeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCc-ccccccChHHceeeeeecCCCCCCCcCccchhh
Confidence            9999999999999999999999999999999999999999999965 357999999999999999999999999999999


Q ss_pred             EEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCccCcceeeecCCCcccceeccc
Q 012936          341 RIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQ-SLTDISWGNQIRTYVLHPYRMVKDLRTN  419 (453)
Q Consensus       341 ri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~-~~~~~~rg~~IRtYn~~p~~~VtDhRt~  419 (453)
                      ||||+||||||+||++||||+||++||++|++||++++.++++++.+..|+ +.+.++||++|||||| ||+||||||||
T Consensus       248 RiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNf-PQnRVTDHRI~  326 (363)
T COG0216         248 RITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNF-PQNRVTDHRIN  326 (363)
T ss_pred             eeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCC-CCCcccchhcc
Confidence            999999999999999999999999999999999999998887776666555 4578999999999999 99999999999


Q ss_pred             ceecCcccccC-CCcHHHHHHHHHcc
Q 012936          420 YEVSDPDSVLE-GDLDGFILSYLSAS  444 (453)
Q Consensus       420 ~~~~~l~~vld-GdLD~fI~a~l~~~  444 (453)
                      +|+|+|+.||+ |+||++|++++.+.
T Consensus       327 lTl~kLd~vm~gG~LDeii~aLi~~~  352 (363)
T COG0216         327 LTLYKLDEVMEGGKLDEIIDALIAED  352 (363)
T ss_pred             cccccHHHHhccCcHHHHHHHHHHHH
Confidence            99999999999 59999999998764

>TIGR00020 prfB peptide chain release factor 2 Back     alignment and domain information
>PRK00578 prfB peptide chain release factor 2; Validated Back     alignment and domain information
>PRK06746 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK07342 peptide chain release factor 2; Provisional Back     alignment and domain information
>PRK05589 peptide chain release factor 2; Provisional Back     alignment and domain information
>TIGR00019 prfA peptide chain release factor 1 Back     alignment and domain information
>PRK00591 prfA peptide chain release factor 1; Validated Back     alignment and domain information
>PRK08787 peptide chain release factor 2; Provisional Back     alignment and domain information
>KOG2726 consensus Mitochondrial polypeptide chain release factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03072 release_prfH putative peptide chain release factor H Back     alignment and domain information
>PRK08179 prfH peptide chain release factor-like protein; Reviewed Back     alignment and domain information
>PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] Back     alignment and domain information
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors Back     alignment and domain information
>PRK09256 hypothetical protein; Provisional Back     alignment and domain information
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
1ml5_Z365 Structure Of The E. Coli Ribosomal Termination Comp 3e-82
1mi6_A365 Docking Of The Modified Rf2 X-Ray Structure Into Th 8e-82
1gqe_A365 Polypeptide Chain Release Factor 2 (Rf2) From Esche 3e-78
2b9m_Y365 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 2e-57
2wh1_Y351 Insights Into Translational Termination From The St 4e-57
2x9r_Y351 Structure Of The 70s Ribosome Bound To Release Fact 5e-57
2ihr_1365 Rf2 Of Thermus Thermophilus Length = 365 2e-56
3f1e_X378 Crystal Structure Of A Translation Termination Comp 3e-56
2b3t_B360 Molecular Basis For Bacterial Class 1 Release Facto 1e-44
2fvo_A333 Docking Of The Modified Rf1 X-ray Structure Into Th 7e-43
1rq0_A342 Crystal Structure Of Peptide Releasing Factor 1 Len 7e-43
2b64_Y354 30s Ribosomal Subunit, Trnas, Mrna And Release Fact 8e-39
1zbt_A371 Crystal Structure Of Peptide Chain Release Factor 1 4e-27
2rsm_A115 Solution Structure And Sirna-Mediated Knockdown Ana 3e-07
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (772), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 149/348 (42%), Positives = 220/348 (63%), Gaps = 2/348 (0%)
Query: 98  VIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLE 157
           V++  L +     RL  ++AEL +P++W++P  A  + +E  SL   +  +   +Q L +
Sbjct: 20  VLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLED 79
Query: 158 HIDMIKLAREENDTXXXXXXXXXXXTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGT 217
              +++LA E +D             +  K  + E   + SGE D   CY+++QAG+GGT
Sbjct: 80  VSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGT 139
Query: 218 ESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVH 277
           E+ DWASM+ +MY  WA+ RG++  +++E  GE+AGIK  TIK+ G+YA+G+ + E GVH
Sbjct: 140 EAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVH 199
Query: 278 RLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRSGGAGGQHANTTD 337
           RLVR SPFDSG RRHTSF++  V P   D    ++IN +DLRI+ +R+ GAGGQH N T+
Sbjct: 200 RLVRKSPFDSGGRRHTSFSSAFVYPEV-DDDIDIEINPADLRIDVYRTSGAGGQHVNRTE 258
Query: 338 SAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDIS 397
           SAVRI HIPTGI   CQN+RSQH+NK  AM  +++++ +LE+ ++         + +DI 
Sbjct: 259 SAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIG 318
Query: 398 WGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASL 445
           WG+QIR+YVL   R +KDLRT  E  +  +VL+G LD FI + L A L
Sbjct: 319 WGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL 365
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Back     alignment and structure
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Back     alignment and structure
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Back     alignment and structure
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 Back     alignment and structure
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Back     alignment and structure
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Back     alignment and structure
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 Back     alignment and structure
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Back     alignment and structure
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 Back     alignment and structure
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 Back     alignment and structure
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 Back     alignment and structure
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Back     alignment and structure
>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 1e-174
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 1e-172
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 2e-81
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 3e-81
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 8e-81
2b3t_B360 RF-1, peptide chain release factor 1; translation 2e-80
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 8e-45
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 2e-23
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 1e-15
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 Back     alignment and structure
 Score =  491 bits (1266), Expect = e-174
 Identities = 150/362 (41%), Positives = 227/362 (62%), Gaps = 2/362 (0%)

Query: 84  DWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMG 143
              +    + +   V++  L +     RL  ++AEL +P++W++P  A  + +E  SL  
Sbjct: 6   PVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEA 65

Query: 144 KMKEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDP 203
            +  +   +Q L +   +++LA E +D E   E++  L  +  K  + E   + SGE D 
Sbjct: 66  VVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDS 125

Query: 204 CSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDG 263
             CY+++QAG+GGTE+ DWASM+ +MY  WA+ RG++  +++E  GE+AGIK  TIK+ G
Sbjct: 126 ADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISG 185

Query: 264 EYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERF 323
           +YA+G+ + E GVHRLVR SPFDSG RRHTSF++  V P   D    ++IN +DLRI+ +
Sbjct: 186 DYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEV-DDDIDIEINPADLRIDVY 244

Query: 324 RSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQA 383
           R+ GAGGQH N T+SAVRI HIPTGI   CQN+RSQH+NK  AM  +++++ ++E+ ++ 
Sbjct: 245 RASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKN 304

Query: 384 QMNAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSA 443
                   + +DI WG+QIR+YVL     +KDLRT  E  +  +VL+G LD FI + L A
Sbjct: 305 AEKQAMEDNKSDIGWGSQIRSYVLDDS-RIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363

Query: 444 SL 445
            L
Sbjct: 364 GL 365
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
1gqe_A365 Release factor 2, RF2; protein synthesis, ribosome 100.0
2ihr_1365 Peptide chain release factor 2; mixed alpha-beta, 100.0
1zbt_A371 RF-1, peptide chain release factor 1; peptide chai 100.0
3d5a_X354 RF1, peptide chain release factor 1; ribosome, rib 100.0
2b3t_B360 RF-1, peptide chain release factor 1; translation 100.0
1rq0_A342 RF-1, peptide chain release factor 1; X-RAY, cryst 100.0
2rsm_A115 Probable peptide chain release factor C12ORF65 HO 100.0
1j26_A112 Immature colon carcinoma transcript 1; peptide cha 99.92
2jva_A108 Peptidyl-tRNA hydrolase domain protein; GFT hydrol 99.92
4dh9_Y140 YAEJ; ribosome, YAEJ, ribosome stalling, ribosome 99.88
2lw1_A89 ABC transporter ATP-binding protein UUP; ABC REG s 95.92
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Back     alignment and structure
Probab=100.00  E-value=1.6e-113  Score=871.70  Aligned_cols=360  Identities=42%  Similarity=0.752  Sum_probs=348.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 012936           83 GDWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMI  162 (453)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~  162 (453)
                      .+++..++.+..++..++.+||++.+..++++|+.+|++|+||+||+++++++||++.|+++++.|++|++.++|+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~   84 (365)
T 1gqe_A            5 NPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLL   84 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEE
Q 012936          163 KLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVT  242 (453)
Q Consensus       163 ELa~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~e  242 (453)
                      +|++++.|++|.+++.+++..++..+.+.|++.||+||+|.+||||||+||+||+||++||+||||||++||+++||+++
T Consensus        85 el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~e  164 (365)
T 1gqe_A           85 ELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTE  164 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence            99988889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEE
Q 012936          243 LMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIER  322 (453)
Q Consensus       243 iv~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~  322 (453)
                      +++.++|+.+|||+|++.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|++++ ++++.|+++||+|+|
T Consensus       165 vl~~~~~e~~G~Ks~~~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~-~v~i~i~~~dl~~~~  243 (365)
T 1gqe_A          165 IIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPADLRIDV  243 (365)
T ss_dssp             EEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGGGEEEEE
T ss_pred             EEecCCCCCCceeEEEEEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCc-ccccccCHHHceEee
Confidence            9999999999999999999999999999999999999999999999999999999999999965 488999999999999


Q ss_pred             eecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcc
Q 012936          323 FRSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQI  402 (453)
Q Consensus       323 ~RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~I  402 (453)
                      +|||||||||||||+|||||+|+||||+|+||++|||++||+.||++|+++|++++.+++.++.++.++.+.+++||+||
T Consensus       244 ~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i~~G~~I  323 (365)
T 1gqe_A          244 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQI  323 (365)
T ss_dssp             ECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEE
T ss_pred             ecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCe
Confidence            99999999999999999999999999999999999999999999999999999999998888777778777889999999


Q ss_pred             eeeecCCCcccceecccceecCcccccCCCcHHHHHHHHHcc
Q 012936          403 RTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSAS  444 (453)
Q Consensus       403 RtYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~a~l~~~  444 (453)
                      |||||+|++ |||||||++++||++||+||||+||+|++.|.
T Consensus       324 RtY~f~~~r-VkDhRt~~~~~~l~~vldGdld~~I~a~l~~~  364 (365)
T 1gqe_A          324 RSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKAG  364 (365)
T ss_dssp             EEEEGGGTE-EEETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred             EeEECCCCe-eeccccCceECCHHHHhCCCHHHHHHHHHHhc
Confidence            999998877 99999999999999999999999999999875
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Back     alignment and structure
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Back     alignment and structure
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Back     alignment and structure
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Back     alignment and structure
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Back     alignment and structure
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Back     alignment and structure
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Back     alignment and structure
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Back     alignment and structure
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Back     alignment and structure
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 453
d1gqea_362 e.38.1.1 (A:) Polypeptide chain release factor 2 ( 7e-97
d2b3tb1344 e.38.1.1 (B:7-354) Peptide chain release factor 1, 3e-75
d1rq0a_333 e.38.1.1 (A:) Peptide chain release factor 1, RF1 3e-70
d1j26a_112 d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ 1e-14
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

 Score =  293 bits (751), Expect = 7e-97
 Identities = 151/360 (41%), Positives = 228/360 (63%), Gaps = 2/360 (0%)

Query: 86  KSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKM 145
            +    + +   V++  L +     RL  ++AEL +P++W++P  A  + +E  SL   +
Sbjct: 5   NNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVV 64

Query: 146 KEVKAFEQELLEHIDMIKLAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCS 205
             +   +Q L +   +++LA E +D E   E++  L  +  K  + E   + SGE D   
Sbjct: 65  DTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSAD 124

Query: 206 CYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTLMDEMPGEIAGIKRATIKVDGEY 265
           CY+++QAG+GGTE+ DWASM+ +MY  WA+ RG++  +++E  GE+AGIK  TIK+ G+Y
Sbjct: 125 CYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDY 184

Query: 266 AFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERFRS 325
           A+G+ + E GVHRLVR SPFDSG RRHTSF++  V P   D    ++IN +DLRI+ +R+
Sbjct: 185 AYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPADLRIDVYRA 243

Query: 326 GGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQM 385
            GAGGQH N T+SAVRI HIPTGI   CQN+RSQH+NK  AM  +++++ ++E+ ++   
Sbjct: 244 SGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAE 303

Query: 386 NAEHTQSLTDISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASL 445
                 + +DI WG+QIR+YVL   R +KDLRT  E  +  +VL+G LD FI + L A L
Sbjct: 304 KQAMEDNKSDIGWGSQIRSYVLDDSR-IKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL 362
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
d1gqea_362 Polypeptide chain release factor 2 (RF2) {Escheric 100.0
d2b3tb1344 Peptide chain release factor 1, RF1 {Escherichia c 100.0
d1rq0a_333 Peptide chain release factor 1, RF1 {Thermotoga ma 100.0
d1j26a_112 Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} 99.78
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Release factor
superfamily: Release factor
family: Release factor
domain: Polypeptide chain release factor 2 (RF2)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8e-118  Score=903.92  Aligned_cols=359  Identities=42%  Similarity=0.747  Sum_probs=344.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012936           84 DWKSHAAAIAQSIQVIKKRLQWKNLNVRLNLLSAELNKPNLWDDPVHAGRISREHGSLMGKMKEVKAFEQELLEHIDMIK  163 (453)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~le~~lsdP~~wdD~~ka~kl~KE~s~L~~~v~~~~~l~~~l~d~~el~E  163 (453)
                      +++..+++|..++..|+.+||++.++.|+++||.+|++|+||+||++|++++||++.|+++++.|+.|++.++|+.++.+
T Consensus         3 ~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~E   82 (362)
T d1gqea_           3 PVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLE   82 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCCceEEEecCCCchHHHHHHHHHHHHHHHHHHHCCCEEEE
Q 012936          164 LAREENDTELELESLEALLTMRRKSKEKELDALLSGELDPCSCYIEVQAGAGGTESMDWASMVLQMYKSWAQRRGYRVTL  243 (453)
Q Consensus       164 La~eE~D~El~~e~~~el~~~~~~~~~~el~~LL~~~~D~~~~~leI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~~~ei  243 (453)
                      |+.+++|+++.+++..++..+...+.++++..||+||+|.+||||||+||+||+||++||+||||||+|||+++||++++
T Consensus        83 la~ee~deel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~ei  162 (362)
T d1gqea_          83 LAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEI  162 (362)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HhhhhhhHHHHHHHHHHHHHHhhhhhHHHHhhcccCcccccceEEEEEecCchhhHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCeeEEEEEEeccchhcccccccceEEEEEeCCCCCCCccccceeEEEEeeCCCCCCCccccCCCCeEEEEe
Q 012936          244 MDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPNSGDSSTHVQINESDLRIERF  323 (453)
Q Consensus       244 v~~~~~~~~Giksa~l~i~G~~ayg~lk~E~GvHRv~Rvsp~~s~grrhTSfasV~VlP~~~~~~~~i~I~~~dl~i~~~  323 (453)
                      ++.++++.||||+|+|.|+|++|||+||+|+|||||||||||+++||||||||+|+|+|++++ +++|+|+++||+|+||
T Consensus       163 id~~~~e~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~-~~~~~i~~~dl~i~~~  241 (362)
T d1gqea_         163 IEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDD-DIDIEINPADLRIDVY  241 (362)
T ss_dssp             EEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBT-TBCCCCCGGGEEEEEE
T ss_pred             eccccCCccceeEEEEEEECccHHHHHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCC-ccceecChHHeEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999855 4889999999999999


Q ss_pred             ecCCCCCccccccCceEEEEeecCceEEEEcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccCcce
Q 012936          324 RSGGAGGQHANTTDSAVRIIHIPTGITATCQNERSQHQNKASAMGVLQSRVNQLEIARQAQMNAEHTQSLTDISWGNQIR  403 (453)
Q Consensus       324 RssGpGGQ~VNkt~SaVri~HiPTGivv~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~~~~~~~~~rg~~IR  403 (453)
                      |||||||||||||+|||||||+||||+|+||++||||+||+.||++|++||++++.+++.++....+..+.+++||++||
T Consensus       242 rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~iR  321 (362)
T d1gqea_         242 RASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQIR  321 (362)
T ss_dssp             CCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEEE
T ss_pred             ecCCCCccchhhhhceeEEEecCchhHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCcCCcc
Confidence            99999999999999999999999999999999999999999999999999999988876665555555667899999999


Q ss_pred             eeecCCCcccceecccceecCcccccCCCcHHHHHHHHHcc
Q 012936          404 TYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSAS  444 (453)
Q Consensus       404 tYn~~p~~~VtDhRt~~~~~~l~~vldGdLD~fI~a~l~~~  444 (453)
                      ||||+|+ +|||||||++++||++||+|+||+||+|||.+.
T Consensus       322 tY~~~~~-rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~  361 (362)
T d1gqea_         322 SYVLDDS-RIKDLRTGVETRNTQAVLDGSLDQFIEASLKAG  361 (362)
T ss_dssp             EEEGGGT-EEEETTTCCEESCHHHHHTTCCHHHHHHHHHTT
T ss_pred             CccCCCC-cccccccCCeeCChhHHhCCCHHHHHHHHHHCC
Confidence            9999665 699999999999999999999999999999864
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure