Citrus Sinensis ID: 013130

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45

MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQEAPPAEKEKKPAATGEEQKA

cHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccEEEEccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEccccccEEccccccccccccccccccccccccccccc

cHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccEEEEcccEEEEEcccccccccccccHHHHHcccEEEccccccccHHHHHHHccccccccccccccccccccEEEEHHHHHHHccccEEEccccccccccccHHHHHHHHHHcccccEEEEEEccEEEEccccHccccccHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEccccccEEEccccHHHHccccccccccccccccccccc

MQIIRRAndlgenplslSNRYCQEYLVDmadlqclpptyqprvsDHMEQIKDMITQIINNDCAYVVEGDVFFAvekspnygrlsgqrlennragervavdsrkrnpaDFALWKAAkagepswdspwgpgrpgwhieCSAMSAHYLSskfdihgggidlifphheneiaqscaacqdsnvsywmhnghvtnnnekMSKSLGNFFTIRQITERYHPLALRHFLISahyrsplnysvlqldsaSDAVFYIYQTLQDCEVAlspfqehgktarinpaaEDCINKLRDEFHArmsddlntshILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILgllppgaySEVLQQLKDKALKRAELTEEDVLQLIEERAAArknkdfsksdQIRADLTRKGIALMDmgketiwrpcvlveqeqeappaekekkpaatgeeqka

mqiirrandlgenplsLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPnygrlsgqrlennragervavdsrkrnpADFALWKAAkagepswdspwGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHgktarinpaaEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERaaarknkdfsksdqiraDLTRKGIALMDMGKETIWRPCVLVEQeqeappaekekkpaatgeeqka

MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLkkkqpkqqqLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVeqeqeappaekekkpaaTGEEQKA

****************LSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK********************************FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL**************LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKAL*********VLQL*********************DLTRKGIALMDMGKETIWRPCVLV************************

MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP************AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN*************LIESLRKIENEVKEVLRILGLLPPGAYSEVLQ***********LTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPC***************************

MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNML**********SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQ**********************

MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG*TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVE***********************

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MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQEAPPAEKEKKPAATGEEQKA

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		449	2.2.26 [Sep-21-2011]
A1AK01		493	Cysteine--tRNA ligase OS=	yes	no	0.913	0.831	0.468	1e-99
B3E1P0		487	Cysteine--tRNA ligase OS=	yes	no	0.908	0.837	0.456	4e-96
Q3J8Y9		485	Cysteine--tRNA ligase OS=	yes	no	0.888	0.822	0.445	2e-95
Q6AJ23		489	Cysteine--tRNA ligase OS=	yes	no	0.902	0.828	0.430	3e-95
A4J0Y9		486	Cysteine--tRNA ligase OS=	yes	no	0.917	0.847	0.439	1e-92
A0LIR9		493	Cysteine--tRNA ligase OS=	yes	no	0.915	0.833	0.431	1e-92
B9LZV4		494	Cysteine--tRNA ligase OS=	yes	no	0.910	0.827	0.437	5e-92
A5D5M0		484	Cysteine--tRNA ligase OS=	yes	no	0.913	0.847	0.448	5e-92
Q39ZL8		485	Cysteine--tRNA ligase OS=	yes	no	0.908	0.841	0.427	6e-92
A5G949		494	Cysteine--tRNA ligase OS=	yes	no	0.915	0.831	0.432	8e-92

>sp\|A1AK01\|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379) GN=cysS PE=3 SV=1	Back alignment and function desciption

 Score =  363 bits (933), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/425 (46%), Positives = 263/425 (61%), Gaps = 15/425 (3%)

Query: 2   QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
           +II RAN  G +  ++S RY + +  DMA L    PT +P+ +DHM  I  +I  +I   
Sbjct: 74  KIINRANQEGVDYTTISERYIEAFNQDMARLGLAKPTVEPKATDHMGGIISVIETLIAKG 133

Query: 62  CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
            AY  +GDV++AVE  P+Y RLSG+ LE+  AG RV VD RKRNP DFALWK +K GEPS
Sbjct: 134 HAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDRKRNPMDFALWKGSKPGEPS 193

Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
           WDSPWG GRPGWHIECSAMS  YL   FDIHGGG DL+FPHHENEIAQS AA     V Y
Sbjct: 194 WDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPHHENEIAQSEAANGCQFVRY 253

Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
           WMHNG V  N+EKMSKSLGNFFTIR++ E+Y P  LR F++SAHYRSP+++S   L+ A 
Sbjct: 254 WMHNGFVNINSEKMSKSLGNFFTIREVLEQYDPETLRFFILSAHYRSPIDFSDQNLNDAQ 313

Query: 242 DAVFYIYQTLQDCEVALS----PFQEHGKTARINPAAEDCINKLR---DEFHARMSDDLN 294
             +  IY  L   + A+     P Q   + A + PA  +   KL+     F   M DD N
Sbjct: 314 AGLERIYSCLAAVDGAMEGQDVPNQPV-EGAPLPPAGAELHEKLQSLISRFREAMDDDFN 372

Query: 295 TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGA 354
           T+  L G   +A++  N  +     + P    L+L+  +R++  E  +VL +     P A
Sbjct: 373 TAQAL-GVLFEAVRATNRFMAESGDQTPA--TLALLGQVRRLFAETGDVLGLF-TSQPAA 428

Query: 355 YSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMG 414
           + E ++Q K   +   E++ +++ QLI ERAAAR N+DF + D+IR  L +KGI L+D  
Sbjct: 429 WLESIKQAKSDQM---EISPQEIEQLIAERAAARTNRDFKRGDEIRDLLLQKGIQLLDSP 485

Query: 415 KETIW 419
           + T W
Sbjct: 486 QGTTW 490

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6

>sp\|B3E1P0\|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|Q3J8Y9\|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|Q6AJ23\|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|A4J0Y9\|SYC_DESRM Cysteine--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|A0LIR9\|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|B9LZV4\|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|A5D5M0\|SYC_PELTS Cysteine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|Q39ZL8\|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|A5G949\|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4) GN=cysS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		449
255585350		530	cysteinyl-tRNA synthetase, putative [Ric	0.982	0.832	0.753	0.0
359475690		513	PREDICTED: cysteinyl-tRNA synthetase-lik	0.964	0.844	0.783	0.0
224111652		532	predicted protein [Populus trichocarpa]	0.977	0.825	0.765	0.0
359496172		513	PREDICTED: cysteinyl-tRNA synthetase-lik	0.964	0.844	0.783	0.0
449464950		562	PREDICTED: cysteine--tRNA ligase-like [C	0.986	0.788	0.743	0.0
356575566		553	PREDICTED: cysteinyl-tRNA synthetase-lik	0.991	0.804	0.687	0.0
356536300		548	PREDICTED: cysteinyl-tRNA synthetase-lik	0.968	0.793	0.695	1e-180
357444709		552	Cysteinyl-tRNA synthetase [Medicago trun	0.939	0.764	0.721	1e-180
15241557		511	cysteinyl-tRNA synthetase [Arabidopsis t	0.935	0.821	0.684	1e-172
297801734		511	tRNA synthetase class I (C) family prote	0.935	0.821	0.684	1e-170

>gi\|255585350\|ref\|XP_002533372.1\| cysteinyl-tRNA synthetase, putative [Ricinus communis] gi\|223526794\|gb\|EEF29017.1\| cysteinyl-tRNA synthetase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/451 (75%), Positives = 389/451 (86%), Gaps = 10/451 (2%)

Query: 2   QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
           +II+RAN+ GE+P SLS+R+C+EYLVDM  LQCL PT+QPRV+DH+EQIKDMITQIINN 
Sbjct: 78  KIIKRANESGEDPFSLSSRFCEEYLVDMDSLQCLRPTHQPRVTDHIEQIKDMITQIINNG 137

Query: 62  CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
            AY  EGDVFFAV+K PNYG+LSGQ+LEN+RAGER   D+RKRNPADFALWKAAK GEPS
Sbjct: 138 FAYPSEGDVFFAVDKFPNYGQLSGQKLENHRAGERNP-DTRKRNPADFALWKAAKPGEPS 196

Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
           W+SPWGPGRPGWHIECSAMSA YL+ KFDIHGGG DLIFPHHENEI QS AACQ+SNVSY
Sbjct: 197 WESPWGPGRPGWHIECSAMSAQYLTFKFDIHGGGSDLIFPHHENEITQSAAACQESNVSY 256

Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
           W+HNGHVTNNNEKMSKSLGN+FTIR++TERYHPLA+RHFLISAHYRSPLNY+V QL+SAS
Sbjct: 257 WIHNGHVTNNNEKMSKSLGNYFTIREVTERYHPLAVRHFLISAHYRSPLNYTVFQLESAS 316

Query: 242 DAVFYIYQTLQDCEVALSPFQ---------EHGKTARINPAAEDCINKLRDEFHARMSDD 292
           DA+FYIYQTLQDCE ALS FQ         ++ K   I   A+ CINKLRDEF  +MSDD
Sbjct: 317 DAIFYIYQTLQDCEDALSMFQDGSLKEGAAQNSKVVGITADAKKCINKLRDEFETKMSDD 376

Query: 293 LNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 352
           L+TSHILTGAFQDALKFINSS++MLKKK  K QQLSLI+SL +IE E+K VL ILGLLPP
Sbjct: 377 LSTSHILTGAFQDALKFINSSISMLKKKLQKPQQLSLIQSLTEIEREIKLVLNILGLLPP 436

Query: 353 GAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMD 412
           G Y+E+LQQLKDKALKRA +TE+DVL+ IEERA ARKNK+FS+SDQ+RA+L  KGIALMD
Sbjct: 437 GTYAEILQQLKDKALKRAGVTEDDVLRSIEERAQARKNKEFSRSDQVRANLAAKGIALMD 496

Query: 413 MGKETIWRPCVLVEQEQEAPPAEKEKKPAAT 443
           +GKET+WRPCV VEQEQEA    K++ P  T
Sbjct: 497 VGKETVWRPCVPVEQEQEAVSVVKDQNPPPT 527

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359475690\|ref\|XP_003631732.1\| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] gi\|296087508\|emb\|CBI34097.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224111652\|ref\|XP_002315932.1\| predicted protein [Populus trichocarpa] gi\|222864972\|gb\|EEF02103.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359496172\|ref\|XP_002262997.2\| PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera] gi\|297735988\|emb\|CBI23962.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449464950\|ref\|XP_004150192.1\| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus] gi\|449508099\|ref\|XP_004163218.1\| PREDICTED: cysteine--tRNA ligase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356575566\|ref\|XP_003555910.1\| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356536300\|ref\|XP_003536677.1\| PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max]	Back alignment and taxonomy information

>gi\|357444709\|ref\|XP_003592632.1\| Cysteinyl-tRNA synthetase [Medicago truncatula] gi\|355481680\|gb\|AES62883.1\| Cysteinyl-tRNA synthetase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|15241557\|ref\|NP_198699.1\| cysteinyl-tRNA synthetase [Arabidopsis thaliana] gi\|192807340\|gb\|ACF06122.1\| At5g38830 [Arabidopsis thaliana] gi\|332006981\|gb\|AED94364.1\| cysteinyl-tRNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297801734\|ref\|XP_002868751.1\| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata] gi\|297314587\|gb\|EFH45010.1\| tRNA synthetase class I (C) family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		449
TAIR\|locus:2152237		511	AT5G38830 "AT5G38830" [Arabido	0.935	0.821	0.672	2.1e-155
UNIPROTKB\|Q0IZQ2		569	Os09g0556500 "Os09g0556500 pro	0.922	0.727	0.609	2.5e-136
TAIR\|locus:2042521		563	SYCO ARATH "cysteinyl t-RNA sy	0.926	0.738	0.594	6.2e-133
TAIR\|locus:2078406		489	AT3G56300 "AT3G56300" [Arabido	0.507	0.466	0.725	1.2e-119
UNIPROTKB\|Q7G2N5		491	LOC_Os10g32570 "tRNA synthetas	0.407	0.372	0.650	1.7e-103
UNIPROTKB\|A8JCV0		637	CHLREDRAFT_153062 "Cysteinyl-t	0.385	0.271	0.602	8.3e-97
UNIPROTKB\|Q747A2		481	cysS "Cysteine--tRNA ligase" [	0.902	0.841	0.438	1.2e-81
TIGR_CMR\|GSU_3365		481	GSU_3365 "cysteinyl-tRNA synth	0.902	0.841	0.438	1.2e-81
TIGR_CMR\|CHY_2338		465	CHY_2338 "cysteinyl-tRNA synth	0.681	0.658	0.482	2.8e-80
UNIPROTKB\|O67163		495	cysS "Cysteine--tRNA ligase" [	0.917	0.832	0.400	1.6e-77

TAIR\|locus:2152237 AT5G38830 "AT5G38830" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
 Identities = 286/425 (67%), Positives = 343/425 (80%)

Query:     2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
             +II RAN  GE+PL LSNR+C EYLVDM  LQCLPPT+QPRVS+HM+ I  MI +II  D
Sbjct:    79 KIIDRANKNGEDPLDLSNRFCDEYLVDMGALQCLPPTHQPRVSEHMDNIIKMIEKIIEKD 138

Query:    62 CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
             C YVVEGDVFF+V+KSPNYG+LSGQ LE+ RAGERVAVDSRKRNPADFALWKAAK  EPS
Sbjct:   139 CGYVVEGDVFFSVDKSPNYGKLSGQLLEHTRAGERVAVDSRKRNPADFALWKAAKPDEPS 198

Query:   122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
             W+SPWGPGRPGWHIECSAMS HYLS KFDIHGGG DL FPHHENEIAQ+CAAC+DS V+Y
Sbjct:   199 WESPWGPGRPGWHIECSAMSVHYLSPKFDIHGGGADLKFPHHENEIAQTCAACEDSGVNY 258

Query:   182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
             W+HNGHVT NNEKM+KS  NF TIR+IT  YHPLALRHFL+SA YRSPL+++  QL+S+S
Sbjct:   259 WLHNGHVTINNEKMAKSKHNFKTIREITASYHPLALRHFLMSAQYRSPLSFTASQLESSS 318

Query:   242 DAVFYIYQTLQDCEVALSPFQ----EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSH 297
             +A++Y+YQTLQD +  LSP+Q    E G  +      +D I KL+ EF ++M DDLNT+H
Sbjct:   319 EALYYVYQTLQDLDEGLSPYQDALSEDGGKSEQTAEGKDIIKKLKTEFESKMLDDLNTAH 378

Query:   298 ILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRKIENEVKEVLRILGLLPPGAYSE 357
             ILTGA+QDALKFIN+SL+ L         +S++ SL +IE   +EVL +LGLL   +Y+E
Sbjct:   379 ILTGAYQDALKFINASLSKLKKMQKKQR-MSMLVSLVEIEKAAREVLDVLGLLTTLSYAE 437

Query:   358 VLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 417
             +L+++K K L RAE+ EE + QLIEER  ARKNKDF+KSD+IR  LTRKGIALMD+GKET
Sbjct:   438 ILKEMKLKTLIRAEIGEEGISQLIEERITARKNKDFAKSDEIREKLTRKGIALMDIGKET 497

Query:   418 IWRPC 422
             +WRPC
Sbjct:   498 VWRPC 502

GO:0004817 "cysteine-tRNA ligase activity" evidence=IEA;ISS;IBA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=IBA

GO:0005829 "cytosol" evidence=IDA;IBA

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=IEA;ISS;IBA

GO:0009507 "chloroplast" evidence=IBA

GO:0046686 "response to cadmium ion" evidence=IEP

UNIPROTKB\|Q0IZQ2 Os09g0556500 "Os09g0556500 protein" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2042521 SYCO ARATH "cysteinyl t-RNA synthetase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2078406 AT3G56300 "AT3G56300" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7G2N5 LOC_Os10g32570 "tRNA synthetase class I family protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|A8JCV0 CHLREDRAFT_153062 "Cysteinyl-tRNA synthetase" [Chlamydomonas reinhardtii (taxid:3055)]	Back alignment and assigned GO terms

UNIPROTKB\|Q747A2 cysS "Cysteine--tRNA ligase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_3365 GSU_3365 "cysteinyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_2338 CHY_2338 "cysteinyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

UNIPROTKB\|O67163 cysS "Cysteine--tRNA ligase" [Aquifex aeolicus VF5 (taxid:224324)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AJ23	SYC_DESPS	6, ., 1, ., 1, ., 1, 6	0.4302	0.9020	0.8282	yes	no
B6YUQ3	SYC_THEON	6, ., 1, ., 1, ., 1, 6	0.3976	0.8864	0.8361	yes	no
Q0AJJ4	SYC_NITEC	6, ., 1, ., 1, ., 1, 6	0.4289	0.8685	0.8351	yes	no
A1WT89	SYC_HALHL	6, ., 1, ., 1, ., 1, 6	0.4170	0.8485	0.8300	yes	no
Q6FC71	SYC_ACIAD	6, ., 1, ., 1, ., 1, 6	0.4089	0.8730	0.8287	yes	no
B9MMM6	SYC_CALBD	6, ., 1, ., 1, ., 1, 6	0.4134	0.8641	0.8344	yes	no
Q9UYV2	SYC_PYRAB	6, ., 1, ., 1, ., 1, 6	0.4052	0.8819	0.8301	yes	no
Q82Y45	SYC_NITEU	6, ., 1, ., 1, ., 1, 6	0.4238	0.8530	0.8236	yes	no
C6E7P0	SYC_GEOSM	6, ., 1, ., 1, ., 1, 6	0.4323	0.8975	0.8395	yes	no
Q7NX82	SYC_CHRVO	6, ., 1, ., 1, ., 1, 6	0.4336	0.8463	0.8315	yes	no
Q5JD45	SYC_PYRKO	6, ., 1, ., 1, ., 1, 6	0.4133	0.8841	0.8340	yes	no
B9LZV4	SYC_GEOSF	6, ., 1, ., 1, ., 1, 6	0.4379	0.9109	0.8279	yes	no
Q8U227	SYC_PYRFU	6, ., 1, ., 1, ., 1, 6	0.4099	0.8997	0.8469	yes	no
Q8R7T3	SYC_THETN	6, ., 1, ., 1, ., 1, 6	0.4099	0.8685	0.8351	yes	no
A4XHE2	SYC_CALS8	6, ., 1, ., 1, ., 1, 6	0.4134	0.8641	0.8344	yes	no
A5G949	SYC_GEOUR	6, ., 1, ., 1, ., 1, 6	0.4329	0.9153	0.8319	yes	no
C5A739	SYC_THEGJ	6, ., 1, ., 1, ., 1, 6	0.4224	0.8886	0.8382	yes	no
Q747A2	SYC_GEOSL	6, ., 1, ., 1, ., 1, 6	0.4323	0.8997	0.8399	yes	no
Q39ZL8	SYC_GEOMG	6, ., 1, ., 1, ., 1, 6	0.4275	0.9086	0.8412	yes	no
Q3A8C9	SYC_PELCD	6, ., 1, ., 1, ., 1, 6	0.4295	0.8886	0.8295	yes	no
O58370	SYC_PYRHO	6, ., 1, ., 1, ., 1, 6	0.4109	0.8841	0.8340	yes	no
Q6MKR7	SYC_BDEBA	6, ., 1, ., 1, ., 1, 6	0.4	0.8997	0.8381	yes	no
B5YID4	SYC_THEYD	6, ., 1, ., 1, ., 1, 6	0.4137	0.9086	0.8377	yes	no
B0VAU1	SYC_ACIBY	6, ., 1, ., 1, ., 1, 6	0.4099	0.8752	0.8308	yes	no
B2HX34	SYC_ACIBC	6, ., 1, ., 1, ., 1, 6	0.4146	0.8752	0.8308	yes	no
A3M419	SYC_ACIBT	6, ., 1, ., 1, ., 1, 6	0.4146	0.8752	0.8308	yes	no
Q3J8Y9	SYC_NITOC	6, ., 1, ., 1, ., 1, 6	0.4454	0.8886	0.8226	yes	no
B0TC35	SYC_HELMI	6, ., 1, ., 1, ., 1, 6	0.4178	0.8886	0.8295	yes	no
Q0HH98	SYC_SHESM	6, ., 1, ., 1, ., 1, 6	0.4184	0.8485	0.8264	yes	no
O67163	SYC_AQUAE	6, ., 1, ., 1, ., 1, 6	0.3976	0.9153	0.8303	yes	no
Q2Y7U5	SYC_NITMU	6, ., 1, ., 1, ., 1, 6	0.4329	0.8418	0.8146	yes	no
A3DH43	SYC_CLOTH	6, ., 1, ., 1, ., 1, 6	0.3990	0.8685	0.8333	yes	no
B8GNT5	SYC_THISH	6, ., 1, ., 1, ., 1, 6	0.4380	0.8574	0.8369	yes	no
Q18CD5	SYC_CLOD6	6, ., 1, ., 1, ., 1, 6	0.4033	0.8730	0.8430	yes	no
Q60BG8	SYC_METCA	6, ., 1, ., 1, ., 1, 6	0.4502	0.8641	0.8344	yes	no
Q5QYP3	SYC_IDILO	6, ., 1, ., 1, ., 1, 6	0.4261	0.8530	0.8344	yes	no
A1AK01	SYC_PELPD	6, ., 1, ., 1, ., 1, 6	0.4682	0.9131	0.8316	yes	no
B5EEK6	SYC_GEOBB	6, ., 1, ., 1, ., 1, 6	0.4285	0.8841	0.8270	yes	no
Q0HTK4	SYC_SHESR	6, ., 1, ., 1, ., 1, 6	0.4184	0.8485	0.8264	yes	no
Q31H54	SYC_THICR	6, ., 1, ., 1, ., 1, 6	0.4428	0.8463	0.8333	yes	no
B7IBU3	SYC_ACIB5	6, ., 1, ., 1, ., 1, 6	0.4099	0.8752	0.8308	yes	no
C6BS23	SYC_DESAD	6, ., 1, ., 1, ., 1, 6	0.4042	0.9042	0.8371	yes	no
Q3A9P1	SYC_CARHZ	6, ., 1, ., 1, ., 1, 6	0.4198	0.8619	0.8322	yes	no
A0LIR9	SYC_SYNFM	6, ., 1, ., 1, ., 1, 6	0.4319	0.9153	0.8336	yes	no
Q1H417	SYC_METFK	6, ., 1, ., 1, ., 1, 6	0.4420	0.8396	0.8285	yes	no
B3E1P0	SYC_GEOLS	6, ., 1, ., 1, ., 1, 6	0.4562	0.9086	0.8377	yes	no
A4J0Y9	SYC_DESRM	6, ., 1, ., 1, ., 1, 6	0.4391	0.9175	0.8477	yes	no
Q2SK40	SYC_HAHCH	6, ., 1, ., 1, ., 1, 6	0.4333	0.8730	0.8394	yes	no
Q0A7N3	SYC_ALHEH	6, ., 1, ., 1, ., 1, 6	0.4302	0.8552	0.8311	yes	no
A5D5M0	SYC_PELTS	6, ., 1, ., 1, ., 1, 6	0.4486	0.9131	0.8471	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.16	0.824
3rd Layer	6.1.1	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		449
PLN02946		557	PLN02946, PLN02946, cysteine-tRNA ligase	0.0
PRK00260		463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	0.0
COG0215		464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	1e-165
TIGR00435		464	TIGR00435, cysS, cysteinyl-tRNA synthetase	1e-136
pfam01406		301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	1e-116
PRK14535		699	PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi	1e-92
PTZ00399		651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	4e-90
PRK14536		490	PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi	3e-84
cd00672		213	cd00672, CysRS_core, catalytic core domain of cyst	1e-60
TIGR03447		411	TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosi	9e-59
PRK12418		384	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Pro	7e-56
PRK14534		481	PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi	5e-50
cd07963		156	cd07963, Anticodon_Ia_Cys, Anticodon-binding domai	4e-21
cd00812		314	cd00812, LeuRS_core, catalytic core domain of leuc	3e-07
COG0143		558	COG0143, MetG, Methionyl-tRNA synthetase [Translat	8e-07
pfam09334		388	pfam09334, tRNA-synt_1g, tRNA synthetases class I	1e-06
cd00672		213	cd00672, CysRS_core, catalytic core domain of cyst	2e-06
cd00814		319	cd00814, MetRS_core, catalytic core domain of meth	4e-06
PLN02959		1084	PLN02959, PLN02959, aminoacyl-tRNA ligase	5e-06
cd00802		143	cd00802, class_I_aaRS_core, catalytic core domain	2e-05
PRK12300		897	PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	2e-05
TIGR00395		938	TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch	4e-04
cd00668		312	cd00668, Ile_Leu_Val_MetRS_core, catalytic core do	4e-04
COG0495		814	COG0495, LeuS, Leucyl-tRNA synthetase [Translation	7e-04
PRK11893		511	PRK11893, PRK11893, methionyl-tRNA synthetase; Rev	0.001
TIGR00398		530	TIGR00398, metG, methionyl-tRNA synthetase	0.002
PRK12268		556	PRK12268, PRK12268, methionyl-tRNA synthetase; Rev	0.003
PRK00750		510	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed	0.003

>gnl\|CDD\|178532 PLN02946, PLN02946, cysteine-tRNA ligase	Back alignment and domain information

 Score =  645 bits (1665), Expect = 0.0
 Identities = 276/432 (63%), Positives = 335/432 (77%), Gaps = 9/432 (2%)

Query: 2   QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61
           +II RAN+LGE+P+SLS RYC+E+L DMA L CLPP+ +PRVSDH+ QI DMI QI++N 
Sbjct: 131 KIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNG 190

Query: 62  CAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
           CAY V+GDV+F+V+K P YG+LSG++LE+NRAGERVAVDSRK+NPADFALWKAAK GEP 
Sbjct: 191 CAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPF 250

Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
           WDSPWGPGRPGWHIECSAMSA YL   FDIHGGG+DL+FPHHENEIAQSCAAC DSN+SY
Sbjct: 251 WDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISY 310

Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
           W+HNG VT ++EKMSKSLGNFFTIRQ+ + YHPLALR FL+  HYRSP+NYS +QL+SAS
Sbjct: 311 WIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESAS 370

Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
           + +FYIYQTL DCE +L       +   + P   +CINK  DEF   MSDDL+T  +   
Sbjct: 371 ERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTP-VALA 429

Query: 302 AFQDALKFINSSLNMLK-KKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQ 360
           A  + LK IN  L+  K KKQ K+     +ESL  +E ++++VL +LGL+P  +YSE LQ
Sbjct: 430 ALSEPLKTINDLLHTRKGKKQEKR-----LESLAALEKKIRDVLSVLGLMPT-SYSEALQ 483

Query: 361 QLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
           QL++KAL+RA+LTEE VLQ IEER  ARKNK++ KSD IR DL   GIALMD    T WR
Sbjct: 484 QLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWR 543

Query: 421 PCV-LVEQEQEA 431
           P + L  QEQ A
Sbjct: 544 PAIPLALQEQVA 555

Length = 557

>gnl\|CDD\|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain	Back alignment and domain information

>gnl\|CDD\|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>gnl\|CDD\|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)	Back alignment and domain information

>gnl\|CDD\|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>gnl\|CDD\|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|232957 TIGR00398, metG, methionyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		449
COG0215		464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	100.0
PLN02946		557	cysteine-tRNA ligase	100.0
PRK14535		699	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14536		490	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14534		481	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK00260		463	cysS cysteinyl-tRNA synthetase; Validated	100.0
PTZ00399		651	cysteinyl-tRNA-synthetase; Provisional	100.0
TIGR00435		465	cysS cysteinyl-tRNA synthetase. This model finds t	100.0
KOG2007		586	consensus Cysteinyl-tRNA synthetase [Translation,	100.0
PRK12418		384	cysteinyl-tRNA synthetase; Provisional	100.0
TIGR03447		411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	100.0
PF01406		300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	100.0
KOG0436		578	consensus Methionyl-tRNA synthetase [Translation,	100.0
COG0143		558	MetG Methionyl-tRNA synthetase [Translation, ribos	100.0
PLN02224		616	methionine-tRNA ligase	100.0
PLN02610		801	probable methionyl-tRNA synthetase	100.0
PRK11893		511	methionyl-tRNA synthetase; Reviewed	100.0
PRK12267		648	methionyl-tRNA synthetase; Reviewed	100.0
PRK00133		673	metG methionyl-tRNA synthetase; Reviewed	100.0
TIGR00398		530	metG methionyl-tRNA synthetase. The methionyl-tRNA	100.0
PRK12268		556	methionyl-tRNA synthetase; Reviewed	100.0
cd00668		312	Ile_Leu_Val_MetRS_core catalytic core domain of is	100.0
cd00672		213	CysRS_core catalytic core domain of cysteinyl tRNA	100.0
PF09334		391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	100.0
PRK13208		800	valS valyl-tRNA synthetase; Reviewed	100.0
TIGR00422		861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	100.0
cd00814		319	MetRS_core catalytic core domain of methioninyl-tR	100.0
PRK05729		874	valS valyl-tRNA synthetase; Reviewed	100.0
TIGR00395		938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	100.0
cd00812		314	LeuRS_core catalytic core domain of leucyl-tRNA sy	100.0
PRK14900		1052	valS valyl-tRNA synthetase; Provisional	100.0
PRK05743		912	ileS isoleucyl-tRNA synthetase; Reviewed	100.0
PLN02943		958	aminoacyl-tRNA ligase	100.0
cd00817		382	ValRS_core catalytic core domain of valyl-tRNA syn	100.0
KOG1247		567	consensus Methionyl-tRNA synthetase [Translation,	99.98
PRK06039		975	ileS isoleucyl-tRNA synthetase; Reviewed	99.97
PTZ00419		995	valyl-tRNA synthetase-like protein; Provisional	99.97
cd00818		338	IleRS_core catalytic core domain of isoleucyl-tRNA	99.97
COG0525		877	ValS Valyl-tRNA synthetase [Translation, ribosomal	99.97
PRK01611		507	argS arginyl-tRNA synthetase; Reviewed	99.97
PRK00390		805	leuS leucyl-tRNA synthetase; Validated	99.97
PLN02843		974	isoleucyl-tRNA synthetase	99.96
PLN02882		1159	aminoacyl-tRNA ligase	99.96
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	99.96
PRK13804		961	ileS isoleucyl-tRNA synthetase; Provisional	99.96
TIGR00396		842	leuS_bact leucyl-tRNA synthetase, eubacterial and	99.96
TIGR00392		861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	99.95
PLN02563		963	aminoacyl-tRNA ligase	99.95
PTZ00427		1205	isoleucine-tRNA ligase, putative; Provisional	99.94
PLN02381		1066	valyl-tRNA synthetase	99.94
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	99.93
TIGR00456		566	argS arginyl-tRNA synthetase. This model recognize	99.93
PLN02959		1084	aminoacyl-tRNA ligase	99.91
KOG0432		995	consensus Valyl-tRNA synthetase [Translation, ribo	99.89
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	99.87
PRK12451		562	arginyl-tRNA synthetase; Reviewed	99.86
cd07963		156	Anticodon_Ia_Cys Anticodon-binding domain of cyste	99.84
KOG0433		937	consensus Isoleucyl-tRNA synthetase [Translation,	99.83
COG0018		577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	99.81
cd00674		353	LysRS_core_class_I catalytic core domain of class	99.8
PRK00750		510	lysK lysyl-tRNA synthetase; Reviewed	99.78
PLN02286		576	arginine-tRNA ligase	99.78
KOG0435		876	consensus Leucyl-tRNA synthetase [Translation, rib	99.73
PF00133		601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	99.7
TIGR00467		515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	99.69
KOG0434		1070	consensus Isoleucyl-tRNA synthetase [Translation,	99.68
PRK04156		567	gltX glutamyl-tRNA synthetase; Provisional	99.67
KOG0437		1080	consensus Leucyl-tRNA synthetase [Translation, rib	99.62
cd00671		212	ArgRS_core catalytic core domain of arginyl-tRNA s	99.62
PF01921		360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	99.31
PF00750		354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	99.2
COG1384		521	LysS Lysyl-tRNA synthetase (class I) [Translation,	99.19
cd00802		143	class_I_aaRS_core catalytic core domain of class I	99.11
cd07962		135	Anticodon_Ia_Val Anticodon-binding domain of valyl	98.9
cd07957		129	Anticodon_Ia_Met Anticodon-binding domain of methi	98.78
cd07960		180	Anticodon_Ia_Ile_BEm Anticodon-binding domain of b	98.69
cd09287		240	GluRS_non_core catalytic core domain of non-discri	98.66
TIGR00464		470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	98.66
PLN03233		523	putative glutamate-tRNA ligase; Provisional	98.62
PRK05347		554	glutaminyl-tRNA synthetase; Provisional	98.57
cd07958		117	Anticodon_Ia_Leu_BEm Anticodon-binding domain of b	98.55
PRK01406		476	gltX glutamyl-tRNA synthetase; Reviewed	98.54
PRK12558		445	glutamyl-tRNA synthetase; Provisional	98.51
TIGR00463		560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	98.48
cd07959		117	Anticodon_Ia_Leu_AEc Anticodon-binding domain of a	98.46
PRK14703		771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	98.46
cd07375		117	Anticodon_Ia_like Anticodon-binding domain of clas	98.45
PRK14895		513	gltX glutamyl-tRNA synthetase; Provisional	98.41
PRK12410		433	glutamylglutaminyl-tRNA synthetase; Provisional	98.41
PTZ00437		574	glutaminyl-tRNA synthetase; Provisional	98.39
PLN02907		722	glutamate-tRNA ligase	98.37
PTZ00402		601	glutamyl-tRNA synthetase; Provisional	98.36
cd07956		156	Anticodon_Ia_Arg Anticodon-binding domain of argin	98.28
cd00808		239	GluRS_core catalytic core domain of discriminating	98.27
PF09190		63	DALR_2: DALR domain; InterPro: IPR015273 The amino	98.27
cd00418		230	GlxRS_core catalytic core domain of glutamyl-tRNA	98.26
TIGR00440		522	glnS glutaminyl-tRNA synthetase. This protein is a	98.25
cd07961		183	Anticodon_Ia_Ile_ABEc Anticodon-binding domain of	98.2
cd00807		238	GlnRS_core catalytic core domain of glutaminyl-tRN	98.14
PLN02859		788	glutamine-tRNA ligase	98.13
KOG1195		567	consensus Arginyl-tRNA synthetase [Translation, ri	98.01
COG0008		472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	97.98
PLN02627		535	glutamyl-tRNA synthetase	97.97
smart00840		56	DALR_2 This DALR domain is found in cysteinyl-tRNA	97.93
PRK05710		299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	97.89
TIGR03838		272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	97.88
PF08264		153	Anticodon_1: Anticodon-binding domain of tRNA; Int	97.85
KOG4426		656	consensus Arginyl-tRNA synthetase [Translation, ri	97.75
PF00749		314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	97.5
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	97.36
cd07955		81	Anticodon_Ia_Cys_like Anticodon-binding domain of	97.11
PLN02882		1159	aminoacyl-tRNA ligase	96.86
KOG1149		524	consensus Glutamyl-tRNA synthetase (mitochondrial)	96.8
PF05746		119	DALR_1: DALR anticodon binding domain; InterPro: I	96.6
TIGR00392		861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	96.5
PLN02843		974	isoleucyl-tRNA synthetase	96.39
cd00805		269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	96.36
KOG2007		586	consensus Cysteinyl-tRNA synthetase [Translation,	96.23
cd00395		273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	96.19
TIGR00233		328	trpS tryptophanyl-tRNA synthetase. This model repr	96.15
PRK13354		410	tyrosyl-tRNA synthetase; Provisional	96.13
PRK05912		408	tyrosyl-tRNA synthetase; Validated	96.05
PTZ00427		1205	isoleucine-tRNA ligase, putative; Provisional	96.02
PLN02381		1066	valyl-tRNA synthetase	95.97
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	95.55
PRK12284		431	tryptophanyl-tRNA synthetase; Reviewed	95.51
PRK13804		961	ileS isoleucyl-tRNA synthetase; Provisional	95.37
PRK12556		332	tryptophanyl-tRNA synthetase; Provisional	95.11
smart00836		122	DALR_1 DALR anticodon binding domain. This all alp	95.09
PTZ00126		383	tyrosyl-tRNA synthetase; Provisional	94.63
PF00133		601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	94.37
PRK12282		333	tryptophanyl-tRNA synthetase II; Reviewed	94.23
PF00579		292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	94.17
PRK08560		329	tyrosyl-tRNA synthetase; Validated	93.98
cd00806		280	TrpRS_core catalytic core domain of tryptophanyl-t	93.34
PRK12283		398	tryptophanyl-tRNA synthetase; Reviewed	93.31
PRK00927		333	tryptophanyl-tRNA synthetase; Reviewed	93.2
PRK12285		368	tryptophanyl-tRNA synthetase; Reviewed	93.0
COG0180		314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	91.74
KOG1147		712	consensus Glutamyl-tRNA synthetase [Translation, r	91.52
COG0162		401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	90.89
TIGR00234		377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	90.58
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	90.33
PTZ00348		682	tyrosyl-tRNA synthetase; Provisional	89.9
PLN02959		1084	aminoacyl-tRNA ligase	89.02
COG0525		877	ValS Valyl-tRNA synthetase [Translation, ribosomal	88.72
PLN02486		383	aminoacyl-tRNA ligase	88.68
PLN02886		389	aminoacyl-tRNA ligase	87.74

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=4.9e-109  Score=825.48  Aligned_cols=383  Identities=46%  Similarity=0.810  Sum_probs=339.8

Q ss_pred             hhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee-cCcEEEeCCCCCcc
Q 013130            2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNY   80 (449)
Q Consensus         2 KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~-~g~~yf~~~~~~~y   80 (449)
                      |||++|.+.|.++.++|++|+++|++||++|||.+||.+||+|+||+.|+++|++|+++||||++ +|+|||+|++|++|
T Consensus        73 KIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~Y  152 (464)
T COG0215          73 KIINRAREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDY  152 (464)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999 68999999999999


Q ss_pred             ccccCc-ccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130           81 GRLSGQ-RLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI  159 (449)
Q Consensus        81 g~ls~~-~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli  159 (449)
                      |+||++ +++++..|+|++.+..|+||.||+|||.++||||+|+||||.||||||||||+|+.+|||.++|||+||.||+
T Consensus       153 G~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLi  232 (464)
T COG0215         153 GKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLI  232 (464)
T ss_pred             HhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCccccc
Confidence            999976 7899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhccC-CCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHH
Q 013130          160 FPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLD  238 (449)
Q Consensus       160 ~~H~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~  238 (449)
                      ||||+||+||++|+++ ++|+++|||+|||+++|+|||||+||||+++|++++|+|.++|||||++||+++++||++.|.
T Consensus       233 FPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~  312 (464)
T COG0215         233 FPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLE  312 (464)
T ss_pred             CCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHH
Confidence            9999999999999999 799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 013130          239 SASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK  318 (449)
Q Consensus       239 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~  318 (449)
                      ++.+.+.+|++++..+........       . .    .+.++...|.++|+|||||+.|++. |+++++.+|..++...
T Consensus       313 ~A~~~l~rl~~~~~~~~~~~~~~~-------~-~----~~~~~~~~f~~al~DDfnt~~al~~-l~~l~~~~~~~~~~~~  379 (464)
T COG0215         313 EAKKALERLYNALRRLRDLAGDAE-------L-A----DLKEFEARFREALDDDFNTPKALAV-LFELAKEINRLLEEGK  379 (464)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccc-------c-c----hhHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHhhhhhccc
Confidence            999999999998876542211110       0 0    3456777899999999999999999 9999999987765443


Q ss_pred             ccCchhhhhhhHHHHHHHHHHHHHHHHHhc-----CCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCCh
Q 013130          319 KKQPKQQQLSLIESLRKIENEVKEVLRILG-----LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDF  393 (449)
Q Consensus       319 pw~~~~~~~~~~~~l~~~~~~l~~~l~ilg-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf  393 (449)
                      .            ....++..+..++.+||     +.+... .           ......++.|+.||++|.+||++|||
T Consensus       380 ~------------~~~~~~~~~~~~~~~lg~~~l~~~~~~~-~-----------~~~~~~~~~i~~Li~~R~~aR~~K~~  435 (464)
T COG0215         380 S------------DAKAVLSALKALLAILGLKVLGLFPQSG-A-----------QEDESDDEEIEALIEERLEARKAKNW  435 (464)
T ss_pred             c------------chHHHHHHHHHHHHHhCchhhccccccc-c-----------ccccchHHHHHHHHHHHHHHHHhhCH
Confidence            1            01122234444444444     444310 0           01112467899999999999999999


Q ss_pred             hHhHHHHHHcHhCCCEEEecCCCeEEEe
Q 013130          394 SKSDQIRADLTRKGIALMDMGKETIWRP  421 (449)
Q Consensus       394 ~~AD~IRd~L~~~Gi~i~D~~~gt~W~~  421 (449)
                      ++||+||++|.++||.|+|+|+||+|++
T Consensus       436 ~~AD~iRd~L~~~Gi~leD~~~gt~w~~  463 (464)
T COG0215         436 ALADEIRDELLALGIILEDTPDGTTWRR  463 (464)
T ss_pred             HHHHHHHHHHHHCCcEEEECCCCeEEEe
Confidence            9999999999999999999999999997

>PLN02946 cysteine-tRNA ligase	Back alignment and domain information

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>TIGR00435 cysS cysteinyl-tRNA synthetase	Back alignment and domain information

>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12418 cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02224 methionine-tRNA ligase	Back alignment and domain information

>PLN02610 probable methionyl-tRNA synthetase	Back alignment and domain information

>PRK11893 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12267 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK00133 metG methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00398 metG methionyl-tRNA synthetase	Back alignment and domain information

>PRK12268 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK13208 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00422 valS valyl-tRNA synthetase	Back alignment and domain information

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>PRK05729 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>PRK14900 valS valyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02943 aminoacyl-tRNA ligase	Back alignment and domain information

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional	Back alignment and domain information

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK01611 argS arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK00390 leuS leucyl-tRNA synthetase; Validated	Back alignment and domain information

>PLN02843 isoleucyl-tRNA synthetase	Back alignment and domain information

>PLN02882 aminoacyl-tRNA ligase	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>TIGR00392 ileS isoleucyl-tRNA synthetase	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>PLN02381 valyl-tRNA synthetase	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00456 argS arginyl-tRNA synthetase	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12451 arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases	Back alignment and domain information

>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase	Back alignment and domain information

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02286 arginine-tRNA ligase	Back alignment and domain information

>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete	Back alignment and domain information

>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases	Back alignment and domain information

>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases	Back alignment and domain information

>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases	Back alignment and domain information

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family	Back alignment and domain information

>PLN03233 putative glutamate-tRNA ligase; Provisional	Back alignment and domain information

>PRK05347 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases	Back alignment and domain information

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12558 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family	Back alignment and domain information

>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases	Back alignment and domain information

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional	Back alignment and domain information

>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains	Back alignment and domain information

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PTZ00437 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02907 glutamate-tRNA ligase	Back alignment and domain information

>PTZ00402 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase	Back alignment and domain information

>TIGR00440 glnS glutaminyl-tRNA synthetase	Back alignment and domain information

>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases	Back alignment and domain information

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase	Back alignment and domain information

>PLN02859 glutamine-tRNA ligase	Back alignment and domain information

>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02627 glutamyl-tRNA synthetase	Back alignment and domain information

>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases	Back alignment and domain information

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed	Back alignment and domain information

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase	Back alignment and domain information

>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC	Back alignment and domain information

>PLN02882 aminoacyl-tRNA ligase	Back alignment and domain information

>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00392 ileS isoleucyl-tRNA synthetase	Back alignment and domain information

>PLN02843 isoleucyl-tRNA synthetase	Back alignment and domain information

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase	Back alignment and domain information

>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase	Back alignment and domain information

>TIGR00233 trpS tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK13354 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK05912 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>PLN02381 valyl-tRNA synthetase	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12556 tryptophanyl-tRNA synthetase; Provisional	Back alignment and domain information

>smart00836 DALR_1 DALR anticodon binding domain	Back alignment and domain information

>PTZ00126 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed	Back alignment and domain information

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK08560 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00234 tyrS tyrosyl-tRNA synthetase	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00348 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02486 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02886 aminoacyl-tRNA ligase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		449
1li5_A		461	Crystal Structure Of Cysteinyl-Trna Synthetase Leng		3e-74
3tqo_A		462	Structure Of The Cysteinyl-Trna Synthetase (Cyss) F		4e-74
3sp1_A		501	Crystal Structure Of Cysteinyl-Trna Synthetase (Cys		2e-39
3c8z_A		414	The 1.6 A Crystal Structure Of Mshc: The Rate Limit		8e-36

>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase Length = 461

Back alignment and structure

Iteration: 1

Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 173/422 (40%), Positives = 225/422 (53%), Gaps = 38/422 (9%) Query: 2 QIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINND 61 +II+RAN+ GE+ +++ +R E D L L P +PR + H+ +I ++ Q+I Sbjct: 73 KIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKG 132 Query: 62 CAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEP 120 AYV + GDV F V P YG LS Q L+ +AG RV V KRNP DF LWK +K GEP Sbjct: 133 HAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEP 192 Query: 121 SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS 180 SW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQS A V+ Sbjct: 193 SWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVN 252 Query: 181 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 240 YWMH+G V + EKMSKSLGNFFT+R + + Y +R+FL+S HYRS LNYS L A Sbjct: 253 YWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQA 312 Query: 241 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 300 A+ +Y L+ + ++P AR F M DD NT + Sbjct: 313 RAALERLYTALRGTDKTVAPAGGEAFEAR---------------FIEAMDDDFNTPEAYS 357 Query: 301 GAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRKIENEVKEVLRILGLL--PPGAYSEV 358 F A +N L ++ LRK+ +LGLL P A+ + Sbjct: 358 VLFDMA-----REVNRLKAEDMAAAN-AMASHLRKLSA-------VLGLLEQEPEAFLQS 404 Query: 359 LQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETI 418 Q D + E LI++R ARK KD++ +D R L GI L D + T Sbjct: 405 GAQADDSEVAEIE-------ALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTT 457 Query: 419 WR 420 WR Sbjct: 458 WR 459

PyMOL of 1li5

>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii Length = 462

Back alignment and structure

>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi Length = 501

Back alignment and structure

>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		449
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	0.0
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	0.0
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	0.0
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	1e-146
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1wz2_A		967	Leucyl-tRNA synthetase; ligase, riken structural g	6e-09
1wkb_A		810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	6e-07
2csx_A		497	Methionyl-tRNA synthetase; ligase, riken structura	6e-06
3kfl_A		564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	2e-05
4dlp_A		536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	2e-05
2x1l_A		524	Methionyl-tRNA synthetase; nucleotide-binding, pro	2e-05
2d5b_A		500	Methionyl-tRNA synthetase; rossmann fold, class 1A	3e-04
1ile_A		821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	6e-04

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461	Back alignment and structure

 Score =  565 bits (1459), Expect = 0.0
 Identities = 162/419 (38%), Positives = 222/419 (52%), Gaps = 34/419 (8%)

Query: 3   IIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDC 62
           II+RAN+ GE+ +++ +R   E   D   L  L P  +PR + H+ +I ++  Q+I    
Sbjct: 74  IIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGH 133

Query: 63  AYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 121
           AYV + GDV F V   P YG LS Q L+  +AG RV V   KRNP DF LWK +K GEPS
Sbjct: 134 AYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPS 193

Query: 122 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 181
           W SPWG GRPGWHIECSAM+   L + FDIHGGG DL+FPHHENEIAQS  A     V+Y
Sbjct: 194 WPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNY 253

Query: 182 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSAS 241
           WMH+G V  + EKMSKSLGNFFT+R + + Y    +R+FL+S HYRS LNYS   L  A 
Sbjct: 254 WMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQAR 313

Query: 242 DAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 301
            A+  +Y  L+  +  ++P                        F   M DD NT    + 
Sbjct: 314 AALERLYTALRGTDKTVAPAGG---------------EAFEARFIEAMDDDFNTPEAYSV 358

Query: 302 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQ 361
            F D  + +N                  + +   + + ++++  +LGLL      +  + 
Sbjct: 359 LF-DMAREVNRLKA------------EDMAAANAMASHLRKLSAVLGLLE-----QEPEA 400

Query: 362 LKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 420
                 +  +    ++  LI++R  ARK KD++ +D  R  L   GI L D  + T WR
Sbjct: 401 FLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWR 459

PyMOL of 1li5

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462	Back alignment and structure

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967	Back alignment and structure

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810	Back alignment and structure

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497	Back alignment and structure

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564	Back alignment and structure

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536	Back alignment and structure

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524	Back alignment and structure

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500	Back alignment and structure

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		449
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	100.0
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	100.0
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	100.0
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	100.0
2csx_A		497	Methionyl-tRNA synthetase; ligase, riken structura	100.0
3u1f_A		542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	100.0
1rqg_A		722	Methionyl-tRNA synthetase; translation, dimerizati	100.0
2d5b_A		500	Methionyl-tRNA synthetase; rossmann fold, class 1A	100.0
2x1l_A		524	Methionyl-tRNA synthetase; nucleotide-binding, pro	100.0
3kfl_A		564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	100.0
4dlp_A		536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	100.0
3h99_A		560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	100.0
1gax_A		862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	100.0
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	100.0
1ffy_A		917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	100.0
1ile_A		821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	100.0
1wkb_A		810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	100.0
1wz2_A		967	Leucyl-tRNA synthetase; ligase, riken structural g	100.0
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
1irx_A		523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	100.0
4arc_A		880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	100.0
2v0c_A		878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	100.0
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	99.95
3fnr_A		464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	99.95
3aii_A		553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.93
1qtq_A		553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.93
2hz7_A		851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.9
2cfo_A		492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.85
1nzj_A		298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.77
2o5r_A		481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	99.3
1j09_A		468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	99.29
3afh_A		488	Glutamyl-tRNA synthetase 2; protein-substrate comp	99.25
3al0_C		592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.23
4g6z_A		490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	99.05
2ja2_A		498	Glutamyl-tRNA synthetase; non-discriminating gluta	98.7
4gri_A		512	Glutamate--tRNA ligase; structural genomics, seatt	98.12
2cyb_A		323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	97.62
1h3f_A		432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	96.82
2yxn_A		322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	96.82
2g36_A		340	Tryptophanyl-tRNA synthetase; TM0492, structural g	96.72
1y42_X		392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	96.58
2pid_A		356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	96.49
2el7_A		337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	96.44
1jil_A		420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	96.38
2jan_A		432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	96.36
2ts1_A		419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	96.28
1n3l_A		372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	96.26
3tzl_A		322	Tryptophanyl-tRNA synthetase; structural genomics,	96.01
2dlc_X		394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	95.91
1yi8_B		351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	95.49
2zp1_A		314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	95.22
3vgj_A		373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	94.95
2cya_A		364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	94.9
3hzr_A		386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	94.82
1i6k_A		328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	94.45
2cyc_A		375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	94.3
3i05_A		395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	94.26
2yy5_A		348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	94.07
2j5b_A		348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	93.97
3tze_A		406	Tryptophanyl-tRNA synthetase; structural genomics,	93.53
2ip1_A		432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	93.46
3jxe_A		392	Tryptophanyl-tRNA synthetase; adenosine triphospha	93.2
3p0j_A		690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	92.96
3hv0_A		393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	92.8
1r6u_A		437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	92.29
3prh_A		388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	91.39
3foc_A		451	Tryptophanyl-tRNA synthetase; structural genomics,	91.17
1r6t_A		477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	91.12
3sz3_A		341	Tryptophanyl-tRNA synthetase; structural genomics,	88.19
3n9i_A		346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	87.94
3a04_A		372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	83.71

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}	Back alignment and structure

Probab=100.00  E-value=1.6e-97  Score=762.25  Aligned_cols=386  Identities=42%  Similarity=0.695  Sum_probs=286.4

Q ss_pred             ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee-cCcEEEeCCCCCc
Q 013130            1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN   79 (449)
Q Consensus         1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~-~g~~yf~~~~~~~   79 (449)
                      .||+++|++.|++|+++|++|++.|+++|++|||.+|+++||+|+|++.|+++|++|+++|+||++ +|+||||+++|+.
T Consensus        75 dKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~  154 (462)
T 3tqo_A           75 DKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKD  154 (462)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccc
Confidence            389999999999999999999999999999999999999999999999999999999999999999 7999999999999


Q ss_pred             cccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130           80 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI  159 (449)
Q Consensus        80 yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli  159 (449)
                      ||+||+++++++..|.|++.+.+|+||.||+|||.+++|+|+|+||||.||||||||||+|+.+|||.++|||+||.||+
T Consensus       155 yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~  234 (462)
T 3tqo_A          155 YGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLK  234 (462)
T ss_dssp             TTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGT
T ss_pred             cccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccc
Confidence            99999999999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHH
Q 013130          160 FPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDS  239 (449)
Q Consensus       160 ~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~  239 (449)
                      ||||+|++||++|+++.||+++|+|+|+|+++|+|||||+||||+|.+++++||+|++|||+++++|++|++||++.|.+
T Consensus       235 FpHheneiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~  314 (462)
T 3tqo_A          235 FPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLEN  314 (462)
T ss_dssp             TTHHHHHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred             cHHHHhHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHH
Confidence            99999999999999988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013130          240 ASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK  319 (449)
Q Consensus       240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~al~~~l~~l~~~~N~yi~~~~p  319 (449)
                      +.+.+.+|++.+.++.    ...    .        ..+..+.+.|.++|+|||||+.|++. |+++++.+|.+++... 
T Consensus       315 a~~~l~rl~~~~~~~~----~~~----~--------~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~~~-  376 (462)
T 3tqo_A          315 GRLALERFYLALRGLP----VVN----H--------EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDNNQ-  376 (462)
T ss_dssp             HHHHHHHHHHHHTTCC----C------------------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHhh----hcc----c--------hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcccc-
Confidence            9999999998875431    100    0        11345678899999999999999999 9999999999876432 


Q ss_pred             cCchhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHhcCCChhHhHHH
Q 013130          320 KQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQI  399 (449)
Q Consensus       320 w~~~~~~~~~~~~l~~~~~~l~~~l~ilgi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~I  399 (449)
                                ...+..+...+..++.+|||... .....++   .   ....+.+++|+.||++|++||++|||++||+|
T Consensus       377 ----------~~~~~~~~~~~~~~~~vlg~~~~-~~~~~~~---~---~~~~~~~~~i~~li~~R~~ar~~kd~~~aD~i  439 (462)
T 3tqo_A          377 ----------IEKAAVLAAELKCLGNIFGLLQY-SPEQFLQ---G---AKKEADVQEIKKLIDQRNEARAKKDWKTADQI  439 (462)
T ss_dssp             ----------HHHHHHHHHHHHHHHGGGTCSCS-CHHHHC----------------------------------------
T ss_pred             ----------HHHHHHHHHHHHHHHHhcCCCcc-chhhhhh---c---cccccCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence                      11223445678888999999765 2221111   0   00122346799999999999999999999999


Q ss_pred             HHHcHhCCCEEEecCCCeEEEe
Q 013130          400 RADLTRKGIALMDMGKETIWRP  421 (449)
Q Consensus       400 Rd~L~~~Gi~i~D~~~gt~W~~  421 (449)
                      |++|.++||.|+|||+||+|++
T Consensus       440 R~~L~~~Gi~l~D~~~g~~w~~  461 (462)
T 3tqo_A          440 RDQLTDLGVAIEDSSDGTSWRQ  461 (462)
T ss_dssp             ----------------------
T ss_pred             HHHHHHCCcEEEEcCCCcEEEe
Confidence            9999999999999999999986

PyMOL of 3tqo

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}	Back alignment and structure

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*	Back alignment and structure

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*	Back alignment and structure

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1	Back alignment and structure

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A	Back alignment and structure

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*	Back alignment and structure

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}	Back alignment and structure

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}	Back alignment and structure

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A	Back alignment and structure

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1	Back alignment and structure

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*	Back alignment and structure

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*	Back alignment and structure

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}	Back alignment and structure

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}	Back alignment and structure

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A	Back alignment and structure

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1	Back alignment and structure

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*	Back alignment and structure

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*	Back alignment and structure

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*	Back alignment and structure

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}	Back alignment and structure

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A	Back alignment and structure

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}	Back alignment and structure

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}	Back alignment and structure

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*	Back alignment and structure

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}	Back alignment and structure

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A	Back alignment and structure

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*	Back alignment and structure

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}	Back alignment and structure

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}	Back alignment and structure

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A	Back alignment and structure

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}	Back alignment and structure

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}	Back alignment and structure

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*	Back alignment and structure

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*	Back alignment and structure

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}	Back alignment and structure

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A	Back alignment and structure

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*	Back alignment and structure

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}	Back alignment and structure

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*	Back alignment and structure

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}	Back alignment and structure

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A	Back alignment and structure

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*	Back alignment and structure

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*	Back alignment and structure

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*	Back alignment and structure

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*	Back alignment and structure

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}	Back alignment and structure

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}	Back alignment and structure

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}	Back alignment and structure

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A	Back alignment and structure

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0	Back alignment and structure

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}	Back alignment and structure

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}	Back alignment and structure

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}	Back alignment and structure

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*	Back alignment and structure

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}	Back alignment and structure

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*	Back alignment and structure

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0	Back alignment and structure

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A	Back alignment and structure

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}	Back alignment and structure

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}	Back alignment and structure

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A	Back alignment and structure

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1	Back alignment and structure

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		449
d1li5a2		315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	5e-58
d1irxa2		317	c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {	2e-33
d1rqga2		361	c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe	4e-26
d1pfva2		350	c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe	3e-23
d2d5ba2		348	c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR	4e-21
d1ffya3		450	c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe	6e-17
d1ivsa4		425	c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase	3e-15
d1ilea3		452	c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe	5e-11
d1li5a1		87	a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (Cy	5e-05
d1j09a2		305	c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS	8e-05
d1iq0a2		370	c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS	0.003

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

 Score =  191 bits (486), Expect = 5e-58
 Identities = 125/244 (51%), Positives = 152/244 (62%), Gaps = 1/244 (0%)

Query: 1   MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM-EQIKDMITQIIN 59
            +II+RAN+ GE+ +++ +R   E   D   L  L P  +PR + H+ E I+     I  
Sbjct: 72  DKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAK 131

Query: 60  NDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGE 119
                   GDV F V   P YG LS Q L+  +AG RV V   KRNP DF LWK +K GE
Sbjct: 132 GHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGE 191

Query: 120 PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 179
           PSW SPWG GRPGWHIECSAM+   L + FDIHGGG DL+FPHHENEIAQS  A     V
Sbjct: 192 PSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYV 251

Query: 180 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDS 239
           +YWMH+G V  + EKMSKSLGNFFT+R + + Y    +R+FL+S HYRS LNYS   L  
Sbjct: 252 NYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ 311

Query: 240 ASDA 243
           A  A
Sbjct: 312 ARAA 315

PyMOL of d1li5a2

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361	Back information, alignment and structure

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452	Back information, alignment and structure

>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 87	Back information, alignment and structure

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305	Back information, alignment and structure

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		449
d1li5a2		315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	100.0
d1pfva2		350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	100.0
d1rqga2		361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	100.0
d2d5ba2		348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	100.0
d1ivsa4		425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	99.97
d1ffya3		450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	99.97
d1ilea3		452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	99.96
d1h3na3		494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	99.84
d1irxa2		317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	99.72
d1f7ua2		348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	99.45
d1iq0a2		370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	99.33
d1j09a2		305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	99.23
d1rqga1		210	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	99.16
d2d5ba1		152	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	99.11
d1pfva1		162	Methionyl-tRNA synthetase (MetRS) {Escherichia col	99.06
d1nzja_		286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	98.52
d1li5a1		87	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	98.22
d1ffya1		273	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	97.87
d1gtra2		331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	97.84
d1ivsa2		218	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	97.68
d1ilea1		180	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	97.44
d1h3na1		128	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	97.3
d1h3fa1		343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	96.52
d1f7ua1		124	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	96.37
d1jila_		323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	95.98
d1iq0a1		126	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	95.63
d1j1ua_		306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	94.17
d2ts1a_		319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	92.41
d1n3la_		339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	86.46

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-42  Score=339.58  Aligned_cols=242  Identities=52%  Similarity=0.915  Sum_probs=213.3

Q ss_pred             ChhHHHHHHcCCChHHHHHHHHHHHHHHHhhCCCCCCCccccccccHHHHHHHHHHHHHcCCeEee-cCcEEEeCCCCCc
Q 013130            1 MQIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN   79 (449)
Q Consensus         1 ~KI~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~I~~~d~~~rtt~h~~~v~~~i~~L~~~G~aY~~-~g~~yf~~~~~~~   79 (449)
                      +||+..|++.|++|++++++++.+|.++++.++|.+|+.++++++|++.+++.+++|.++|++|.. .+.+|+++...+.
T Consensus        72 ~~i~~~a~~~~~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  151 (315)
T d1li5a2          72 DKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPT  151 (315)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTT
T ss_pred             HHHHHHHhhhhhccccccccchhhhhhhHHhcCCCCCcEEEecchhhhhhhhHHHHhhccCceeccccceEEeecccccc
Confidence            379999999999999999999999999999999999999999999999999999999999999987 4678888887788


Q ss_pred             cccccCcccccccCCCCCcccccccCccchhccccccCCCCcccCCCCCCCCCchhhhHHHHHhhcCCCccEEeecccCc
Q 013130           80 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI  159 (449)
Q Consensus        80 yg~ls~~~l~~~~~g~~~~~~~~k~~~~Df~lwk~~~~~~~~w~s~WG~grPgWh~e~~~~~~~~~g~~~Dih~~GkDli  159 (449)
                      |+..+...+.++..|.++......++|.|+++||.++.+++.+.+.||.++|+|+++|...+...++..+|+|++|.|+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~  231 (315)
T d1li5a2         152 YGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLM  231 (315)
T ss_dssp             TTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGT
T ss_pred             cCccccccccccccCCcccccccccChhhhhccccCccCCceeccCCceecccccchhhhHHHHHcCCcccccccccccc
Confidence            88888777666666666555556778899999999989999999999999999999999999899999999999999999


Q ss_pred             CchhHHHHHHHhhccCCCCCcEEEeeeeeeeCCccccccCCCccCHHHHHHhcChhHHHHHHhhcCcCCCcccCHHHHHH
Q 013130          160 FPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDS  239 (449)
Q Consensus       160 ~~H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~~~l~~  239 (449)
                      ++|+..++++..+..+..++.+|+|+|||+++|+|||||+||||+|+|+++.||+|++|||||+.+++++++||++.|.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~~~~s~ldFs~e~l~~  311 (315)
T d1li5a2         232 FPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ  311 (315)
T ss_dssp             TTHHHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHH
T ss_pred             cccccccchhhhcccccccccEEEEEEEEecCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHH
Confidence            99999999999998888888999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHH
Q 013130          240 ASD  242 (449)
Q Consensus       240 ~~~  242 (449)
                      +.+
T Consensus       312 a~~  314 (315)
T d1li5a2         312 ARA  314 (315)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            764

PyMOL of d1li5a2

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ivsa2 a.27.1.1 (A:579-796) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}	Back information, alignment and structure

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure